Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69681.t1 | XP_013446003.1 | 93.7 | 506 | 32 | 0 | 1 | 506 | 1 | 506 | 2.60E-279 | 970.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69681.t1 | O80763 | 55.2 | 565 | 183 | 3 | 11 | 506 | 15 | 578 | 3.7e-181 | 636.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69681.t1 | A0A072U2K8 | 93.7 | 506 | 32 | 0 | 1 | 506 | 1 | 506 | 1.9e-279 | 970.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69681 | MS.gene59310 | PPI |
| MS.gene63007 | MS.gene69681 | PPI |
| MS.gene33593 | MS.gene69681 | PPI |
| MS.gene026627 | MS.gene69681 | PPI |
| MS.gene026628 | MS.gene69681 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69681.t1 | MTR_8g064840 | 93.676 | 506 | 32 | 0 | 1 | 506 | 1 | 506 | 0.0 | 969 |
| MS.gene69681.t1 | MTR_8g064810 | 85.124 | 484 | 72 | 0 | 1 | 484 | 1 | 484 | 0.0 | 849 |
| MS.gene69681.t1 | MTR_8g064810 | 37.092 | 337 | 209 | 3 | 166 | 501 | 6 | 340 | 7.86e-65 | 220 |
| MS.gene69681.t1 | MTR_3g114530 | 40.694 | 317 | 174 | 5 | 175 | 477 | 40 | 356 | 5.26e-77 | 248 |
| MS.gene69681.t1 | MTR_3g114530 | 40.506 | 316 | 173 | 4 | 15 | 315 | 40 | 355 | 5.71e-76 | 246 |
| MS.gene69681.t1 | MTR_3g109120 | 38.291 | 316 | 193 | 2 | 175 | 490 | 19 | 332 | 2.45e-75 | 243 |
| MS.gene69681.t1 | MTR_3g109120 | 33.962 | 318 | 206 | 4 | 9 | 324 | 13 | 328 | 2.13e-62 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69681.t1 | AT1G60420 | 62.526 | 475 | 177 | 1 | 9 | 483 | 13 | 486 | 0.0 | 632 |
| MS.gene69681.t1 | AT1G60420 | 38.922 | 334 | 201 | 3 | 170 | 502 | 14 | 345 | 2.10e-69 | 233 |
| MS.gene69681.t1 | AT1G60420 | 42.771 | 166 | 91 | 3 | 327 | 490 | 11 | 174 | 3.49e-36 | 142 |
| MS.gene69681.t1 | AT4G31240 | 38.871 | 319 | 193 | 2 | 172 | 490 | 17 | 333 | 1.48e-73 | 238 |
| MS.gene69681.t1 | AT4G31240 | 33.956 | 321 | 208 | 4 | 11 | 329 | 16 | 334 | 2.65e-63 | 211 |
| MS.gene69681.t1 | AT4G31240 | 38.871 | 319 | 193 | 2 | 172 | 490 | 17 | 333 | 1.48e-73 | 238 |
| MS.gene69681.t1 | AT4G31240 | 33.956 | 321 | 208 | 4 | 11 | 329 | 16 | 334 | 2.65e-63 | 211 |
Find 125 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATGAAACAATTCTTTA+AGG | 0.135448 | 8.3:+37125491 | None:intergenic |
| CTCCCCTCCTTTGTTGTTAT+TGG | 0.141349 | 8.3:-37124865 | MS.gene69681:CDS |
| CGAGATCTGGTTGGGCTCTA+TGG | 0.142538 | 8.3:-37124217 | MS.gene69681:CDS |
| TGTCTTGTGTCTTGATCTTA+TGG | 0.209832 | 8.3:+37124437 | None:intergenic |
| ATCACAAACCCATCCATCTT+TGG | 0.250320 | 8.3:+37124117 | None:intergenic |
| TCCCCTCCTTTGTTGTTATT+GGG | 0.261896 | 8.3:-37124864 | MS.gene69681:CDS |
| TGACTCTTCGTCATCATCTA+AGG | 0.272606 | 8.3:+37124981 | None:intergenic |
| GTTCACATTATCCGTGAATA+TGG | 0.278551 | 8.3:-37125409 | MS.gene69681:CDS |
| CTTGCATTGATTGATGAAAC+TGG | 0.298539 | 8.3:-37125454 | MS.gene69681:CDS |
| CTTGGAAAAGTAGTTGTTAA+AGG | 0.300775 | 8.3:+37125561 | None:intergenic |
| GATTCCGGTGTCGGAATTAA+AGG | 0.304659 | 8.3:-37124539 | MS.gene69681:CDS |
| AAACTTGTTTGAAACTAGTT+AGG | 0.330734 | 8.3:-37124906 | MS.gene69681:CDS |
| AAAGAATTGTTTCATGTAAA+CGG | 0.340648 | 8.3:-37125487 | MS.gene69681:CDS |
| AGTCGTAAATTCAAGGTATC+TGG | 0.347450 | 8.3:-37124295 | MS.gene69681:CDS |
| CCATGGCTGGCCCTTCCCTT+TGG | 0.353231 | 8.3:-37124340 | MS.gene69681:CDS |
| TCAAACACTTGAGTCAGTTT+TGG | 0.355313 | 8.3:-37124716 | MS.gene69681:CDS |
| TGGTATGCATCAATGAGTTT+TGG | 0.355397 | 8.3:+37124457 | None:intergenic |
| CTCTCCCAAGGGTGACTTTG+AGG | 0.370317 | 8.3:-37125617 | MS.gene69681:CDS |
| GCTATTTAATCAAAAGCTTA+AGG | 0.371039 | 8.3:-37125058 | MS.gene69681:CDS |
| AACATGCAGATTTCAGGCTT+TGG | 0.384409 | 8.3:+37124081 | None:intergenic |
| TTTGGGCTTCTCTCCTTCCT+TGG | 0.391386 | 8.3:+37124135 | None:intergenic |
| CCAGTCCTTGAGGTCGATAT+TGG | 0.399149 | 8.3:-37125314 | MS.gene69681:CDS |
| TCACAAACCCATCCATCTTT+GGG | 0.399851 | 8.3:+37124118 | None:intergenic |
| TCTTCGAAACACCGGCGATC+AGG | 0.402540 | 8.3:-37126681 | MS.gene69681:intron |
| CACGAAAGAGGCTCGAGATC+TGG | 0.405594 | 8.3:-37124230 | MS.gene69681:CDS |
| GAGATCTGGTTGGGCTCTAT+GGG | 0.414235 | 8.3:-37124216 | MS.gene69681:CDS |
| GGTCCGATCGCCACAAGCTT+GGG | 0.414337 | 8.3:+37124268 | None:intergenic |
| TCAATGGCATCAGCGGCATT+AGG | 0.420216 | 8.3:+37124820 | None:intergenic |
| GGGAAAGTTGTTACCGAAGA+TGG | 0.441178 | 8.3:-37125433 | MS.gene69681:CDS |
| TTTCCCTCAATCTCAGAGAT+AGG | 0.443663 | 8.3:+37125126 | None:intergenic |
| TTTGTTGTTATTGGGCCAGA+TGG | 0.449806 | 8.3:-37124856 | MS.gene69681:CDS |
| AAGAATTAGAAAGCGTGCCT+TGG | 0.451706 | 8.3:-37124951 | MS.gene69681:CDS |
| TCCTCTACTTCTCAGCCCAC+TGG | 0.456326 | 8.3:-37124504 | MS.gene69681:CDS |
| GATACCCTTTCACATTAGAA+AGG | 0.462202 | 8.3:-37125378 | MS.gene69681:CDS |
| TGGTCCGATCGCCACAAGCT+TGG | 0.462521 | 8.3:+37124267 | None:intergenic |
| GAGCCTCTTTCGTGACAGTC+AGG | 0.476275 | 8.3:+37124239 | None:intergenic |
| GATACCTATCTCTGAGATTG+AGG | 0.476914 | 8.3:-37125130 | MS.gene69681:CDS |
| ATTATCCGTGAATATGGAAC+TGG | 0.477075 | 8.3:-37125403 | MS.gene69681:CDS |
| GGAGAGAATAAAAGAAATAG+AGG | 0.489082 | 8.3:-37124170 | MS.gene69681:CDS |
| TGAACCCTTTCTAATGTGAA+AGG | 0.489248 | 8.3:+37125373 | None:intergenic |
| CTTTGCAGAAATGCCATGGC+TGG | 0.492417 | 8.3:-37124353 | MS.gene69681:CDS |
| AAGTGTTTGAGATGCGTCCT+TGG | 0.492831 | 8.3:+37124729 | None:intergenic |
| AAGAGGCTCGAGATCTGGTT+GGG | 0.493773 | 8.3:-37124225 | MS.gene69681:CDS |
| AGAATTAGAAAGCGTGCCTT+GGG | 0.493792 | 8.3:-37124950 | MS.gene69681:CDS |
| AACAACCTCAAAGTCACCCT+TGG | 0.495759 | 8.3:+37125612 | None:intergenic |
| ATTTCTAAGTCGTAAATTCA+AGG | 0.495892 | 8.3:-37124302 | MS.gene69681:CDS |
| CGAAGAAGAAAGTCTCTATC+GGG | 0.499270 | 8.3:+37126698 | None:intergenic |
| TTGGGTATCCTTGCCTCTCA+AGG | 0.499540 | 8.3:-37124932 | MS.gene69681:CDS |
| GAACCCTTTCTAATGTGAAA+GGG | 0.499789 | 8.3:+37125374 | None:intergenic |
| TGAACTTGATGAAATAGTAA+AGG | 0.501341 | 8.3:-37124752 | MS.gene69681:CDS |
| AGAGTTGAAAGATATAGAAG+AGG | 0.503305 | 8.3:-37125350 | MS.gene69681:CDS |
| GCTGATGCCATTGAGGATCA+TGG | 0.504159 | 8.3:-37124811 | MS.gene69681:CDS |
| GATAGCCAGCCATGGCATCT+TGG | 0.504355 | 8.3:+37125543 | None:intergenic |
| TTCGTGACAGTCAGGCCACT+TGG | 0.508645 | 8.3:+37124247 | None:intergenic |
| ATCCTCCAGTTCCATATTCA+CGG | 0.515188 | 8.3:+37125398 | None:intergenic |
| GATAATGTGAACTCCATCTT+CGG | 0.516592 | 8.3:+37125420 | None:intergenic |
| TCCATTGCAGATTCCGGTGT+CGG | 0.519940 | 8.3:-37124548 | MS.gene69681:intron |
| TCGAAGAAGAAAGTCTCTAT+CGG | 0.521912 | 8.3:+37126697 | None:intergenic |
| GAGATTGAGGGAAAGACAGT+TGG | 0.525484 | 8.3:-37125117 | MS.gene69681:CDS |
| ATTCCCAAGCTTGTGGCGAT+CGG | 0.529129 | 8.3:-37124271 | MS.gene69681:CDS |
| ACCAGTGGGCTGAGAAGTAG+AGG | 0.529711 | 8.3:+37124503 | None:intergenic |
| ATACCCTTTCACATTAGAAA+GGG | 0.530953 | 8.3:-37125377 | MS.gene69681:CDS |
| AGACAATGATGCACTTGAAG+TGG | 0.531603 | 8.3:-37124419 | MS.gene69681:CDS |
| TTCTCGAGTCACCAAAGGGA+AGG | 0.531872 | 8.3:+37124329 | None:intergenic |
| TTTATTCTCTCCTCAGTGAA+AGG | 0.534022 | 8.3:+37124181 | None:intergenic |
| ATACCTATCTCTGAGATTGA+GGG | 0.534296 | 8.3:-37125129 | MS.gene69681:CDS |
| GACTTTCTTCTTCGAAACAC+CGG | 0.534369 | 8.3:-37126689 | MS.gene69681:CDS |
| AGCTTGAAGGGAAAGAAACT+AGG | 0.537057 | 8.3:-37125715 | MS.gene69681:CDS |
| GAGAGAAGCCCAAAGATGGA+TGG | 0.538351 | 8.3:-37124126 | MS.gene69681:CDS |
| GTCTATCCCATGATCCTCAA+TGG | 0.543337 | 8.3:+37124804 | None:intergenic |
| CATTGAGAAAGATGGGAAGA+AGG | 0.544022 | 8.3:-37124671 | MS.gene69681:intron |
| TTGTTGTTATTGGGCCAGAT+GGG | 0.544610 | 8.3:-37124855 | MS.gene69681:CDS |
| GGAAAATGGGGAGAACTTTG+AGG | 0.545659 | 8.3:-37125016 | MS.gene69681:CDS |
| AAAGAGGCTCGAGATCTGGT+TGG | 0.548388 | 8.3:-37124226 | MS.gene69681:CDS |
| AGTGTCTCTGAATCAGAAAG+TGG | 0.548817 | 8.3:+37125520 | None:intergenic |
| GAAGGAGAGAAGCCCAAAGA+TGG | 0.550367 | 8.3:-37124130 | MS.gene69681:CDS |
| CTGATGCCATTGAGGATCAT+GGG | 0.553965 | 8.3:-37124810 | MS.gene69681:CDS |
| TCTCGAGTCACCAAAGGGAA+GGG | 0.558116 | 8.3:+37124330 | None:intergenic |
| TGGCCTGACTGTCACGAAAG+AGG | 0.559786 | 8.3:-37124242 | MS.gene69681:CDS |
| GGCCCAATAACAACAAAGGA+GGG | 0.560017 | 8.3:+37124862 | None:intergenic |
| ACAACCTCAAAGTCACCCTT+GGG | 0.560092 | 8.3:+37125613 | None:intergenic |
| TTCTGCAAAGAATTCATCAA+AGG | 0.560320 | 8.3:+37124366 | None:intergenic |
| ATATAGAAGAGGAAGCTAAG+AGG | 0.564358 | 8.3:-37125339 | MS.gene69681:CDS |
| ATCATTCACTCCAACGTTGG+TGG | 0.565663 | 8.3:-37125656 | MS.gene69681:CDS |
| CCGATCATTCACTCCAACGT+TGG | 0.572955 | 8.3:-37125659 | MS.gene69681:CDS |
| TAATGCCGCTGATGCCATTG+AGG | 0.573168 | 8.3:-37124818 | MS.gene69681:CDS |
| GACTCTTCGTCATCATCTAA+GGG | 0.575321 | 8.3:+37124982 | None:intergenic |
| TTCTCCTTTAATTCCGACAC+CGG | 0.575739 | 8.3:+37124535 | None:intergenic |
| ATTCACTCCAACGTTGGTGG+AGG | 0.578411 | 8.3:-37125653 | MS.gene69681:CDS |
| GTACAATGAACTCTCTCCCA+AGG | 0.579038 | 8.3:-37125629 | MS.gene69681:CDS |
| AGAGAAGCCCAAAGATGGAT+GGG | 0.583984 | 8.3:-37124125 | MS.gene69681:CDS |
| CCAAAGGGAAGGGCCAGCCA+TGG | 0.589759 | 8.3:+37124340 | None:intergenic |
| ATCTGGCATTCCCAAGCTTG+TGG | 0.593565 | 8.3:-37124278 | MS.gene69681:CDS |
| TTTGGAAGAAACTCACGGCA+TGG | 0.593881 | 8.3:+37124475 | None:intergenic |
| ATGATCCTCAATGGCATCAG+CGG | 0.595653 | 8.3:+37124813 | None:intergenic |
| AGATGATATCACAAAGTCAC+GGG | 0.597322 | 8.3:+37125282 | None:intergenic |
| CCAACGTTGGAGTGAATGAT+CGG | 0.598716 | 8.3:+37125659 | None:intergenic |
| ATCCGTGAATATGGAACTGG+AGG | 0.602853 | 8.3:-37125400 | MS.gene69681:CDS |
| ATTTAATCAAAAGCTTAAGG+AGG | 0.604615 | 8.3:-37125055 | MS.gene69681:CDS |
| CCAATATCGACCTCAAGGAC+TGG | 0.605070 | 8.3:+37125314 | None:intergenic |
| AAAGATGGATGGGTTTGTGA+TGG | 0.605439 | 8.3:-37124115 | MS.gene69681:CDS |
| TGATGAAATAGTAAAGGCCA+AGG | 0.608101 | 8.3:-37124746 | MS.gene69681:CDS |
| TCATCAATCAATGCAAGATG+AGG | 0.612326 | 8.3:+37125460 | None:intergenic |
| TTGCATTGATTGATGAAACT+GGG | 0.612878 | 8.3:-37125453 | MS.gene69681:CDS |
| CACGGCATGGAGGACACCAG+TGG | 0.616281 | 8.3:+37124488 | None:intergenic |
| CAGATGATATCACAAAGTCA+CGG | 0.616914 | 8.3:+37125281 | None:intergenic |
| AGTCTCTATCGGGAGAAGAG+AGG | 0.619260 | 8.3:+37126708 | None:intergenic |
| TGGCCCAATAACAACAAAGG+AGG | 0.620653 | 8.3:+37124861 | None:intergenic |
| ATCTGGCCCAATAACAACAA+AGG | 0.621741 | 8.3:+37124858 | None:intergenic |
| AGAGACCAATATCGACCTCA+AGG | 0.623766 | 8.3:+37125309 | None:intergenic |
| GCCCAATAACAACAAAGGAG+GGG | 0.624936 | 8.3:+37124863 | None:intergenic |
| TACAATGAACTCTCTCCCAA+GGG | 0.628684 | 8.3:-37125628 | MS.gene69681:CDS |
| ACGGCATGGAGGACACCAGT+GGG | 0.635887 | 8.3:+37124489 | None:intergenic |
| AATTCTTTGCAGAAATGCCA+TGG | 0.640896 | 8.3:-37124357 | MS.gene69681:CDS |
| GTGTCTCTGAATCAGAAAGT+GGG | 0.644415 | 8.3:+37125521 | None:intergenic |
| AGTGGGCTGAGAAGTAGAGG+AGG | 0.655615 | 8.3:+37124506 | None:intergenic |
| TTGAGAGGCAAGGATACCCA+AGG | 0.662807 | 8.3:+37124934 | None:intergenic |
| GAAAGTGGGATAGCCAGCCA+TGG | 0.663948 | 8.3:+37125535 | None:intergenic |
| CTTGTGGCGATCGGACCAAG+TGG | 0.664406 | 8.3:-37124262 | MS.gene69681:CDS |
| TTGTACACCTCCACCAACGT+TGG | 0.673259 | 8.3:+37125646 | None:intergenic |
| CTAAGAGGAACCAGTCCTTG+AGG | 0.674916 | 8.3:-37125324 | MS.gene69681:CDS |
| AGATCTGGTTGGGCTCTATG+GGG | 0.677010 | 8.3:-37124215 | MS.gene69681:CDS |
| GTTGGAGTGAATGATCGGCA+CGG | 0.721516 | 8.3:+37125664 | None:intergenic |
| GGAAGAAACTCACGGCATGG+AGG | 0.726391 | 8.3:+37124478 | None:intergenic |
| AGATGCTTATCCTTTCACTG+AGG | 0.785205 | 8.3:-37124191 | MS.gene69681:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATAAATATAGATGTAT+TGG | - | chr8.3:37126209-37126228 | MS.gene69681:intron | 10.0% |
| !! | AAATTAAAATCTATGAAACA+CGG | + | chr8.3:37124480-37124499 | None:intergenic | 15.0% |
| !! | TTAATAACGAATTAAAAAGA+GGG | + | chr8.3:37126261-37126280 | None:intergenic | 15.0% |
| !! | AAAGAATTGTTTCATGTAAA+CGG | - | chr8.3:37125358-37125377 | MS.gene69681:CDS | 20.0% |
| !! | AACAAACAGATAATAACAAA+AGG | + | chr8.3:37125639-37125658 | None:intergenic | 20.0% |
| !! | ATTAGTGTAATTATATGTGT+CGG | + | chr8.3:37124394-37124413 | None:intergenic | 20.0% |
| !! | ATTTCTTCCACATAAAATAA+AGG | + | chr8.3:37124254-37124273 | None:intergenic | 20.0% |
| !! | GTTAATAACGAATTAAAAAG+AGG | + | chr8.3:37126262-37126281 | None:intergenic | 20.0% |
| !! | TTACATGAAACAATTCTTTA+AGG | + | chr8.3:37125357-37125376 | None:intergenic | 20.0% |
| !! | TTTCTTCCACATAAAATAAA+GGG | + | chr8.3:37124253-37124272 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTATTGTATATTG+TGG | - | chr8.3:37124645-37124664 | MS.gene69681:intron | 20.0% |
| !!! | TTAATTATGTGATTTTCTCA+CGG | - | chr8.3:37124419-37124438 | MS.gene69681:CDS | 20.0% |
| !!! | TTTAATCCCTTTATTTTATG+TGG | - | chr8.3:37124244-37124263 | MS.gene69681:CDS | 20.0% |
| ! | ATTTAATCAAAAGCTTAAGG+AGG | - | chr8.3:37125790-37125809 | MS.gene69681:intron | 25.0% |
| ! | ATTTCTAAGTCGTAAATTCA+AGG | - | chr8.3:37126543-37126562 | MS.gene69681:intron | 25.0% |
| ! | CTTATGATAATTGTTTGAAG+TGG | - | chr8.3:37125038-37125057 | MS.gene69681:CDS | 25.0% |
| ! | GCTATTTAATCAAAAGCTTA+AGG | - | chr8.3:37125787-37125806 | MS.gene69681:intron | 25.0% |
| ! | TGAACTTGATGAAATAGTAA+AGG | - | chr8.3:37126093-37126112 | MS.gene69681:intron | 25.0% |
| ! | TTAACTCAGTATGATATAGT+AGG | - | chr8.3:37125611-37125630 | MS.gene69681:CDS | 25.0% |
| ! | TTAATACCGATGAAATATTG+TGG | - | chr8.3:37125066-37125085 | MS.gene69681:CDS | 25.0% |
| !! | AAACTTGTTTGAAACTAGTT+AGG | - | chr8.3:37125939-37125958 | MS.gene69681:intron | 25.0% |
| !! | ATTTTGTCATTGAGAAAGAT+GGG | - | chr8.3:37126167-37126186 | MS.gene69681:intron | 25.0% |
| !! | GTAAAAATTGATAGCTTGAA+GGG | - | chr8.3:37125118-37125137 | MS.gene69681:CDS | 25.0% |
| !!! | GTTTTTATTTTTCAGCATCA+TGG | - | chr8.3:37125152-37125171 | MS.gene69681:intron | 25.0% |
| AATTAAAAAGAGGGAGTGAT+GGG | + | chr8.3:37126252-37126271 | None:intergenic | 30.0% | |
| ACAAAAACCTGAAGGAAAAT+GGG | - | chr8.3:37125816-37125835 | MS.gene69681:intron | 30.0% | |
| AGAGTTGAAAGATATAGAAG+AGG | - | chr8.3:37125495-37125514 | MS.gene69681:CDS | 30.0% | |
| ATACCCTTTCACATTAGAAA+GGG | - | chr8.3:37125468-37125487 | MS.gene69681:CDS | 30.0% | |
| ATAGCACCACAATATTTCAT+CGG | + | chr8.3:37125075-37125094 | None:intergenic | 30.0% | |
| CTTGGAAAAGTAGTTGTTAA+AGG | + | chr8.3:37125287-37125306 | None:intergenic | 30.0% | |
| GGAGAGAATAAAAGAAATAG+AGG | - | chr8.3:37126675-37126694 | MS.gene69681:intron | 30.0% | |
| TAAATGAACCACATAATCTG+TGG | + | chr8.3:37125664-37125683 | None:intergenic | 30.0% | |
| TACAAAAACCTGAAGGAAAA+TGG | - | chr8.3:37125815-37125834 | MS.gene69681:intron | 30.0% | |
| TTCTGCAAAGAATTCATCAA+AGG | + | chr8.3:37126482-37126501 | None:intergenic | 30.0% | |
| ! | GATTTTGTCATTGAGAAAGA+TGG | - | chr8.3:37126166-37126185 | MS.gene69681:intron | 30.0% |
| ! | GGTAAAAATTGATAGCTTGA+AGG | - | chr8.3:37125117-37125136 | MS.gene69681:CDS | 30.0% |
| ! | GTTTTACTTGAGTTTTCTTG+TGG | - | chr8.3:37124617-37124636 | MS.gene69681:intron | 30.0% |
| ! | TCAAGTTCACAAAACTTTTC+AGG | + | chr8.3:37126082-37126101 | None:intergenic | 30.0% |
| !! | TTGCATTGATTGATGAAACT+GGG | - | chr8.3:37125392-37125411 | MS.gene69681:CDS | 30.0% |
| !! | TTTTGATTAAATAGCACGCA+TGG | + | chr8.3:37125782-37125801 | None:intergenic | 30.0% |
| !!! | TCTCATATTTTGAAACTCAC+AGG | - | chr8.3:37125096-37125115 | MS.gene69681:CDS | 30.0% |
| AATTCTTTGCAGAAATGCCA+TGG | - | chr8.3:37126488-37126507 | MS.gene69681:intron | 35.0% | |
| ACATCAAGGAAAAGTCAGAT+TGG | + | chr8.3:37125687-37125706 | None:intergenic | 35.0% | |
| AGATGATATCACAAAGTCAC+GGG | + | chr8.3:37125566-37125585 | None:intergenic | 35.0% | |
| ATATAGAAGAGGAAGCTAAG+AGG | - | chr8.3:37125506-37125525 | MS.gene69681:CDS | 35.0% | |
| ATTAAAAAGAGGGAGTGATG+GGG | + | chr8.3:37126251-37126270 | None:intergenic | 35.0% | |
| ATTATCCGTGAATATGGAAC+TGG | - | chr8.3:37125442-37125461 | MS.gene69681:CDS | 35.0% | |
| CAAAAACCTGAAGGAAAATG+GGG | - | chr8.3:37125817-37125836 | MS.gene69681:intron | 35.0% | |
| CAGATGATATCACAAAGTCA+CGG | + | chr8.3:37125567-37125586 | None:intergenic | 35.0% | |
| GAACCCTTTCTAATGTGAAA+GGG | + | chr8.3:37125474-37125493 | None:intergenic | 35.0% | |
| GAATTAAAAAGAGGGAGTGA+TGG | + | chr8.3:37126253-37126272 | None:intergenic | 35.0% | |
| GATAATGTGAACTCCATCTT+CGG | + | chr8.3:37125428-37125447 | None:intergenic | 35.0% | |
| GATACCCTTTCACATTAGAA+AGG | - | chr8.3:37125467-37125486 | MS.gene69681:CDS | 35.0% | |
| GTTCACATTATCCGTGAATA+TGG | - | chr8.3:37125436-37125455 | MS.gene69681:CDS | 35.0% | |
| TCATCAATCAATGCAAGATG+AGG | + | chr8.3:37125388-37125407 | None:intergenic | 35.0% | |
| TCGAAGAAGAAAGTCTCTAT+CGG | + | chr8.3:37124151-37124170 | None:intergenic | 35.0% | |
| TGAACCCTTTCTAATGTGAA+AGG | + | chr8.3:37125475-37125494 | None:intergenic | 35.0% | |
| TGATGAAATAGTAAAGGCCA+AGG | - | chr8.3:37126099-37126118 | MS.gene69681:intron | 35.0% | |
| TGTCGAACATACTTAAACTG+AGG | + | chr8.3:37124307-37124326 | None:intergenic | 35.0% | |
| TGTCTTGTGTCTTGATCTTA+TGG | + | chr8.3:37126411-37126430 | None:intergenic | 35.0% | |
| TTTATCTCCATTGCAGATTC+CGG | - | chr8.3:37126291-37126310 | MS.gene69681:intron | 35.0% | |
| TTTATTCTCTCCTCAGTGAA+AGG | + | chr8.3:37126667-37126686 | None:intergenic | 35.0% | |
| TTTGTTTGCCACAGATTATG+TGG | - | chr8.3:37125653-37125672 | MS.gene69681:CDS | 35.0% | |
| ! | AGTCGTAAATTCAAGGTATC+TGG | - | chr8.3:37126550-37126569 | MS.gene69681:intron | 35.0% |
| ! | ATGTGATTTTCTCACGGTAT+TGG | - | chr8.3:37124425-37124444 | MS.gene69681:CDS | 35.0% |
| ! | GTAATTATATGTGTCGGTGT+CGG | + | chr8.3:37124388-37124407 | None:intergenic | 35.0% |
| ! | TCAAACACTTGAGTCAGTTT+TGG | - | chr8.3:37126129-37126148 | MS.gene69681:intron | 35.0% |
| ! | TGGTATGCATCAATGAGTTT+TGG | + | chr8.3:37126391-37126410 | None:intergenic | 35.0% |
| !! | AAACAAGTTTTGTCCTTGAG+AGG | + | chr8.3:37125929-37125948 | None:intergenic | 35.0% |
| !! | ATACCTATCTCTGAGATTGA+GGG | - | chr8.3:37125716-37125735 | MS.gene69681:CDS | 35.0% |
| !! | CAAAACTTTTCAGGAGTGAA+TGG | + | chr8.3:37126073-37126092 | None:intergenic | 35.0% |
| !! | CTTGCATTGATTGATGAAAC+TGG | - | chr8.3:37125391-37125410 | MS.gene69681:CDS | 35.0% |
| !! | TATTTTTCAGCATCATGGTG+TGG | - | chr8.3:37125157-37125176 | MS.gene69681:intron | 35.0% |
| !!! | TGAGTTTTGGAAGAAACTCA+CGG | + | chr8.3:37126378-37126397 | None:intergenic | 35.0% |
| AGACAATGATGCACTTGAAG+TGG | - | chr8.3:37126426-37126445 | MS.gene69681:intron | 40.0% | |
| AGATGCTTATCCTTTCACTG+AGG | - | chr8.3:37126654-37126673 | MS.gene69681:intron | 40.0% | |
| AGCTTGAAGGGAAAGAAACT+AGG | - | chr8.3:37125130-37125149 | MS.gene69681:CDS | 40.0% | |
| AGTGTCTCTGAATCAGAAAG+TGG | + | chr8.3:37125328-37125347 | None:intergenic | 40.0% | |
| ATCACAAACCCATCCATCTT+TGG | + | chr8.3:37126731-37126750 | None:intergenic | 40.0% | |
| ATCCTCCAGTTCCATATTCA+CGG | + | chr8.3:37125450-37125469 | None:intergenic | 40.0% | |
| ATCTGGCCCAATAACAACAA+AGG | + | chr8.3:37125990-37126009 | None:intergenic | 40.0% | |
| CATTGAGAAAGATGGGAAGA+AGG | - | chr8.3:37126174-37126193 | MS.gene69681:intron | 40.0% | |
| CGAAGAAGAAAGTCTCTATC+GGG | + | chr8.3:37124150-37124169 | None:intergenic | 40.0% | |
| GACTCTTCGTCATCATCTAA+GGG | + | chr8.3:37125866-37125885 | None:intergenic | 40.0% | |
| GACTTTCTTCTTCGAAACAC+CGG | - | chr8.3:37124156-37124175 | MS.gene69681:CDS | 40.0% | |
| GGAGGTTTACAAAAACCTGA+AGG | - | chr8.3:37125808-37125827 | MS.gene69681:intron | 40.0% | |
| GTGTCTCTGAATCAGAAAGT+GGG | + | chr8.3:37125327-37125346 | None:intergenic | 40.0% | |
| TACAATGAACTCTCTCCCAA+GGG | - | chr8.3:37125217-37125236 | MS.gene69681:intron | 40.0% | |
| TCACAAACCCATCCATCTTT+GGG | + | chr8.3:37126730-37126749 | None:intergenic | 40.0% | |
| TGACTCTTCGTCATCATCTA+AGG | + | chr8.3:37125867-37125886 | None:intergenic | 40.0% | |
| TTCTCCTTTAATTCCGACAC+CGG | + | chr8.3:37126313-37126332 | None:intergenic | 40.0% | |
| TTTCCCTCAATCTCAGAGAT+AGG | + | chr8.3:37125722-37125741 | None:intergenic | 40.0% | |
| ! | AAAGATGGATGGGTTTGTGA+TGG | - | chr8.3:37126730-37126749 | MS.gene69681:CDS | 40.0% |
| ! | AAGAATTAGAAAGCGTGCCT+TGG | - | chr8.3:37125894-37125913 | MS.gene69681:intron | 40.0% |
| ! | AGAATTAGAAAGCGTGCCTT+GGG | - | chr8.3:37125895-37125914 | MS.gene69681:intron | 40.0% |
| ! | GGTTTTCATCTCTAGTGACA+GGG | - | chr8.3:37126447-37126466 | MS.gene69681:intron | 40.0% |
| ! | TAAACGTTTTACCTGATCGC+CGG | + | chr8.3:37124178-37124197 | None:intergenic | 40.0% |
| ! | TCTTTTCTCGAGTCACCAAA+GGG | + | chr8.3:37126523-37126542 | None:intergenic | 40.0% |
| ! | TGGTTTTCATCTCTAGTGAC+AGG | - | chr8.3:37126446-37126465 | MS.gene69681:intron | 40.0% |
| ! | TTCTTTTCTCGAGTCACCAA+AGG | + | chr8.3:37126524-37126543 | None:intergenic | 40.0% |
| ! | TTGTTGTTATTGGGCCAGAT+GGG | - | chr8.3:37125990-37126009 | MS.gene69681:intron | 40.0% |
| !! | ACTACTTTTCCAAGATGCCA+TGG | - | chr8.3:37125293-37125312 | MS.gene69681:CDS | 40.0% |
| !! | GATACCTATCTCTGAGATTG+AGG | - | chr8.3:37125715-37125734 | MS.gene69681:CDS | 40.0% |
| !! | TCCCCTCCTTTGTTGTTATT+GGG | - | chr8.3:37125981-37126000 | MS.gene69681:intron | 40.0% |
| !! | TTTGTTGTTATTGGGCCAGA+TGG | - | chr8.3:37125989-37126008 | MS.gene69681:intron | 40.0% |
| AACAACCTCAAAGTCACCCT+TGG | + | chr8.3:37125236-37125255 | None:intergenic | 45.0% | |
| ACAACCTCAAAGTCACCCTT+GGG | + | chr8.3:37125235-37125254 | None:intergenic | 45.0% | |
| AGAGAAGCCCAAAGATGGAT+GGG | - | chr8.3:37126720-37126739 | MS.gene69681:CDS | 45.0% | |
| AGAGACCAATATCGACCTCA+AGG | + | chr8.3:37125539-37125558 | None:intergenic | 45.0% | |
| ATCATTCACTCCAACGTTGG+TGG | - | chr8.3:37125189-37125208 | MS.gene69681:intron | 45.0% | |
| ATCCGTGAATATGGAACTGG+AGG | - | chr8.3:37125445-37125464 | MS.gene69681:CDS | 45.0% | |
| ATGATCCTCAATGGCATCAG+CGG | + | chr8.3:37126035-37126054 | None:intergenic | 45.0% | |
| CCAACGTTGGAGTGAATGAT+CGG | + | chr8.3:37125189-37125208 | None:intergenic | 45.0% | |
| CTGATGCCATTGAGGATCAT+GGG | - | chr8.3:37126035-37126054 | MS.gene69681:intron | 45.0% | |
| GAGATTGAGGGAAAGACAGT+TGG | - | chr8.3:37125728-37125747 | MS.gene69681:CDS | 45.0% | |
| GCCCAATAACAACAAAGGAG+GGG | + | chr8.3:37125985-37126004 | None:intergenic | 45.0% | |
| GGAAAATGGGGAGAACTTTG+AGG | - | chr8.3:37125829-37125848 | MS.gene69681:intron | 45.0% | |
| GGCCCAATAACAACAAAGGA+GGG | + | chr8.3:37125986-37126005 | None:intergenic | 45.0% | |
| GGGAAAGTTGTTACCGAAGA+TGG | - | chr8.3:37125412-37125431 | MS.gene69681:CDS | 45.0% | |
| GGTATCTGTTGTGCACATCA+AGG | + | chr8.3:37125701-37125720 | None:intergenic | 45.0% | |
| GTACAATGAACTCTCTCCCA+AGG | - | chr8.3:37125216-37125235 | MS.gene69681:intron | 45.0% | |
| GTCTATCCCATGATCCTCAA+TGG | + | chr8.3:37126044-37126063 | None:intergenic | 45.0% | |
| TGGCCCAATAACAACAAAGG+AGG | + | chr8.3:37125987-37126006 | None:intergenic | 45.0% | |
| TTTGGAAGAAACTCACGGCA+TGG | + | chr8.3:37126373-37126392 | None:intergenic | 45.0% | |
| ! | AAGTGTTTGAGATGCGTCCT+TGG | + | chr8.3:37126119-37126138 | None:intergenic | 45.0% |
| ! | AGTTCTCCCCATTTTCCTTC+AGG | + | chr8.3:37125826-37125845 | None:intergenic | 45.0% |
| ! | GATTCCGGTGTCGGAATTAA+AGG | - | chr8.3:37126306-37126325 | MS.gene69681:intron | 45.0% |
| ! | GGATGAAGAGTTTTCCCATC+TGG | + | chr8.3:37126007-37126026 | None:intergenic | 45.0% |
| !! | AGTTTTGTCCTTGAGAGGCA+AGG | + | chr8.3:37125924-37125943 | None:intergenic | 45.0% |
| !! | CTCCCCTCCTTTGTTGTTAT+TGG | - | chr8.3:37125980-37125999 | MS.gene69681:intron | 45.0% |
| !!! | CTTGAGTCAGTTTTGGTGTC+TGG | - | chr8.3:37126136-37126155 | MS.gene69681:intron | 45.0% |
| AAAGAGGCTCGAGATCTGGT+TGG | - | chr8.3:37126619-37126638 | MS.gene69681:intron | 50.0% | |
| AAGAGGCTCGAGATCTGGTT+GGG | - | chr8.3:37126620-37126639 | MS.gene69681:intron | 50.0% | |
| AGATCTGGTTGGGCTCTATG+GGG | - | chr8.3:37126630-37126649 | MS.gene69681:intron | 50.0% | |
| AGTCTCTATCGGGAGAAGAG+AGG | + | chr8.3:37124140-37124159 | None:intergenic | 50.0% | |
| ATCTGGCATTCCCAAGCTTG+TGG | - | chr8.3:37126567-37126586 | MS.gene69681:intron | 50.0% | |
| ATTCCCAAGCTTGTGGCGAT+CGG | - | chr8.3:37126574-37126593 | MS.gene69681:intron | 50.0% | |
| CCAATATCGACCTCAAGGAC+TGG | + | chr8.3:37125534-37125553 | None:intergenic | 50.0% | |
| CCAGTCCTTGAGGTCGATAT+TGG | - | chr8.3:37125531-37125550 | MS.gene69681:CDS | 50.0% | |
| CCGATCATTCACTCCAACGT+TGG | - | chr8.3:37125186-37125205 | MS.gene69681:intron | 50.0% | |
| CTAAGAGGAACCAGTCCTTG+AGG | - | chr8.3:37125521-37125540 | MS.gene69681:CDS | 50.0% | |
| CTTTGCAGAAATGCCATGGC+TGG | - | chr8.3:37126492-37126511 | MS.gene69681:intron | 50.0% | |
| GAAGGAGAGAAGCCCAAAGA+TGG | - | chr8.3:37126715-37126734 | MS.gene69681:CDS | 50.0% | |
| GAGAGAAGCCCAAAGATGGA+TGG | - | chr8.3:37126719-37126738 | MS.gene69681:CDS | 50.0% | |
| GAGATCTGGTTGGGCTCTAT+GGG | - | chr8.3:37126629-37126648 | MS.gene69681:intron | 50.0% | |
| GCACAAAAAGCTGCCAAGGA+AGG | - | chr8.3:37126697-37126716 | MS.gene69681:CDS | 50.0% | |
| GCTGATGCCATTGAGGATCA+TGG | - | chr8.3:37126034-37126053 | MS.gene69681:intron | 50.0% | |
| GTTGGAGTGAATGATCGGCA+CGG | + | chr8.3:37125184-37125203 | None:intergenic | 50.0% | |
| TAATGCCGCTGATGCCATTG+AGG | - | chr8.3:37126027-37126046 | MS.gene69681:intron | 50.0% | |
| TCAATGGCATCAGCGGCATT+AGG | + | chr8.3:37126028-37126047 | None:intergenic | 50.0% | |
| TCCATTGCAGATTCCGGTGT+CGG | - | chr8.3:37126297-37126316 | MS.gene69681:intron | 50.0% | |
| TCTCGAGTCACCAAAGGGAA+GGG | + | chr8.3:37126518-37126537 | None:intergenic | 50.0% | |
| TTCTCGAGTCACCAAAGGGA+AGG | + | chr8.3:37126519-37126538 | None:intergenic | 50.0% | |
| TTGAGAGGCAAGGATACCCA+AGG | + | chr8.3:37125914-37125933 | None:intergenic | 50.0% | |
| TTGGGTATCCTTGCCTCTCA+AGG | - | chr8.3:37125913-37125932 | MS.gene69681:intron | 50.0% | |
| TTGTACACCTCCACCAACGT+TGG | + | chr8.3:37125202-37125221 | None:intergenic | 50.0% | |
| TTTGGGCTTCTCTCCTTCCT+TGG | + | chr8.3:37126713-37126732 | None:intergenic | 50.0% | |
| ! | AGAGGCACAAAAAGCTGCCA+AGG | - | chr8.3:37126693-37126712 | MS.gene69681:CDS | 50.0% |
| ! | ATTCACTCCAACGTTGGTGG+AGG | - | chr8.3:37125192-37125211 | MS.gene69681:intron | 50.0% |
| ! | CTTTTCCAAGATGCCATGGC+TGG | - | chr8.3:37125297-37125316 | MS.gene69681:CDS | 50.0% |
| CACGAAAGAGGCTCGAGATC+TGG | - | chr8.3:37126615-37126634 | MS.gene69681:intron | 55.0% | |
| CGAGATCTGGTTGGGCTCTA+TGG | - | chr8.3:37126628-37126647 | MS.gene69681:intron | 55.0% | |
| CTCTCCCAAGGGTGACTTTG+AGG | - | chr8.3:37125228-37125247 | MS.gene69681:intron | 55.0% | |
| GAAAGTGGGATAGCCAGCCA+TGG | + | chr8.3:37125313-37125332 | None:intergenic | 55.0% | |
| GAGCCTCTTTCGTGACAGTC+AGG | + | chr8.3:37126609-37126628 | None:intergenic | 55.0% | |
| GATAGCCAGCCATGGCATCT+TGG | + | chr8.3:37125305-37125324 | None:intergenic | 55.0% | |
| GGAAGAAACTCACGGCATGG+AGG | + | chr8.3:37126370-37126389 | None:intergenic | 55.0% | |
| TCCGACACCGGAATCTGCAA+TGG | + | chr8.3:37126301-37126320 | None:intergenic | 55.0% | |
| TCCTCTACTTCTCAGCCCAC+TGG | - | chr8.3:37126341-37126360 | MS.gene69681:intron | 55.0% | |
| TCTTCGAAACACCGGCGATC+AGG | - | chr8.3:37124164-37124183 | MS.gene69681:CDS | 55.0% | |
| TGGCCTGACTGTCACGAAAG+AGG | - | chr8.3:37126603-37126622 | MS.gene69681:intron | 55.0% | |
| TGTCATGTCCGTGTCGTGTC+TGG | - | chr8.3:37124347-37124366 | MS.gene69681:CDS | 55.0% | |
| TTCGTGACAGTCAGGCCACT+TGG | + | chr8.3:37126601-37126620 | None:intergenic | 55.0% | |
| !! | ACCAGTGGGCTGAGAAGTAG+AGG | + | chr8.3:37126345-37126364 | None:intergenic | 55.0% |
| !! | AGTGGGCTGAGAAGTAGAGG+AGG | + | chr8.3:37126342-37126361 | None:intergenic | 55.0% |
| !! | GTCGGTGTCGGATACGTACA+CGG | + | chr8.3:37124376-37124395 | None:intergenic | 55.0% |
| ACGGCATGGAGGACACCAGT+GGG | + | chr8.3:37126359-37126378 | None:intergenic | 60.0% | |
| CACGGACACCAGACACGACA+CGG | + | chr8.3:37124358-37124377 | None:intergenic | 60.0% | |
| CACGGACACCAGATACGACG+CGG | + | chr8.3:37124462-37124481 | None:intergenic | 60.0% | |
| CTTGTGGCGATCGGACCAAG+TGG | - | chr8.3:37126583-37126602 | MS.gene69681:intron | 60.0% | |
| GGTCCGATCGCCACAAGCTT+GGG | + | chr8.3:37126580-37126599 | None:intergenic | 60.0% | |
| GTCAGTGTCCGCGTCGTATC+TGG | - | chr8.3:37124451-37124470 | MS.gene69681:CDS | 60.0% | |
| TGGTCCGATCGCCACAAGCT+TGG | + | chr8.3:37126581-37126600 | None:intergenic | 60.0% | |
| CACGGCATGGAGGACACCAG+TGG | + | chr8.3:37126360-37126379 | None:intergenic | 65.0% | |
| CCAAAGGGAAGGGCCAGCCA+TGG | + | chr8.3:37126508-37126527 | None:intergenic | 65.0% | |
| ! | CCATGGCTGGCCCTTCCCTT+TGG | - | chr8.3:37126505-37126524 | MS.gene69681:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 37124093 | 37126774 | 37124093 | ID=MS.gene69681 |
| chr8.3 | mRNA | 37124093 | 37126774 | 37124093 | ID=MS.gene69681.t1;Parent=MS.gene69681 |
| chr8.3 | exon | 37126682 | 37126774 | 37126682 | ID=MS.gene69681.t1.exon1;Parent=MS.gene69681.t1 |
| chr8.3 | CDS | 37126682 | 37126774 | 37126682 | ID=cds.MS.gene69681.t1;Parent=MS.gene69681.t1 |
| chr8.3 | exon | 37125270 | 37125749 | 37125270 | ID=MS.gene69681.t1.exon2;Parent=MS.gene69681.t1 |
| chr8.3 | CDS | 37125270 | 37125749 | 37125270 | ID=cds.MS.gene69681.t1;Parent=MS.gene69681.t1 |
| chr8.3 | exon | 37124672 | 37125151 | 37124672 | ID=MS.gene69681.t1.exon3;Parent=MS.gene69681.t1 |
| chr8.3 | CDS | 37124672 | 37125151 | 37124672 | ID=cds.MS.gene69681.t1;Parent=MS.gene69681.t1 |
| chr8.3 | exon | 37124093 | 37124560 | 37124093 | ID=MS.gene69681.t1.exon4;Parent=MS.gene69681.t1 |
| chr8.3 | CDS | 37124093 | 37124560 | 37124093 | ID=cds.MS.gene69681.t1;Parent=MS.gene69681.t1 |
| Gene Sequence |
| Protein sequence |
