Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69179.t1 | XP_027905823.1 | 61.9 | 554 | 204 | 3 | 4 | 557 | 109 | 655 | 6.20E-200 | 707.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69179.t1 | Q6AVI0 | 34.4 | 541 | 343 | 4 | 11 | 547 | 170 | 702 | 8.4e-89 | 329.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69179.t1 | A0A3Q7YDY6 | 65.5 | 493 | 136 | 3 | 45 | 537 | 1 | 459 | 2.5e-174 | 621.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene69179 | 0.810262 | 1.26E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene69179 | 0.802971 | 4.35E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene69179 | 0.814589 | 1.43E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene69179 | 0.805972 | 1.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69179.t1 | MTR_4g036325 | 34.021 | 97 | 62 | 2 | 17 | 111 | 2 | 98 | 7.84e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69179.t1 | AT3G42170 | 29.466 | 543 | 354 | 5 | 5 | 547 | 139 | 652 | 1.25e-88 | 288 |
| MS.gene69179.t1 | AT3G42170 | 29.466 | 543 | 354 | 5 | 5 | 547 | 161 | 674 | 2.27e-88 | 288 |
| MS.gene69179.t1 | AT1G18560 | 22.894 | 546 | 359 | 12 | 22 | 549 | 150 | 651 | 3.07e-27 | 117 |
Find 97 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCATACTCACTCATTTC+AGG | 0.229469 | 4.2:-66022154 | None:intergenic |
| AGTTTGATGTACTTCTTTAT+TGG | 0.241474 | 4.2:+66022224 | MS.gene69179:CDS |
| TTTGCTTAACTTCGGATCTT+TGG | 0.246447 | 4.2:+66020928 | MS.gene69179:CDS |
| TCGCGTGCAGAGTAATTTAA+TGG | 0.278025 | 4.2:+66021190 | MS.gene69179:CDS |
| GTATCCAGTGCTCTCTATTA+TGG | 0.292612 | 4.2:+66022264 | MS.gene69179:CDS |
| ATCAACATCTGAACGTGTTC+TGG | 0.293348 | 4.2:-66022385 | None:intergenic |
| TATCTATTCCCCATTGCTTT+AGG | 0.305314 | 4.2:-66021094 | None:intergenic |
| TTCCCCTGACTGGATCTAGA+TGG | 0.316446 | 4.2:-66021968 | None:intergenic |
| AAGTTTGTGATATCATAAAA+TGG | 0.319292 | 4.2:-66021572 | None:intergenic |
| CTTAGTCTTGTTCCCCTGAC+TGG | 0.319502 | 4.2:-66021978 | None:intergenic |
| AACTCATCGTAGTTTACTTT+CGG | 0.351711 | 4.2:+66020719 | MS.gene69179:CDS |
| GAAGTATTGCTATACTAAAC+TGG | 0.352709 | 4.2:+66021808 | MS.gene69179:CDS |
| TTTGAATCCTTCTGCTGAAA+TGG | 0.358930 | 4.2:+66020812 | MS.gene69179:CDS |
| TGTGAAATACATTAAATTAT+CGG | 0.362000 | 4.2:+66021319 | MS.gene69179:CDS |
| ACTCAATTTAATAGTTCAAA+AGG | 0.363317 | 4.2:+66021253 | MS.gene69179:CDS |
| CCATACTCAACAAAACTAAA+AGG | 0.365496 | 4.2:-66020765 | None:intergenic |
| GAAGTTAAGCAAATTCTATT+CGG | 0.383085 | 4.2:-66020918 | None:intergenic |
| TATTCTTGATCCACGCTTGA+AGG | 0.406408 | 4.2:+66021775 | MS.gene69179:CDS |
| GTTTGATTGCCTAAAGCAAT+GGG | 0.425094 | 4.2:+66021085 | MS.gene69179:CDS |
| ATATTGAAAAGATATATGAT+AGG | 0.438122 | 4.2:+66020859 | MS.gene69179:CDS |
| CGCGTGCAGAGTAATTTAAT+GGG | 0.438136 | 4.2:+66021191 | MS.gene69179:CDS |
| TATCATACTCACTCATTTCA+GGG | 0.442153 | 4.2:-66022153 | None:intergenic |
| TAACCCATCTAGATCCAGTC+AGG | 0.446114 | 4.2:+66021964 | MS.gene69179:CDS |
| AATGATTGTGTCAGTGATGC+GGG | 0.447298 | 4.2:+66021362 | MS.gene69179:CDS |
| TACAGTGTTGTACTAGCCTT+CGG | 0.451398 | 4.2:+66021749 | MS.gene69179:CDS |
| TTGTCCTTCTGATGAGGAAT+GGG | 0.454396 | 4.2:+66021517 | MS.gene69179:CDS |
| TGGTAAAATTTGAGAAGTAT+TGG | 0.461998 | 4.2:+66021720 | MS.gene69179:CDS |
| GATATCACAAACTTGATCTC+AGG | 0.462499 | 4.2:+66021581 | MS.gene69179:CDS |
| AATGAAGCTTAAGGATATCA+TGG | 0.469752 | 4.2:+66020887 | MS.gene69179:CDS |
| TGTTGATCTGCACTCGGAGT+TGG | 0.472219 | 4.2:+66022401 | MS.gene69179:CDS |
| TTAACTGCTGAAGCTAAGCT+TGG | 0.481769 | 4.2:+66021836 | MS.gene69179:CDS |
| CTCAATTTAATAGTTCAAAA+GGG | 0.481854 | 4.2:+66021254 | MS.gene69179:CDS |
| TGAAAGTAATACCGAGGATG+AGG | 0.487341 | 4.2:+66023302 | MS.gene69179:CDS |
| TAGGGAAAGAATGAAGCTTA+AGG | 0.489479 | 4.2:+66020878 | MS.gene69179:CDS |
| CAGAGTAATTTAATGGGTAA+TGG | 0.489550 | 4.2:+66021197 | MS.gene69179:CDS |
| CTCTGATGCAACCGTGGTGA+TGG | 0.490190 | 4.2:-66022308 | None:intergenic |
| GAATAGAATTTGCTTAACTT+CGG | 0.493258 | 4.2:+66020920 | MS.gene69179:CDS |
| CTCATATGATGATTGAGAAA+GGG | 0.499808 | 4.2:-66021927 | None:intergenic |
| TCCCCTGACTGGATCTAGAT+GGG | 0.500069 | 4.2:-66021967 | None:intergenic |
| ATTGTCCTTCTGATGAGGAA+TGG | 0.500134 | 4.2:+66021516 | MS.gene69179:CDS |
| TCAAATATTTCACCCACTCT+CGG | 0.506387 | 4.2:-66020794 | None:intergenic |
| ACTCATATGATGATTGAGAA+AGG | 0.509958 | 4.2:-66021928 | None:intergenic |
| GAGTCGTCTTTCAGCATTGG+TGG | 0.511679 | 4.2:+66022328 | MS.gene69179:CDS |
| ATAAAATACAAATTTGCAGT+TGG | 0.512953 | 4.2:-66021614 | None:intergenic |
| TGTTTGATTGCCTAAAGCAA+TGG | 0.514947 | 4.2:+66021084 | MS.gene69179:CDS |
| CTACAGACCATTTCAGCAGA+AGG | 0.516154 | 4.2:-66020819 | None:intergenic |
| AGACATGTCCTTGGATATGA+TGG | 0.516316 | 4.2:+66021700 | MS.gene69179:CDS |
| ACTTTCAAGCATAAAATATC+CGG | 0.516704 | 4.2:-66021435 | None:intergenic |
| TCAGAGTCGTCTTTCAGCAT+TGG | 0.518324 | 4.2:+66022325 | MS.gene69179:CDS |
| TGATGTACTTCTTTATTGGA+AGG | 0.521489 | 4.2:+66022228 | MS.gene69179:CDS |
| AGTTCAAAAGGGTTTGAAAG+TGG | 0.539685 | 4.2:+66021265 | MS.gene69179:CDS |
| TCCACACACTAGTATTGCAT+TGG | 0.539792 | 4.2:+66021052 | MS.gene69179:CDS |
| GATTAGATGTTTCTACGAGG+TGG | 0.543777 | 4.2:+66021408 | MS.gene69179:CDS |
| TATTGAAAAGATATATGATA+GGG | 0.546382 | 4.2:+66020860 | MS.gene69179:CDS |
| TGCACTCGGAGTTGGCTGCA+TGG | 0.547361 | 4.2:+66022409 | MS.gene69179:CDS |
| TTCTGATGAGGAATGGGAAA+GGG | 0.547458 | 4.2:+66021523 | MS.gene69179:CDS |
| TAACTGCTGAAGCTAAGCTT+GGG | 0.549438 | 4.2:+66021837 | MS.gene69179:CDS |
| TAAATTATCGGACGCAAGGA+TGG | 0.551861 | 4.2:+66021331 | MS.gene69179:CDS |
| AAGCGTGGAACTCCTATACT+TGG | 0.555136 | 4.2:-66022362 | None:intergenic |
| TAAACATTGTCCTTCTGATG+AGG | 0.557760 | 4.2:+66021511 | MS.gene69179:CDS |
| CTTCTGCTGAAATGGTCTGT+AGG | 0.558564 | 4.2:+66020820 | MS.gene69179:CDS |
| GCGGGGTTAAGTGTTGGCAC+TGG | 0.561774 | 4.2:+66021380 | MS.gene69179:CDS |
| AGTGATTCGAGACATGTCCT+TGG | 0.561936 | 4.2:+66021691 | MS.gene69179:CDS |
| ACTTGCAAGTCTTTAAAGCA+TGG | 0.563237 | 4.2:+66022107 | MS.gene69179:CDS |
| CTTTCCCATTCCTCATCAGA+AGG | 0.564810 | 4.2:-66021521 | None:intergenic |
| AGTGCTCTCTATTATGGCAC+GGG | 0.566032 | 4.2:+66022270 | MS.gene69179:CDS |
| CAGTGCTCTCTATTATGGCA+CGG | 0.575633 | 4.2:+66022269 | MS.gene69179:CDS |
| ATCAGTCAATCCCTCATCCT+CGG | 0.580077 | 4.2:-66023313 | None:intergenic |
| TTCAGCAAATGATAACATGA+AGG | 0.586067 | 4.2:+66021148 | MS.gene69179:CDS |
| ACATTAAATTATCGGACGCA+AGG | 0.589817 | 4.2:+66021327 | MS.gene69179:CDS |
| TCTGATGCAACCGTGGTGAT+GGG | 0.593020 | 4.2:-66022307 | None:intergenic |
| ATTTGCTGAAGCATTATCCA+AGG | 0.599674 | 4.2:-66021135 | None:intergenic |
| CTTCTGATGAGGAATGGGAA+AGG | 0.603754 | 4.2:+66021522 | MS.gene69179:CDS |
| GAAAGTAATACCGAGGATGA+GGG | 0.605042 | 4.2:+66023303 | MS.gene69179:CDS |
| CGTGCCATAATAGAGAGCAC+TGG | 0.605882 | 4.2:-66022268 | None:intergenic |
| TGGACATCAACTACAAGTGA+AGG | 0.606805 | 4.2:+66020948 | MS.gene69179:CDS |
| TTCAGATGTTGATCTGCACT+CGG | 0.611205 | 4.2:+66022395 | MS.gene69179:CDS |
| CTGAACGTGTTCTGGAAGCG+TGG | 0.615810 | 4.2:-66022377 | None:intergenic |
| AGATGGGTTAGACAATGAGA+TGG | 0.616146 | 4.2:-66021951 | None:intergenic |
| GAGGGATTGACTGATGCAGC+TGG | 0.618148 | 4.2:+66023321 | MS.gene69179:CDS |
| AGTATGGTAAAATCCGAGAG+TGG | 0.621638 | 4.2:+66020781 | MS.gene69179:CDS |
| TAATGATTGTGTCAGTGATG+CGG | 0.623955 | 4.2:+66021361 | MS.gene69179:CDS |
| TGGATCAAGAATAGCTCCGA+AGG | 0.627035 | 4.2:-66021765 | None:intergenic |
| AACCCATCTAGATCCAGTCA+GGG | 0.630053 | 4.2:+66021965 | MS.gene69179:CDS |
| AGCTTAAGGATATCATGGCT+AGG | 0.638263 | 4.2:+66020892 | MS.gene69179:CDS |
| AGTGATGCGGGGTTAAGTGT+TGG | 0.641309 | 4.2:+66021374 | MS.gene69179:CDS |
| GTATGGTAAAATCCGAGAGT+GGG | 0.650207 | 4.2:+66020782 | MS.gene69179:CDS |
| GTTTCTACGAGGTGGAACAC+CGG | 0.663198 | 4.2:+66021416 | MS.gene69179:CDS |
| TCCAATGCAATACTAGTGTG+TGG | 0.672232 | 4.2:-66021053 | None:intergenic |
| ATGATTGTGTCAGTGATGCG+GGG | 0.678591 | 4.2:+66021363 | MS.gene69179:CDS |
| TGAAGATGAAAGTAATACCG+AGG | 0.681683 | 4.2:+66023296 | MS.gene69179:CDS |
| AATGCAATACTAGTGTGTGG+AGG | 0.689054 | 4.2:-66021050 | None:intergenic |
| ACCCATCTAGATCCAGTCAG+GGG | 0.712532 | 4.2:+66021966 | MS.gene69179:CDS |
| AGACGACTCTGATGCAACCG+TGG | 0.722435 | 4.2:-66022314 | None:intergenic |
| TTTGATTGCCTAAAGCAATG+GGG | 0.734644 | 4.2:+66021086 | MS.gene69179:CDS |
| GCTGAGCATTCCCATCACCA+CGG | 0.743404 | 4.2:+66022297 | MS.gene69179:CDS |
| TAAGATTAGATGTTTCTACG+AGG | 0.794347 | 4.2:+66021405 | MS.gene69179:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAAGATATATGAT+AGG | + | chr4.2:66020859-66020878 | MS.gene69179:CDS | 15.0% |
| !! | ATTTGATGCAAAAATTTAAA+AGG | + | chr4.2:66021861-66021880 | MS.gene69179:CDS | 15.0% |
| !! | TATTGAAAAGATATATGATA+GGG | + | chr4.2:66020860-66020879 | MS.gene69179:CDS | 15.0% |
| !! | TGTGAAATACATTAAATTAT+CGG | + | chr4.2:66021319-66021338 | MS.gene69179:CDS | 15.0% |
| !! | AAGTTTGTGATATCATAAAA+TGG | - | chr4.2:66021575-66021594 | None:intergenic | 20.0% |
| !! | ACTCAATTTAATAGTTCAAA+AGG | + | chr4.2:66021253-66021272 | MS.gene69179:CDS | 20.0% |
| !! | ATAAAATACAAATTTGCAGT+TGG | - | chr4.2:66021617-66021636 | None:intergenic | 20.0% |
| !! | CTCAATTTAATAGTTCAAAA+GGG | + | chr4.2:66021254-66021273 | MS.gene69179:CDS | 20.0% |
| !!! | ATTTGTATTTTATGCAAGTA+TGG | + | chr4.2:66021624-66021643 | MS.gene69179:CDS | 20.0% |
| !!! | TGAGTATGATATATATTTTG+AGG | + | chr4.2:66022165-66022184 | MS.gene69179:CDS | 20.0% |
| !!! | TTTTAAAGAATTTCATGAAG+AGG | - | chr4.2:66022852-66022871 | None:intergenic | 20.0% |
| ! | ACTTTCAAGCATAAAATATC+CGG | - | chr4.2:66021438-66021457 | None:intergenic | 25.0% |
| ! | AGTTTGATGTACTTCTTTAT+TGG | + | chr4.2:66022224-66022243 | MS.gene69179:CDS | 25.0% |
| ! | ATAGCACTTAAATACAAACA+AGG | - | chr4.2:66022756-66022775 | None:intergenic | 25.0% |
| ! | CTAGAGTATAATCTGTATAT+TGG | - | chr4.2:66023027-66023046 | None:intergenic | 25.0% |
| ! | GAAGTTAAGCAAATTCTATT+CGG | - | chr4.2:66020921-66020940 | None:intergenic | 25.0% |
| ! | TAGCACTTAAATACAAACAA+GGG | - | chr4.2:66022755-66022774 | None:intergenic | 25.0% |
| ! | TATTGTTCATGAACTCATAT+TGG | + | chr4.2:66023113-66023132 | MS.gene69179:intron | 25.0% |
| ! | TATTTGGTTGTTTGAACTAT+GGG | + | chr4.2:66022642-66022661 | MS.gene69179:intron | 25.0% |
| !! | AAATTTTACCATCATATCCA+AGG | - | chr4.2:66021711-66021730 | None:intergenic | 25.0% |
| !! | GAAGATATTTTCTATTACCT+TGG | + | chr4.2:66021118-66021137 | MS.gene69179:CDS | 25.0% |
| !! | GAATAGAATTTGCTTAACTT+CGG | + | chr4.2:66020920-66020939 | MS.gene69179:CDS | 25.0% |
| !! | GTAATTTAACAGTGTCTTTT+TGG | + | chr4.2:66023209-66023228 | MS.gene69179:intron | 25.0% |
| !! | TGACTTTGTGTTTTTCTAAA+AGG | - | chr4.2:66021661-66021680 | None:intergenic | 25.0% |
| !! | TGGTAAAATTTGAGAAGTAT+TGG | + | chr4.2:66021720-66021739 | MS.gene69179:CDS | 25.0% |
| !!! | AAAAGCATTTGAGATTTTTC+AGG | + | chr4.2:66021472-66021491 | MS.gene69179:CDS | 25.0% |
| !!! | AAACTACTATTTTAACCAGA+GGG | - | chr4.2:66022592-66022611 | None:intergenic | 25.0% |
| !!! | AGTTCTTCTGAAATTTCAAT+TGG | + | chr4.2:66023073-66023092 | MS.gene69179:intron | 25.0% |
| !!! | ATGAGTTTTTTGGTTGATTT+CGG | - | chr4.2:66020706-66020725 | None:intergenic | 25.0% |
| !!! | CTTTTCAATATCTGAAACTT+CGG | - | chr4.2:66020850-66020869 | None:intergenic | 25.0% |
| !!! | GTATGATATATATTTTGAGG+AGG | + | chr4.2:66022168-66022187 | MS.gene69179:CDS | 25.0% |
| AAAAATTTATCCTTCAAGCG+TGG | - | chr4.2:66021788-66021807 | None:intergenic | 30.0% | |
| AACTCATCGTAGTTTACTTT+CGG | + | chr4.2:66020719-66020738 | MS.gene69179:CDS | 30.0% | |
| AAGTAAGAAGTTATGGTTAG+TGG | + | chr4.2:66023048-66023067 | MS.gene69179:intron | 30.0% | |
| AATGAAGCTTAAGGATATCA+TGG | + | chr4.2:66020887-66020906 | MS.gene69179:CDS | 30.0% | |
| ACTCATATGATGATTGAGAA+AGG | - | chr4.2:66021931-66021950 | None:intergenic | 30.0% | |
| ATATCATACTCACTCATTTC+AGG | - | chr4.2:66022157-66022176 | None:intergenic | 30.0% | |
| CAGTTAGGAATGTACATATT+TGG | + | chr4.2:66022906-66022925 | MS.gene69179:intron | 30.0% | |
| CCATACTCAACAAAACTAAA+AGG | - | chr4.2:66020768-66020787 | None:intergenic | 30.0% | |
| CTACAAATCAGAATCCATTT+CGG | - | chr4.2:66022490-66022509 | None:intergenic | 30.0% | |
| CTATTTGGTTGTTTGAACTA+TGG | + | chr4.2:66022641-66022660 | MS.gene69179:intron | 30.0% | |
| CTCATATGATGATTGAGAAA+GGG | - | chr4.2:66021930-66021949 | None:intergenic | 30.0% | |
| GTCAAAATGTTACTCATGTT+TGG | - | chr4.2:66022887-66022906 | None:intergenic | 30.0% | |
| TATCATACTCACTCATTTCA+GGG | - | chr4.2:66022156-66022175 | None:intergenic | 30.0% | |
| TGATGTACTTCTTTATTGGA+AGG | + | chr4.2:66022228-66022247 | MS.gene69179:CDS | 30.0% | |
| TTAACTAAATGAATTCCCTC+TGG | + | chr4.2:66022574-66022593 | MS.gene69179:intron | 30.0% | |
| TTCAGCAAATGATAACATGA+AGG | + | chr4.2:66021148-66021167 | MS.gene69179:CDS | 30.0% | |
| ! | AAGCTAGCAGTATTACATTT+TGG | - | chr4.2:66023170-66023189 | None:intergenic | 30.0% |
| ! | CAGAGTAATTTAATGGGTAA+TGG | + | chr4.2:66021197-66021216 | MS.gene69179:CDS | 30.0% |
| ! | CCAGTTTTCATCTACAAAAT+GGG | - | chr4.2:66020991-66021010 | None:intergenic | 30.0% |
| ! | CTCTAGAAAGTAAGAAGTTA+TGG | + | chr4.2:66023041-66023060 | MS.gene69179:intron | 30.0% |
| ! | CTGTTTCATTAGCTTCTATT+TGG | + | chr4.2:66022626-66022645 | MS.gene69179:intron | 30.0% |
| ! | GGCTTTTCAGAAAATATTTC+TGG | + | chr4.2:66022430-66022449 | MS.gene69179:CDS | 30.0% |
| ! | GTATTTTATGCAAGTATGGA+AGG | + | chr4.2:66021628-66021647 | MS.gene69179:CDS | 30.0% |
| ! | TAAGATTAGATGTTTCTACG+AGG | + | chr4.2:66021405-66021424 | MS.gene69179:CDS | 30.0% |
| ! | TCCAGTTTTCATCTACAAAA+TGG | - | chr4.2:66020992-66021011 | None:intergenic | 30.0% |
| !! | AAAGTTGATACATCAGTTTG+TGG | + | chr4.2:66022776-66022795 | MS.gene69179:intron | 30.0% |
| !! | CACTTTGATTTTATCCGAAA+TGG | + | chr4.2:66022473-66022492 | MS.gene69179:intron | 30.0% |
| !! | GAAGTATTGCTATACTAAAC+TGG | + | chr4.2:66021808-66021827 | MS.gene69179:CDS | 30.0% |
| !! | TGAGTAACATTTTGACAGTT+AGG | + | chr4.2:66022891-66022910 | MS.gene69179:intron | 30.0% |
| !!! | CCTTTTAGTTTTGTTGAGTA+TGG | + | chr4.2:66020765-66020784 | MS.gene69179:CDS | 30.0% |
| !!! | GAAACTACTATTTTAACCAG+AGG | - | chr4.2:66022593-66022612 | None:intergenic | 30.0% |
| !!! | GTAAACTACGATGAGTTTTT+TGG | - | chr4.2:66020716-66020735 | None:intergenic | 30.0% |
| AAGCTAATGAAACAGCAAGT+AGG | - | chr4.2:66022621-66022640 | None:intergenic | 35.0% | |
| ACATTAAATTATCGGACGCA+AGG | + | chr4.2:66021327-66021346 | MS.gene69179:CDS | 35.0% | |
| AGTTCAAAAGGGTTTGAAAG+TGG | + | chr4.2:66021265-66021284 | MS.gene69179:CDS | 35.0% | |
| CACTTAAATACAAACAAGGG+TGG | - | chr4.2:66022752-66022771 | None:intergenic | 35.0% | |
| CATTGGAATGGAATATGATG+TGG | + | chr4.2:66023234-66023253 | MS.gene69179:intron | 35.0% | |
| GATATCACAAACTTGATCTC+AGG | + | chr4.2:66021581-66021600 | MS.gene69179:CDS | 35.0% | |
| GTTTGATTGCCTAAAGCAAT+GGG | + | chr4.2:66021085-66021104 | MS.gene69179:CDS | 35.0% | |
| TAAACATTGTCCTTCTGATG+AGG | + | chr4.2:66021511-66021530 | MS.gene69179:CDS | 35.0% | |
| TAATGATTGTGTCAGTGATG+CGG | + | chr4.2:66021361-66021380 | MS.gene69179:CDS | 35.0% | |
| TAGGGAAAGAATGAAGCTTA+AGG | + | chr4.2:66020878-66020897 | MS.gene69179:CDS | 35.0% | |
| TATCTATTCCCCATTGCTTT+AGG | - | chr4.2:66021097-66021116 | None:intergenic | 35.0% | |
| TCAAATATTTCACCCACTCT+CGG | - | chr4.2:66020797-66020816 | None:intergenic | 35.0% | |
| TGAAGATGAAAGTAATACCG+AGG | + | chr4.2:66023296-66023315 | MS.gene69179:CDS | 35.0% | |
| TGTTTGATTGCCTAAAGCAA+TGG | + | chr4.2:66021084-66021103 | MS.gene69179:CDS | 35.0% | |
| TTTGAATCCTTCTGCTGAAA+TGG | + | chr4.2:66020812-66020831 | MS.gene69179:CDS | 35.0% | |
| TTTGATTGCCTAAAGCAATG+GGG | + | chr4.2:66021086-66021105 | MS.gene69179:CDS | 35.0% | |
| TTTGCTTAACTTCGGATCTT+TGG | + | chr4.2:66020928-66020947 | MS.gene69179:CDS | 35.0% | |
| ! | AAATGCTTTTCTGTACTGCA+AGG | - | chr4.2:66021462-66021481 | None:intergenic | 35.0% |
| ! | ACAGTGTCTTTTTGGATCAT+TGG | + | chr4.2:66023217-66023236 | MS.gene69179:intron | 35.0% |
| ! | ATTTGCTGAAGCATTATCCA+AGG | - | chr4.2:66021138-66021157 | None:intergenic | 35.0% |
| ! | CCCATTTTGTAGATGAAAAC+TGG | + | chr4.2:66020988-66021007 | MS.gene69179:CDS | 35.0% |
| ! | GTCTTTTTGGATCATTGGAA+TGG | + | chr4.2:66023222-66023241 | MS.gene69179:intron | 35.0% |
| ! | GTTTTCATCTACAAAATGGG+CGG | - | chr4.2:66020988-66021007 | None:intergenic | 35.0% |
| ! | TCATATTGGAATTTTCCCTC+TGG | + | chr4.2:66023127-66023146 | MS.gene69179:intron | 35.0% |
| !! | ACTTGCAAGTCTTTAAAGCA+TGG | + | chr4.2:66022107-66022126 | MS.gene69179:CDS | 35.0% |
| !!! | AGCATTTGAGATTTTTCAGG+TGG | + | chr4.2:66021475-66021494 | MS.gene69179:CDS | 35.0% |
| !!! | GACGTGTTTTAACCAAGTAT+AGG | + | chr4.2:66022350-66022369 | MS.gene69179:CDS | 35.0% |
| AATGATTGTGTCAGTGATGC+GGG | + | chr4.2:66021362-66021381 | MS.gene69179:CDS | 40.0% | |
| AATGCAATACTAGTGTGTGG+AGG | - | chr4.2:66021053-66021072 | None:intergenic | 40.0% | |
| AGACATGTCCTTGGATATGA+TGG | + | chr4.2:66021700-66021719 | MS.gene69179:CDS | 40.0% | |
| AGCTTAAGGATATCATGGCT+AGG | + | chr4.2:66020892-66020911 | MS.gene69179:CDS | 40.0% | |
| AGTATGGTAAAATCCGAGAG+TGG | + | chr4.2:66020781-66020800 | MS.gene69179:CDS | 40.0% | |
| ATCAACATCTGAACGTGTTC+TGG | - | chr4.2:66022388-66022407 | None:intergenic | 40.0% | |
| ATTGTCCTTCTGATGAGGAA+TGG | + | chr4.2:66021516-66021535 | MS.gene69179:CDS | 40.0% | |
| CGCGTGCAGAGTAATTTAAT+GGG | + | chr4.2:66021191-66021210 | MS.gene69179:CDS | 40.0% | |
| GAAAGTAATACCGAGGATGA+GGG | + | chr4.2:66023303-66023322 | MS.gene69179:CDS | 40.0% | |
| GTATCCAGTGCTCTCTATTA+TGG | + | chr4.2:66022264-66022283 | MS.gene69179:CDS | 40.0% | |
| GTATGGTAAAATCCGAGAGT+GGG | + | chr4.2:66020782-66020801 | MS.gene69179:CDS | 40.0% | |
| TAAATTATCGGACGCAAGGA+TGG | + | chr4.2:66021331-66021350 | MS.gene69179:CDS | 40.0% | |
| TAACTGCTGAAGCTAAGCTT+GGG | + | chr4.2:66021837-66021856 | MS.gene69179:CDS | 40.0% | |
| TATTCTTGATCCACGCTTGA+AGG | + | chr4.2:66021775-66021794 | MS.gene69179:CDS | 40.0% | |
| TCCAATGCAATACTAGTGTG+TGG | - | chr4.2:66021056-66021075 | None:intergenic | 40.0% | |
| TCCACACACTAGTATTGCAT+TGG | + | chr4.2:66021052-66021071 | MS.gene69179:CDS | 40.0% | |
| TCGCGTGCAGAGTAATTTAA+TGG | + | chr4.2:66021190-66021209 | MS.gene69179:CDS | 40.0% | |
| TGAAAGTAATACCGAGGATG+AGG | + | chr4.2:66023302-66023321 | MS.gene69179:CDS | 40.0% | |
| TGGACATCAACTACAAGTGA+AGG | + | chr4.2:66020948-66020967 | MS.gene69179:CDS | 40.0% | |
| TTAACTGCTGAAGCTAAGCT+TGG | + | chr4.2:66021836-66021855 | MS.gene69179:CDS | 40.0% | |
| TTCAGATGTTGATCTGCACT+CGG | + | chr4.2:66022395-66022414 | MS.gene69179:CDS | 40.0% | |
| TTCTGATGAGGAATGGGAAA+GGG | + | chr4.2:66021523-66021542 | MS.gene69179:CDS | 40.0% | |
| TTGACGTGCTGCATAATTGA+AGG | + | chr4.2:66022685-66022704 | MS.gene69179:intron | 40.0% | |
| TTGTCCTTCTGATGAGGAAT+GGG | + | chr4.2:66021517-66021536 | MS.gene69179:CDS | 40.0% | |
| ! | GATTAGATGTTTCTACGAGG+TGG | + | chr4.2:66021408-66021427 | MS.gene69179:CDS | 40.0% |
| !! | AGATGGGTTAGACAATGAGA+TGG | - | chr4.2:66021954-66021973 | None:intergenic | 40.0% |
| !! | TACAGTGTTGTACTAGCCTT+CGG | + | chr4.2:66021749-66021768 | MS.gene69179:CDS | 40.0% |
| AACCCATCTAGATCCAGTCA+GGG | + | chr4.2:66021965-66021984 | MS.gene69179:CDS | 45.0% | |
| AAGCGTGGAACTCCTATACT+TGG | - | chr4.2:66022365-66022384 | None:intergenic | 45.0% | |
| AGTGATTCGAGACATGTCCT+TGG | + | chr4.2:66021691-66021710 | MS.gene69179:CDS | 45.0% | |
| AGTGCTCTCTATTATGGCAC+GGG | + | chr4.2:66022270-66022289 | MS.gene69179:CDS | 45.0% | |
| ATCAGTCAATCCCTCATCCT+CGG | - | chr4.2:66023316-66023335 | None:intergenic | 45.0% | |
| ATGATTGTGTCAGTGATGCG+GGG | + | chr4.2:66021363-66021382 | MS.gene69179:CDS | 45.0% | |
| CAGTGCTCTCTATTATGGCA+CGG | + | chr4.2:66022269-66022288 | MS.gene69179:CDS | 45.0% | |
| CTACAGACCATTTCAGCAGA+AGG | - | chr4.2:66020822-66020841 | None:intergenic | 45.0% | |
| CTTCTGATGAGGAATGGGAA+AGG | + | chr4.2:66021522-66021541 | MS.gene69179:CDS | 45.0% | |
| CTTCTGCTGAAATGGTCTGT+AGG | + | chr4.2:66020820-66020839 | MS.gene69179:CDS | 45.0% | |
| CTTTCCCATTCCTCATCAGA+AGG | - | chr4.2:66021524-66021543 | None:intergenic | 45.0% | |
| GGATCCACATTCATCACAGT+AGG | - | chr4.2:66022731-66022750 | None:intergenic | 45.0% | |
| TAACCCATCTAGATCCAGTC+AGG | + | chr4.2:66021964-66021983 | MS.gene69179:CDS | 45.0% | |
| TCAGAGTCGTCTTTCAGCAT+TGG | + | chr4.2:66022325-66022344 | MS.gene69179:CDS | 45.0% | |
| TGCTCCTACTGTGATGAATG+TGG | + | chr4.2:66022724-66022743 | MS.gene69179:intron | 45.0% | |
| TGGATCAAGAATAGCTCCGA+AGG | - | chr4.2:66021768-66021787 | None:intergenic | 45.0% | |
| !!! | AGATTTTTCAGGTGGCAGAC+AGG | + | chr4.2:66021483-66021502 | MS.gene69179:CDS | 45.0% |
| !!! | GAATTTTCCCTCTGGCTTTG+TGG | + | chr4.2:66023135-66023154 | MS.gene69179:intron | 45.0% |
| !!! | TAATATTGATTTAATATATT+AGG | + | chr4.2:66022084-66022103 | MS.gene69179:intron | 5.0% |
| ACCCATCTAGATCCAGTCAG+GGG | + | chr4.2:66021966-66021985 | MS.gene69179:CDS | 50.0% | |
| AGTGATGCGGGGTTAAGTGT+TGG | + | chr4.2:66021374-66021393 | MS.gene69179:CDS | 50.0% | |
| GTTTCTACGAGGTGGAACAC+CGG | + | chr4.2:66021416-66021435 | MS.gene69179:CDS | 50.0% | |
| TCCCCTGACTGGATCTAGAT+GGG | - | chr4.2:66021970-66021989 | None:intergenic | 50.0% | |
| TCTGATGCAACCGTGGTGAT+GGG | - | chr4.2:66022310-66022329 | None:intergenic | 50.0% | |
| TGTTGATCTGCACTCGGAGT+TGG | + | chr4.2:66022401-66022420 | MS.gene69179:CDS | 50.0% | |
| TTCCCCTGACTGGATCTAGA+TGG | - | chr4.2:66021971-66021990 | None:intergenic | 50.0% | |
| ! | CGTGCCATAATAGAGAGCAC+TGG | - | chr4.2:66022271-66022290 | None:intergenic | 50.0% |
| ! | GAGTCGTCTTTCAGCATTGG+TGG | + | chr4.2:66022328-66022347 | MS.gene69179:CDS | 50.0% |
| !! | CTTAGTCTTGTTCCCCTGAC+TGG | - | chr4.2:66021981-66022000 | None:intergenic | 50.0% |
| !! | TTCCCTCTGGCTTTGTGGAT+GGG | + | chr4.2:66023140-66023159 | MS.gene69179:intron | 50.0% |
| !! | TTTCCCTCTGGCTTTGTGGA+TGG | + | chr4.2:66023139-66023158 | MS.gene69179:intron | 50.0% |
| AGACGACTCTGATGCAACCG+TGG | - | chr4.2:66022317-66022336 | None:intergenic | 55.0% | |
| AGTCCCATCCACAAAGCCAG+AGG | - | chr4.2:66023146-66023165 | None:intergenic | 55.0% | |
| CTCTGATGCAACCGTGGTGA+TGG | - | chr4.2:66022311-66022330 | None:intergenic | 55.0% | |
| GAGGGATTGACTGATGCAGC+TGG | + | chr4.2:66023321-66023340 | MS.gene69179:CDS | 55.0% | |
| GCTGAGCATTCCCATCACCA+CGG | + | chr4.2:66022297-66022316 | MS.gene69179:CDS | 55.0% | |
| GTCCCATCCACAAAGCCAGA+GGG | - | chr4.2:66023145-66023164 | None:intergenic | 55.0% | |
| !! | CTGAACGTGTTCTGGAAGCG+TGG | - | chr4.2:66022380-66022399 | None:intergenic | 55.0% |
| TGCACTCGGAGTTGGCTGCA+TGG | + | chr4.2:66022409-66022428 | MS.gene69179:CDS | 60.0% | |
| !! | GCGGGGTTAAGTGTTGGCAC+TGG | + | chr4.2:66021380-66021399 | MS.gene69179:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 66020699 | 66023356 | 66020699 | ID=MS.gene69179 |
| chr4.2 | mRNA | 66020699 | 66023356 | 66020699 | ID=MS.gene69179.t1;Parent=MS.gene69179 |
| chr4.2 | exon | 66020699 | 66022018 | 66020699 | ID=MS.gene69179.t1.exon1;Parent=MS.gene69179.t1 |
| chr4.2 | CDS | 66020699 | 66022018 | 66020699 | ID=cds.MS.gene69179.t1;Parent=MS.gene69179.t1 |
| chr4.2 | exon | 66022106 | 66022451 | 66022106 | ID=MS.gene69179.t1.exon2;Parent=MS.gene69179.t1 |
| chr4.2 | CDS | 66022106 | 66022451 | 66022106 | ID=cds.MS.gene69179.t1;Parent=MS.gene69179.t1 |
| chr4.2 | exon | 66023295 | 66023356 | 66023295 | ID=MS.gene69179.t1.exon3;Parent=MS.gene69179.t1 |
| chr4.2 | CDS | 66023295 | 66023356 | 66023295 | ID=cds.MS.gene69179.t1;Parent=MS.gene69179.t1 |
| Gene Sequence |
| Protein sequence |
