Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69215.t1 | XP_003600913.1 | 88.4 | 276 | 32 | 0 | 1 | 276 | 1 | 276 | 5.70E-135 | 490.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69215.t1 | Q54GB2 | 33.7 | 199 | 110 | 6 | 71 | 269 | 390 | 566 | 2.3e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69215.t1 | G7JBB2 | 88.4 | 276 | 32 | 0 | 1 | 276 | 1 | 276 | 4.1e-135 | 490.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049267 | MS.gene69215 | 0.82304 | 1.72E-53 | -1.69E-46 |
| MS.gene052917 | MS.gene69215 | 0.80826 | 3.38E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69215.t1 | MTR_3g070810 | 93.841 | 276 | 17 | 0 | 1 | 276 | 1 | 276 | 0.0 | 514 |
| MS.gene69215.t1 | MTR_5g082660 | 69.204 | 289 | 70 | 4 | 6 | 276 | 15 | 302 | 4.09e-136 | 386 |
| MS.gene69215.t1 | MTR_2g049420 | 35.122 | 205 | 108 | 8 | 64 | 265 | 150 | 332 | 2.19e-22 | 95.1 |
| MS.gene69215.t1 | MTR_2g049420 | 35.122 | 205 | 108 | 8 | 64 | 265 | 287 | 469 | 9.35e-22 | 94.7 |
| MS.gene69215.t1 | MTR_2g049420 | 35.122 | 205 | 108 | 8 | 64 | 265 | 278 | 460 | 9.97e-22 | 94.4 |
| MS.gene69215.t1 | MTR_3g006690 | 36.269 | 193 | 100 | 6 | 70 | 261 | 294 | 464 | 1.93e-21 | 93.6 |
| MS.gene69215.t1 | MTR_5g045920 | 37.857 | 140 | 83 | 4 | 127 | 265 | 162 | 298 | 3.89e-21 | 90.9 |
| MS.gene69215.t1 | MTR_2g017810 | 34.000 | 200 | 104 | 7 | 33 | 226 | 66 | 243 | 1.65e-19 | 86.3 |
| MS.gene69215.t1 | MTR_3g085400 | 35.669 | 157 | 76 | 6 | 68 | 222 | 320 | 453 | 2.63e-16 | 79.0 |
| MS.gene69215.t1 | MTR_3g085395 | 34.320 | 169 | 87 | 8 | 68 | 235 | 198 | 343 | 5.43e-16 | 77.4 |
| MS.gene69215.t1 | MTR_5g095530 | 27.160 | 162 | 105 | 5 | 120 | 270 | 199 | 358 | 5.57e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69215.t1 | AT3G55960 | 57.840 | 287 | 96 | 3 | 8 | 273 | 17 | 299 | 6.15e-118 | 340 |
| MS.gene69215.t1 | AT1G29780 | 37.427 | 171 | 86 | 6 | 71 | 240 | 49 | 199 | 3.38e-22 | 92.4 |
| MS.gene69215.t1 | AT1G29770 | 36.076 | 158 | 82 | 6 | 70 | 226 | 101 | 240 | 7.22e-21 | 89.7 |
| MS.gene69215.t1 | AT5G45700 | 36.709 | 158 | 80 | 5 | 71 | 227 | 97 | 235 | 1.67e-20 | 89.0 |
| MS.gene69215.t1 | AT5G46410 | 34.848 | 198 | 104 | 7 | 70 | 265 | 279 | 453 | 9.05e-20 | 89.0 |
| MS.gene69215.t1 | AT5G46410 | 34.848 | 198 | 104 | 7 | 70 | 265 | 279 | 453 | 9.05e-20 | 89.0 |
| MS.gene69215.t1 | AT5G46410 | 34.848 | 198 | 104 | 7 | 70 | 265 | 282 | 456 | 9.52e-20 | 89.0 |
| MS.gene69215.t1 | AT5G11860 | 30.876 | 217 | 115 | 8 | 68 | 273 | 110 | 302 | 3.29e-19 | 85.9 |
| MS.gene69215.t1 | AT5G11860 | 30.876 | 217 | 115 | 8 | 68 | 273 | 110 | 302 | 3.29e-19 | 85.9 |
| MS.gene69215.t1 | AT5G11860 | 30.876 | 217 | 115 | 8 | 68 | 273 | 110 | 302 | 3.29e-19 | 85.9 |
| MS.gene69215.t1 | AT5G11860 | 30.876 | 217 | 115 | 8 | 68 | 273 | 110 | 302 | 3.29e-19 | 85.9 |
| MS.gene69215.t1 | AT5G11860 | 30.876 | 217 | 115 | 8 | 68 | 273 | 110 | 302 | 3.29e-19 | 85.9 |
| MS.gene69215.t1 | AT4G18140 | 35.294 | 204 | 104 | 9 | 66 | 263 | 258 | 439 | 4.55e-19 | 86.7 |
| MS.gene69215.t1 | AT4G18140 | 35.437 | 206 | 105 | 9 | 66 | 265 | 258 | 441 | 5.18e-19 | 86.7 |
| MS.gene69215.t1 | AT4G18140 | 35.437 | 206 | 105 | 9 | 66 | 265 | 258 | 441 | 5.18e-19 | 86.7 |
| MS.gene69215.t1 | AT4G18140 | 35.437 | 206 | 105 | 9 | 66 | 265 | 258 | 441 | 5.18e-19 | 86.7 |
| MS.gene69215.t1 | AT4G18140 | 35.644 | 202 | 102 | 9 | 66 | 261 | 258 | 437 | 6.16e-19 | 86.3 |
| MS.gene69215.t1 | AT4G18140 | 35.644 | 202 | 102 | 9 | 66 | 261 | 258 | 437 | 6.16e-19 | 86.3 |
| MS.gene69215.t1 | AT1G55900 | 29.054 | 148 | 98 | 5 | 129 | 272 | 214 | 358 | 6.94e-14 | 71.2 |
| MS.gene69215.t1 | AT1G55900 | 29.333 | 150 | 96 | 6 | 129 | 271 | 214 | 360 | 8.33e-14 | 71.2 |
Find 50 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGAAGCTGGTTTAAAT+TGG | 0.237910 | 3.2:-64398922 | MS.gene69215:CDS |
| ACGGTAACATAATTGATTAT+TGG | 0.292172 | 3.2:+64398771 | None:intergenic |
| CCTTGTTGTTGAAACCATTC+AGG | 0.294861 | 3.2:+64397984 | None:intergenic |
| CTGTTTACTGCTGGTGTTGA+AGG | 0.307010 | 3.2:-64398687 | MS.gene69215:intron |
| CTTCGAATCTTTATCAACTT+TGG | 0.317855 | 3.2:-64400848 | MS.gene69215:CDS |
| GAACTTTCAATGTTGTCAAC+TGG | 0.329311 | 3.2:+64397950 | None:intergenic |
| TCAGAGAGGTCCTTGAGAAT+TGG | 0.383199 | 3.2:+64398050 | None:intergenic |
| TGTGGTTGCCCTGCCGAAAA+TGG | 0.385800 | 3.2:+64398190 | None:intergenic |
| GTTGAAACCATTCAGGCATA+TGG | 0.407970 | 3.2:+64397991 | None:intergenic |
| GACCTGGTTCTGTTTACTGC+TGG | 0.433896 | 3.2:-64398696 | MS.gene69215:CDS |
| GATAAAGTCTTAGACTAAAC+CGG | 0.442575 | 3.2:+64398526 | None:intergenic |
| ACTTACGTGCGAATTGTTGA+AGG | 0.453162 | 3.2:+64398501 | None:intergenic |
| CAATGTTGTCAACTGGGAGC+TGG | 0.455252 | 3.2:+64397957 | None:intergenic |
| AATGCAGTGTTGAGTTGGTT+TGG | 0.459476 | 3.2:-64400952 | MS.gene69215:CDS |
| ACGCATGGAATTCCATTGTC+AGG | 0.466339 | 3.2:+64398214 | None:intergenic |
| GAATGTTTACAGCGAACATC+GGG | 0.473162 | 3.2:-64398323 | MS.gene69215:intron |
| CTGTAAGAATTCTTTCAACC+CGG | 0.483581 | 3.2:+64398737 | None:intergenic |
| CACTGATAACTCAGCAAGCA+TGG | 0.489900 | 3.2:-64400975 | MS.gene69215:CDS |
| TTAGAAGACAAAGAAAGTAA+AGG | 0.493231 | 3.2:+64400877 | None:intergenic |
| AAAACTCAAGCAACTGAAGC+TGG | 0.501522 | 3.2:-64398932 | MS.gene69215:CDS |
| CGAATGTGTATTTGATAACA+AGG | 0.501985 | 3.2:-64398891 | MS.gene69215:intron |
| ACAGAATAGACACAGAAAAC+CGG | 0.506252 | 3.2:-64398545 | MS.gene69215:CDS |
| AAAAGTACCATATGCCTGAA+TGG | 0.506457 | 3.2:-64397998 | MS.gene69215:CDS |
| ACTTAGCGAATTTGCTGACC+TGG | 0.523387 | 3.2:-64398712 | MS.gene69215:CDS |
| TCAGATTATTGGATTATTCG+CGG | 0.532005 | 3.2:-64400908 | MS.gene69215:CDS |
| CATGGAATGCAGTGTTGAGT+TGG | 0.538178 | 3.2:-64400957 | MS.gene69215:CDS |
| TTACCGTCTTTGAACGCCCC+GGG | 0.545253 | 3.2:-64398755 | MS.gene69215:CDS |
| AACTTTCAATGTTGTCAACT+GGG | 0.548122 | 3.2:+64397951 | None:intergenic |
| TGTTATTCTTCCAATTCTCA+AGG | 0.548938 | 3.2:-64398060 | MS.gene69215:CDS |
| GTGTCTATTCTGTCAACAAG+TGG | 0.560392 | 3.2:+64398555 | None:intergenic |
| CACCAGCAGTAAACAGAACC+AGG | 0.563248 | 3.2:+64398694 | None:intergenic |
| CCTGAATGGTTTCAACAACA+AGG | 0.567337 | 3.2:-64397984 | MS.gene69215:CDS |
| CAAAGTTGATAAAGATTCGA+AGG | 0.576408 | 3.2:+64400849 | None:intergenic |
| CAACCCGGGGCGTTCAAAGA+CGG | 0.577044 | 3.2:+64398752 | None:intergenic |
| GTTACCGTCTTTGAACGCCC+CGG | 0.583545 | 3.2:-64398756 | MS.gene69215:CDS |
| GTTCAGATCATTGAGGATGC+CGG | 0.586130 | 3.2:-64400811 | MS.gene69215:CDS |
| TGAATGTTTACAGCGAACAT+CGG | 0.593168 | 3.2:-64398324 | MS.gene69215:intron |
| TTTGAAGGTAGTGCTTGACT+TGG | 0.593890 | 3.2:-64399005 | MS.gene69215:intron |
| TGTGTCTTCAAGGAAGCAGA+TGG | 0.610039 | 3.2:-64398798 | MS.gene69215:intron |
| TTATGCACCTGTGTGTCATG+TGG | 0.614397 | 3.2:+64398172 | None:intergenic |
| GTAAGAATTCTTTCAACCCG+GGG | 0.614560 | 3.2:+64398739 | None:intergenic |
| TGTAAGAATTCTTTCAACCC+GGG | 0.615409 | 3.2:+64398738 | None:intergenic |
| CCTGCCGAAAATGGTACGCA+TGG | 0.615551 | 3.2:+64398199 | None:intergenic |
| CTGAATGGTTTCAACAACAA+GGG | 0.619469 | 3.2:-64397983 | MS.gene69215:CDS |
| AGGGCAACCACATGACACAC+AGG | 0.634058 | 3.2:-64398179 | MS.gene69215:intron |
| AGATCTTACATGCATAACAA+AGG | 0.638747 | 3.2:-64398290 | MS.gene69215:CDS |
| ATCCTCAATGATCTGAACAG+CGG | 0.670300 | 3.2:+64400816 | None:intergenic |
| TAACATCTTTCTGTTCAGAG+AGG | 0.673989 | 3.2:+64398036 | None:intergenic |
| ATCCGCTGTTCAGATCATTG+AGG | 0.682726 | 3.2:-64400818 | MS.gene69215:CDS |
| GCAACCGCCACAAAAGCTCA+CGG | 0.691045 | 3.2:-64400785 | MS.gene69215:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTAAATCTTCACAT+GGG | - | chr3.2:64400121-64400140 | MS.gene69215:intron | 15.0% |
| !! | TAAAATATTAAATCTTCACA+TGG | - | chr3.2:64400120-64400139 | MS.gene69215:intron | 15.0% |
| !! | TTAATTGACCTTATATTTAT+AGG | - | chr3.2:64398402-64398421 | MS.gene69215:intron | 15.0% |
| !! | AACCAATAAACAAAAAACAA+TGG | + | chr3.2:64398210-64398229 | None:intergenic | 20.0% |
| !! | AAGCTATACTAAAAATCATT+AGG | + | chr3.2:64399543-64399562 | None:intergenic | 20.0% |
| !! | AATAAACAAAAAACAATGGA+AGG | + | chr3.2:64398206-64398225 | None:intergenic | 20.0% |
| !! | ATCAGAATTTACATTAAGAA+TGG | + | chr3.2:64399910-64399929 | None:intergenic | 20.0% |
| !! | ATTATTCTATAAATTCTCAC+AGG | - | chr3.2:64400359-64400378 | MS.gene69215:intron | 20.0% |
| !! | CATAACAAAGACAAAAAAAA+TGG | + | chr3.2:64400847-64400866 | None:intergenic | 20.0% |
| !! | TAAGAACATAACAAGAATAT+CGG | + | chr3.2:64399472-64399491 | None:intergenic | 20.0% |
| !! | TAAGAAGAAAAAATAGTTTG+TGG | - | chr3.2:64398262-64398281 | MS.gene69215:CDS | 20.0% |
| !! | TAGAATATGTATATTGAACT+TGG | + | chr3.2:64400549-64400568 | None:intergenic | 20.0% |
| !! | TCAGAATTTACATTAAGAAT+GGG | + | chr3.2:64399909-64399928 | None:intergenic | 20.0% |
| !! | TTGTATAAATTCACAGAATT+AGG | - | chr3.2:64399369-64399388 | MS.gene69215:intron | 20.0% |
| !!! | AGTTTCTTTTGAGTTATATT+TGG | - | chr3.2:64398688-64398707 | MS.gene69215:CDS | 20.0% |
| !!! | ATGATTTTATAACAGCATAA+CGG | + | chr3.2:64399803-64399822 | None:intergenic | 20.0% |
| !!! | CAAATATTTTCTCAGATTAT+TGG | - | chr3.2:64398028-64398047 | MS.gene69215:CDS | 20.0% |
| !!! | TAATATTTTATCAGAAGACA+AGG | + | chr3.2:64400110-64400129 | None:intergenic | 20.0% |
| !!! | TGTTTTTTGTTTATTGGTTA+TGG | - | chr3.2:64398211-64398230 | MS.gene69215:CDS | 20.0% |
| !!! | TTAATTTGTTTTATCCAAAC+AGG | - | chr3.2:64398586-64398605 | MS.gene69215:intron | 20.0% |
| !!! | TTCCATTGTTTTTTGTTTAT+TGG | - | chr3.2:64398205-64398224 | MS.gene69215:CDS | 20.0% |
| ! | ACGGTAACATAATTGATTAT+TGG | + | chr3.2:64400179-64400198 | None:intergenic | 25.0% |
| ! | ATCAGAGAAACAATTAACAA+AGG | + | chr3.2:64400525-64400544 | None:intergenic | 25.0% |
| ! | ATGGCAAGTAAAAAATCATA+TGG | + | chr3.2:64400828-64400847 | None:intergenic | 25.0% |
| ! | TAACTAAAATCACGTTTCAA+TGG | - | chr3.2:64399142-64399161 | MS.gene69215:intron | 25.0% |
| ! | TATGTCAGCCTATAAATATA+AGG | + | chr3.2:64398413-64398432 | None:intergenic | 25.0% |
| ! | TGGGAAATTCATAATTAAAC+TGG | + | chr3.2:64399890-64399909 | None:intergenic | 25.0% |
| ! | TGTATACCAATTTAGACTAT+CGG | + | chr3.2:64399615-64399634 | None:intergenic | 25.0% |
| ! | TTAGAAGACAAAGAAAGTAA+AGG | + | chr3.2:64398073-64398092 | None:intergenic | 25.0% |
| ! | TTCAAAAAAATTGTTCACTC+AGG | + | chr3.2:64399725-64399744 | None:intergenic | 25.0% |
| ! | TTGATAGATTCTAGCATAAT+TGG | + | chr3.2:64399176-64399195 | None:intergenic | 25.0% |
| !! | AATAGTTTGTGGAAATATTC+TGG | - | chr3.2:64398273-64398292 | MS.gene69215:CDS | 25.0% |
| !! | ATCATTGTATGTTACTGTTT+TGG | - | chr3.2:64399690-64399709 | MS.gene69215:intron | 25.0% |
| !! | ATTTGTAACTATCACTGTTT+TGG | - | chr3.2:64398717-64398736 | MS.gene69215:CDS | 25.0% |
| !! | GCAATTTTCATAAGTTATCT+TGG | + | chr3.2:64398519-64398538 | None:intergenic | 25.0% |
| !! | TGATTTTATAACAGCATAAC+GGG | + | chr3.2:64399802-64399821 | None:intergenic | 25.0% |
| !!! | TATTCTGGTTTTATGTTCAT+TGG | - | chr3.2:64398288-64398307 | MS.gene69215:CDS | 25.0% |
| AAAATTGTTCACTCAGGTAT+TGG | + | chr3.2:64399719-64399738 | None:intergenic | 30.0% | |
| AAATCACCGATAGTCTAAAT+TGG | - | chr3.2:64399606-64399625 | MS.gene69215:intron | 30.0% | |
| AGATCTTACATGCATAACAA+AGG | - | chr3.2:64400657-64400676 | MS.gene69215:intron | 30.0% | |
| AGGTTGCAATAAAAAGCTAT+AGG | + | chr3.2:64400716-64400735 | None:intergenic | 30.0% | |
| CATAATGAAGAAATTAGTGC+AGG | + | chr3.2:64399506-64399525 | None:intergenic | 30.0% | |
| CTTCGAATCTTTATCAACTT+TGG | - | chr3.2:64398099-64398118 | MS.gene69215:intron | 30.0% | |
| GATAAAGTCTTAGACTAAAC+CGG | + | chr3.2:64400424-64400443 | None:intergenic | 30.0% | |
| GGTTGCAATAAAAAGCTATA+GGG | + | chr3.2:64400715-64400734 | None:intergenic | 30.0% | |
| TAAACTGGAACAAAAGATCT+AGG | + | chr3.2:64399875-64399894 | None:intergenic | 30.0% | |
| TAACAAAGGACTAGAAAGAA+AGG | + | chr3.2:64400511-64400530 | None:intergenic | 30.0% | |
| TATTCCCATCTTCTTAATGA+CGG | - | chr3.2:64400567-64400586 | MS.gene69215:intron | 30.0% | |
| TCAATTAAGTCAATCCAAAC+AGG | + | chr3.2:64398390-64398409 | None:intergenic | 30.0% | |
| TCAGATTATTGGATTATTCG+CGG | - | chr3.2:64398039-64398058 | MS.gene69215:CDS | 30.0% | |
| TGTTATTCTTCCAATTCTCA+AGG | - | chr3.2:64400887-64400906 | MS.gene69215:CDS | 30.0% | |
| ! | AGATCTAGGATTGCAAATAA+AGG | + | chr3.2:64399861-64399880 | None:intergenic | 30.0% |
| ! | CGAATGTGTATTTGATAACA+AGG | - | chr3.2:64400056-64400075 | MS.gene69215:intron | 30.0% |
| ! | GATTTTATAACAGCATAACG+GGG | + | chr3.2:64399801-64399820 | None:intergenic | 30.0% |
| ! | GGTTGATATCAATTTCCAAA+AGG | + | chr3.2:64400807-64400826 | None:intergenic | 30.0% |
| ! | TTTGAAACAATTGTACCAGA+AGG | + | chr3.2:64399245-64399264 | None:intergenic | 30.0% |
| ! | TTTTTATTGCAACCTGACAA+TGG | - | chr3.2:64400721-64400740 | MS.gene69215:intron | 30.0% |
| !! | CAAAGTTGATAAAGATTCGA+AGG | + | chr3.2:64398101-64398120 | None:intergenic | 30.0% |
| !! | CATAAAGAGTGTCATTCTTT+AGG | - | chr3.2:64399820-64399839 | MS.gene69215:intron | 30.0% |
| !! | GATTCTAGCATAATTGGTTT+TGG | + | chr3.2:64399170-64399189 | None:intergenic | 30.0% |
| AAACCAAACACACACTTGTA+GGG | - | chr3.2:64399197-64399216 | MS.gene69215:intron | 35.0% | |
| ACAGAATAGACACAGAAAAC+CGG | - | chr3.2:64400402-64400421 | MS.gene69215:intron | 35.0% | |
| ACTATCGGTGATTTCATTGT+AGG | + | chr3.2:64399600-64399619 | None:intergenic | 35.0% | |
| CAGAGGGAAAGGAAAAAAAT+GGG | - | chr3.2:64398630-64398649 | MS.gene69215:intron | 35.0% | |
| CTGAATGGTTTCAACAACAA+GGG | - | chr3.2:64400964-64400983 | MS.gene69215:CDS | 35.0% | |
| CTGTAAGAATTCTTTCAACC+CGG | + | chr3.2:64400213-64400232 | None:intergenic | 35.0% | |
| TAACATCTTTCTGTTCAGAG+AGG | + | chr3.2:64400914-64400933 | None:intergenic | 35.0% | |
| TAGATGCACATTAAGATGTG+TGG | + | chr3.2:64399027-64399046 | None:intergenic | 35.0% | |
| TCACCTAAAAACACTATGAG+TGG | + | chr3.2:64398757-64398776 | None:intergenic | 35.0% | |
| TCATCCGTCATTAAGAAGAT+GGG | + | chr3.2:64400574-64400593 | None:intergenic | 35.0% | |
| TGAATGTTTACAGCGAACAT+CGG | - | chr3.2:64400623-64400642 | MS.gene69215:intron | 35.0% | |
| TGCTACATGTGTTTCATGTT+TGG | + | chr3.2:64398987-64399006 | None:intergenic | 35.0% | |
| TGTAAGAATTCTTTCAACCC+GGG | + | chr3.2:64400212-64400231 | None:intergenic | 35.0% | |
| TTCATCCGTCATTAAGAAGA+TGG | + | chr3.2:64400575-64400594 | None:intergenic | 35.0% | |
| ! | AATTCCATGCGTACCATTTT+CGG | - | chr3.2:64400744-64400763 | MS.gene69215:intron | 35.0% |
| ! | CAACTGAAGCTGGTTTAAAT+TGG | - | chr3.2:64400025-64400044 | MS.gene69215:intron | 35.0% |
| ! | GGTGCATAAATTCATCCTTT+TGG | - | chr3.2:64400789-64400808 | MS.gene69215:CDS | 35.0% |
| ! | TGACCACTCATAGTGTTTTT+AGG | - | chr3.2:64398751-64398770 | MS.gene69215:CDS | 35.0% |
| ! | TGTTAGATGGGAGATTTGTT+AGG | - | chr3.2:64398321-64398340 | MS.gene69215:intron | 35.0% |
| !! | AAAAGTACCATATGCCTGAA+TGG | - | chr3.2:64400949-64400968 | MS.gene69215:CDS | 35.0% |
| !! | ACTTGTTGTCAGTCAAATTG+AGG | - | chr3.2:64398947-64398966 | MS.gene69215:CDS | 35.0% |
| !! | GTTAGATGGGAGATTTGTTA+GGG | - | chr3.2:64398322-64398341 | MS.gene69215:intron | 35.0% |
| !!! | ATTGTTTTTGCTTCTTGCGA+TGG | - | chr3.2:64399438-64399457 | MS.gene69215:intron | 35.0% |
| !!! | GTAACTATCACTGTTTTGGT+TGG | - | chr3.2:64398721-64398740 | MS.gene69215:CDS | 35.0% |
| !!! | GTTTTATGCTGCTTTGATCA+TGG | - | chr3.2:64398344-64398363 | MS.gene69215:intron | 35.0% |
| AAAACTCAAGCAACTGAAGC+TGG | - | chr3.2:64400015-64400034 | MS.gene69215:intron | 40.0% | |
| ACTTACGTGCGAATTGTTGA+AGG | + | chr3.2:64400449-64400468 | None:intergenic | 40.0% | |
| ATCCTCAATGATCTGAACAG+CGG | + | chr3.2:64398134-64398153 | None:intergenic | 40.0% | |
| ATGGGAATGTTGTGTCTTCA+AGG | - | chr3.2:64400139-64400158 | MS.gene69215:intron | 40.0% | |
| CACATTAAGATGTGTGGATG+CGG | + | chr3.2:64399021-64399040 | None:intergenic | 40.0% | |
| CCTGAATGGTTTCAACAACA+AGG | - | chr3.2:64400963-64400982 | MS.gene69215:CDS | 40.0% | |
| CTACATACTTAGGTCCTGTT+TGG | + | chr3.2:64398603-64398622 | None:intergenic | 40.0% | |
| GAAAATATGGCAGTTCCTTC+TGG | - | chr3.2:64399227-64399246 | MS.gene69215:intron | 40.0% | |
| GAAACCAAACACACACTTGT+AGG | - | chr3.2:64399196-64399215 | MS.gene69215:intron | 40.0% | |
| GAATGTTTACAGCGAACATC+GGG | - | chr3.2:64400624-64400643 | MS.gene69215:intron | 40.0% | |
| GATCTCACGTATGCATTTGA+AGG | - | chr3.2:64399927-64399946 | MS.gene69215:intron | 40.0% | |
| GCAGAGGGAAAGGAAAAAAA+TGG | - | chr3.2:64398629-64398648 | MS.gene69215:intron | 40.0% | |
| GTAAGAATTCTTTCAACCCG+GGG | + | chr3.2:64400211-64400230 | None:intergenic | 40.0% | |
| GTGTCTATTCTGTCAACAAG+TGG | + | chr3.2:64400395-64400414 | None:intergenic | 40.0% | |
| GTTGAAACCATTCAGGCATA+TGG | + | chr3.2:64400959-64400978 | None:intergenic | 40.0% | |
| TTTGAAGGTAGTGCTTGACT+TGG | - | chr3.2:64399942-64399961 | MS.gene69215:intron | 40.0% | |
| ! | ACCACTGAGCATATTTTGTG+AGG | - | chr3.2:64399291-64399310 | MS.gene69215:intron | 40.0% |
| ! | ATACATACCGTGAGCTTTTG+TGG | + | chr3.2:64398172-64398191 | None:intergenic | 40.0% |
| ! | CCACTGAGCATATTTTGTGA+GGG | - | chr3.2:64399292-64399311 | MS.gene69215:intron | 40.0% |
| !! | AATGCAGTGTTGAGTTGGTT+TGG | - | chr3.2:64397995-64398014 | MS.gene69215:CDS | 40.0% |
| !! | ATGGCTTTAGTGCAGGTTTA+CGG | - | chr3.2:64398363-64398382 | MS.gene69215:intron | 40.0% |
| !! | CCTTGTTGTTGAAACCATTC+AGG | + | chr3.2:64400966-64400985 | None:intergenic | 40.0% |
| !! | TTTGATCATGGCTTTAGTGC+AGG | - | chr3.2:64398356-64398375 | MS.gene69215:intron | 40.0% |
| AAGCCCTACAAGTGTGTGTT+TGG | + | chr3.2:64399203-64399222 | None:intergenic | 45.0% | |
| AAGTATGTAGTGTGTGGCAG+AGG | - | chr3.2:64398613-64398632 | MS.gene69215:intron | 45.0% | |
| ACGCATGGAATTCCATTGTC+AGG | + | chr3.2:64400736-64400755 | None:intergenic | 45.0% | |
| AGTATGTAGTGTGTGGCAGA+GGG | - | chr3.2:64398614-64398633 | MS.gene69215:intron | 45.0% | |
| ATCCGCTGTTCAGATCATTG+AGG | - | chr3.2:64398129-64398148 | MS.gene69215:intron | 45.0% | |
| CACTGATAACTCAGCAAGCA+TGG | - | chr3.2:64397972-64397991 | MS.gene69215:CDS | 45.0% | |
| CCCTCACAAAATATGCTCAG+TGG | + | chr3.2:64399295-64399314 | None:intergenic | 45.0% | |
| CTGCCACACACTACATACTT+AGG | + | chr3.2:64398613-64398632 | None:intergenic | 45.0% | |
| GGACCTAAGTATGTAGTGTG+TGG | - | chr3.2:64398607-64398626 | MS.gene69215:intron | 45.0% | |
| GGCATGTGTCAGTGTTAGAT+GGG | - | chr3.2:64398309-64398328 | MS.gene69215:CDS | 45.0% | |
| GTAGGGCTTGTCGGAAAATA+TGG | - | chr3.2:64399214-64399233 | MS.gene69215:intron | 45.0% | |
| GTTCAGATCATTGAGGATGC+CGG | - | chr3.2:64398136-64398155 | MS.gene69215:intron | 45.0% | |
| TCAGAGAGGTCCTTGAGAAT+TGG | + | chr3.2:64400900-64400919 | None:intergenic | 45.0% | |
| TGGCATGTGTCAGTGTTAGA+TGG | - | chr3.2:64398308-64398327 | MS.gene69215:CDS | 45.0% | |
| TGTGTCTTCAAGGAAGCAGA+TGG | - | chr3.2:64400149-64400168 | MS.gene69215:intron | 45.0% | |
| TTATGCACCTGTGTGTCATG+TGG | + | chr3.2:64400778-64400797 | None:intergenic | 45.0% | |
| ! | CATGGAATGCAGTGTTGAGT+TGG | - | chr3.2:64397990-64398009 | MS.gene69215:CDS | 45.0% |
| ! | CTGTTTACTGCTGGTGTTGA+AGG | - | chr3.2:64400260-64400279 | MS.gene69215:intron | 45.0% |
| ! | GCTACTAGTTGTAGCTTGTG+CGG | - | chr3.2:64399058-64399077 | MS.gene69215:intron | 45.0% |
| !! | AAGCTTTGGGATGCGAGAAA+TGG | - | chr3.2:64399085-64399104 | MS.gene69215:intron | 45.0% |
| !! | ACTTAGCGAATTTGCTGACC+TGG | - | chr3.2:64400235-64400254 | MS.gene69215:intron | 45.0% |
| !! | TGGCTTTAGTGCAGGTTTAC+GGG | - | chr3.2:64398364-64398383 | MS.gene69215:intron | 45.0% |
| CACACACTTGTAGGGCTTGT+CGG | - | chr3.2:64399205-64399224 | MS.gene69215:intron | 50.0% | |
| CACCAGCAGTAAACAGAACC+AGG | + | chr3.2:64400256-64400275 | None:intergenic | 50.0% | |
| CTTGTGCGGTGAGAAGCTTT+GGG | - | chr3.2:64399072-64399091 | MS.gene69215:intron | 50.0% | |
| ! | CATACCGTGAGCTTTTGTGG+CGG | + | chr3.2:64398169-64398188 | None:intergenic | 50.0% |
| ! | CATGCGTACCATTTTCGGCA+GGG | - | chr3.2:64400749-64400768 | MS.gene69215:intron | 50.0% |
| !! | GACCTGGTTCTGTTTACTGC+TGG | - | chr3.2:64400251-64400270 | MS.gene69215:intron | 50.0% |
| AGGGCAACCACATGACACAC+AGG | - | chr3.2:64400768-64400787 | MS.gene69215:intron | 55.0% | |
| CATCTGTCTCGAACTGCGAC+AGG | + | chr3.2:64399115-64399134 | None:intergenic | 55.0% | |
| CCTGCCGAAAATGGTACGCA+TGG | + | chr3.2:64400751-64400770 | None:intergenic | 55.0% | |
| CGCAGTTCGAGACAGATGTG+TGG | - | chr3.2:64399117-64399136 | MS.gene69215:intron | 55.0% | |
| GCAACCGCCACAAAAGCTCA+CGG | - | chr3.2:64398162-64398181 | MS.gene69215:intron | 55.0% | |
| GCTTGTGCGGTGAGAAGCTT+TGG | - | chr3.2:64399071-64399090 | MS.gene69215:intron | 55.0% | |
| GTAGTGTGTGGCAGAGGGAA+AGG | - | chr3.2:64398619-64398638 | MS.gene69215:intron | 55.0% | |
| GTTACCGTCTTTGAACGCCC+CGG | - | chr3.2:64400191-64400210 | MS.gene69215:intron | 55.0% | |
| TGCAGGTTTACGGGCCTGTT+TGG | - | chr3.2:64398373-64398392 | MS.gene69215:intron | 55.0% | |
| TGTGGTTGCCCTGCCGAAAA+TGG | + | chr3.2:64400760-64400779 | None:intergenic | 55.0% | |
| TTACCGTCTTTGAACGCCCC+GGG | - | chr3.2:64400192-64400211 | MS.gene69215:intron | 55.0% | |
| ! | CCATGCGTACCATTTTCGGC+AGG | - | chr3.2:64400748-64400767 | MS.gene69215:intron | 55.0% |
| ! | CTTTTGTGGCGGTTGCTGAC+CGG | + | chr3.2:64398158-64398177 | None:intergenic | 55.0% |
| ! | CAACCCGGGGCGTTCAAAGA+CGG | + | chr3.2:64400198-64400217 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 64397965 | 64401004 | 64397965 | ID=MS.gene69215 |
| chr3.2 | mRNA | 64397965 | 64401004 | 64397965 | ID=MS.gene69215.t1;Parent=MS.gene69215 |
| chr3.2 | exon | 64400786 | 64401004 | 64400786 | ID=MS.gene69215.t1.exon1;Parent=MS.gene69215.t1 |
| chr3.2 | CDS | 64400786 | 64401004 | 64400786 | ID=cds.MS.gene69215.t1;Parent=MS.gene69215.t1 |
| chr3.2 | exon | 64398892 | 64399020 | 64398892 | ID=MS.gene69215.t1.exon2;Parent=MS.gene69215.t1 |
| chr3.2 | CDS | 64398892 | 64399020 | 64398892 | ID=cds.MS.gene69215.t1;Parent=MS.gene69215.t1 |
| chr3.2 | exon | 64398688 | 64398808 | 64398688 | ID=MS.gene69215.t1.exon3;Parent=MS.gene69215.t1 |
| chr3.2 | CDS | 64398688 | 64398808 | 64398688 | ID=cds.MS.gene69215.t1;Parent=MS.gene69215.t1 |
| chr3.2 | exon | 64398507 | 64398588 | 64398507 | ID=MS.gene69215.t1.exon4;Parent=MS.gene69215.t1 |
| chr3.2 | CDS | 64398507 | 64398588 | 64398507 | ID=cds.MS.gene69215.t1;Parent=MS.gene69215.t1 |
| chr3.2 | exon | 64398180 | 64398333 | 64398180 | ID=MS.gene69215.t1.exon5;Parent=MS.gene69215.t1 |
| chr3.2 | CDS | 64398180 | 64398333 | 64398180 | ID=cds.MS.gene69215.t1;Parent=MS.gene69215.t1 |
| chr3.2 | exon | 64397965 | 64398090 | 64397965 | ID=MS.gene69215.t1.exon6;Parent=MS.gene69215.t1 |
| chr3.2 | CDS | 64397965 | 64398090 | 64397965 | ID=cds.MS.gene69215.t1;Parent=MS.gene69215.t1 |
| Gene Sequence |
| Protein sequence |
