Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69931.t1 | XP_003591003.1 | 93.7 | 477 | 26 | 3 | 1 | 476 | 84 | 557 | 3.30E-223 | 784.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69931.t1 | Q8H181 | 43.3 | 531 | 198 | 13 | 21 | 471 | 103 | 610 | 8.3e-74 | 279.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69931.t1 | G7I6V9 | 93.7 | 477 | 26 | 3 | 1 | 476 | 84 | 557 | 2.4e-223 | 784.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69931.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051789 | MS.gene69931 | 0.809919 | 1.49E-50 | -1.69E-46 |
| MS.gene054184 | MS.gene69931 | 0.811477 | 6.87E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene69931 | 0.809873 | 1.53E-50 | -1.69E-46 |
| MS.gene055133 | MS.gene69931 | 0.826221 | 3.06E-54 | -1.69E-46 |
| MS.gene057754 | MS.gene69931 | 0.803213 | 3.88E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69931.t1 | MTR_1g081180 | 96.017 | 477 | 15 | 3 | 1 | 476 | 84 | 557 | 0.0 | 935 |
| MS.gene69931.t1 | MTR_7g114860 | 47.153 | 439 | 152 | 16 | 3 | 426 | 106 | 479 | 2.54e-106 | 325 |
| MS.gene69931.t1 | MTR_1g098900 | 35.034 | 294 | 160 | 7 | 144 | 424 | 266 | 541 | 2.85e-47 | 173 |
| MS.gene69931.t1 | MTR_1g098900 | 40.000 | 100 | 57 | 2 | 324 | 423 | 46 | 142 | 3.40e-16 | 81.6 |
| MS.gene69931.t1 | MTR_1g098900 | 45.882 | 85 | 39 | 2 | 21 | 98 | 58 | 142 | 1.02e-13 | 73.9 |
| MS.gene69931.t1 | MTR_2g026725 | 34.043 | 282 | 154 | 6 | 172 | 447 | 117 | 372 | 3.92e-37 | 140 |
| MS.gene69931.t1 | MTR_1g098870 | 34.363 | 259 | 136 | 4 | 169 | 426 | 236 | 461 | 4.80e-35 | 137 |
| MS.gene69931.t1 | MTR_1g098870 | 40.217 | 92 | 52 | 2 | 335 | 426 | 55 | 143 | 4.15e-14 | 75.1 |
| MS.gene69931.t1 | MTR_1g098870 | 45.882 | 85 | 39 | 2 | 21 | 98 | 56 | 140 | 2.30e-13 | 72.8 |
| MS.gene69931.t1 | MTR_6g035370 | 59.783 | 92 | 35 | 1 | 335 | 426 | 464 | 553 | 1.13e-27 | 117 |
| MS.gene69931.t1 | MTR_6g035370 | 40.860 | 93 | 52 | 2 | 333 | 425 | 53 | 142 | 1.71e-15 | 79.3 |
| MS.gene69931.t1 | MTR_6g035370 | 42.353 | 85 | 42 | 2 | 21 | 98 | 56 | 140 | 8.85e-13 | 70.9 |
| MS.gene69931.t1 | MTR_1g060990 | 29.707 | 239 | 147 | 8 | 21 | 242 | 132 | 366 | 4.56e-18 | 87.0 |
| MS.gene69931.t1 | MTR_1g060990 | 39.785 | 93 | 52 | 3 | 335 | 426 | 131 | 220 | 1.28e-12 | 70.1 |
| MS.gene69931.t1 | MTR_1g492790 | 36.090 | 133 | 72 | 4 | 298 | 420 | 68 | 197 | 2.52e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69931.t1 | AT5G28300 | 42.243 | 535 | 200 | 17 | 20 | 471 | 102 | 610 | 3.69e-102 | 318 |
| MS.gene69931.t1 | AT1G76890 | 38.806 | 268 | 130 | 4 | 160 | 426 | 252 | 486 | 2.22e-47 | 172 |
| MS.gene69931.t1 | AT1G76890 | 46.591 | 88 | 44 | 2 | 333 | 420 | 39 | 123 | 1.63e-16 | 82.8 |
| MS.gene69931.t1 | AT1G76890 | 48.193 | 83 | 36 | 2 | 21 | 96 | 42 | 124 | 9.78e-14 | 73.9 |
| MS.gene69931.t1 | AT1G76880 | 58.696 | 92 | 36 | 1 | 335 | 426 | 408 | 497 | 2.33e-28 | 119 |
| MS.gene69931.t1 | AT1G76880 | 39.048 | 105 | 61 | 2 | 333 | 437 | 59 | 160 | 3.22e-15 | 78.6 |
| MS.gene69931.t1 | AT1G76880 | 45.882 | 85 | 39 | 2 | 21 | 98 | 62 | 146 | 6.20e-12 | 68.2 |
| MS.gene69931.t1 | AT1G33240 | 51.786 | 112 | 43 | 2 | 335 | 437 | 435 | 544 | 8.53e-27 | 114 |
| MS.gene69931.t1 | AT1G33240 | 43.820 | 89 | 47 | 2 | 335 | 423 | 62 | 147 | 3.65e-17 | 84.7 |
| MS.gene69931.t1 | AT1G33240 | 48.235 | 85 | 37 | 2 | 21 | 98 | 63 | 147 | 2.49e-16 | 82.0 |
| MS.gene69931.t1 | AT1G33240 | 51.786 | 112 | 43 | 2 | 335 | 437 | 435 | 544 | 9.39e-27 | 114 |
| MS.gene69931.t1 | AT1G33240 | 43.820 | 89 | 47 | 2 | 335 | 423 | 62 | 147 | 3.73e-17 | 84.7 |
| MS.gene69931.t1 | AT1G33240 | 48.235 | 85 | 37 | 2 | 21 | 98 | 63 | 147 | 3.28e-16 | 82.0 |
| MS.gene69931.t1 | AT1G33240 | 51.786 | 112 | 43 | 2 | 335 | 437 | 396 | 505 | 1.08e-26 | 114 |
| MS.gene69931.t1 | AT5G47660 | 33.209 | 268 | 131 | 12 | 157 | 424 | 169 | 388 | 3.60e-19 | 89.7 |
| MS.gene69931.t1 | AT3G10000 | 27.841 | 176 | 113 | 5 | 255 | 428 | 17 | 180 | 1.37e-14 | 76.3 |
| MS.gene69931.t1 | AT5G03680 | 42.857 | 91 | 48 | 3 | 335 | 424 | 119 | 206 | 1.19e-13 | 73.6 |
| MS.gene69931.t1 | AT3G10000 | 25.714 | 175 | 108 | 5 | 255 | 428 | 17 | 170 | 8.76e-12 | 67.4 |
Find 89 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGATTTGAAGTGTTTA+AGG | 0.195477 | 1.4:-65925692 | MS.gene69931:CDS |
| GTCTTTGATCTCTTTCAATT+TGG | 0.216907 | 1.4:+65926608 | None:intergenic |
| ATAAGGCTATATGAAGAAAT+AGG | 0.236435 | 1.4:+65925232 | None:intergenic |
| AATCACAATCAAAATAGTTT+TGG | 0.297232 | 1.4:-65925946 | MS.gene69931:CDS |
| CTCTCTCGCTGCTCGATATA+AGG | 0.299308 | 1.4:+65925215 | None:intergenic |
| TCCTTCTTCTTCTACTACTT+TGG | 0.306363 | 1.4:-65925278 | MS.gene69931:CDS |
| AATGCCAACACTTCATCTTT+TGG | 0.317647 | 1.4:+65925172 | None:intergenic |
| TTTCAAGAGTTTCCGGATTA+GGG | 0.337138 | 1.4:+65925341 | None:intergenic |
| AGGGTTGAGCTAGGGTTTAA+AGG | 0.338931 | 1.4:+65925301 | None:intergenic |
| GAGCTAGGGTTTAAAGGTAT+TGG | 0.343984 | 1.4:+65925307 | None:intergenic |
| ACATGTTCCCAAGTGAAATC+TGG | 0.352061 | 1.4:+65926499 | None:intergenic |
| GAACGAGGTGCAAGACAAAA+TGG | 0.355649 | 1.4:-65925833 | MS.gene69931:CDS |
| GAACAAAGAGCTTGAGTTGA+TGG | 0.361917 | 1.4:-65925530 | MS.gene69931:CDS |
| GATAGATTTGAAGTGTTTAA+GGG | 0.370463 | 1.4:-65925691 | MS.gene69931:CDS |
| AGCAGCGAGAGAGACGATAT+TGG | 0.377007 | 1.4:-65925205 | MS.gene69931:CDS |
| GAAGAAGGAAGGGTTGAGCT+AGG | 0.386310 | 1.4:+65925292 | None:intergenic |
| CACAGGAAGCTAGCTGAACT+TGG | 0.401976 | 1.4:-65926036 | MS.gene69931:intron |
| TTCTTCTTCTACTACTTTGG+TGG | 0.410965 | 1.4:-65925275 | MS.gene69931:CDS |
| AGTTTAGTAGAGAAGAAGCT+TGG | 0.425700 | 1.4:-65925576 | MS.gene69931:CDS |
| CAACAACAAGGCACCACTTT+GGG | 0.425965 | 1.4:-65925101 | MS.gene69931:CDS |
| TTGAGCAATCTTTATAATCA+AGG | 0.426028 | 1.4:-65924923 | MS.gene69931:CDS |
| GAGAAGAAGAGGAAAAGATC+AGG | 0.430204 | 1.4:-65925718 | MS.gene69931:CDS |
| TAAGGCTATATGAAGAAATA+GGG | 0.437015 | 1.4:+65925233 | None:intergenic |
| TCACAAGGAATGTTGGAGTT+GGG | 0.439213 | 1.4:-65925070 | MS.gene69931:CDS |
| GAGAATTTCACAAGGAATGT+TGG | 0.441400 | 1.4:-65925077 | MS.gene69931:CDS |
| TTCCTCAACTCATTGATCCT+TGG | 0.453786 | 1.4:-65926579 | MS.gene69931:CDS |
| TTCACAAGGAATGTTGGAGT+TGG | 0.454378 | 1.4:-65925071 | MS.gene69931:CDS |
| CACCTGCACCAGCACCATCT+TGG | 0.460031 | 1.4:+65924804 | None:intergenic |
| AAATCTAGTTGAGGCTGAAA+AGG | 0.460400 | 1.4:-65925857 | MS.gene69931:CDS |
| AAGAAGGAAGGGTTGAGCTA+GGG | 0.460441 | 1.4:+65925293 | None:intergenic |
| TTGCTCAATAGATGAAAGTA+AGG | 0.463276 | 1.4:+65924938 | None:intergenic |
| GAGGTTTATCAAGGTGGTGG+GGG | 0.479843 | 1.4:-65925892 | MS.gene69931:CDS |
| CTCAAGTGGGGCCTCCAAGC+TGG | 0.484767 | 1.4:-65924775 | MS.gene69931:CDS |
| TTCAAGAATGGATGATGTAT+TGG | 0.485834 | 1.4:-65925791 | MS.gene69931:CDS |
| CAAAGGATGCTAATAGGAAA+AGG | 0.488346 | 1.4:-65924982 | MS.gene69931:CDS |
| GCAACAACAAGGCACCACTT+TGG | 0.489891 | 1.4:-65925102 | MS.gene69931:CDS |
| GTCAAAGAAAAGTGAAGAAG+AGG | 0.493141 | 1.4:-65925767 | MS.gene69931:CDS |
| TGAAGATGACATTGAAGCTA+AGG | 0.499602 | 1.4:+65925423 | None:intergenic |
| CAAAGAGGTGCAAGGAGAAG+TGG | 0.502256 | 1.4:-65925033 | MS.gene69931:CDS |
| GAAGAAGAGGTAGTTGAGAA+AGG | 0.502624 | 1.4:-65925754 | MS.gene69931:CDS |
| GCACATGAACAAGCTATTGC+TGG | 0.507249 | 1.4:-65925508 | MS.gene69931:CDS |
| CATGTTCCCAAGTGAAATCT+GGG | 0.514235 | 1.4:+65926500 | None:intergenic |
| GCAGGTGAGTCTTCTCAAGT+GGG | 0.514949 | 1.4:-65924788 | MS.gene69931:CDS |
| GTTGGTTCCCAGATTTCACT+TGG | 0.516402 | 1.4:-65926507 | MS.gene69931:CDS |
| GCACTCACAAAACCCTAATC+CGG | 0.519084 | 1.4:-65925353 | MS.gene69931:CDS |
| GAAGAGGTTTATCAAGGTGG+TGG | 0.520513 | 1.4:-65925895 | MS.gene69931:CDS |
| AACCAAGATGGTGCTGGTGC+AGG | 0.525566 | 1.4:-65924806 | MS.gene69931:CDS |
| ATTTGTTACTGAGCTGGAAG+AGG | 0.529219 | 1.4:-65925911 | MS.gene69931:CDS |
| TGCAGGTGAGTCTTCTCAAG+TGG | 0.532154 | 1.4:-65924789 | MS.gene69931:CDS |
| AAGTAGTAGAAGAAGAAGGA+AGG | 0.534716 | 1.4:+65925281 | None:intergenic |
| GAGACGATATTGGTAGAAGA+TGG | 0.544390 | 1.4:-65925195 | MS.gene69931:CDS |
| TGGGAACCAACTCTCCATGC+TGG | 0.546340 | 1.4:+65926519 | None:intergenic |
| TGTAGAGGAGGATTCAAGAA+TGG | 0.554166 | 1.4:-65925803 | MS.gene69931:CDS |
| AGAGGTTTATCAAGGTGGTG+GGG | 0.556530 | 1.4:-65925893 | MS.gene69931:CDS |
| TAGTAAAATTACCAGCTTGG+AGG | 0.557445 | 1.4:+65924764 | None:intergenic |
| TCAGATCCAGCATGGAGAGT+TGG | 0.563903 | 1.4:-65926525 | MS.gene69931:CDS |
| CTACAAATGATGAGAAGAAG+AGG | 0.565637 | 1.4:-65925729 | MS.gene69931:CDS |
| AAAGAGGTGCAAGGAGAAGT+GGG | 0.573771 | 1.4:-65925032 | MS.gene69931:CDS |
| ACCAAAGTAGTAGAAGAAGA+AGG | 0.573800 | 1.4:+65925277 | None:intergenic |
| ATATAGTAAAATTACCAGCT+TGG | 0.574675 | 1.4:+65924761 | None:intergenic |
| ATGGCCAAAAGATGAAGTGT+TGG | 0.578682 | 1.4:-65925176 | MS.gene69931:CDS |
| AAGAGGTTTATCAAGGTGGT+GGG | 0.581021 | 1.4:-65925894 | MS.gene69931:CDS |
| CTTGAATCCTCCTCTACATG+AGG | 0.583768 | 1.4:+65925808 | None:intergenic |
| GAGCTGGAAGAGGTTTATCA+AGG | 0.586678 | 1.4:-65925901 | MS.gene69931:CDS |
| AGTAGTAGAAGAAGAAGGAA+GGG | 0.592188 | 1.4:+65925282 | None:intergenic |
| GAGTGTGGTGAAGAAAATGA+TGG | 0.595280 | 1.4:-65925659 | MS.gene69931:CDS |
| GTCCAAGGATCAATGAGTTG+AGG | 0.597929 | 1.4:+65926577 | None:intergenic |
| GAAATAGGGTTGTTCTTGCG+AGG | 0.598239 | 1.4:+65925247 | None:intergenic |
| TGTGAAATTCTCTCCCAAAG+TGG | 0.599247 | 1.4:+65925088 | None:intergenic |
| AGCTTGGAAGAAACAAGAGA+TGG | 0.599559 | 1.4:-65925560 | MS.gene69931:CDS |
| TTTGAAGATCAGATCCAGCA+TGG | 0.607084 | 1.4:-65926533 | MS.gene69931:CDS |
| CTTTGGGAGAGAATTTCACA+AGG | 0.610777 | 1.4:-65925085 | MS.gene69931:CDS |
| CAAAATGGACCCTCATGTAG+AGG | 0.618548 | 1.4:-65925818 | MS.gene69931:CDS |
| GATGAAAACCAAGATGGTGC+TGG | 0.618902 | 1.4:-65924812 | MS.gene69931:CDS |
| TCACTTGGGAACATGTCTCA+AGG | 0.620742 | 1.4:-65926492 | MS.gene69931:intron |
| AGAAGGAAACAGCAACAACA+AGG | 0.622176 | 1.4:-65925113 | MS.gene69931:CDS |
| AGAACTTCATCATTAGTCCA+AGG | 0.625382 | 1.4:+65926562 | None:intergenic |
| AGAAAGCAATAACGTGAATG+TGG | 0.625602 | 1.4:-65924870 | MS.gene69931:CDS |
| CAGGTGAGTCTTCTCAAGTG+GGG | 0.628435 | 1.4:-65924787 | MS.gene69931:CDS |
| TTGAATCCTCCTCTACATGA+GGG | 0.632417 | 1.4:+65925809 | None:intergenic |
| TTGGTTCCCAGATTTCACTT+GGG | 0.635745 | 1.4:-65926506 | MS.gene69931:CDS |
| GAGAAGTGCAAAGAGGTGCA+AGG | 0.639549 | 1.4:-65925041 | MS.gene69931:CDS |
| ACACAAGATGAAAACCAAGA+TGG | 0.647031 | 1.4:-65924818 | MS.gene69931:CDS |
| AATGGACCCTCATGTAGAGG+AGG | 0.651973 | 1.4:-65925815 | MS.gene69931:CDS |
| CTGGAAGAGGTTTATCAAGG+TGG | 0.657958 | 1.4:-65925898 | MS.gene69931:CDS |
| TGAGGCTGAAAAGGCGAACG+AGG | 0.666720 | 1.4:-65925848 | MS.gene69931:CDS |
| TGTTGGCATTGATAAACTTG+AGG | 0.669533 | 1.4:-65925159 | MS.gene69931:CDS |
| GAATGTGGCTGAAGAAAATG+TGG | 0.683811 | 1.4:-65924855 | MS.gene69931:CDS |
| GATACAAGAGAAGTGCAAAG+AGG | 0.707168 | 1.4:-65925048 | MS.gene69931:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGATGAATTTATTAATTAT+TGG | + | chr1.4:65924997-65925016 | None:intergenic | 15.0% |
| !! | TTTCTGGATTTATATATTTA+TGG | - | chr1.4:65925328-65925347 | MS.gene69931:CDS | 15.0% |
| !! | AGCTCATATAATTATTCATT+TGG | + | chr1.4:65925017-65925036 | None:intergenic | 20.0% |
| !! | TTGTTAATGACTTGATTAAA+TGG | + | chr1.4:65924969-65924988 | None:intergenic | 20.0% |
| !!! | AATCACAATCAAAATAGTTT+TGG | - | chr1.4:65925445-65925464 | MS.gene69931:CDS | 20.0% |
| !!! | CTATGATTAATTGTTTTTTC+TGG | - | chr1.4:65925312-65925331 | MS.gene69931:CDS | 20.0% |
| !!! | TATTAAAAAAAGTATCCATG+TGG | - | chr1.4:65925125-65925144 | MS.gene69931:CDS | 20.0% |
| ! | AACAACAATGAAGAAAAAGA+AGG | - | chr1.4:65926261-65926280 | MS.gene69931:intron | 25.0% |
| ! | ATAAGGCTATATGAAGAAAT+AGG | + | chr1.4:65926162-65926181 | None:intergenic | 25.0% |
| ! | GAATAACAAAAATCTAGTTG+AGG | - | chr1.4:65925525-65925544 | MS.gene69931:CDS | 25.0% |
| ! | TAAGGCTATATGAAGAAATA+GGG | + | chr1.4:65926161-65926180 | None:intergenic | 25.0% |
| ! | TTAAGAAAAGAAGAAATTCG+TGG | + | chr1.4:65925075-65925094 | None:intergenic | 25.0% |
| ! | TTGAGCAATCTTTATAATCA+AGG | - | chr1.4:65926468-65926487 | MS.gene69931:intron | 25.0% |
| !! | AATTCTGTTCCTTCAATTTT+TGG | + | chr1.4:65925230-65925249 | None:intergenic | 25.0% |
| !! | GATAGATTTGAAGTGTTTAA+GGG | - | chr1.4:65925700-65925719 | MS.gene69931:CDS | 25.0% |
| !! | TGATAGATTTGAAGTGTTTA+AGG | - | chr1.4:65925699-65925718 | MS.gene69931:CDS | 25.0% |
| ATGACTTGATTAAATGGATG+AGG | + | chr1.4:65924963-65924982 | None:intergenic | 30.0% | |
| CAAGTACTTCAGAAAAACAA+AGG | - | chr1.4:65926392-65926411 | MS.gene69931:intron | 30.0% | |
| GAAAAACAAAGGATGCTAAT+AGG | - | chr1.4:65926403-65926422 | MS.gene69931:intron | 30.0% | |
| GAAATAGGACCAAAAATTGA+AGG | - | chr1.4:65925218-65925237 | MS.gene69931:CDS | 30.0% | |
| GTCTTTGATCTCTTTCAATT+TGG | + | chr1.4:65924786-65924805 | None:intergenic | 30.0% | |
| TATATATTTATGGTGTGCAC+AGG | - | chr1.4:65925338-65925357 | MS.gene69931:CDS | 30.0% | |
| TTCAAGAATGGATGATGTAT+TGG | - | chr1.4:65925600-65925619 | MS.gene69931:CDS | 30.0% | |
| TTGCTCAATAGATGAAAGTA+AGG | + | chr1.4:65926456-65926475 | None:intergenic | 30.0% | |
| !!! | AGAGTTTTTTCAAGAGTTTC+CGG | + | chr1.4:65926060-65926079 | None:intergenic | 30.0% |
| !!! | TTTTAGATTTGTTACTGAGC+TGG | - | chr1.4:65925474-65925493 | MS.gene69931:CDS | 30.0% |
| AAATCTAGTTGAGGCTGAAA+AGG | - | chr1.4:65925534-65925553 | MS.gene69931:CDS | 35.0% | |
| AAGTAGTAGAAGAAGAAGGA+AGG | + | chr1.4:65926113-65926132 | None:intergenic | 35.0% | |
| ACACAAGATGAAAACCAAGA+TGG | - | chr1.4:65926573-65926592 | MS.gene69931:CDS | 35.0% | |
| ACCAAAGTAGTAGAAGAAGA+AGG | + | chr1.4:65926117-65926136 | None:intergenic | 35.0% | |
| AGAAAGCAATAACGTGAATG+TGG | - | chr1.4:65926521-65926540 | MS.gene69931:CDS | 35.0% | |
| AGAACTTCATCATTAGTCCA+AGG | + | chr1.4:65924832-65924851 | None:intergenic | 35.0% | |
| AGTAGTAGAAGAAGAAGGAA+GGG | + | chr1.4:65926112-65926131 | None:intergenic | 35.0% | |
| AGTTTAGTAGAGAAGAAGCT+TGG | - | chr1.4:65925815-65925834 | MS.gene69931:CDS | 35.0% | |
| CAAAGGATGCTAATAGGAAA+AGG | - | chr1.4:65926409-65926428 | MS.gene69931:intron | 35.0% | |
| CTACAAATGATGAGAAGAAG+AGG | - | chr1.4:65925662-65925681 | MS.gene69931:CDS | 35.0% | |
| GAGAATTTCACAAGGAATGT+TGG | - | chr1.4:65926314-65926333 | MS.gene69931:intron | 35.0% | |
| GTCAAAGAAAAGTGAAGAAG+AGG | - | chr1.4:65925624-65925643 | MS.gene69931:CDS | 35.0% | |
| TCCTTCTTCTTCTACTACTT+TGG | - | chr1.4:65926113-65926132 | MS.gene69931:intron | 35.0% | |
| TGAAGATGACATTGAAGCTA+AGG | + | chr1.4:65925971-65925990 | None:intergenic | 35.0% | |
| TGATTAAATGGATGAGGTGA+AGG | + | chr1.4:65924957-65924976 | None:intergenic | 35.0% | |
| TTCTTCTTCTACTACTTTGG+TGG | - | chr1.4:65926116-65926135 | MS.gene69931:intron | 35.0% | |
| TTTCAAGAGTTTCCGGATTA+GGG | + | chr1.4:65926053-65926072 | None:intergenic | 35.0% | |
| ! | AATGCCAACACTTCATCTTT+TGG | + | chr1.4:65926222-65926241 | None:intergenic | 35.0% |
| !! | TGTTGGCATTGATAAACTTG+AGG | - | chr1.4:65926232-65926251 | MS.gene69931:intron | 35.0% |
| !! | TTTTCAAGAGTTTCCGGATT+AGG | + | chr1.4:65926054-65926073 | None:intergenic | 35.0% |
| AAGAGGTTTATCAAGGTGGT+GGG | - | chr1.4:65925497-65925516 | MS.gene69931:CDS | 40.0% | |
| ACATGTTCCCAAGTGAAATC+TGG | + | chr1.4:65924895-65924914 | None:intergenic | 40.0% | |
| AGAAGGAAACAGCAACAACA+AGG | - | chr1.4:65926278-65926297 | MS.gene69931:intron | 40.0% | |
| AGCTTGGAAGAAACAAGAGA+TGG | - | chr1.4:65925831-65925850 | MS.gene69931:CDS | 40.0% | |
| ATGGCCAAAAGATGAAGTGT+TGG | - | chr1.4:65926215-65926234 | MS.gene69931:intron | 40.0% | |
| CATGTTCCCAAGTGAAATCT+GGG | + | chr1.4:65924894-65924913 | None:intergenic | 40.0% | |
| GAAGAAGAGGTAGTTGAGAA+AGG | - | chr1.4:65925637-65925656 | MS.gene69931:CDS | 40.0% | |
| GAATGTGGCTGAAGAAAATG+TGG | - | chr1.4:65926536-65926555 | MS.gene69931:CDS | 40.0% | |
| GAGAAGAAGAGGAAAAGATC+AGG | - | chr1.4:65925673-65925692 | MS.gene69931:CDS | 40.0% | |
| GAGACGATATTGGTAGAAGA+TGG | - | chr1.4:65926196-65926215 | MS.gene69931:intron | 40.0% | |
| GAGTGTGGTGAAGAAAATGA+TGG | - | chr1.4:65925732-65925751 | MS.gene69931:CDS | 40.0% | |
| GTGTTTGTGAGCTGAATTGA+AGG | + | chr1.4:65925171-65925190 | None:intergenic | 40.0% | |
| TCACAAGGAATGTTGGAGTT+GGG | - | chr1.4:65926321-65926340 | MS.gene69931:intron | 40.0% | |
| TGTAGAGGAGGATTCAAGAA+TGG | - | chr1.4:65925588-65925607 | MS.gene69931:CDS | 40.0% | |
| TGTGAAATTCTCTCCCAAAG+TGG | + | chr1.4:65926306-65926325 | None:intergenic | 40.0% | |
| TTCACAAGGAATGTTGGAGT+TGG | - | chr1.4:65926320-65926339 | MS.gene69931:intron | 40.0% | |
| TTCCTCAACTCATTGATCCT+TGG | - | chr1.4:65924812-65924831 | MS.gene69931:CDS | 40.0% | |
| TTGAATCCTCCTCTACATGA+GGG | + | chr1.4:65925585-65925604 | None:intergenic | 40.0% | |
| TTGGTTCCCAGATTTCACTT+GGG | - | chr1.4:65924885-65924904 | MS.gene69931:CDS | 40.0% | |
| TTTGAAGATCAGATCCAGCA+TGG | - | chr1.4:65924858-65924877 | MS.gene69931:CDS | 40.0% | |
| ! | ACGTAGTGCTGAAAAATGCA+AGG | - | chr1.4:65925384-65925403 | MS.gene69931:CDS | 40.0% |
| ! | ATTTGTTACTGAGCTGGAAG+AGG | - | chr1.4:65925480-65925499 | MS.gene69931:CDS | 40.0% |
| ! | CTTTGGGAGAGAATTTCACA+AGG | - | chr1.4:65926306-65926325 | MS.gene69931:intron | 40.0% |
| ! | GAGCTAGGGTTTAAAGGTAT+TGG | + | chr1.4:65926087-65926106 | None:intergenic | 40.0% |
| ! | GATACAAGAGAAGTGCAAAG+AGG | - | chr1.4:65926343-65926362 | MS.gene69931:intron | 40.0% |
| ! | TAAGGGTTTTTGTGAGAGTG+TGG | - | chr1.4:65925717-65925736 | MS.gene69931:CDS | 40.0% |
| !! | GAACAAAGAGCTTGAGTTGA+TGG | - | chr1.4:65925861-65925880 | MS.gene69931:CDS | 40.0% |
| !! | TTTTGGTCCTATTTCTCTCG+AGG | + | chr1.4:65925213-65925232 | None:intergenic | 40.0% |
| AAGAAGGAAGGGTTGAGCTA+GGG | + | chr1.4:65926101-65926120 | None:intergenic | 45.0% | |
| ACACACACCTCGAGAGAAAT+AGG | - | chr1.4:65925203-65925222 | MS.gene69931:CDS | 45.0% | |
| AGAGGTTTATCAAGGTGGTG+GGG | - | chr1.4:65925498-65925517 | MS.gene69931:CDS | 45.0% | |
| AGGGTTGAGCTAGGGTTTAA+AGG | + | chr1.4:65926093-65926112 | None:intergenic | 45.0% | |
| CAAAATGGACCCTCATGTAG+AGG | - | chr1.4:65925573-65925592 | MS.gene69931:CDS | 45.0% | |
| CTGGAAGAGGTTTATCAAGG+TGG | - | chr1.4:65925493-65925512 | MS.gene69931:CDS | 45.0% | |
| CTTGAATCCTCCTCTACATG+AGG | + | chr1.4:65925586-65925605 | None:intergenic | 45.0% | |
| GAAATAGGGTTGTTCTTGCG+AGG | + | chr1.4:65926147-65926166 | None:intergenic | 45.0% | |
| GAACGAGGTGCAAGACAAAA+TGG | - | chr1.4:65925558-65925577 | MS.gene69931:CDS | 45.0% | |
| GAAGAGGTTTATCAAGGTGG+TGG | - | chr1.4:65925496-65925515 | MS.gene69931:CDS | 45.0% | |
| GAGCTGGAAGAGGTTTATCA+AGG | - | chr1.4:65925490-65925509 | MS.gene69931:CDS | 45.0% | |
| GATGAAAACCAAGATGGTGC+TGG | - | chr1.4:65926579-65926598 | MS.gene69931:CDS | 45.0% | |
| GCACATGAACAAGCTATTGC+TGG | - | chr1.4:65925883-65925902 | MS.gene69931:CDS | 45.0% | |
| GCACTCACAAAACCCTAATC+CGG | - | chr1.4:65926038-65926057 | MS.gene69931:intron | 45.0% | |
| GTCCAAGGATCAATGAGTTG+AGG | + | chr1.4:65924817-65924836 | None:intergenic | 45.0% | |
| GTGTGTCTTTGTCTACCACA+TGG | + | chr1.4:65925143-65925162 | None:intergenic | 45.0% | |
| TCACTTGGGAACATGTCTCA+AGG | - | chr1.4:65924899-65924918 | MS.gene69931:CDS | 45.0% | |
| ! | AAAGAGGTGCAAGGAGAAGT+GGG | - | chr1.4:65926359-65926378 | MS.gene69931:intron | 45.0% |
| ! | CAACAACAAGGCACCACTTT+GGG | - | chr1.4:65926290-65926309 | MS.gene69931:intron | 45.0% |
| ! | GTTGGTTCCCAGATTTCACT+TGG | - | chr1.4:65924884-65924903 | MS.gene69931:CDS | 45.0% |
| AATGGACCCTCATGTAGAGG+AGG | - | chr1.4:65925576-65925595 | MS.gene69931:CDS | 50.0% | |
| AGCAGCGAGAGAGACGATAT+TGG | - | chr1.4:65926186-65926205 | MS.gene69931:intron | 50.0% | |
| CACAGGAAGCTAGCTGAACT+TGG | - | chr1.4:65925355-65925374 | MS.gene69931:CDS | 50.0% | |
| CAGGTGAGTCTTCTCAAGTG+GGG | - | chr1.4:65926604-65926623 | MS.gene69931:CDS | 50.0% | |
| CTCTCTCGCTGCTCGATATA+AGG | + | chr1.4:65926179-65926198 | None:intergenic | 50.0% | |
| GAAGAAGGAAGGGTTGAGCT+AGG | + | chr1.4:65926102-65926121 | None:intergenic | 50.0% | |
| GCAGGTGAGTCTTCTCAAGT+GGG | - | chr1.4:65926603-65926622 | MS.gene69931:CDS | 50.0% | |
| TCAGATCCAGCATGGAGAGT+TGG | - | chr1.4:65924866-65924885 | MS.gene69931:CDS | 50.0% | |
| TGCAGGTGAGTCTTCTCAAG+TGG | - | chr1.4:65926602-65926621 | MS.gene69931:CDS | 50.0% | |
| ! | CAAAGAGGTGCAAGGAGAAG+TGG | - | chr1.4:65926358-65926377 | MS.gene69931:intron | 50.0% |
| ! | GAGAAGTGCAAAGAGGTGCA+AGG | - | chr1.4:65926350-65926369 | MS.gene69931:intron | 50.0% |
| ! | GAGGTTTATCAAGGTGGTGG+GGG | - | chr1.4:65925499-65925518 | MS.gene69931:CDS | 50.0% |
| ! | GCAACAACAAGGCACCACTT+TGG | - | chr1.4:65926289-65926308 | MS.gene69931:intron | 50.0% |
| TGAGGCTGAAAAGGCGAACG+AGG | - | chr1.4:65925543-65925562 | MS.gene69931:CDS | 55.0% | |
| TGGGAACCAACTCTCCATGC+TGG | + | chr1.4:65924875-65924894 | None:intergenic | 55.0% | |
| !! | AACCAAGATGGTGCTGGTGC+AGG | - | chr1.4:65926585-65926604 | MS.gene69931:CDS | 55.0% |
| CACCTGCACCAGCACCATCT+TGG | + | chr1.4:65926590-65926609 | None:intergenic | 60.0% | |
| CTCTCGAGGTGTGTGTCTCG+TGG | + | chr1.4:65925199-65925218 | None:intergenic | 60.0% | |
| CTCAAGTGGGGCCTCCAAGC+TGG | - | chr1.4:65926616-65926635 | MS.gene69931:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 65924772 | 65926641 | 65924772 | ID=MS.gene69931 |
| chr1.4 | mRNA | 65924772 | 65926641 | 65924772 | ID=MS.gene69931.t1;Parent=MS.gene69931 |
| chr1.4 | exon | 65926493 | 65926641 | 65926493 | ID=MS.gene69931.t1.exon1;Parent=MS.gene69931.t1 |
| chr1.4 | CDS | 65926493 | 65926641 | 65926493 | ID=cds.MS.gene69931.t1;Parent=MS.gene69931.t1 |
| chr1.4 | exon | 65924772 | 65926053 | 65924772 | ID=MS.gene69931.t1.exon2;Parent=MS.gene69931.t1 |
| chr1.4 | CDS | 65924772 | 65926053 | 65924772 | ID=cds.MS.gene69931.t1;Parent=MS.gene69931.t1 |
| Gene Sequence |
| Protein sequence |
