Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69105.t1 | XP_003603699.1 | 87.5 | 337 | 41 | 1 | 1 | 336 | 1 | 337 | 5.40E-156 | 560.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69105.t1 | Q9LSL1 | 65.2 | 207 | 61 | 4 | 141 | 336 | 145 | 351 | 2.7e-63 | 243.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69105.t1 | G7J450 | 87.5 | 337 | 41 | 1 | 1 | 336 | 1 | 337 | 3.9e-156 | 560.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69105.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene69105 | -0.811107 | 8.26E-51 | -1.69E-46 |
| MS.gene050904 | MS.gene69105 | -0.81035 | 1.20E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene69105 | -0.803409 | 3.54E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene69105 | 0.819559 | 1.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69105.t1 | MTR_3g111290 | 94.955 | 337 | 16 | 1 | 1 | 336 | 1 | 337 | 0.0 | 636 |
| MS.gene69105.t1 | MTR_5g030770 | 49.275 | 345 | 146 | 11 | 1 | 336 | 1 | 325 | 4.65e-88 | 267 |
| MS.gene69105.t1 | MTR_5g030770 | 47.826 | 345 | 145 | 12 | 1 | 336 | 1 | 319 | 6.90e-81 | 249 |
| MS.gene69105.t1 | MTR_7g083900 | 46.316 | 190 | 76 | 4 | 170 | 333 | 284 | 473 | 4.47e-44 | 157 |
| MS.gene69105.t1 | MTR_7g083900 | 46.073 | 191 | 76 | 5 | 170 | 333 | 284 | 474 | 8.73e-43 | 154 |
| MS.gene69105.t1 | MTR_3g498695 | 45.078 | 193 | 82 | 3 | 165 | 333 | 291 | 483 | 1.06e-42 | 154 |
| MS.gene69105.t1 | MTR_3g498695 | 45.408 | 196 | 76 | 5 | 165 | 333 | 291 | 482 | 9.17e-42 | 151 |
| MS.gene69105.t1 | MTR_3g030700 | 41.711 | 187 | 90 | 5 | 161 | 328 | 185 | 371 | 2.06e-36 | 135 |
| MS.gene69105.t1 | MTR_7g076840 | 38.562 | 306 | 99 | 14 | 8 | 308 | 5 | 226 | 4.35e-34 | 125 |
| MS.gene69105.t1 | MTR_3g104100 | 36.410 | 195 | 100 | 6 | 161 | 331 | 184 | 378 | 2.38e-31 | 121 |
| MS.gene69105.t1 | MTR_2g081040 | 37.097 | 186 | 93 | 5 | 170 | 331 | 175 | 360 | 1.06e-30 | 119 |
| MS.gene69105.t1 | MTR_1g112680 | 53.425 | 73 | 34 | 0 | 160 | 232 | 305 | 377 | 4.58e-18 | 85.5 |
| MS.gene69105.t1 | MTR_1g072320 | 32.692 | 156 | 76 | 5 | 163 | 289 | 454 | 609 | 3.08e-14 | 73.9 |
| MS.gene69105.t1 | MTR_2g038040 | 52.941 | 68 | 31 | 1 | 168 | 234 | 48 | 115 | 7.86e-14 | 70.5 |
| MS.gene69105.t1 | MTR_5g014640 | 28.571 | 175 | 108 | 4 | 168 | 326 | 150 | 323 | 2.42e-13 | 70.1 |
| MS.gene69105.t1 | MTR_4g092700 | 26.590 | 173 | 107 | 5 | 170 | 325 | 156 | 325 | 1.38e-12 | 68.2 |
| MS.gene69105.t1 | MTR_8g024770 | 34.706 | 170 | 82 | 9 | 158 | 302 | 262 | 427 | 1.62e-12 | 68.6 |
| MS.gene69105.t1 | MTR_8g027495 | 27.329 | 161 | 106 | 4 | 169 | 318 | 455 | 615 | 1.65e-12 | 68.6 |
| MS.gene69105.t1 | MTR_8g024790 | 31.579 | 171 | 85 | 8 | 158 | 303 | 274 | 437 | 1.69e-12 | 68.6 |
| MS.gene69105.t1 | MTR_4g057270 | 45.312 | 64 | 35 | 0 | 165 | 228 | 142 | 205 | 2.79e-12 | 67.0 |
| MS.gene69105.t1 | MTR_2g084280 | 30.128 | 156 | 90 | 5 | 171 | 308 | 132 | 286 | 3.14e-12 | 67.0 |
| MS.gene69105.t1 | MTR_2g010450 | 26.738 | 187 | 114 | 6 | 161 | 329 | 167 | 348 | 4.44e-12 | 66.6 |
| MS.gene69105.t1 | MTR_5g030430 | 28.814 | 177 | 95 | 6 | 159 | 306 | 478 | 652 | 2.37e-11 | 65.1 |
| MS.gene69105.t1 | MTR_7g117670 | 28.834 | 163 | 101 | 5 | 169 | 318 | 399 | 559 | 3.36e-11 | 64.7 |
| MS.gene69105.t1 | MTR_8g064700 | 30.872 | 149 | 80 | 4 | 171 | 298 | 243 | 389 | 3.62e-11 | 64.3 |
| MS.gene69105.t1 | MTR_7g096350 | 42.169 | 83 | 43 | 2 | 156 | 233 | 334 | 416 | 4.96e-11 | 63.9 |
| MS.gene69105.t1 | MTR_8g067280 | 38.372 | 86 | 50 | 2 | 142 | 225 | 431 | 515 | 5.18e-11 | 64.3 |
| MS.gene69105.t1 | MTR_6g047570 | 29.004 | 231 | 113 | 10 | 1 | 229 | 35 | 216 | 6.57e-11 | 63.2 |
| MS.gene69105.t1 | MTR_2g104560 | 26.531 | 196 | 125 | 6 | 144 | 325 | 29 | 219 | 7.48e-11 | 61.6 |
| MS.gene69105.t1 | MTR_4g091990 | 31.061 | 132 | 76 | 4 | 171 | 297 | 44 | 165 | 9.00e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69105.t1 | AT5G65640 | 66.184 | 207 | 59 | 4 | 139 | 336 | 147 | 351 | 2.65e-79 | 246 |
| MS.gene69105.t1 | AT5G10570 | 64.286 | 182 | 57 | 3 | 159 | 336 | 138 | 315 | 8.15e-71 | 223 |
| MS.gene69105.t1 | AT1G12860 | 46.739 | 184 | 78 | 3 | 170 | 333 | 265 | 448 | 2.34e-43 | 155 |
| MS.gene69105.t1 | AT3G26744 | 45.026 | 191 | 75 | 5 | 170 | 333 | 305 | 492 | 1.87e-40 | 148 |
| MS.gene69105.t1 | AT3G26744 | 45.026 | 191 | 75 | 5 | 170 | 333 | 305 | 492 | 1.87e-40 | 148 |
| MS.gene69105.t1 | AT3G26744 | 45.026 | 191 | 75 | 5 | 170 | 333 | 305 | 492 | 1.87e-40 | 148 |
| MS.gene69105.t1 | AT1G12860 | 50.327 | 153 | 56 | 3 | 170 | 302 | 265 | 417 | 2.26e-38 | 141 |
| MS.gene69105.t1 | AT3G26744 | 48.125 | 160 | 53 | 5 | 170 | 302 | 305 | 461 | 3.55e-35 | 134 |
| MS.gene69105.t1 | AT5G65640 | 62.602 | 123 | 36 | 3 | 139 | 253 | 147 | 267 | 2.74e-31 | 119 |
| MS.gene69105.t1 | AT2G16910 | 35.484 | 155 | 64 | 4 | 171 | 289 | 313 | 467 | 5.69e-19 | 88.2 |
| MS.gene69105.t1 | AT4G29930 | 33.775 | 151 | 78 | 5 | 171 | 307 | 53 | 195 | 1.93e-15 | 75.1 |
| MS.gene69105.t1 | AT4G29930 | 33.333 | 144 | 85 | 5 | 171 | 307 | 53 | 192 | 2.51e-15 | 74.7 |
| MS.gene69105.t1 | AT4G29930 | 33.333 | 144 | 85 | 5 | 171 | 307 | 53 | 192 | 4.38e-15 | 73.9 |
| MS.gene69105.t1 | AT4G29930 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 2.78e-14 | 70.9 |
| MS.gene69105.t1 | AT4G09820 | 30.409 | 171 | 103 | 5 | 161 | 327 | 352 | 510 | 3.14e-14 | 73.9 |
| MS.gene69105.t1 | AT4G17880 | 33.129 | 163 | 89 | 6 | 159 | 303 | 401 | 561 | 4.15e-14 | 73.6 |
| MS.gene69105.t1 | AT4G29930 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 9.13e-14 | 70.5 |
| MS.gene69105.t1 | AT4G29930 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 1.17e-13 | 70.5 |
| MS.gene69105.t1 | AT4G29930 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 1.17e-13 | 70.5 |
| MS.gene69105.t1 | AT2G22760 | 26.111 | 180 | 112 | 4 | 153 | 312 | 98 | 276 | 1.74e-13 | 70.5 |
| MS.gene69105.t1 | AT2G22760 | 26.437 | 174 | 107 | 4 | 153 | 306 | 98 | 270 | 4.11e-13 | 69.3 |
| MS.gene69105.t1 | AT5G46830 | 33.557 | 149 | 83 | 3 | 169 | 303 | 340 | 486 | 1.30e-12 | 68.9 |
| MS.gene69105.t1 | AT2G46510 | 41.111 | 90 | 43 | 2 | 148 | 227 | 361 | 450 | 2.06e-12 | 68.6 |
| MS.gene69105.t1 | AT1G32640 | 31.847 | 157 | 78 | 5 | 169 | 303 | 449 | 598 | 3.18e-12 | 67.8 |
| MS.gene69105.t1 | AT4G00870 | 39.535 | 86 | 40 | 2 | 156 | 229 | 221 | 306 | 3.28e-11 | 64.3 |
| MS.gene69105.t1 | AT2G28160 | 40.909 | 66 | 39 | 0 | 163 | 228 | 122 | 187 | 3.83e-11 | 63.5 |
| MS.gene69105.t1 | AT2G28160 | 40.909 | 66 | 39 | 0 | 163 | 228 | 122 | 187 | 4.53e-11 | 63.5 |
| MS.gene69105.t1 | AT5G46760 | 42.466 | 73 | 40 | 1 | 159 | 229 | 400 | 472 | 9.32e-11 | 63.2 |
Find 56 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGAAGAGCTTCAGAATT+TGG | 0.194817 | 3.4:-96253546 | MS.gene69105:CDS |
| TTGAAAACTACTGGCATTTC+AGG | 0.202127 | 3.4:+96253485 | None:intergenic |
| GTACCTACCTTGCTTATCTT+AGG | 0.245588 | 3.4:+96253332 | None:intergenic |
| GCAACAGGAATTGGAGAAAA+AGG | 0.270835 | 3.4:-96252465 | MS.gene69105:intron |
| AGATTTCATTGAGGAATTAA+TGG | 0.282846 | 3.4:-96253900 | MS.gene69105:CDS |
| TCTTCAACACCACAGATTCT+TGG | 0.321672 | 3.4:-96253659 | MS.gene69105:CDS |
| AACACTTTCAATGAAATCTA+TGG | 0.323772 | 3.4:-96253698 | MS.gene69105:CDS |
| ATACCCTGCACTTCTGAATA+AGG | 0.328974 | 3.4:+96252412 | None:intergenic |
| TCTCTTTCGTCTTCTCCTTT+CGG | 0.335778 | 3.4:+96253391 | None:intergenic |
| CAAGAAGAGTTTGGAAGATA+TGG | 0.342140 | 3.4:+96253767 | None:intergenic |
| AAGTCTTCTTGAGAAATAAA+TGG | 0.343736 | 3.4:+96253608 | None:intergenic |
| GCTGCAAACAACATGTAAAA+TGG | 0.348415 | 3.4:-96253522 | MS.gene69105:CDS |
| TGTTGACTACAAGAAGAGTT+TGG | 0.397391 | 3.4:+96253758 | None:intergenic |
| GGCATTTCAGGTGATTGTAT+TGG | 0.405729 | 3.4:+96253497 | None:intergenic |
| GTCCTTGAAGTTTCTTCGAT+CGG | 0.408164 | 3.4:+96253435 | None:intergenic |
| TTGATCTTCTTCTCCCATCA+TGG | 0.410222 | 3.4:+96253577 | None:intergenic |
| TACCTACCTTGCTTATCTTA+GGG | 0.413903 | 3.4:+96253333 | None:intergenic |
| CACAATGCAGGCTTCTTGCT+CGG | 0.422339 | 3.4:-96252823 | MS.gene69105:CDS |
| AGGGTTGAAATTTGTTGTGC+AGG | 0.424911 | 3.4:-96252936 | MS.gene69105:CDS |
| CTTTGTAGTTTGAGGTAGAG+AGG | 0.429500 | 3.4:-96252971 | MS.gene69105:intron |
| TCATTGTTGTTATAGCTTTG+AGG | 0.442557 | 3.4:+96253731 | None:intergenic |
| TTTCAATGATTTCACAATGC+AGG | 0.451446 | 3.4:-96252835 | MS.gene69105:CDS |
| ATTTGTTGTGCAGGGAAACC+AGG | 0.459623 | 3.4:-96252927 | MS.gene69105:CDS |
| TTTCAACACTGGTAAGGGTA+TGG | 0.466525 | 3.4:-96253468 | MS.gene69105:CDS |
| CAAGCCTTATTCAGAAGTGC+AGG | 0.468092 | 3.4:-96252416 | MS.gene69105:CDS |
| AACCGATCGAAGAAACTTCA+AGG | 0.484937 | 3.4:-96253437 | MS.gene69105:CDS |
| GGGTTGAAATTTGTTGTGCA+GGG | 0.491653 | 3.4:-96252935 | MS.gene69105:CDS |
| TGTTGAAGATTCATCAAGTA+AGG | 0.499336 | 3.4:+96253673 | None:intergenic |
| TTACCAGTGTTGAAAACTAC+TGG | 0.522074 | 3.4:+96253476 | None:intergenic |
| GACTTTCCACTGTCCATGAT+GGG | 0.524863 | 3.4:-96253590 | MS.gene69105:CDS |
| ACAGCCTTCGAAGAATCTAA+TGG | 0.532414 | 3.4:-96253414 | MS.gene69105:CDS |
| ACATAGATGGAGTTCTATGA+TGG | 0.535755 | 3.4:-96253923 | None:intergenic |
| AGACTTTCCACTGTCCATGA+TGG | 0.536479 | 3.4:-96253591 | MS.gene69105:CDS |
| ATGGACAGAACAGCTATACT+TGG | 0.546390 | 3.4:-96253223 | MS.gene69105:CDS |
| TTATTCAGAAGTGCAGGGTA+TGG | 0.549665 | 3.4:-96252410 | MS.gene69105:CDS |
| TTTGAGGTAGAGAGGAGTGC+AGG | 0.549939 | 3.4:-96252963 | MS.gene69105:CDS |
| TAGAGAGGAGTGCAGGCACA+AGG | 0.551771 | 3.4:-96252956 | MS.gene69105:CDS |
| TAACACATTGTTGAATCTCA+AGG | 0.553569 | 3.4:+96252865 | None:intergenic |
| TTCAGAAGTGCAGGGTATGG+TGG | 0.556553 | 3.4:-96252407 | MS.gene69105:CDS |
| GTAAACACATTGGAAGCATT+AGG | 0.566951 | 3.4:-96252888 | MS.gene69105:CDS |
| TTTCTGATTAAGATTTCACT+TGG | 0.582741 | 3.4:+96253097 | None:intergenic |
| TCGGCCATTAGATTCTTCGA+AGG | 0.598463 | 3.4:+96253410 | None:intergenic |
| TTTGTTGTGCAGGGAAACCA+GGG | 0.603806 | 3.4:-96252926 | MS.gene69105:CDS |
| CGAAGAATCTAATGGCCGAA+AGG | 0.611328 | 3.4:-96253406 | MS.gene69105:CDS |
| TGCTTCCAATGTGTTTACTG+TGG | 0.617642 | 3.4:+96252893 | None:intergenic |
| AGAGAGGAGTGCAGGCACAA+GGG | 0.627694 | 3.4:-96252955 | MS.gene69105:CDS |
| CTTAATCAGAAATTCTCCAA+AGG | 0.629828 | 3.4:-96253086 | MS.gene69105:intron |
| TAGTATGAACCAAGAATCTG+TGG | 0.634286 | 3.4:+96253650 | None:intergenic |
| TCTTCTCCCATCATGGACAG+TGG | 0.637946 | 3.4:+96253584 | None:intergenic |
| CTATGATGGAGATTTCATTG+AGG | 0.638365 | 3.4:-96253909 | MS.gene69105:CDS |
| AATTGTCCCTAAGATAAGCA+AGG | 0.652852 | 3.4:-96253339 | MS.gene69105:intron |
| ACTGTGGATAGCAACAACCC+TGG | 0.654925 | 3.4:+96252909 | None:intergenic |
| AAGCCTTATTCAGAAGTGCA+GGG | 0.666202 | 3.4:-96252415 | MS.gene69105:CDS |
| GCTATCCACAGTAAACACAT+TGG | 0.673367 | 3.4:-96252898 | MS.gene69105:CDS |
| TTGCTCGTAGCATTGAAAGA+CGG | 0.697294 | 3.4:+96253360 | None:intergenic |
| AATGCAGGCTTCTTGCTCGG+AGG | 0.698752 | 3.4:-96252820 | MS.gene69105:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATATATAAATTCATCAAA+AGG | - | chr3.4:96253667-96253686 | MS.gene69105:CDS | 15.0% |
| !! | AACAAACAAGAAATACTATT+AGG | + | chr3.4:96253824-96253843 | None:intergenic | 20.0% |
| !! | AACACAGATTAATTTCAAAA+GGG | + | chr3.4:96253267-96253286 | None:intergenic | 20.0% |
| !! | AGTATCACTAACAAAATATT+AGG | + | chr3.4:96253621-96253640 | None:intergenic | 20.0% |
| !! | CACACAGAAATAAAAATAAT+TGG | + | chr3.4:96253297-96253316 | None:intergenic | 20.0% |
| !!! | GGAGTAATATTAGAATTTTT+TGG | - | chr3.4:96253760-96253779 | MS.gene69105:CDS | 20.0% |
| ! | AAATTCTAATATTACTCCCT+CGG | + | chr3.4:96253758-96253777 | None:intergenic | 25.0% |
| ! | AACACTTTCAATGAAATCTA+TGG | - | chr3.4:96252613-96252632 | MS.gene69105:intron | 25.0% |
| ! | AAGTCTTCTTGAGAAATAAA+TGG | + | chr3.4:96252706-96252725 | None:intergenic | 25.0% |
| ! | AGATTTCATTGAGGAATTAA+TGG | - | chr3.4:96252411-96252430 | MS.gene69105:CDS | 25.0% |
| ! | CAACACAGATTAATTTCAAA+AGG | + | chr3.4:96253268-96253287 | None:intergenic | 25.0% |
| ! | CAATAAATATTTGTGACAGA+TGG | - | chr3.4:96253069-96253088 | MS.gene69105:intron | 25.0% |
| ! | CTTTAATTCGACAGTTAAAA+AGG | - | chr3.4:96253730-96253749 | MS.gene69105:CDS | 25.0% |
| ! | GAATTAAAGTCATTTACACA+TGG | + | chr3.4:96253719-96253738 | None:intergenic | 25.0% |
| ! | TTAGTTACTTAATACTTCCT+CGG | - | chr3.4:96253518-96253537 | MS.gene69105:CDS | 25.0% |
| ! | TTGAAATTAATCTGTGTTGA+AGG | - | chr3.4:96253269-96253288 | MS.gene69105:intron | 25.0% |
| ! | TTTCTGATTAAGATTTCACT+TGG | + | chr3.4:96253217-96253236 | None:intergenic | 25.0% |
| !!! | AATTGATTTTCTTCATGACA+TGG | + | chr3.4:96252469-96252488 | None:intergenic | 25.0% |
| !!! | AATTGTTACTTTGTAGTTTG+AGG | - | chr3.4:96253332-96253351 | MS.gene69105:intron | 25.0% |
| CTTAATCAGAAATTCTCCAA+AGG | - | chr3.4:96253225-96253244 | MS.gene69105:CDS | 30.0% | |
| TAACACATTGTTGAATCTCA+AGG | + | chr3.4:96253449-96253468 | None:intergenic | 30.0% | |
| TATTGACCGACAAATTAGAT+CGG | + | chr3.4:96253054-96253073 | None:intergenic | 30.0% | |
| TGTTGAAGATTCATCAAGTA+AGG | + | chr3.4:96252641-96252660 | None:intergenic | 30.0% | |
| TTTCAATGATTTCACAATGC+AGG | - | chr3.4:96253476-96253495 | MS.gene69105:CDS | 30.0% | |
| ! | ATTTTCTTCATGACATGGAT+TGG | + | chr3.4:96252464-96252483 | None:intergenic | 30.0% |
| ! | GTTATACCGATCTAATTTGT+CGG | - | chr3.4:96253045-96253064 | MS.gene69105:intron | 30.0% |
| ! | TCAGTGAAATTTTGTACCTT+TGG | + | chr3.4:96253244-96253263 | None:intergenic | 30.0% |
| ! | TCATTGTTGTTATAGCTTTG+AGG | + | chr3.4:96252583-96252602 | None:intergenic | 30.0% |
| !! | TTTCTTGTTTGTTATGCAAC+AGG | - | chr3.4:96253831-96253850 | MS.gene69105:CDS | 30.0% |
| AATTGTCCCTAAGATAAGCA+AGG | - | chr3.4:96252972-96252991 | MS.gene69105:intron | 35.0% | |
| CAAGAAGAGTTTGGAAGATA+TGG | + | chr3.4:96252547-96252566 | None:intergenic | 35.0% | |
| CGACATTTAAAAAGTAACCG+AGG | + | chr3.4:96253538-96253557 | None:intergenic | 35.0% | |
| GCTGCAAACAACATGTAAAA+TGG | - | chr3.4:96252789-96252808 | MS.gene69105:intron | 35.0% | |
| TACCTACCTTGCTTATCTTA+GGG | + | chr3.4:96252981-96253000 | None:intergenic | 35.0% | |
| TAGTATGAACCAAGAATCTG+TGG | + | chr3.4:96252664-96252683 | None:intergenic | 35.0% | |
| TGATGAAGAGCTTCAGAATT+TGG | - | chr3.4:96252765-96252784 | MS.gene69105:intron | 35.0% | |
| TTGAAAACTACTGGCATTTC+AGG | + | chr3.4:96252829-96252848 | None:intergenic | 35.0% | |
| ! | AGTAGTTTTCAACACTGGTA+AGG | - | chr3.4:96252837-96252856 | MS.gene69105:CDS | 35.0% |
| ! | CTATGATGGAGATTTCATTG+AGG | - | chr3.4:96252402-96252421 | MS.gene69105:CDS | 35.0% |
| ! | GTAGTTTTCAACACTGGTAA+GGG | - | chr3.4:96252838-96252857 | MS.gene69105:CDS | 35.0% |
| ! | TGTTGACTACAAGAAGAGTT+TGG | + | chr3.4:96252556-96252575 | None:intergenic | 35.0% |
| ! | TTACCAGTGTTGAAAACTAC+TGG | + | chr3.4:96252838-96252857 | None:intergenic | 35.0% |
| !! | GTAAACACATTGGAAGCATT+AGG | - | chr3.4:96253423-96253442 | MS.gene69105:CDS | 35.0% |
| !! | GTTTGTTATGCAACAGGAAT+TGG | - | chr3.4:96253837-96253856 | MS.gene69105:CDS | 35.0% |
| AACCGATCGAAGAAACTTCA+AGG | - | chr3.4:96252874-96252893 | MS.gene69105:CDS | 40.0% | |
| ACAGCCTTCGAAGAATCTAA+TGG | - | chr3.4:96252897-96252916 | MS.gene69105:CDS | 40.0% | |
| ATACCCTGCACTTCTGAATA+AGG | + | chr3.4:96253902-96253921 | None:intergenic | 40.0% | |
| ATGGACAGAACAGCTATACT+TGG | - | chr3.4:96253088-96253107 | MS.gene69105:CDS | 40.0% | |
| GCAACAGGAATTGGAGAAAA+AGG | - | chr3.4:96253846-96253865 | MS.gene69105:CDS | 40.0% | |
| GCTATCCACAGTAAACACAT+TGG | - | chr3.4:96253413-96253432 | MS.gene69105:CDS | 40.0% | |
| GTACCTACCTTGCTTATCTT+AGG | + | chr3.4:96252982-96253001 | None:intergenic | 40.0% | |
| GTCCTTGAAGTTTCTTCGAT+CGG | + | chr3.4:96252879-96252898 | None:intergenic | 40.0% | |
| TCTCTTTCGTCTTCTCCTTT+CGG | + | chr3.4:96252923-96252942 | None:intergenic | 40.0% | |
| TCTTCAACACCACAGATTCT+TGG | - | chr3.4:96252652-96252671 | MS.gene69105:intron | 40.0% | |
| TGCTTCCAATGTGTTTACTG+TGG | + | chr3.4:96253421-96253440 | None:intergenic | 40.0% | |
| TTGATCTTCTTCTCCCATCA+TGG | + | chr3.4:96252737-96252756 | None:intergenic | 40.0% | |
| TTTCAACACTGGTAAGGGTA+TGG | - | chr3.4:96252843-96252862 | MS.gene69105:CDS | 40.0% | |
| ! | ATGCCAGTAGTTTTCAACAC+TGG | - | chr3.4:96252832-96252851 | MS.gene69105:CDS | 40.0% |
| ! | CTTTGTAGTTTGAGGTAGAG+AGG | - | chr3.4:96253340-96253359 | MS.gene69105:CDS | 40.0% |
| ! | GGCATTTCAGGTGATTGTAT+TGG | + | chr3.4:96252817-96252836 | None:intergenic | 40.0% |
| ! | TTATTCAGAAGTGCAGGGTA+TGG | - | chr3.4:96253901-96253920 | MS.gene69105:CDS | 40.0% |
| ! | TTGCTCGTAGCATTGAAAGA+CGG | + | chr3.4:96252954-96252973 | None:intergenic | 40.0% |
| !! | AAGCCTTATTCAGAAGTGCA+GGG | - | chr3.4:96253896-96253915 | MS.gene69105:CDS | 40.0% |
| !! | AGGGTTGAAATTTGTTGTGC+AGG | - | chr3.4:96253375-96253394 | MS.gene69105:CDS | 40.0% |
| !! | GGGTTGAAATTTGTTGTGCA+GGG | - | chr3.4:96253376-96253395 | MS.gene69105:CDS | 40.0% |
| AGACTTTCCACTGTCCATGA+TGG | - | chr3.4:96252720-96252739 | MS.gene69105:intron | 45.0% | |
| CGAAGAATCTAATGGCCGAA+AGG | - | chr3.4:96252905-96252924 | MS.gene69105:CDS | 45.0% | |
| GACAGTTAAAAAGGAGCCGA+GGG | - | chr3.4:96253739-96253758 | MS.gene69105:CDS | 45.0% | |
| GACTTTCCACTGTCCATGAT+GGG | - | chr3.4:96252721-96252740 | MS.gene69105:intron | 45.0% | |
| GTCCCTAAGATAAGCAAGGT+AGG | - | chr3.4:96252976-96252995 | MS.gene69105:intron | 45.0% | |
| TCGGCCATTAGATTCTTCGA+AGG | + | chr3.4:96252904-96252923 | None:intergenic | 45.0% | |
| ! | TTTGTTGTGCAGGGAAACCA+GGG | - | chr3.4:96253385-96253404 | MS.gene69105:CDS | 45.0% |
| !! | ATTTGTTGTGCAGGGAAACC+AGG | - | chr3.4:96253384-96253403 | MS.gene69105:CDS | 45.0% |
| !! | CAAGCCTTATTCAGAAGTGC+AGG | - | chr3.4:96253895-96253914 | MS.gene69105:CDS | 45.0% |
| ACTGTGGATAGCAACAACCC+TGG | + | chr3.4:96253405-96253424 | None:intergenic | 50.0% | |
| CACAATGCAGGCTTCTTGCT+CGG | - | chr3.4:96253488-96253507 | MS.gene69105:CDS | 50.0% | |
| CGACAGTTAAAAAGGAGCCG+AGG | - | chr3.4:96253738-96253757 | MS.gene69105:CDS | 50.0% | |
| TCTTCTCCCATCATGGACAG+TGG | + | chr3.4:96252730-96252749 | None:intergenic | 50.0% | |
| ! | TTCAGAAGTGCAGGGTATGG+TGG | - | chr3.4:96253904-96253923 | MS.gene69105:CDS | 50.0% |
| ! | TTTGAGGTAGAGAGGAGTGC+AGG | - | chr3.4:96253348-96253367 | MS.gene69105:CDS | 50.0% |
| AATGCAGGCTTCTTGCTCGG+AGG | - | chr3.4:96253491-96253510 | MS.gene69105:CDS | 55.0% | |
| ! | AGAGAGGAGTGCAGGCACAA+GGG | - | chr3.4:96253356-96253375 | MS.gene69105:CDS | 55.0% |
| ! | TAGAGAGGAGTGCAGGCACA+AGG | - | chr3.4:96253355-96253374 | MS.gene69105:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 96252394 | 96253939 | 96252394 | ID=MS.gene69105 |
| chr3.4 | mRNA | 96252394 | 96253939 | 96252394 | ID=MS.gene69105.t1;Parent=MS.gene69105 |
| chr3.4 | exon | 96253340 | 96253939 | 96253340 | ID=MS.gene69105.t1.exon1;Parent=MS.gene69105.t1 |
| chr3.4 | CDS | 96253340 | 96253939 | 96253340 | ID=cds.MS.gene69105.t1;Parent=MS.gene69105.t1 |
| chr3.4 | exon | 96253087 | 96253245 | 96253087 | ID=MS.gene69105.t1.exon2;Parent=MS.gene69105.t1 |
| chr3.4 | CDS | 96253087 | 96253245 | 96253087 | ID=cds.MS.gene69105.t1;Parent=MS.gene69105.t1 |
| chr3.4 | exon | 96252821 | 96252985 | 96252821 | ID=MS.gene69105.t1.exon3;Parent=MS.gene69105.t1 |
| chr3.4 | CDS | 96252821 | 96252985 | 96252821 | ID=cds.MS.gene69105.t1;Parent=MS.gene69105.t1 |
| chr3.4 | exon | 96252394 | 96252480 | 96252394 | ID=MS.gene69105.t1.exon4;Parent=MS.gene69105.t1 |
| chr3.4 | CDS | 96252394 | 96252480 | 96252394 | ID=cds.MS.gene69105.t1;Parent=MS.gene69105.t1 |
| Gene Sequence |
| Protein sequence |
