AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050868


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050868.t1 MTR_7g113530 97.653 213 5 0 10 222 38 250 3.21e-157 439
MS.gene050868.t1 MTR_2g083920 29.612 206 122 7 23 217 72 265 1.35e-15 75.5
MS.gene050868.t1 MTR_2g083920 32.099 162 98 5 23 178 72 227 2.43e-15 75.5
MS.gene050868.t1 MTR_4g080350 29.012 162 103 5 23 178 74 229 1.40e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050868.t1 AT3G05345 69.767 215 60 4 9 222 33 243 5.06e-107 311
MS.gene050868.t1 AT2G42750 32.716 162 97 5 23 178 78 233 4.72e-15 75.1

Find 72 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATCACAGAGAATTATTT+TGG 0.134244 7.1:+2914249 MS.gene050868:CDS
AACATGCTGGGTTGAAAATT+TGG 0.174458 7.1:-2914684 None:intergenic
TCGAAAAGCGGCTTTAATTT+CGG 0.279196 7.1:-2913126 None:intergenic
TTTGGTGTTTGGTTTCTCTA+TGG 0.303094 7.1:+2915286 MS.gene050868:CDS
TTCACATTTGTCTCTTCAAC+TGG 0.307988 7.1:+2913959 MS.gene050868:CDS
ACTTTGACATAATCTTCCTT+AGG 0.356859 7.1:-2915191 None:intergenic
GTTATTCTCAAACTTAGCTT+TGG 0.385126 7.1:-2914636 None:intergenic
CTACGGATGAATTTGGTGTT+TGG 0.396165 7.1:+2915275 MS.gene050868:CDS
TGTGGTTGACTTTGGGATCA+AGG 0.398210 7.1:+2915229 MS.gene050868:CDS
GTGTGTGCTACGGATGAATT+TGG 0.398410 7.1:+2915268 MS.gene050868:CDS
TGCCTCAGCTGATGTATCAT+AGG 0.402393 7.1:-2914591 None:intergenic
GGTTCACTTCACCCCTCCTA+TGG 0.409915 7.1:+2912874 MS.gene050868:CDS
ATGGTTCTGTGGTTGACTTT+GGG 0.411324 7.1:+2915222 MS.gene050868:CDS
CATCTCTGTTGAGGTCTGGA+TGG 0.429052 7.1:-2913254 None:intergenic
ATTTCGGCGGCTGAGCAGTT+AGG 0.433399 7.1:-2913110 None:intergenic
CCAAAATAATTCTCTGTGAT+GGG 0.435014 7.1:-2914249 None:intergenic
GATGGTTCTGTGGTTGACTT+TGG 0.437474 7.1:+2915221 MS.gene050868:CDS
ACATAATGAATGCAACTTCT+CGG 0.437627 7.1:-2914223 None:intergenic
TCCAAAATAATTCTCTGTGA+TGG 0.443344 7.1:-2914250 None:intergenic
CTTTGACATAATCTTCCTTA+GGG 0.465160 7.1:-2915190 None:intergenic
GTTAATGAGTTTCTTTGTGT+CGG 0.474240 7.1:+2913643 MS.gene050868:CDS
GTCCAACAGCACACTGAACT+TGG 0.476520 7.1:-2914195 None:intergenic
AATTTGTGATGGTGTGTAGT+TGG 0.477410 7.1:-2913459 None:intergenic
AACAACTGTTTATAGGTCAT+GGG 0.479720 7.1:+2914164 MS.gene050868:intron
CATAATGAATGCAACTTCTC+GGG 0.481674 7.1:-2914222 None:intergenic
ACGTAATACAACCACAATGA+TGG 0.482587 7.1:-2915324 None:intergenic
TCCTCTGCTTACACCGTCCT+CGG 0.486253 7.1:+2913080 MS.gene050868:CDS
TTTCAACCCAGCATGTTGAC+TGG 0.504611 7.1:+2914690 MS.gene050868:CDS
TACCAAGTTCAGTGTGCTGT+TGG 0.507441 7.1:+2914193 MS.gene050868:CDS
ATCTTCCTTAGGGTTACTCC+AGG 0.507761 7.1:-2915180 None:intergenic
TTCACACTCTGGTCTGTCAA+AGG 0.509595 7.1:-2913605 None:intergenic
TCGACTTACTTTCCCATAGG+AGG 0.511597 7.1:-2912887 None:intergenic
GACGGTGTAAGCAGAGGAAG+TGG 0.512906 7.1:-2913075 None:intergenic
TCACACTCTGGTCTGTCAAA+GGG 0.522302 7.1:-2913604 None:intergenic
TACGTTTCAATAATTTGTGA+TGG 0.522555 7.1:-2913470 None:intergenic
CGACTTACTTTCCCATAGGA+GGG 0.524856 7.1:-2912886 None:intergenic
CCGTGTAATTCAAGCATACC+AGG 0.525324 7.1:+2913308 MS.gene050868:CDS
TTTCAGAATACTGAGGTGTA+AGG 0.526250 7.1:-2914822 None:intergenic
AGATCAAAAGCTTCACACTC+TGG 0.531042 7.1:-2913616 None:intergenic
CGGCGGCTGAGCAGTTAGGT+TGG 0.531621 7.1:-2913106 None:intergenic
AATTGCAGAGGCAGAGAAGA+TGG 0.533070 7.1:+2913044 MS.gene050868:intron
GCTAAAACCAGTCAACATGC+TGG 0.539656 7.1:-2914697 None:intergenic
GCCTCAGCTGATGTATCATA+GGG 0.543724 7.1:-2914590 None:intergenic
TGACTCTTATTCCATCATTG+TGG 0.547489 7.1:+2915313 MS.gene050868:CDS
ACCATGCTAATACTGCTGCC+TGG 0.549143 7.1:+2915162 MS.gene050868:CDS
ACTTCGACTTACTTTCCCAT+AGG 0.554474 7.1:-2912890 None:intergenic
GACTTACTTTCCCATAGGAG+GGG 0.555773 7.1:-2912885 None:intergenic
GTTCACTTCACCCCTCCTAT+GGG 0.564229 7.1:+2912875 MS.gene050868:CDS
TATGTCAAAGTCAATTGTGA+TGG 0.565976 7.1:+2915203 MS.gene050868:CDS
GAGTTTCTTTGTGTCGGCAA+AGG 0.566077 7.1:+2913649 MS.gene050868:CDS
CTGTGGTGGTGTGTGTGCTA+CGG 0.586058 7.1:+2915258 MS.gene050868:CDS
CTAAAACCAGTCAACATGCT+GGG 0.591004 7.1:-2914696 None:intergenic
CAAAATAATTCTCTGTGATG+GGG 0.597740 7.1:-2914248 None:intergenic
TGCTGCCTGGAGTAACCCTA+AGG 0.606377 7.1:+2915175 MS.gene050868:CDS
TCCAGGCAGCAGTATTAGCA+TGG 0.618759 7.1:-2915163 None:intergenic
ACAGCACGTGCATCTTCTCA+AGG 0.621543 7.1:+2913983 MS.gene050868:CDS
TGATACTTTGGATCGAAAAG+CGG 0.622876 7.1:-2913138 None:intergenic
GTTAGGTTGGACTCCGAGGA+CGG 0.622942 7.1:-2913093 None:intergenic
AGTCAATTGTGATGGTTCTG+TGG 0.623540 7.1:+2915211 MS.gene050868:CDS
TCCGAGGACGGTGTAAGCAG+AGG 0.625114 7.1:-2913081 None:intergenic
CCTGGTATGCTTGAATTACA+CGG 0.626987 7.1:-2913308 None:intergenic
ACAACTGTTTATAGGTCATG+GGG 0.627093 7.1:+2914165 MS.gene050868:intron
AGCAGTTAGGTTGGACTCCG+AGG 0.631176 7.1:-2913097 None:intergenic
ATGAGGTGCTCTTTCCACAC+AGG 0.664251 7.1:-2913933 None:intergenic
ACCCTATGATACATCAGCTG+AGG 0.667271 7.1:+2914589 MS.gene050868:CDS
TAAGCAGAGGAAGTGGACAG+AGG 0.671934 7.1:-2913068 None:intergenic
TTACATGTTTCAGAATACTG+AGG 0.676400 7.1:-2914829 None:intergenic
AAAAGCGGCTTTAATTTCGG+CGG 0.695406 7.1:-2913123 None:intergenic
GAGACAAATGTGAAAGCATG+AGG 0.702751 7.1:-2913950 None:intergenic
GATCAAGGCATATACTGTGG+TGG 0.711117 7.1:+2915244 MS.gene050868:CDS
TGGGATCAAGGCATATACTG+TGG 0.712148 7.1:+2915241 MS.gene050868:CDS
AGCTTGTTCAAATTCCTGTG+TGG 0.759817 7.1:+2913919 MS.gene050868:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAAAAATAAAAATTGT+AGG - chr7.1:2914314-2914333 None:intergenic 10.0%
!!! ACAATTTTTATTTTTTTACT+TGG + chr7.1:2914314-2914333 MS.gene050868:intron 10.0%
!! AAAGATAATATATTGACAAA+GGG - chr7.1:2914369-2914388 None:intergenic 15.0%
!! ATCTTTCTTATAAAACTAAA+AGG + chr7.1:2914383-2914402 MS.gene050868:intron 15.0%
!! ATGATAGAAATAGATAAATA+GGG - chr7.1:2914433-2914452 None:intergenic 15.0%
!! TATGATAGAAATAGATAAAT+AGG - chr7.1:2914434-2914453 None:intergenic 15.0%
!!! ATTTTTATTTTTTTACTTGG+TGG + chr7.1:2914317-2914336 MS.gene050868:intron 15.0%
!!! TATAACATATTATTACCTTT+TGG + chr7.1:2914480-2914499 MS.gene050868:intron 15.0%
!!! TTCTCTTTAATTTATTACTT+AGG + chr7.1:2913221-2913240 MS.gene050868:intron 15.0%
!!! TTTTTATTTTTTTACTTGGT+GGG + chr7.1:2914318-2914337 MS.gene050868:intron 15.0%
!! AAAGGAAATAAGAAATCAAA+TGG - chr7.1:2914542-2914561 None:intergenic 20.0%
!! GAAAGATAATATATTGACAA+AGG - chr7.1:2914370-2914389 None:intergenic 20.0%
!! TAATGAATTTCTCAAAATGA+AGG - chr7.1:2914036-2914055 None:intergenic 20.0%
!! TTAAACTCATCAATGTAAAA+TGG - chr7.1:2913890-2913909 None:intergenic 20.0%
!!! CTTATTTTAAGATTTTGCAA+CGG + chr7.1:2914895-2914914 MS.gene050868:intron 20.0%
! AAACATTGTATGATTCCAAA+AGG - chr7.1:2914498-2914517 None:intergenic 25.0%
! AATGATTGATGTTGATACTT+TGG - chr7.1:2913153-2913172 None:intergenic 25.0%
! AATTTCTCAAAATGAAGGAA+GGG - chr7.1:2914031-2914050 None:intergenic 25.0%
! ACAATTTAGACCACATATAT+CGG + chr7.1:2913738-2913757 MS.gene050868:intron 25.0%
! ACATAATTTCATGTCATGTA+AGG - chr7.1:2913708-2913727 None:intergenic 25.0%
! ATAAATAGGGAAATTAAGCA+TGG - chr7.1:2914420-2914439 None:intergenic 25.0%
! ATACTGAAACATCAACAAAA+AGG - chr7.1:2914560-2914579 None:intergenic 25.0%
! CCGTAAATTTCAAAACAATA+CGG - chr7.1:2913519-2913538 None:intergenic 25.0%
! GCAGCTCATAAAAAATTTAT+TGG - chr7.1:2914793-2914812 None:intergenic 25.0%
! TATCTTCAACAACTGTTTAT+AGG + chr7.1:2914157-2914176 MS.gene050868:intron 25.0%
! TGAATTGAAGAGAATGAAAA+TGG - chr7.1:2913189-2913208 None:intergenic 25.0%
!! TACGTTTCAATAATTTGTGA+TGG - chr7.1:2913473-2913492 None:intergenic 25.0%
!!! ATTTTTTATGAGCTGCTTAT+AGG + chr7.1:2914797-2914816 MS.gene050868:intron 25.0%
!!! CCGTATTGTTTTGAAATTTA+CGG + chr7.1:2913516-2913535 MS.gene050868:intron 25.0%
!!! GAAAATTTGGTTTTCTTCTT+TGG - chr7.1:2914674-2914693 None:intergenic 25.0%
AAAAGTCATGTAGTGAGATT+TGG - chr7.1:2915014-2915033 None:intergenic 30.0%
AACAACTGTTTATAGGTCAT+GGG + chr7.1:2914164-2914183 MS.gene050868:intron 30.0%
AAGAATGAGTGAGTTTAAGA+AGG - chr7.1:2913349-2913368 None:intergenic 30.0%
ACATAATGAATGCAACTTCT+CGG - chr7.1:2914226-2914245 None:intergenic 30.0%
ACTTTGACATAATCTTCCTT+AGG - chr7.1:2915194-2915213 None:intergenic 30.0%
CAAAATAATTCTCTGTGATG+GGG - chr7.1:2914251-2914270 None:intergenic 30.0%
CCAAAATAATTCTCTGTGAT+GGG - chr7.1:2914252-2914271 None:intergenic 30.0%
CTTTGACATAATCTTCCTTA+GGG - chr7.1:2915193-2915212 None:intergenic 30.0%
GAATTTCTCAAAATGAAGGA+AGG - chr7.1:2914032-2914051 None:intergenic 30.0%
GTTAATGAGTTTCTTTGTGT+CGG + chr7.1:2913643-2913662 MS.gene050868:CDS 30.0%
GTTATTCTCAAACTTAGCTT+TGG - chr7.1:2914639-2914658 None:intergenic 30.0%
GTTTAAATCCTTTAGTCAGA+GGG + chr7.1:2915094-2915113 MS.gene050868:intron 30.0%
TATGTCAAAGTCAATTGTGA+TGG + chr7.1:2915203-2915222 MS.gene050868:CDS 30.0%
TCCAAAATAATTCTCTGTGA+TGG - chr7.1:2914253-2914272 None:intergenic 30.0%
TCTTTCAGTGAATGAATCAA+GGG + chr7.1:2914945-2914964 MS.gene050868:intron 30.0%
TGTAAGCTACTTACTACAAT+CGG + chr7.1:2914847-2914866 MS.gene050868:intron 30.0%
TTACATGTTTCAGAATACTG+AGG - chr7.1:2914832-2914851 None:intergenic 30.0%
TTCTTTCAGTGAATGAATCA+AGG + chr7.1:2914944-2914963 MS.gene050868:intron 30.0%
! AATTTTTCGTCATTTCCACA+AGG - chr7.1:2915037-2915056 None:intergenic 30.0%
! ATTTCTAATTTTTCCTGCCA+TGG + chr7.1:2915070-2915089 MS.gene050868:intron 30.0%
! TTCTTTAAAGACACAGACAA+AGG - chr7.1:2913011-2913030 None:intergenic 30.0%
! TTTCATTTTCATCTCTGTTG+AGG - chr7.1:2913266-2913285 None:intergenic 30.0%
!!! ATCACAGAGAATTATTTTGG+AGG + chr7.1:2914252-2914271 MS.gene050868:CDS 30.0%
!!! TTTTAAGATTTTGCAACGGA+TGG + chr7.1:2914899-2914918 MS.gene050868:intron 30.0%
AAAACAAGAACGAATTGCAG+AGG + chr7.1:2913032-2913051 MS.gene050868:intron 35.0%
ACAACTGTTTATAGGTCATG+GGG + chr7.1:2914165-2914184 MS.gene050868:intron 35.0%
ACGTAATACAACCACAATGA+TGG - chr7.1:2915327-2915346 None:intergenic 35.0%
ACTAAAGGATTTAAACGCCA+TGG - chr7.1:2915090-2915109 None:intergenic 35.0%
ACTATGCTGTATATGATGTG+TGG - chr7.1:2913386-2913405 None:intergenic 35.0%
CAACAACTGTTTATAGGTCA+TGG + chr7.1:2914163-2914182 MS.gene050868:intron 35.0%
CATAATGAATGCAACTTCTC+GGG - chr7.1:2914225-2914244 None:intergenic 35.0%
CGTTTAAATCCTTTAGTCAG+AGG + chr7.1:2915093-2915112 MS.gene050868:intron 35.0%
CTCAGTGCTATCTATAGTTT+GGG - chr7.1:2914741-2914760 None:intergenic 35.0%
GTAAGCTACTTACTACAATC+GGG + chr7.1:2914848-2914867 MS.gene050868:intron 35.0%
TCAGTGCTATCTATAGTTTG+GGG - chr7.1:2914740-2914759 None:intergenic 35.0%
TCTCAGTGCTATCTATAGTT+TGG - chr7.1:2914742-2914761 None:intergenic 35.0%
TGACTCTTATTCCATCATTG+TGG + chr7.1:2915313-2915332 MS.gene050868:CDS 35.0%
TGATACTTTGGATCGAAAAG+CGG - chr7.1:2913141-2913160 None:intergenic 35.0%
TTCACATTTGTCTCTTCAAC+TGG + chr7.1:2913959-2913978 MS.gene050868:CDS 35.0%
TTTCAGAATACTGAGGTGTA+AGG - chr7.1:2914825-2914844 None:intergenic 35.0%
! AACATGCTGGGTTGAAAATT+TGG - chr7.1:2914687-2914706 None:intergenic 35.0%
! AATTTGTGATGGTGTGTAGT+TGG - chr7.1:2913462-2913481 None:intergenic 35.0%
! CCCATCACAGAGAATTATTT+TGG + chr7.1:2914249-2914268 MS.gene050868:CDS 35.0%
! TATGATGTGTGGTAGTGAAT+AGG - chr7.1:2913375-2913394 None:intergenic 35.0%
! TCGAAAAGCGGCTTTAATTT+CGG - chr7.1:2913129-2913148 None:intergenic 35.0%
! TCTGCAGTAAAAAAGCATGA+AGG - chr7.1:2913433-2913452 None:intergenic 35.0%
!! ACAGTTGGTCTTACCATAAT+GGG + chr7.1:2912918-2912937 MS.gene050868:intron 35.0%
!! TTTGGTGTTTGGTTTCTCTA+TGG + chr7.1:2915286-2915305 MS.gene050868:CDS 35.0%
!!! TCTTCTTTGGCTTTTGGTAT+CGG - chr7.1:2914661-2914680 None:intergenic 35.0%
!!! TGCTGACTTTTCACTTTTCA+GGG + chr7.1:2913570-2913589 MS.gene050868:intron 35.0%
!!! TGGTTTTCTTCTTTGGCTTT+TGG - chr7.1:2914667-2914686 None:intergenic 35.0%
ACAATGTCTCAACGTCACTT+GGG + chr7.1:2913837-2913856 MS.gene050868:intron 40.0%
ACACAGACAAAGGAAAAGTG+CGG - chr7.1:2913001-2913020 None:intergenic 40.0%
ACACCTTTAATCTGCAAGTG+TGG + chr7.1:2913795-2913814 MS.gene050868:intron 40.0%
ACTTCGACTTACTTTCCCAT+AGG - chr7.1:2912893-2912912 None:intergenic 40.0%
AGATCAAAAGCTTCACACTC+TGG - chr7.1:2913619-2913638 None:intergenic 40.0%
ATGGGAAAGTAAGTCGAAGT+TGG + chr7.1:2912893-2912912 MS.gene050868:intron 40.0%
CCTGGTATGCTTGAATTACA+CGG - chr7.1:2913311-2913330 None:intergenic 40.0%
CTAAAACCAGTCAACATGCT+GGG - chr7.1:2914699-2914718 None:intergenic 40.0%
CTGAAAAGTGAAAAGTCAGC+AGG - chr7.1:2913571-2913590 None:intergenic 40.0%
TACAATGTCTCAACGTCACT+TGG + chr7.1:2913836-2913855 MS.gene050868:intron 40.0%
! AAAAGCGGCTTTAATTTCGG+CGG - chr7.1:2913126-2913145 None:intergenic 40.0%
! AGCTTGTTCAAATTCCTGTG+TGG + chr7.1:2913919-2913938 MS.gene050868:intron 40.0%
! AGTCAATTGTGATGGTTCTG+TGG + chr7.1:2915211-2915230 MS.gene050868:CDS 40.0%
! ATGGTTCTGTGGTTGACTTT+GGG + chr7.1:2915222-2915241 MS.gene050868:CDS 40.0%
! ATTAAAGGTGTGTCCAGTGT+AGG - chr7.1:2913786-2913805 None:intergenic 40.0%
! CACTACATGACTTTTCCTTG+TGG + chr7.1:2915019-2915038 MS.gene050868:intron 40.0%
! CTGTGTTTGATAACACTTGC+AGG + chr7.1:2915122-2915141 MS.gene050868:intron 40.0%
! GAGACAAATGTGAAAGCATG+AGG - chr7.1:2913953-2913972 None:intergenic 40.0%
! TAAGATTTTGCAACGGATGG+CGG + chr7.1:2914902-2914921 MS.gene050868:intron 40.0%
! TGTTTGATAACACTTGCAGG+TGG + chr7.1:2915125-2915144 MS.gene050868:intron 40.0%
! TTACCATAATGGGATCGTTC+AGG + chr7.1:2912928-2912947 MS.gene050868:intron 40.0%
! TTTTCATCTCTGTTGAGGTC+TGG - chr7.1:2913261-2913280 None:intergenic 40.0%
!! CACAGTTGGTCTTACCATAA+TGG + chr7.1:2912917-2912936 MS.gene050868:intron 40.0%
!! CTACGGATGAATTTGGTGTT+TGG + chr7.1:2915275-2915294 MS.gene050868:CDS 40.0%
!! TTTTGGAGGAGCTACTTAAC+AGG + chr7.1:2914266-2914285 MS.gene050868:CDS 40.0%
!!! CTGCTGACTTTTCACTTTTC+AGG + chr7.1:2913569-2913588 MS.gene050868:intron 40.0%
!!! TTTTTTTACTTGGTGGGCTG+TGG + chr7.1:2914324-2914343 MS.gene050868:intron 40.0%
AAGGATTTAAACGCCATGGC+AGG - chr7.1:2915086-2915105 None:intergenic 45.0%
AAGTCGAAGTTGGACACAGT+TGG + chr7.1:2912903-2912922 MS.gene050868:intron 45.0%
AATTGCAGAGGCAGAGAAGA+TGG + chr7.1:2913044-2913063 MS.gene050868:intron 45.0%
ACCCTATGATACATCAGCTG+AGG + chr7.1:2914589-2914608 MS.gene050868:CDS 45.0%
AGTTTGGGGAGTGAAGACAT+GGG - chr7.1:2914726-2914745 None:intergenic 45.0%
ATCTTCCTTAGGGTTACTCC+AGG - chr7.1:2915183-2915202 None:intergenic 45.0%
CAACCTGAACGATCCCATTA+TGG - chr7.1:2912934-2912953 None:intergenic 45.0%
CAAGCATACCAGGTACTACT+TGG + chr7.1:2913318-2913337 MS.gene050868:intron 45.0%
CCGTGTAATTCAAGCATACC+AGG + chr7.1:2913308-2913327 MS.gene050868:CDS 45.0%
CGACTTACTTTCCCATAGGA+GGG - chr7.1:2912889-2912908 None:intergenic 45.0%
GACTTACTTTCCCATAGGAG+GGG - chr7.1:2912888-2912907 None:intergenic 45.0%
GATCAAGGCATATACTGTGG+TGG + chr7.1:2915244-2915263 MS.gene050868:CDS 45.0%
GATTGCTGATGAGACAGTCA+TGG + chr7.1:2914760-2914779 MS.gene050868:intron 45.0%
GCCTCAGCTGATGTATCATA+GGG - chr7.1:2914593-2914612 None:intergenic 45.0%
GCTAAAACCAGTCAACATGC+TGG - chr7.1:2914700-2914719 None:intergenic 45.0%
GCTCCACACTTGCAGATTAA+AGG - chr7.1:2913801-2913820 None:intergenic 45.0%
GTGTGTGCTACGGATGAATT+TGG + chr7.1:2915268-2915287 MS.gene050868:CDS 45.0%
TACCAAGTTCAGTGTGCTGT+TGG + chr7.1:2914193-2914212 MS.gene050868:CDS 45.0%
TAGACCACATATATCGGTGC+AGG + chr7.1:2913744-2913763 MS.gene050868:intron 45.0%
TAGTTTGGGGAGTGAAGACA+TGG - chr7.1:2914727-2914746 None:intergenic 45.0%
TCACACTCTGGTCTGTCAAA+GGG - chr7.1:2913607-2913626 None:intergenic 45.0%
TCGACTTACTTTCCCATAGG+AGG - chr7.1:2912890-2912909 None:intergenic 45.0%
TGCCTCAGCTGATGTATCAT+AGG - chr7.1:2914594-2914613 None:intergenic 45.0%
TGGGATCAAGGCATATACTG+TGG + chr7.1:2915241-2915260 MS.gene050868:CDS 45.0%
TTCACACTCTGGTCTGTCAA+AGG - chr7.1:2913608-2913627 None:intergenic 45.0%
TTTCAACCCAGCATGTTGAC+TGG + chr7.1:2914690-2914709 MS.gene050868:CDS 45.0%
! AAGATTTTGCAACGGATGGC+GGG + chr7.1:2914903-2914922 MS.gene050868:intron 45.0%
! GAGTTTCTTTGTGTCGGCAA+AGG + chr7.1:2913649-2913668 MS.gene050868:CDS 45.0%
! GATGGTTCTGTGGTTGACTT+TGG + chr7.1:2915221-2915240 MS.gene050868:CDS 45.0%
! TTCTTTGTGTCGGCAAAGGT+AGG + chr7.1:2913653-2913672 MS.gene050868:intron 45.0%
!! AGGAAGTACCAAGTAGTACC+TGG - chr7.1:2913329-2913348 None:intergenic 45.0%
!! TGTGGTTGACTTTGGGATCA+AGG + chr7.1:2915229-2915248 MS.gene050868:CDS 45.0%
ACAGCACGTGCATCTTCTCA+AGG + chr7.1:2913983-2914002 MS.gene050868:CDS 50.0%
ACCATGCTAATACTGCTGCC+TGG + chr7.1:2915162-2915181 MS.gene050868:CDS 50.0%
ACGTGAATGCGTGATACTGC+AGG + chr7.1:2914984-2915003 MS.gene050868:intron 50.0%
CAGCTACTCCCTCTGACTAA+AGG - chr7.1:2915105-2915124 None:intergenic 50.0%
CATCTCTGTTGAGGTCTGGA+TGG - chr7.1:2913257-2913276 None:intergenic 50.0%
CTGCATGCAATGTCCTACAC+TGG + chr7.1:2913770-2913789 MS.gene050868:intron 50.0%
GTCCAACAGCACACTGAACT+TGG - chr7.1:2914198-2914217 None:intergenic 50.0%
GTTCACTTCACCCCTCCTAT+GGG + chr7.1:2912875-2912894 MS.gene050868:CDS 50.0%
TAAGCAGAGGAAGTGGACAG+AGG - chr7.1:2913071-2913090 None:intergenic 50.0%
TCCAGGCAGCAGTATTAGCA+TGG - chr7.1:2915166-2915185 None:intergenic 50.0%
! AGATTTTGCAACGGATGGCG+GGG + chr7.1:2914904-2914923 MS.gene050868:intron 50.0%
! ATGAGGTGCTCTTTCCACAC+AGG - chr7.1:2913936-2913955 None:intergenic 50.0%
! GTGTCCTGCACCGATATATG+TGG - chr7.1:2913751-2913770 None:intergenic 50.0%
ATTTCGGCGGCTGAGCAGTT+AGG - chr7.1:2913113-2913132 None:intergenic 55.0%
GACGGTGTAAGCAGAGGAAG+TGG - chr7.1:2913078-2913097 None:intergenic 55.0%
GGTTCACTTCACCCCTCCTA+TGG + chr7.1:2912874-2912893 MS.gene050868:CDS 55.0%
TCCTCTGCTTACACCGTCCT+CGG + chr7.1:2913080-2913099 MS.gene050868:CDS 55.0%
TGCTGCCTGGAGTAACCCTA+AGG + chr7.1:2915175-2915194 MS.gene050868:CDS 55.0%
! CTGTGGTGGTGTGTGTGCTA+CGG + chr7.1:2915258-2915277 MS.gene050868:CDS 55.0%
!! AGCAGTTAGGTTGGACTCCG+AGG - chr7.1:2913100-2913119 None:intergenic 55.0%
!! GTTAGGTTGGACTCCGAGGA+CGG - chr7.1:2913096-2913115 None:intergenic 55.0%
TCCGAGGACGGTGTAAGCAG+AGG - chr7.1:2913084-2913103 None:intergenic 60.0%
CGGCGGCTGAGCAGTTAGGT+TGG - chr7.1:2913109-2913128 None:intergenic 65.0%
!! TGCAACGGATGGCGGGGAAG+TGG + chr7.1:2914910-2914929 MS.gene050868:intron 65.0%
!! ACGGATGGCGGGGAAGTGGC+AGG + chr7.1:2914914-2914933 MS.gene050868:intron 70.0%
!! CGGATGGCGGGGAAGTGGCA+GGG + chr7.1:2914915-2914934 MS.gene050868:intron 70.0%
!! GATGGCGGGGAAGTGGCAGG+GGG + chr7.1:2914917-2914936 MS.gene050868:intron 70.0%
!! GGATGGCGGGGAAGTGGCAG+GGG + chr7.1:2914916-2914935 MS.gene050868:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 2912872 2915349 2912872 ID=MS.gene050868
chr7.1 mRNA 2912872 2915349 2912872 ID=MS.gene050868.t1;Parent=MS.gene050868
chr7.1 exon 2912872 2912900 2912872 ID=MS.gene050868.t1.exon1;Parent=MS.gene050868.t1
chr7.1 CDS 2912872 2912900 2912872 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
chr7.1 exon 2913052 2913154 2913052 ID=MS.gene050868.t1.exon2;Parent=MS.gene050868.t1
chr7.1 CDS 2913052 2913154 2913052 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
chr7.1 exon 2913243 2913329 2913243 ID=MS.gene050868.t1.exon3;Parent=MS.gene050868.t1
chr7.1 CDS 2913243 2913329 2913243 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
chr7.1 exon 2913452 2913489 2913452 ID=MS.gene050868.t1.exon4;Parent=MS.gene050868.t1
chr7.1 CDS 2913452 2913489 2913452 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
chr7.1 exon 2913591 2913670 2913591 ID=MS.gene050868.t1.exon5;Parent=MS.gene050868.t1
chr7.1 CDS 2913591 2913670 2913591 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
chr7.1 exon 2913921 2914004 2913921 ID=MS.gene050868.t1.exon6;Parent=MS.gene050868.t1
chr7.1 CDS 2913921 2914004 2913921 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
chr7.1 exon 2914179 2914287 2914179 ID=MS.gene050868.t1.exon7;Parent=MS.gene050868.t1
chr7.1 CDS 2914179 2914287 2914179 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
chr7.1 exon 2914577 2914711 2914577 ID=MS.gene050868.t1.exon8;Parent=MS.gene050868.t1
chr7.1 CDS 2914577 2914711 2914577 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
chr7.1 exon 2914819 2914847 2914819 ID=MS.gene050868.t1.exon9;Parent=MS.gene050868.t1
chr7.1 CDS 2914819 2914847 2914819 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
chr7.1 exon 2915144 2915349 2915144 ID=MS.gene050868.t1.exon10;Parent=MS.gene050868.t1
chr7.1 CDS 2915144 2915349 2915144 ID=cds.MS.gene050868.t1;Parent=MS.gene050868.t1
Gene Sequence

>MS.gene050868

ATGGTTCACTTCACCCCTCCTATGGGAAAGTAAGTCGAAGTTGGACACAGTTGGTCTTACCATAATGGGATCGTTCAGGTTGTTTAGCTTCAACTTAACAACAACAACAACTTCTATGTTTGTAAACCGCACTTTTCCTTTGTCTGTGTCTTTAAAGAATAAAACAAGAACGAATTGCAGAGGCAGAGAAGATGGTCCTCTGTCCACTTCCTCTGCTTACACCGTCCTCGGAGTCCAACCTAACTGCTCAGCCGCCGAAATTAAAGCCGCTTTTCGATCCAAAGTATCAACATCAATCATTGAATATTTATTCACCATTTTCATTCTCTTCAATTCAATTCAAGTTTCTTTCTCTTTAATTTATTACTTAGGTAAAACAGTTCCATCCAGACCTCAACAGAGATGAAAATGAAACATATTCTGATGCTATGATTCGCCGTGTAATTCAAGCATACCAGGTACTACTTGGTACTTCCTTCTTAAACTCACTCATTCTTTTTCCTATTCACTACCACACATCATATACAGCATAGTAAAGTGTAATTAGTTCATTTTTAACCTTCATGCTTTTTTACTGCAGATACTATCCAACTACACACCATCACAAATTATTGAAACGTAAACTATATGTTCTTTATTCAACTCCGTATTGTTTTGAAATTTACGGTATGCATTCATTCTCTTACAGTTACAATGCCTGCTGACTTTTCACTTTTCAGGGAGTGCTTAGATCCCTTTGACAGACCAGAGTGTGAAGCTTTTGATCTTTTCGTTAATGAGTTTCTTTGTGTCGGCAAAGGTAGGAGTGTGAAGCATCAACACATACACAGACACCTTACATGACATGAAATTATGTAGAGCTCGTAACAATTTAGACCACATATATCGGTGCAGGACACTGCATGCAATGTCCTACACTGGACACACCTTTAATCTGCAAGTGTGGAGCATGCATACATACATATACAATGTCTCAACGTCACTTGGGATGAACAATTTTTATGCTTTTACTTTTCCATTTTACATTGATGAGTTTAAAATCTATGCAGCTTGTTCAAATTCCTGTGTGGAAAGAGCACCTCATGCTTTCACATTTGTCTCTTCAACTGGAACAGCACGTGCATCTTCTCAAGGTTAATTTGTTTTATATATTGTTCCCTTCCTTCATTTTGAGAAATTCATTAATTAAGAATGACATATTGAACTAGATAACTTCGCTTGTTTTAGAAGAGTGCATGTACTCTGCAAATGACATTCTTTTTAATGATTTATTTATGAATACTGCTATCTTCAACAACTGTTTATAGGTCATGGGGAAGACTACCAAGTTCAGTGTGCTGTTGGACAATGCCCGAGAAGTTGCATTCATTATGTAACCCCATCACAGAGAATTATTTTGGAGGAGCTACTTAACAGGTAACATTAACAGCGTTACTCATCCTACAATTTTTATTTTTTTACTTGGTGGGCTGTGGAACAGTTTATCAAATTAATCCCTTTGTCAATATATTATCTTTCTTATAAAACTAAAAGGATACAATACAACCATGCTTAATTTCCCTATTTATCTATTTCTATCATATACTAGCATGCTTTTTTACTTAATCATATAACATATTATTACCTTTTGGAATCATACAATGTTTTTAGAGTTTAACAAGTTCATTCCATTTGATTTCTTATTTCCTTTTTGTTGATGTTTCAGTATAATAGATGCACCCTATGATACATCAGCTGAGGCAGACTTGCTCTATTCACTTATAACCAAAGCTAAGTTTGAGAATAACCGATACCAAAAGCCAAAGAAGAAAACCAAATTTTCAACCCAGCATGTTGACTGGTTTTAGCGTTCCCATGTCTTCACTCCCCAAACTATAGATAGCACTGAGATTGCTGATGAGACAGTCATGGTTCTCAGCCAATAAATTTTTTATGAGCTGCTTATAGGTGCCTTACACCTCAGTATTCTGAAACATGTAAGCTACTTACTACAATCGGGCAATTTTTGTTTCATTTTGTACATCTTATTTTAAGATTTTGCAACGGATGGCGGGGAAGTGGCAGGGGGTTAGTTCTTTCAGTGAATGAATCAAGGGTCTAGATTCACTGTCTACGTGAATGCGTGATACTGCAGGTAATCCAAATCTCACTACATGACTTTTCCTTGTGGAAATGACGAAAAATTGCAAGTCTATATGATTTCTAATTTTTCCTGCCATGGCGTTTAAATCCTTTAGTCAGAGGGAGTAGCTGTGTTTGATAACACTTGCAGGTGGTGAATATATCATTGACCATGCTAATACTGCTGCCTGGAGTAACCCTAAGGAAGATTATGTCAAAGTCAATTGTGATGGTTCTGTGGTTGACTTTGGGATCAAGGCATATACTGTGGTGGTGTGTGTGCTACGGATGAATTTGGTGTTTGGTTTCTCTATGGCTCTTGACTCTTATTCCATCATTGTGGTTGTATTACGTTAA

Protein sequence

>MS.gene050868.t1

MVHFTPPMGKGREDGPLSTSSAYTVLGVQPNCSAAEIKAAFRSKVKQFHPDLNRDENETYSDAMIRRVIQAYQILSNYTPSQIIETECLDPFDRPECEAFDLFVNEFLCVGKACSNSCVERAPHAFTFVSSTGTARASSQGHGEDYQVQCAVGQCPRSCIHYVTPSQRIILEELLNSIIDAPYDTSAEADLLYSLITKAKFENNRYQKPKKKTKFSTQHVDWCLTPQYSETCGEYIIDHANTAAWSNPKEDYVKVNCDGSVVDFGIKAYTVVVCVLRMNLVFGFSMALDSYSIIVVVLR