Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69320.t1 | XP_013462297.1 | 96.7 | 364 | 11 | 1 | 20 | 382 | 3 | 366 | 2.20E-209 | 738 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69320.t1 | Q8LAH7 | 68.9 | 366 | 109 | 1 | 20 | 380 | 5 | 370 | 3.9e-151 | 535.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69320.t1 | A0A072V3D1 | 96.7 | 364 | 11 | 1 | 20 | 382 | 3 | 366 | 1.6e-209 | 738.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050868 | MS.gene69320 | -0.800345 | 1.51E-48 | -1.69E-46 |
| MS.gene056387 | MS.gene69320 | -0.802463 | 5.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69320.t1 | MTR_3g115600 | 96.703 | 364 | 11 | 1 | 20 | 382 | 3 | 366 | 0.0 | 737 |
| MS.gene69320.t1 | MTR_5g006800 | 70.492 | 366 | 103 | 1 | 19 | 379 | 4 | 369 | 0.0 | 556 |
| MS.gene69320.t1 | MTR_5g006710 | 70.986 | 355 | 102 | 1 | 25 | 379 | 10 | 363 | 0.0 | 545 |
| MS.gene69320.t1 | MTR_5g006780 | 69.613 | 362 | 103 | 2 | 25 | 379 | 10 | 371 | 0.0 | 535 |
| MS.gene69320.t1 | MTR_5g006670 | 69.577 | 355 | 107 | 1 | 25 | 379 | 6 | 359 | 0.0 | 533 |
| MS.gene69320.t1 | MTR_5g008040 | 67.688 | 359 | 111 | 1 | 25 | 378 | 12 | 370 | 0.0 | 531 |
| MS.gene69320.t1 | MTR_5g006750 | 67.680 | 362 | 110 | 2 | 25 | 379 | 10 | 371 | 0.0 | 526 |
| MS.gene69320.t1 | MTR_5g006740 | 66.389 | 360 | 116 | 2 | 25 | 379 | 6 | 365 | 0.0 | 516 |
| MS.gene69320.t1 | MTR_5g006740 | 63.333 | 360 | 110 | 4 | 25 | 379 | 6 | 348 | 4.16e-169 | 476 |
| MS.gene69320.t1 | MTR_5g006720 | 60.108 | 371 | 105 | 3 | 25 | 379 | 9 | 352 | 1.41e-160 | 455 |
| MS.gene69320.t1 | MTR_4g125470 | 53.514 | 370 | 154 | 5 | 27 | 378 | 19 | 388 | 1.27e-137 | 398 |
| MS.gene69320.t1 | MTR_5g006730 | 80.189 | 106 | 21 | 0 | 25 | 130 | 10 | 115 | 4.32e-58 | 186 |
| MS.gene69320.t1 | MTR_3g096570 | 77.419 | 62 | 14 | 0 | 185 | 246 | 8 | 69 | 2.28e-26 | 106 |
| MS.gene69320.t1 | MTR_3g096562 | 66.667 | 72 | 24 | 0 | 175 | 246 | 162 | 233 | 4.52e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69320.t1 | AT1G76680 | 68.852 | 366 | 109 | 1 | 20 | 380 | 5 | 370 | 0.0 | 538 |
| MS.gene69320.t1 | AT1G76690 | 67.760 | 366 | 113 | 1 | 20 | 380 | 7 | 372 | 0.0 | 536 |
| MS.gene69320.t1 | AT1G76680 | 64.450 | 391 | 109 | 2 | 20 | 380 | 5 | 395 | 0.0 | 523 |
| MS.gene69320.t1 | AT1G09400 | 66.154 | 325 | 109 | 1 | 33 | 357 | 1 | 324 | 2.75e-164 | 463 |
| MS.gene69320.t1 | AT2G06050 | 52.139 | 374 | 157 | 4 | 27 | 378 | 12 | 385 | 7.04e-136 | 394 |
| MS.gene69320.t1 | AT2G06050 | 52.139 | 374 | 157 | 4 | 27 | 378 | 12 | 385 | 7.04e-136 | 394 |
| MS.gene69320.t1 | AT2G06050 | 52.139 | 374 | 157 | 4 | 27 | 378 | 12 | 385 | 7.04e-136 | 394 |
| MS.gene69320.t1 | AT1G09400 | 67.170 | 265 | 86 | 1 | 93 | 357 | 2 | 265 | 7.66e-134 | 384 |
| MS.gene69320.t1 | AT1G17990 | 65.251 | 259 | 88 | 2 | 19 | 276 | 1 | 258 | 2.07e-128 | 370 |
| MS.gene69320.t1 | AT1G18020 | 65.251 | 259 | 88 | 2 | 19 | 276 | 1 | 258 | 2.07e-128 | 370 |
| MS.gene69320.t1 | AT1G17990 | 62.548 | 259 | 87 | 3 | 19 | 276 | 1 | 250 | 7.81e-120 | 348 |
Find 102 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATACCAGGTGTATT+TGG | 0.127154 | 3.1:-91590183 | None:intergenic |
| CTGAAGTCATTGACAACTTT+TGG | 0.134544 | 3.1:-91591115 | None:intergenic |
| AAGGACCTTGTTCTTGTTAA+AGG | 0.178211 | 3.1:-91589576 | None:intergenic |
| TGTCGTTCACTTTGTCCTTT+AGG | 0.228951 | 3.1:-91591531 | None:intergenic |
| ACCCAAATACACCTGGTATT+TGG | 0.251049 | 3.1:+91590181 | MS.gene69320:CDS |
| GATCTTTCTCATGGGCATTA+AGG | 0.258096 | 3.1:-91591815 | None:intergenic |
| CTAATAATTACCTGCTTCTA+TGG | 0.268887 | 3.1:-91591155 | None:intergenic |
| TAGAATGACCAAAGCGATTA+TGG | 0.270247 | 3.1:+91589331 | MS.gene69320:CDS |
| TTCTTGATTGGGGAAGCCTC+AGG | 0.303380 | 3.1:+91589660 | MS.gene69320:CDS |
| TCCAATCTCAAGCACAAATA+AGG | 0.308704 | 3.1:+91591027 | MS.gene69320:CDS |
| TCTTATCAGCCTTGTTCAAT+TGG | 0.321623 | 3.1:-91591981 | None:intergenic |
| GGTGCGGATTTGGTAGCTTA+TGG | 0.322401 | 3.1:+91591907 | MS.gene69320:CDS |
| TACCAAATCCGCACCATTGC+TGG | 0.328132 | 3.1:-91591899 | None:intergenic |
| CAAAGGGTGGCTTCTTGATT+GGG | 0.332102 | 3.1:+91589649 | MS.gene69320:CDS |
| ACAAAGGGTGGCTTCTTGAT+TGG | 0.332916 | 3.1:+91589648 | MS.gene69320:CDS |
| GCATCCAACTCAAATCTTCT+AGG | 0.344741 | 3.1:-91591958 | None:intergenic |
| CTCTTCTTCCATAATCGCTT+TGG | 0.345327 | 3.1:-91589339 | None:intergenic |
| AATGGAACATTTATTGTTGC+TGG | 0.345581 | 3.1:+91591841 | MS.gene69320:CDS |
| TCCAAATACCAGGTGTATTT+GGG | 0.345635 | 3.1:-91590182 | None:intergenic |
| GCTAAGTCATTAAGTGAATT+AGG | 0.356165 | 3.1:+91591724 | MS.gene69320:CDS |
| GCCTTATTTGTGCTTGAGAT+TGG | 0.359941 | 3.1:-91591028 | None:intergenic |
| GGCCAGCAATGGTGCGGATT+TGG | 0.384528 | 3.1:+91591897 | MS.gene69320:CDS |
| TACACCAATGATCCTGTTGT+TGG | 0.393076 | 3.1:+91592012 | MS.gene69320:CDS |
| GAGATTGGAGGCTGTCCATC+TGG | 0.397247 | 3.1:-91591013 | None:intergenic |
| CTTATCAGCCTTGTTCAATT+GGG | 0.402003 | 3.1:-91591980 | None:intergenic |
| TCAAATCTTCTAGGAAGATC+TGG | 0.403955 | 3.1:-91591949 | None:intergenic |
| GACTCTAACCCTCATGCTTT+AGG | 0.410599 | 3.1:+91591691 | MS.gene69320:CDS |
| TTGTTGCTGGTGGATACAAT+AGG | 0.419806 | 3.1:+91591854 | MS.gene69320:CDS |
| CATGGGCATTAAGGACTCAT+TGG | 0.438978 | 3.1:-91591806 | None:intergenic |
| GTGGAGATACATGGAGCTAA+TGG | 0.442093 | 3.1:+91591490 | MS.gene69320:CDS |
| AAAGCAGTTGTTGATGAGAT+TGG | 0.442364 | 3.1:+91591613 | MS.gene69320:CDS |
| TCTTGATTGGGGAAGCCTCA+GGG | 0.444023 | 3.1:+91589661 | MS.gene69320:CDS |
| GAGAATAAGAAAGTGGTTGA+AGG | 0.446077 | 3.1:+91589359 | MS.gene69320:CDS |
| CCATGTTGTATGGGGTGAGA+AGG | 0.460955 | 3.1:-91589397 | None:intergenic |
| ATATCCAACAACAGGATCAT+TGG | 0.464074 | 3.1:-91592016 | None:intergenic |
| TTATTTGTGCTTGAGATTGG+AGG | 0.468685 | 3.1:-91591025 | None:intergenic |
| GCTGGAAGAGTGTCCAACTA+TGG | 0.469322 | 3.1:+91590288 | MS.gene69320:CDS |
| GTTGGAGCTGTTCATGAGAA+AGG | 0.473716 | 3.1:+91590237 | MS.gene69320:CDS |
| TCATGAACAGCTCCAACAAT+GGG | 0.476202 | 3.1:-91590231 | None:intergenic |
| TCAAACATGGTGCACATCCC+AGG | 0.477008 | 3.1:-91591772 | None:intergenic |
| CTTGCTTGATCAATTCCTAA+AGG | 0.484914 | 3.1:+91591516 | MS.gene69320:CDS |
| TATTCTCAACGAACAACAAA+GGG | 0.489010 | 3.1:+91589633 | MS.gene69320:CDS |
| TATTGTCATGTCATTGAACC+TGG | 0.489334 | 3.1:+91591754 | MS.gene69320:CDS |
| CTCATGAACAGCTCCAACAA+TGG | 0.489730 | 3.1:-91590232 | None:intergenic |
| TCCATTGAAGATCTTTCTCA+TGG | 0.490323 | 3.1:-91591824 | None:intergenic |
| CCCATGAGAAAGATCTTCAA+TGG | 0.491062 | 3.1:+91591823 | MS.gene69320:CDS |
| GTTGTGAGACGTCGAGGAGG+TGG | 0.497052 | 3.1:-91591082 | None:intergenic |
| CATGTTGTATGGGGTGAGAA+GGG | 0.498945 | 3.1:-91589396 | None:intergenic |
| TAATCAGTATATCCAACAAC+AGG | 0.503211 | 3.1:-91592024 | None:intergenic |
| CTAAAACCAGATACCATAGT+TGG | 0.509794 | 3.1:-91590301 | None:intergenic |
| GGAAGAAGAGAATAAGAAAG+TGG | 0.510295 | 3.1:+91589352 | MS.gene69320:CDS |
| GAAGCATGGAAACCCATTGT+TGG | 0.513600 | 3.1:+91590219 | MS.gene69320:CDS |
| TGGTATTTGGACAAGAGAAC+AGG | 0.514806 | 3.1:+91590194 | MS.gene69320:CDS |
| TCTTCCTAGAAGATTTGAGT+TGG | 0.518058 | 3.1:+91591954 | MS.gene69320:CDS |
| TTTGATGGAGTGGAGATACA+TGG | 0.518838 | 3.1:+91591481 | MS.gene69320:CDS |
| CATTCACAATAATCAGCATA+AGG | 0.519406 | 3.1:-91591664 | None:intergenic |
| CCTTCTCACCCCATACAACA+TGG | 0.541714 | 3.1:+91589397 | MS.gene69320:CDS |
| CTTGATTGGGGAAGCCTCAG+GGG | 0.545878 | 3.1:+91589662 | MS.gene69320:CDS |
| CGGATTTGGTAGCTTATGGA+AGG | 0.547082 | 3.1:+91591911 | MS.gene69320:CDS |
| AACGACAGAGATGATGAGTA+TGG | 0.548461 | 3.1:+91591547 | MS.gene69320:CDS |
| CCATTGAAGATCTTTCTCAT+GGG | 0.558552 | 3.1:-91591823 | None:intergenic |
| GGAACATTTATTGTTGCTGG+TGG | 0.563883 | 3.1:+91591844 | MS.gene69320:CDS |
| CAAGAGAACAGGTGGAAGCA+TGG | 0.564931 | 3.1:+91590205 | MS.gene69320:CDS |
| TGTTCTCTTGTCCAAATACC+AGG | 0.570132 | 3.1:-91590192 | None:intergenic |
| GAAAATTCAATCTGTCCCAC+AGG | 0.576865 | 3.1:+91589420 | MS.gene69320:CDS |
| AAAGGGTGGCTTCTTGATTG+GGG | 0.577699 | 3.1:+91589650 | MS.gene69320:CDS |
| TCGTTGTCGCTTCCCTCTAG+AGG | 0.579003 | 3.1:+91591585 | MS.gene69320:CDS |
| TTATTCTCAACGAACAACAA+AGG | 0.581092 | 3.1:+91589632 | MS.gene69320:CDS |
| TATGCTGATTATTGTGAATG+TGG | 0.581554 | 3.1:+91591667 | MS.gene69320:CDS |
| ACTGCTTTCACAACCTCTAG+AGG | 0.583197 | 3.1:-91591598 | None:intergenic |
| AACAATGTGTTGGCCAGCAA+TGG | 0.583715 | 3.1:+91591886 | MS.gene69320:CDS |
| TGAACAGGTTACCAACCAGA+TGG | 0.587082 | 3.1:+91590998 | MS.gene69320:intron |
| AGTTGTCAATGACTTCAGAA+TGG | 0.592608 | 3.1:+91591120 | MS.gene69320:CDS |
| GGTGGATACAATAGGACTGA+AGG | 0.596483 | 3.1:+91591862 | MS.gene69320:CDS |
| GGGGTCTCAGACACTGCACA+AGG | 0.597651 | 3.1:+91589681 | MS.gene69320:CDS |
| TTGGAGGCTGTCCATCTGGT+TGG | 0.600157 | 3.1:-91591009 | None:intergenic |
| TTGTGAGACGTCGAGGAGGT+GGG | 0.604708 | 3.1:-91591081 | None:intergenic |
| TGGTTGAGCAACGAAATTGA+AGG | 0.607262 | 3.1:-91589595 | None:intergenic |
| GACTGAAGGAAACAATGTGT+TGG | 0.609986 | 3.1:+91591876 | MS.gene69320:CDS |
| ACAGAGATGATGAGTATGGT+GGG | 0.612337 | 3.1:+91591551 | MS.gene69320:CDS |
| ATGTAGATGCCTAAAGCATG+AGG | 0.612576 | 3.1:-91591700 | None:intergenic |
| TCATGCTTTAGGCATCTACA+TGG | 0.616635 | 3.1:+91591702 | MS.gene69320:CDS |
| GAGATTGGAGCTGACAAAGT+TGG | 0.616749 | 3.1:+91591628 | MS.gene69320:CDS |
| CTGCTTTCACAACCTCTAGA+GGG | 0.620027 | 3.1:-91591597 | None:intergenic |
| GACAGAGATGATGAGTATGG+TGG | 0.624080 | 3.1:+91591550 | MS.gene69320:CDS |
| TCATCGGTTGTGAGACGTCG+AGG | 0.630333 | 3.1:-91591088 | None:intergenic |
| ATGTTGTATGGGGTGAGAAG+GGG | 0.635447 | 3.1:-91589395 | None:intergenic |
| ATTGTCATGTCATTGAACCT+GGG | 0.637262 | 3.1:+91591755 | MS.gene69320:CDS |
| TTGCACCTTTAACAAGAACA+AGG | 0.637602 | 3.1:+91589571 | MS.gene69320:CDS |
| TCTCAACGAACAACAAAGGG+TGG | 0.642936 | 3.1:+91589636 | MS.gene69320:CDS |
| AATAAGGCACTACAAAAGCA+AGG | 0.645729 | 3.1:+91591043 | MS.gene69320:CDS |
| TGAAGGTACCCAAATACACC+TGG | 0.648170 | 3.1:+91590174 | MS.gene69320:intron |
| TGCAGTGTCTGAGACCCCTG+AGG | 0.651692 | 3.1:-91589676 | None:intergenic |
| TATTTGGACAAGAGAACAGG+TGG | 0.653872 | 3.1:+91590197 | MS.gene69320:CDS |
| GTTGGATGCCCAATTGAACA+AGG | 0.658985 | 3.1:+91591972 | MS.gene69320:CDS |
| CTTCTCACCCCATACAACAT+GGG | 0.659177 | 3.1:+91589398 | MS.gene69320:CDS |
| GGAGCTGTTCATGAGAAAGG+AGG | 0.677401 | 3.1:+91590240 | MS.gene69320:CDS |
| TGTAGATGCCTAAAGCATGA+GGG | 0.695124 | 3.1:-91591699 | None:intergenic |
| TGTGTTGGCCAGCAATGGTG+CGG | 0.698432 | 3.1:+91591891 | MS.gene69320:CDS |
| GAATAATAAAGAGCAGCATG+TGG | 0.702052 | 3.1:-91589615 | None:intergenic |
| TCGGTTGTGAGACGTCGAGG+AGG | 0.709608 | 3.1:-91591085 | None:intergenic |
| GGGTCTCAGACACTGCACAA+GGG | 0.738404 | 3.1:+91589682 | MS.gene69320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAACTAAAATAAATAC+AGG | + | chr3.1:91591457-91591476 | MS.gene69320:intron | 10.0% |
| !!! | AAAGATTTTTTAAAAAGTAA+TGG | + | chr3.1:91590668-91590687 | MS.gene69320:intron | 10.0% |
| !!! | AAAGATTTTTTTAAAACTAA+TGG | - | chr3.1:91590408-91590427 | None:intergenic | 10.0% |
| !!! | AAGATTTTTTAAAAAGTAAT+GGG | + | chr3.1:91590669-91590688 | MS.gene69320:intron | 10.0% |
| !!! | AAGATTTTTTTAAAACTAAT+GGG | - | chr3.1:91590407-91590426 | None:intergenic | 10.0% |
| !!! | ATTACTTTTTAAAAAATCTT+TGG | - | chr3.1:91590669-91590688 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAAAAATCTT+TGG | + | chr3.1:91590407-91590426 | MS.gene69320:intron | 10.0% |
| !!! | TTACTTTTTAAAAAATCTTT+GGG | - | chr3.1:91590668-91590687 | None:intergenic | 10.0% |
| !!! | TTAGTTTTAAAAAAATCTTT+GGG | + | chr3.1:91590408-91590427 | MS.gene69320:intron | 10.0% |
| !! | TAAATAAATTATTTACCTGT+GGG | - | chr3.1:91589438-91589457 | None:intergenic | 15.0% |
| !! | TGCAATATCAATTTATTATT+TGG | + | chr3.1:91591178-91591197 | MS.gene69320:intron | 15.0% |
| !! | TTCTTAGATAAAATAATTCT+TGG | + | chr3.1:91590893-91590912 | MS.gene69320:intron | 15.0% |
| !!! | AAATAACATCTCTATTTTTT+TGG | + | chr3.1:91589774-91589793 | MS.gene69320:intron | 15.0% |
| !!! | AATAACATCTCTATTTTTTT+GGG | + | chr3.1:91589775-91589794 | MS.gene69320:intron | 15.0% |
| !!! | ACAAATTTTATTGTTAACAT+TGG | - | chr3.1:91590011-91590030 | None:intergenic | 15.0% |
| !!! | ATTGTAAAAATGTTTTTTGT+AGG | - | chr3.1:91589851-91589870 | None:intergenic | 15.0% |
| !!! | GTGTTTTATTACATTAAAAT+GGG | + | chr3.1:91590770-91590789 | MS.gene69320:intron | 15.0% |
| !!! | TACAAAAAACATTTTTACAA+TGG | + | chr3.1:91589850-91589869 | MS.gene69320:intron | 15.0% |
| !!! | TGTGTTTTATTACATTAAAA+TGG | + | chr3.1:91590769-91590788 | MS.gene69320:intron | 15.0% |
| !! | ACAATGAATAGTTACAATAT+AGG | - | chr3.1:91590075-91590094 | None:intergenic | 20.0% |
| !! | ACTAAACAATTTACTTCAAA+TGG | + | chr3.1:91590844-91590863 | MS.gene69320:intron | 20.0% |
| !! | ATAAAATTGTAATATCATGC+AGG | + | chr3.1:91591272-91591291 | MS.gene69320:intron | 20.0% |
| !! | CTAAATAAATTATTTACCTG+TGG | - | chr3.1:91589439-91589458 | None:intergenic | 20.0% |
| !! | TAAAATTGTAATATCATGCA+GGG | + | chr3.1:91591273-91591292 | MS.gene69320:intron | 20.0% |
| !! | TATTAAAAGACGAATTGTTT+AGG | + | chr3.1:91590451-91590470 | MS.gene69320:intron | 20.0% |
| !!! | AAAATAAATACAGGTTTTGA+TGG | + | chr3.1:91591466-91591485 | MS.gene69320:intron | 20.0% |
| ! | AACGTTCTATCGATATATAT+AGG | - | chr3.1:91590976-91590995 | None:intergenic | 25.0% |
| ! | TGGTTAATAAACTAAGAACT+CGG | + | chr3.1:91590864-91590883 | MS.gene69320:intron | 25.0% |
| !! | CCATCAAATAATCTAAAGTT+CGG | - | chr3.1:91590536-91590555 | None:intergenic | 25.0% |
| AAAAACTGATGACACAAACA+AGG | - | chr3.1:91590489-91590508 | None:intergenic | 30.0% | |
| AAGTTCAATTCAATGTGATG+AGG | - | chr3.1:91589478-91589497 | None:intergenic | 30.0% | |
| AATGGAACATTTATTGTTGC+TGG | + | chr3.1:91591841-91591860 | MS.gene69320:CDS | 30.0% | |
| AGTTCAATTCAATGTGATGA+GGG | - | chr3.1:91589477-91589496 | None:intergenic | 30.0% | |
| ATGAGCTTGAGAACAAAAAT+AGG | - | chr3.1:91589720-91589739 | None:intergenic | 30.0% | |
| CATTCACAATAATCAGCATA+AGG | - | chr3.1:91591667-91591686 | None:intergenic | 30.0% | |
| CCGAACTTTAGATTATTTGA+TGG | + | chr3.1:91590533-91590552 | MS.gene69320:intron | 30.0% | |
| CTAATAATTACCTGCTTCTA+TGG | - | chr3.1:91591158-91591177 | None:intergenic | 30.0% | |
| CTCTAGTGTAATCTAATTAG+AGG | - | chr3.1:91591309-91591328 | None:intergenic | 30.0% | |
| GCTAAGTCATTAAGTGAATT+AGG | + | chr3.1:91591724-91591743 | MS.gene69320:CDS | 30.0% | |
| GTGTATATGTATGTAATGAC+TGG | + | chr3.1:91589874-91589893 | MS.gene69320:intron | 30.0% | |
| GTTTATGTTATAATTTCCCC+TGG | + | chr3.1:91590342-91590361 | MS.gene69320:intron | 30.0% | |
| TAATCAGTATATCCAACAAC+AGG | - | chr3.1:91592027-91592046 | None:intergenic | 30.0% | |
| TATTCTCAACGAACAACAAA+GGG | + | chr3.1:91589633-91589652 | MS.gene69320:CDS | 30.0% | |
| TGAGCTTGAGAACAAAAATA+GGG | - | chr3.1:91589719-91589738 | None:intergenic | 30.0% | |
| TTAGATCAAATGAGATGCAA+TGG | + | chr3.1:91589974-91589993 | MS.gene69320:intron | 30.0% | |
| TTATTCTCAACGAACAACAA+AGG | + | chr3.1:91589632-91589651 | MS.gene69320:CDS | 30.0% | |
| ! | CGAATTGTTTAGGAGAATTT+TGG | + | chr3.1:91590461-91590480 | MS.gene69320:intron | 30.0% |
| ! | TATGCTGATTATTGTGAATG+TGG | + | chr3.1:91591667-91591686 | MS.gene69320:CDS | 30.0% |
| ! | TGAAGTCATTGACAACTTTT+GGG | - | chr3.1:91591117-91591136 | None:intergenic | 30.0% |
| ! | TGAATTTTCCCATGTTGTAT+GGG | - | chr3.1:91589409-91589428 | None:intergenic | 30.0% |
| ! | TTGAATTTTCCCATGTTGTA+TGG | - | chr3.1:91589410-91589429 | None:intergenic | 30.0% |
| ! | TTTGAATCCTTGGTAATTGA+AGG | + | chr3.1:91590157-91590176 | MS.gene69320:intron | 30.0% |
| !! | CTAGTAGCATTTTCAAGAAA+TGG | - | chr3.1:91592051-91592070 | None:intergenic | 30.0% |
| !! | TCTCAATGTTTTTGAATCCT+TGG | + | chr3.1:91590147-91590166 | MS.gene69320:intron | 30.0% |
| !! | TTTTGTGTGTGTGTCTTATT+AGG | + | chr3.1:91589541-91589560 | MS.gene69320:intron | 30.0% |
| AAGGACCTTGTTCTTGTTAA+AGG | - | chr3.1:91589579-91589598 | None:intergenic | 35.0% | |
| ACATCATTGCTATGTATGCA+GGG | - | chr3.1:91591337-91591356 | None:intergenic | 35.0% | |
| AGAATTGTCTAACGCAAGTA+AGG | + | chr3.1:91590588-91590607 | MS.gene69320:intron | 35.0% | |
| AGTTGTCAATGACTTCAGAA+TGG | + | chr3.1:91591120-91591139 | MS.gene69320:CDS | 35.0% | |
| ATATCCAACAACAGGATCAT+TGG | - | chr3.1:91592019-91592038 | None:intergenic | 35.0% | |
| ATTGTCATGTCATTGAACCT+GGG | + | chr3.1:91591755-91591774 | MS.gene69320:CDS | 35.0% | |
| CCATTGAAGATCTTTCTCAT+GGG | - | chr3.1:91591826-91591845 | None:intergenic | 35.0% | |
| CTAAAACCAGATACCATAGT+TGG | - | chr3.1:91590304-91590323 | None:intergenic | 35.0% | |
| CTTGCTTGATCAATTCCTAA+AGG | + | chr3.1:91591516-91591535 | MS.gene69320:CDS | 35.0% | |
| GAATAATAAAGAGCAGCATG+TGG | - | chr3.1:91589618-91589637 | None:intergenic | 35.0% | |
| GAGAACAAAAATAGGGTAGT+TGG | - | chr3.1:91589712-91589731 | None:intergenic | 35.0% | |
| GAGAATAAGAAAGTGGTTGA+AGG | + | chr3.1:91589359-91589378 | MS.gene69320:CDS | 35.0% | |
| GGAAGAAGAGAATAAGAAAG+TGG | + | chr3.1:91589352-91589371 | MS.gene69320:CDS | 35.0% | |
| TACTTGCGTTAGACAATTCT+TGG | - | chr3.1:91590588-91590607 | None:intergenic | 35.0% | |
| TAGAATGACCAAAGCGATTA+TGG | + | chr3.1:91589331-91589350 | MS.gene69320:CDS | 35.0% | |
| TATTGTCATGTCATTGAACC+TGG | + | chr3.1:91591754-91591773 | MS.gene69320:CDS | 35.0% | |
| TCCAAATACCAGGTGTATTT+GGG | - | chr3.1:91590185-91590204 | None:intergenic | 35.0% | |
| TCCAATCTCAAGCACAAATA+AGG | + | chr3.1:91591027-91591046 | MS.gene69320:CDS | 35.0% | |
| TCCATTGAAGATCTTTCTCA+TGG | - | chr3.1:91591827-91591846 | None:intergenic | 35.0% | |
| TCTTCCTAGAAGATTTGAGT+TGG | + | chr3.1:91591954-91591973 | MS.gene69320:CDS | 35.0% | |
| TTATTTGTGCTTGAGATTGG+AGG | - | chr3.1:91591028-91591047 | None:intergenic | 35.0% | |
| TTGCACCTTTAACAAGAACA+AGG | + | chr3.1:91589571-91589590 | MS.gene69320:CDS | 35.0% | |
| ! | AAAGCAGTTGTTGATGAGAT+TGG | + | chr3.1:91591613-91591632 | MS.gene69320:CDS | 35.0% |
| ! | AATAAGGCACTACAAAAGCA+AGG | + | chr3.1:91591043-91591062 | MS.gene69320:CDS | 35.0% |
| ! | CTGAAGTCATTGACAACTTT+TGG | - | chr3.1:91591118-91591137 | None:intergenic | 35.0% |
| ! | GAATTTTCCCATGTTGTATG+GGG | - | chr3.1:91589408-91589427 | None:intergenic | 35.0% |
| ! | GCATATTCTTTTGTCAGCTT+TGG | + | chr3.1:91590262-91590281 | MS.gene69320:CDS | 35.0% |
| ! | TCAAATCTTCTAGGAAGATC+TGG | - | chr3.1:91591952-91591971 | None:intergenic | 35.0% |
| ! | TCGATAGAACGTTTTTGAAC+AGG | + | chr3.1:91590983-91591002 | MS.gene69320:intron | 35.0% |
| !! | AAATACAGGTTTTGATGGAG+TGG | + | chr3.1:91591471-91591490 | MS.gene69320:intron | 35.0% |
| !! | CTTATCAGCCTTGTTCAATT+GGG | - | chr3.1:91591983-91592002 | None:intergenic | 35.0% |
| !! | GGTGTCACATTTTTCAAACA+TGG | - | chr3.1:91591788-91591807 | None:intergenic | 35.0% |
| !! | TCTTATCAGCCTTGTTCAAT+TGG | - | chr3.1:91591984-91592003 | None:intergenic | 35.0% |
| !!! | GACAACTTTTGGGATTTCAT+CGG | - | chr3.1:91591107-91591126 | None:intergenic | 35.0% |
| AACGACAGAGATGATGAGTA+TGG | + | chr3.1:91591547-91591566 | MS.gene69320:CDS | 40.0% | |
| ACAGAGATGATGAGTATGGT+GGG | + | chr3.1:91591551-91591570 | MS.gene69320:CDS | 40.0% | |
| ACCCAAATACACCTGGTATT+TGG | + | chr3.1:91590181-91590200 | MS.gene69320:CDS | 40.0% | |
| ATGTAGATGCCTAAAGCATG+AGG | - | chr3.1:91591703-91591722 | None:intergenic | 40.0% | |
| CACATCATTGCTATGTATGC+AGG | - | chr3.1:91591338-91591357 | None:intergenic | 40.0% | |
| CCCATGAGAAAGATCTTCAA+TGG | + | chr3.1:91591823-91591842 | MS.gene69320:CDS | 40.0% | |
| CTCTTCTTCCATAATCGCTT+TGG | - | chr3.1:91589342-91589361 | None:intergenic | 40.0% | |
| GAAAATTCAATCTGTCCCAC+AGG | + | chr3.1:91589420-91589439 | MS.gene69320:CDS | 40.0% | |
| GACTGAAGGAAACAATGTGT+TGG | + | chr3.1:91591876-91591895 | MS.gene69320:CDS | 40.0% | |
| GATCTTTCTCATGGGCATTA+AGG | - | chr3.1:91591818-91591837 | None:intergenic | 40.0% | |
| GCATCCAACTCAAATCTTCT+AGG | - | chr3.1:91591961-91591980 | None:intergenic | 40.0% | |
| GGAACATTTATTGTTGCTGG+TGG | + | chr3.1:91591844-91591863 | MS.gene69320:CDS | 40.0% | |
| GTCAGATTTCGCTTATCATG+TGG | + | chr3.1:91590510-91590529 | MS.gene69320:intron | 40.0% | |
| GTCCAAATACCAGGTGTATT+TGG | - | chr3.1:91590186-91590205 | None:intergenic | 40.0% | |
| TACACCAATGATCCTGTTGT+TGG | + | chr3.1:91592012-91592031 | MS.gene69320:CDS | 40.0% | |
| TATTTGGACAAGAGAACAGG+TGG | + | chr3.1:91590197-91590216 | MS.gene69320:CDS | 40.0% | |
| TCATGAACAGCTCCAACAAT+GGG | - | chr3.1:91590234-91590253 | None:intergenic | 40.0% | |
| TGGTATTTGGACAAGAGAAC+AGG | + | chr3.1:91590194-91590213 | MS.gene69320:CDS | 40.0% | |
| TGGTTGAGCAACGAAATTGA+AGG | - | chr3.1:91589598-91589617 | None:intergenic | 40.0% | |
| TGTAGATGCCTAAAGCATGA+GGG | - | chr3.1:91591702-91591721 | None:intergenic | 40.0% | |
| TGTCGTTCACTTTGTCCTTT+AGG | - | chr3.1:91591534-91591553 | None:intergenic | 40.0% | |
| TGTTCTCTTGTCCAAATACC+AGG | - | chr3.1:91590195-91590214 | None:intergenic | 40.0% | |
| TTGGGTACCTTCAATTACCA+AGG | - | chr3.1:91590167-91590186 | None:intergenic | 40.0% | |
| TTTGATGGAGTGGAGATACA+TGG | + | chr3.1:91591481-91591500 | MS.gene69320:CDS | 40.0% | |
| ! | ACCTGCTTCTATGGCATTTT+TGG | - | chr3.1:91591149-91591168 | None:intergenic | 40.0% |
| ! | AGCTTATGGAAGGCTCTTTT+TGG | + | chr3.1:91591921-91591940 | MS.gene69320:CDS | 40.0% |
| ! | CCCCTGGATTAGAAACAATA+CGG | + | chr3.1:91590358-91590377 | MS.gene69320:intron | 40.0% |
| ! | CCCTGGATTAGAAACAATAC+GGG | + | chr3.1:91590359-91590378 | MS.gene69320:intron | 40.0% |
| ! | TCATGCTTTAGGCATCTACA+TGG | + | chr3.1:91591702-91591721 | MS.gene69320:CDS | 40.0% |
| ! | TTGTTGCTGGTGGATACAAT+AGG | + | chr3.1:91591854-91591873 | MS.gene69320:CDS | 40.0% |
| !! | CCCGTATTGTTTCTAATCCA+GGG | - | chr3.1:91590362-91590381 | None:intergenic | 40.0% |
| !! | CCGTATTGTTTCTAATCCAG+GGG | - | chr3.1:91590361-91590380 | None:intergenic | 40.0% |
| !! | GCCTTATTTGTGCTTGAGAT+TGG | - | chr3.1:91591031-91591050 | None:intergenic | 40.0% |
| AAAGGGTGGCTTCTTGATTG+GGG | + | chr3.1:91589650-91589669 | MS.gene69320:CDS | 45.0% | |
| AATGTGATGAGGGTCTGTCT+AGG | - | chr3.1:91589467-91589486 | None:intergenic | 45.0% | |
| ACAAAGGGTGGCTTCTTGAT+TGG | + | chr3.1:91589648-91589667 | MS.gene69320:CDS | 45.0% | |
| ACTGCTTTCACAACCTCTAG+AGG | - | chr3.1:91591601-91591620 | None:intergenic | 45.0% | |
| ATGTTGTATGGGGTGAGAAG+GGG | - | chr3.1:91589398-91589417 | None:intergenic | 45.0% | |
| CAAAGGGTGGCTTCTTGATT+GGG | + | chr3.1:91589649-91589668 | MS.gene69320:CDS | 45.0% | |
| CATGGGCATTAAGGACTCAT+TGG | - | chr3.1:91591809-91591828 | None:intergenic | 45.0% | |
| CATGTTGTATGGGGTGAGAA+GGG | - | chr3.1:91589399-91589418 | None:intergenic | 45.0% | |
| CTCATGAACAGCTCCAACAA+TGG | - | chr3.1:91590235-91590254 | None:intergenic | 45.0% | |
| CTGCTTTCACAACCTCTAGA+GGG | - | chr3.1:91591600-91591619 | None:intergenic | 45.0% | |
| CTTCTCACCCCATACAACAT+GGG | + | chr3.1:91589398-91589417 | MS.gene69320:CDS | 45.0% | |
| GAAGCATGGAAACCCATTGT+TGG | + | chr3.1:91590219-91590238 | MS.gene69320:CDS | 45.0% | |
| GACAGAGATGATGAGTATGG+TGG | + | chr3.1:91591550-91591569 | MS.gene69320:CDS | 45.0% | |
| GACTCTAACCCTCATGCTTT+AGG | + | chr3.1:91591691-91591710 | MS.gene69320:CDS | 45.0% | |
| GAGATTGGAGCTGACAAAGT+TGG | + | chr3.1:91591628-91591647 | MS.gene69320:CDS | 45.0% | |
| GAGTGTCCAACTATGGTATC+TGG | + | chr3.1:91590295-91590314 | MS.gene69320:intron | 45.0% | |
| GCCAAAAATGCCATAGAAGC+AGG | + | chr3.1:91591145-91591164 | MS.gene69320:CDS | 45.0% | |
| GGTGGATACAATAGGACTGA+AGG | + | chr3.1:91591862-91591881 | MS.gene69320:CDS | 45.0% | |
| GTGGAGATACATGGAGCTAA+TGG | + | chr3.1:91591490-91591509 | MS.gene69320:CDS | 45.0% | |
| GTTGGAGCTGTTCATGAGAA+AGG | + | chr3.1:91590237-91590256 | MS.gene69320:CDS | 45.0% | |
| GTTGGATGCCCAATTGAACA+AGG | + | chr3.1:91591972-91591991 | MS.gene69320:CDS | 45.0% | |
| TCTCAACGAACAACAAAGGG+TGG | + | chr3.1:91589636-91589655 | MS.gene69320:CDS | 45.0% | |
| TGAACAGGTTACCAACCAGA+TGG | + | chr3.1:91590998-91591017 | MS.gene69320:intron | 45.0% | |
| ! | AACAATGTGTTGGCCAGCAA+TGG | + | chr3.1:91591886-91591905 | MS.gene69320:CDS | 45.0% |
| ! | CGGATTTGGTAGCTTATGGA+AGG | + | chr3.1:91591911-91591930 | MS.gene69320:CDS | 45.0% |
| !! | GCCCGTATTGTTTCTAATCC+AGG | - | chr3.1:91590363-91590382 | None:intergenic | 45.0% |
| !! | TGAAGGTACCCAAATACACC+TGG | + | chr3.1:91590174-91590193 | MS.gene69320:intron | 45.0% |
| CAAGAGAACAGGTGGAAGCA+TGG | + | chr3.1:91590205-91590224 | MS.gene69320:CDS | 50.0% | |
| CCATGTTGTATGGGGTGAGA+AGG | - | chr3.1:91589400-91589419 | None:intergenic | 50.0% | |
| CCTTCTCACCCCATACAACA+TGG | + | chr3.1:91589397-91589416 | MS.gene69320:CDS | 50.0% | |
| GGAGCTGTTCATGAGAAAGG+AGG | + | chr3.1:91590240-91590259 | MS.gene69320:CDS | 50.0% | |
| TACCAAATCCGCACCATTGC+TGG | - | chr3.1:91591902-91591921 | None:intergenic | 50.0% | |
| TCAAACATGGTGCACATCCC+AGG | - | chr3.1:91591775-91591794 | None:intergenic | 50.0% | |
| TCTTGATTGGGGAAGCCTCA+GGG | + | chr3.1:91589661-91589680 | MS.gene69320:CDS | 50.0% | |
| TTCTTGATTGGGGAAGCCTC+AGG | + | chr3.1:91589660-91589679 | MS.gene69320:CDS | 50.0% | |
| ! | GGTGCGGATTTGGTAGCTTA+TGG | + | chr3.1:91591907-91591926 | MS.gene69320:CDS | 50.0% |
| !! | GCTGGAAGAGTGTCCAACTA+TGG | + | chr3.1:91590288-91590307 | MS.gene69320:CDS | 50.0% |
| !! | TTTTGTCAGCTTTGGCACGC+TGG | + | chr3.1:91590270-91590289 | MS.gene69320:CDS | 50.0% |
| CTTGATTGGGGAAGCCTCAG+GGG | + | chr3.1:91589662-91589681 | MS.gene69320:CDS | 55.0% | |
| GAGATTGGAGGCTGTCCATC+TGG | - | chr3.1:91591016-91591035 | None:intergenic | 55.0% | |
| GGGTCTCAGACACTGCACAA+GGG | + | chr3.1:91589682-91589701 | MS.gene69320:CDS | 55.0% | |
| TTGGAGGCTGTCCATCTGGT+TGG | - | chr3.1:91591012-91591031 | None:intergenic | 55.0% | |
| TTGTGAGACGTCGAGGAGGT+GGG | - | chr3.1:91591084-91591103 | None:intergenic | 55.0% | |
| ! | TCATCGGTTGTGAGACGTCG+AGG | - | chr3.1:91591091-91591110 | None:intergenic | 55.0% |
| ! | TCGTTGTCGCTTCCCTCTAG+AGG | + | chr3.1:91591585-91591604 | MS.gene69320:CDS | 55.0% |
| ! | TGTGTTGGCCAGCAATGGTG+CGG | + | chr3.1:91591891-91591910 | MS.gene69320:CDS | 55.0% |
| GGCCAGCAATGGTGCGGATT+TGG | + | chr3.1:91591897-91591916 | MS.gene69320:CDS | 60.0% | |
| GGGGTCTCAGACACTGCACA+AGG | + | chr3.1:91589681-91589700 | MS.gene69320:CDS | 60.0% | |
| GTTGTGAGACGTCGAGGAGG+TGG | - | chr3.1:91591085-91591104 | None:intergenic | 60.0% | |
| TCGGTTGTGAGACGTCGAGG+AGG | - | chr3.1:91591088-91591107 | None:intergenic | 60.0% | |
| ! | TGCAGTGTCTGAGACCCCTG+AGG | - | chr3.1:91589679-91589698 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 91589320 | 91592074 | 91589320 | ID=MS.gene69320 |
| chr3.1 | mRNA | 91589320 | 91592074 | 91589320 | ID=MS.gene69320.t1;Parent=MS.gene69320 |
| chr3.1 | exon | 91589320 | 91589441 | 91589320 | ID=MS.gene69320.t1.exon1;Parent=MS.gene69320.t1 |
| chr3.1 | CDS | 91589320 | 91589441 | 91589320 | ID=cds.MS.gene69320.t1;Parent=MS.gene69320.t1 |
| chr3.1 | exon | 91589563 | 91589703 | 91589563 | ID=MS.gene69320.t1.exon2;Parent=MS.gene69320.t1 |
| chr3.1 | CDS | 91589563 | 91589703 | 91589563 | ID=cds.MS.gene69320.t1;Parent=MS.gene69320.t1 |
| chr3.1 | exon | 91590179 | 91590309 | 91590179 | ID=MS.gene69320.t1.exon3;Parent=MS.gene69320.t1 |
| chr3.1 | CDS | 91590179 | 91590309 | 91590179 | ID=cds.MS.gene69320.t1;Parent=MS.gene69320.t1 |
| chr3.1 | exon | 91591005 | 91591166 | 91591005 | ID=MS.gene69320.t1.exon4;Parent=MS.gene69320.t1 |
| chr3.1 | CDS | 91591005 | 91591166 | 91591005 | ID=cds.MS.gene69320.t1;Parent=MS.gene69320.t1 |
| chr3.1 | exon | 91591479 | 91592074 | 91591479 | ID=MS.gene69320.t1.exon5;Parent=MS.gene69320.t1 |
| chr3.1 | CDS | 91591479 | 91592074 | 91591479 | ID=cds.MS.gene69320.t1;Parent=MS.gene69320.t1 |
| Gene Sequence |
| Protein sequence |
