AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054185


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054185.t1 MTR_6g047590 93.916 263 16 0 1 263 215 477 1.38e-166 469
MS.gene054185.t1 MTR_6g047610 83.270 263 44 0 1 263 215 477 1.69e-157 447
MS.gene054185.t1 MTR_6g047640 84.030 263 42 0 1 263 216 478 3.78e-153 436
MS.gene054185.t1 MTR_6g047640 78.327 263 38 1 1 263 216 459 4.17e-144 412
MS.gene054185.t1 MTR_1g100180 50.965 259 127 0 1 259 228 486 4.29e-89 273
MS.gene054185.t1 MTR_1g021740 41.245 257 150 1 4 259 223 479 2.31e-65 211
MS.gene054185.t1 MTR_8g069470 37.931 261 161 1 4 263 238 498 3.10e-64 209
MS.gene054185.t1 MTR_7g087410 42.292 253 145 1 8 259 134 386 4.15e-64 206
MS.gene054185.t1 MTR_5g033100 42.412 257 147 1 4 259 244 500 2.66e-63 207
MS.gene054185.t1 MTR_7g087410 42.292 253 145 1 8 259 223 475 2.74e-63 206
MS.gene054185.t1 MTR_7g087430 39.921 253 151 1 8 259 134 386 3.25e-62 201
MS.gene054185.t1 MTR_7g087400 38.889 252 154 0 8 259 222 473 2.56e-61 201
MS.gene054185.t1 MTR_7g087370 38.492 252 155 0 8 259 193 444 1.29e-59 196
MS.gene054185.t1 MTR_2g088400 38.372 258 157 1 8 263 244 501 4.35e-59 195
MS.gene054185.t1 MTR_2g022980 37.795 254 156 1 8 259 240 493 4.61e-59 195
MS.gene054185.t1 MTR_5g090290 39.357 249 151 0 9 257 241 489 4.79e-58 194
MS.gene054185.t1 MTR_6g027200 39.683 252 152 0 8 259 229 480 9.94e-56 186
MS.gene054185.t1 MTR_4g048000 38.372 258 157 1 4 259 252 509 1.01e-54 184
MS.gene054185.t1 MTR_3g099700 35.094 265 170 2 1 263 231 495 1.29e-54 184
MS.gene054185.t1 MTR_8g063590 40.316 253 148 2 8 257 245 497 5.89e-53 179
MS.gene054185.t1 MTR_5g032720 37.023 262 163 2 4 263 224 485 2.00e-51 175
MS.gene054185.t1 MTR_6g027190 37.891 256 159 0 8 263 217 472 3.66e-51 174
MS.gene054185.t1 MTR_5g032750 37.872 235 145 1 26 259 247 481 7.44e-50 171
MS.gene054185.t1 MTR_3g099720 33.735 249 164 1 4 251 229 477 4.11e-46 161
MS.gene054185.t1 MTR_2g088400 39.252 214 128 1 8 219 244 457 4.80e-46 160
MS.gene054185.t1 MTR_5g087930 34.717 265 138 6 8 263 218 456 1.12e-43 154
MS.gene054185.t1 MTR_6g081410 33.333 267 174 2 1 263 210 476 1.27e-42 151
MS.gene054185.t1 MTR_6g081780 33.462 260 169 2 1 256 210 469 2.00e-42 151
MS.gene054185.t1 MTR_2g078930 36.145 249 157 1 1 247 228 476 3.86e-42 150
MS.gene054185.t1 MTR_8g106670 33.191 235 157 0 23 257 221 455 1.09e-41 149
MS.gene054185.t1 MTR_2g079020 36.145 249 157 1 1 247 222 470 1.80e-41 149
MS.gene054185.t1 MTR_6g066380 33.708 267 173 2 1 263 212 478 2.46e-40 145
MS.gene054185.t1 MTR_2g078990 35.600 250 157 2 1 247 45 293 9.82e-40 140
MS.gene054185.t1 MTR_2g078970 35.600 250 157 2 1 247 216 464 4.45e-39 142
MS.gene054185.t1 MTR_6g081240 33.198 247 163 1 5 249 199 445 1.07e-37 137
MS.gene054185.t1 MTR_1g108990 32.895 228 153 0 29 256 240 467 1.24e-37 138
MS.gene054185.t1 MTR_1g108840 32.735 223 150 0 34 256 261 483 1.99e-36 135
MS.gene054185.t1 MTR_6g081400 30.233 258 178 1 1 256 201 458 3.16e-36 134
MS.gene054185.t1 MTR_6g081390 30.620 258 177 1 1 256 198 455 1.57e-35 132
MS.gene054185.t1 MTR_6g081810 33.810 210 139 0 47 256 234 443 1.75e-34 129
MS.gene054185.t1 MTR_6g081300 29.412 255 178 1 5 257 199 453 3.03e-34 129
MS.gene054185.t1 MTR_7g082810 31.140 228 157 0 29 256 235 462 4.56e-34 128
MS.gene054185.t1 MTR_2g078960 34.940 249 160 1 1 247 218 466 4.66e-34 128
MS.gene054185.t1 MTR_6g081310 31.102 254 173 1 5 256 197 450 3.01e-33 126
MS.gene054185.t1 MTR_2g079030 36.410 195 124 0 53 247 319 513 8.57e-33 125
MS.gene054185.t1 MTR_1g108810 31.349 252 171 1 1 250 219 470 2.79e-32 123
MS.gene054185.t1 MTR_6g004220 29.825 228 160 0 29 256 239 466 2.59e-31 120
MS.gene054185.t1 MTR_1g109060 32.479 234 158 0 23 256 233 466 6.55e-31 119
MS.gene054185.t1 MTR_7g082800 29.437 231 158 1 26 256 159 384 1.12e-30 118
MS.gene054185.t1 MTR_1g109060 32.636 239 158 1 23 261 233 468 1.29e-30 119
MS.gene054185.t1 MTR_6g004220 30.769 221 153 0 29 249 246 466 1.94e-30 119
MS.gene054185.t1 MTR_5g090280 30.534 262 148 3 23 257 151 405 4.30e-30 117
MS.gene054185.t1 MTR_5g010830 27.347 245 176 1 12 254 261 505 4.17e-24 101
MS.gene054185.t1 MTR_0039s0080 26.471 238 175 0 11 248 235 472 2.72e-23 99.0
MS.gene054185.t1 MTR_1g101500 26.891 238 172 1 13 248 261 498 5.42e-23 98.2
MS.gene054185.t1 MTR_3g111020 28.302 212 152 0 43 254 280 491 2.11e-21 93.6
MS.gene054185.t1 MTR_5g067460 27.805 205 140 2 51 251 292 492 1.47e-20 90.9
MS.gene054185.t1 MTR_6g043810 27.700 213 153 1 37 248 264 476 7.01e-20 89.0
MS.gene054185.t1 MTR_6g043810 27.700 213 153 1 37 248 254 466 7.40e-20 89.0
MS.gene054185.t1 MTR_2g435930 26.263 198 146 0 51 248 272 469 2.60e-17 81.6
MS.gene054185.t1 MTR_6g088805 25.877 228 165 2 26 251 236 461 8.06e-17 80.1
MS.gene054185.t1 MTR_4g027920 21.176 255 197 2 1 251 341 595 2.44e-15 75.9
MS.gene054185.t1 MTR_5g011540 24.797 246 178 2 18 263 251 489 2.09e-14 72.8
MS.gene054185.t1 MTR_8g102430 24.400 250 170 3 2 251 210 440 3.68e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054185.t1 AT4G00350 52.326 258 123 0 2 259 273 530 1.87e-95 290
MS.gene054185.t1 AT4G25640 54.054 259 119 0 1 259 218 476 4.21e-84 259
MS.gene054185.t1 AT4G25640 54.054 259 119 0 1 259 218 476 9.86e-84 259
MS.gene054185.t1 AT3G26590 42.188 256 146 2 6 259 131 386 2.81e-71 224
MS.gene054185.t1 AT4G25640 54.587 218 99 0 1 218 218 435 4.38e-71 226
MS.gene054185.t1 AT3G26590 42.188 256 146 2 6 259 233 488 2.00e-70 225
MS.gene054185.t1 AT1G47530 42.412 257 147 1 4 259 130 386 1.15e-67 214
MS.gene054185.t1 AT1G12950 39.689 257 154 1 4 259 254 510 4.87e-67 216
MS.gene054185.t1 AT1G47530 42.412 257 147 1 4 259 222 478 5.49e-67 215
MS.gene054185.t1 AT5G38030 39.300 257 155 1 4 259 232 488 8.17e-67 215
MS.gene054185.t1 AT1G23300 39.544 263 156 2 4 263 231 493 5.66e-66 214
MS.gene054185.t1 AT1G11670 40.698 258 151 1 4 259 237 494 3.35e-65 211
MS.gene054185.t1 AT1G61890 38.760 258 156 1 8 263 238 495 4.41e-65 211
MS.gene054185.t1 AT3G21690 38.550 262 159 1 4 263 239 500 3.55e-62 203
MS.gene054185.t1 AT4G21903 38.174 241 149 0 23 263 151 391 2.50e-61 198
MS.gene054185.t1 AT1G61890 39.592 245 146 1 8 250 238 482 7.09e-61 200
MS.gene054185.t1 AT4G21903 38.174 241 149 0 23 263 260 500 3.33e-60 198
MS.gene054185.t1 AT4G21910 38.174 241 149 0 23 263 262 502 1.76e-59 196
MS.gene054185.t1 AT4G21910 38.174 241 149 0 23 263 262 502 1.76e-59 196
MS.gene054185.t1 AT1G33110 39.370 254 153 1 8 260 227 480 2.59e-59 196
MS.gene054185.t1 AT4G21910 38.174 241 149 0 23 263 264 504 2.82e-59 196
MS.gene054185.t1 AT4G21910 38.174 241 149 0 23 263 264 504 2.82e-59 196
MS.gene054185.t1 AT1G33100 38.521 257 157 1 5 260 221 477 3.35e-57 190
MS.gene054185.t1 AT3G59030 40.426 235 140 0 23 257 259 493 3.23e-56 188
MS.gene054185.t1 AT1G33080 37.643 263 163 1 2 263 221 483 9.85e-56 186
MS.gene054185.t1 AT4G21903 39.207 227 138 0 23 249 260 486 1.05e-55 187
MS.gene054185.t1 AT1G33090 38.189 254 156 1 8 260 227 480 4.90e-55 184
MS.gene054185.t1 AT1G33080 38.956 249 151 1 2 249 221 469 6.24e-53 179
MS.gene054185.t1 AT5G65380 37.984 258 158 2 4 259 224 481 1.06e-52 178
MS.gene054185.t1 AT1G61890 40.000 215 125 3 8 219 238 451 2.04e-49 169
MS.gene054185.t1 AT3G03620 36.187 257 163 1 4 259 224 480 5.98e-49 169
MS.gene054185.t1 AT3G03620 36.187 257 163 1 4 259 224 480 5.98e-49 169
MS.gene054185.t1 AT5G10420 38.136 236 145 1 26 260 248 483 5.43e-46 160
MS.gene054185.t1 AT5G17700 35.000 260 168 1 4 262 221 480 2.23e-45 159
MS.gene054185.t1 AT5G17700 35.000 260 168 1 4 262 221 480 2.23e-45 159
MS.gene054185.t1 AT5G44050 35.907 259 164 2 3 259 226 484 2.85e-45 159
MS.gene054185.t1 AT3G23560 35.341 249 159 1 1 247 223 471 8.52e-39 141
MS.gene054185.t1 AT5G52450 32.692 260 171 2 1 257 210 468 4.79e-38 139
MS.gene054185.t1 AT3G23550 33.858 254 166 1 1 252 215 468 8.92e-38 138
MS.gene054185.t1 AT1G15170 31.923 260 175 1 1 258 99 358 4.83e-37 134
MS.gene054185.t1 AT1G15170 31.923 260 175 1 1 258 218 477 3.18e-36 134
MS.gene054185.t1 AT2G34360 33.333 261 162 6 1 257 211 463 1.14e-35 133
MS.gene054185.t1 AT1G15150 30.385 260 179 1 1 258 99 358 3.30e-35 129
MS.gene054185.t1 AT2G04040 29.457 258 180 2 1 256 211 468 3.69e-35 131
MS.gene054185.t1 AT1G15160 30.769 260 178 1 1 258 215 474 9.29e-35 130
MS.gene054185.t1 AT1G15150 30.385 260 179 1 1 258 215 474 1.48e-34 130
MS.gene054185.t1 AT2G04080 28.682 258 182 2 1 256 211 468 3.01e-34 129
MS.gene054185.t1 AT2G04070 29.457 258 180 1 1 256 211 468 1.26e-33 127
MS.gene054185.t1 AT1G73700 32.171 258 173 1 1 256 208 465 1.69e-33 127
MS.gene054185.t1 AT2G04050 30.734 218 151 0 39 256 251 468 2.54e-33 126
MS.gene054185.t1 AT2G04080 28.968 252 177 2 1 250 211 462 1.11e-32 124
MS.gene054185.t1 AT1G33110 37.853 177 109 1 8 183 227 403 1.40e-32 123
MS.gene054185.t1 AT1G71140 29.148 223 158 0 34 256 245 467 1.87e-31 121
MS.gene054185.t1 AT1G66760 32.710 214 144 0 40 253 125 338 1.17e-30 117
MS.gene054185.t1 AT1G15180 33.051 236 158 0 23 258 243 478 1.40e-30 119
MS.gene054185.t1 AT1G66760 32.710 214 144 0 40 253 253 466 6.89e-30 117
MS.gene054185.t1 AT1G66760 31.336 217 149 0 40 256 253 469 7.52e-30 117
MS.gene054185.t1 AT1G66780 28.992 238 161 2 23 256 243 476 3.74e-29 115
MS.gene054185.t1 AT2G34360 33.974 156 103 0 102 257 266 421 2.40e-27 109
MS.gene054185.t1 AT2G04100 28.125 224 161 0 39 262 254 477 2.54e-27 110
MS.gene054185.t1 AT2G04090 28.440 218 156 0 39 256 254 471 8.16e-27 108
MS.gene054185.t1 AT1G64820 28.829 222 150 2 39 256 253 470 2.17e-26 107
MS.gene054185.t1 AT2G04100 29.245 212 150 0 39 250 254 465 2.28e-26 107
MS.gene054185.t1 AT3G59030 34.177 158 104 0 23 180 259 416 1.37e-25 104
MS.gene054185.t1 AT4G23030 26.939 245 177 1 14 256 230 474 1.12e-20 91.3
MS.gene054185.t1 AT2G04066 27.068 133 97 0 124 256 31 163 1.25e-20 86.7
MS.gene054185.t1 AT5G17700 31.461 178 121 1 4 180 221 398 3.51e-20 89.4
MS.gene054185.t1 AT2G38510 24.017 229 173 1 24 251 215 443 3.85e-20 89.7
MS.gene054185.t1 AT1G58340 27.488 211 139 4 51 254 294 497 1.77e-18 85.1
MS.gene054185.t1 AT4G29140 26.772 254 182 3 1 251 240 492 2.81e-18 84.3
MS.gene054185.t1 AT3G23560 31.319 182 123 1 1 180 223 404 1.12e-17 82.4
MS.gene054185.t1 AT5G19700 27.126 247 179 1 2 248 224 469 9.46e-17 79.7
MS.gene054185.t1 AT1G71870 24.121 199 150 1 51 248 277 475 3.58e-16 78.2
MS.gene054185.t1 AT5G52050 25.346 217 162 0 35 251 261 477 3.84e-16 78.2
MS.gene054185.t1 AT1G15180 29.299 157 111 0 24 180 124 280 9.64e-13 67.8
MS.gene054185.t1 AT4G22790 24.453 274 185 5 1 262 212 475 1.39e-11 64.7

Find 0 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + 42608:7430-7449 MS.gene054185:intron 0.0%
!! ATGAAAAATAAAATAATACA+AGG - 42608:8154-8173 None:intergenic 10.0%
!!! ATCATTTTACATTATTTTTA+AGG + 42608:6488-6507 MS.gene054185:intron 10.0%
!!! ATGAATTTTTTTAGTTTTTT+TGG - 42608:8369-8388 None:intergenic 10.0%
!!! TATTTTTTTTTTTTTAGAAG+AGG - 42608:7458-7477 None:intergenic 10.0%
!!! TTATTTACATTTTAATTTTG+AGG + 42608:7038-7057 MS.gene054185:intron 10.0%
!!! TTTGAATATTTACATTTTTT+TGG + 42608:7674-7693 MS.gene054185:intron 10.0%
!!! TTTTTCCATTAAAAATTATT+GGG + 42608:7513-7532 MS.gene054185:intron 10.0%
!!! TTTTTTCCATTAAAAATTAT+TGG + 42608:7512-7531 MS.gene054185:intron 10.0%
!! AAATACTAACAATTACATTT+AGG + 42608:5694-5713 MS.gene054185:intron 15.0%
!! AAGTGAATAATTGAAAAATA+CGG - 42608:8312-8331 None:intergenic 15.0%
!! AATACTAACAATTACATTTA+GGG + 42608:5695-5714 MS.gene054185:intron 15.0%
!! ATATAATATAATATATGCAG+GGG + 42608:7973-7992 MS.gene054185:intron 15.0%
!! CAGTTATAAAATAAGAAAAT+GGG + 42608:6246-6265 MS.gene054185:intron 15.0%
!! CATAATTCATCTTTATAAAA+TGG + 42608:7289-7308 MS.gene054185:intron 15.0%
!! GATATAATATAATATATGCA+GGG + 42608:7972-7991 MS.gene054185:intron 15.0%
!! TATATATGTCATGTATATAT+TGG - 42608:6183-6202 None:intergenic 15.0%
!! TCAGTTATAAAATAAGAAAA+TGG + 42608:6245-6264 MS.gene054185:intron 15.0%
!! TGAACATTGAAAAAATTATA+TGG - 42608:6667-6686 None:intergenic 15.0%
!! TTAACATAAACACTTAATAT+AGG - 42608:7269-7288 None:intergenic 15.0%
!! TTTAAATTAAAACAAGTTGT+AGG - 42608:8482-8501 None:intergenic 15.0%
!! TTTCTTAAACAATAATCTTA+GGG + 42608:5814-5833 MS.gene054185:intron 15.0%
!!! AACAATTTTTAATAGATAAG+TGG - 42608:7646-7665 None:intergenic 15.0%
!!! ACTCTTTATAAACTATTTTT+AGG + 42608:7333-7352 MS.gene054185:intron 15.0%
!!! ATTCTAATTTTAAAGTTTCT+TGG + 42608:5544-5563 MS.gene054185:intron 15.0%
!!! ATTTATTGATAAAAAAGTGT+AGG - 42608:6588-6607 None:intergenic 15.0%
!!! TTTAATGTTATTTCAATATG+AGG - 42608:6159-6178 None:intergenic 15.0%
!!! TTTTCCATTAAAAATTATTG+GGG + 42608:7514-7533 MS.gene054185:intron 15.0%
!! AATGATTTGACAATTATGAT+TGG + 42608:5474-5493 MS.gene054185:intron 20.0%
!! ATATCAATTGAGTTATAATC+AGG - 42608:8254-8273 None:intergenic 20.0%
!! ATTCAATACAAAAGTAACAT+TGG - 42608:5357-5376 None:intergenic 20.0%
!! CTCAACTAAAAAATTATAGA+AGG - 42608:6359-6378 None:intergenic 20.0%
!! GACTATAAGTTAAACTAATT+AGG + 42608:5670-5689 MS.gene054185:intron 20.0%
!! GGATATAATATAATATATGC+AGG + 42608:7971-7990 MS.gene054185:intron 20.0%
!! GTATTTCATAGTGTAATTTA+TGG + 42608:8631-8650 MS.gene054185:intron 20.0%
!! GTTTCTTAAACAATAATCTT+AGG + 42608:5813-5832 MS.gene054185:intron 20.0%
!! TAATTCAAAGACTAAATTGA+TGG - 42608:8180-8199 None:intergenic 20.0%
!! TACTTAACCAAAAAAAAATG+TGG + 42608:8060-8079 MS.gene054185:intron 20.0%
!! TAGATTGACAATAAATTCTA+AGG - 42608:5982-6001 None:intergenic 20.0%
!! TTATACTTACCAAATTGAAT+AGG - 42608:5290-5309 None:intergenic 20.0%
!!! TCTTATCTCTTTTCAATATA+TGG + 42608:7483-7502 MS.gene054185:intron 20.0%
!!! TGAAAGCATATGATTTTATA+GGG + 42608:8412-8431 MS.gene054185:intron 20.0%
!!! TTCTTATTTTATAACTGAGT+TGG - 42608:6243-6262 None:intergenic 20.0%
!!! TTGAAAGCATATGATTTTAT+AGG + 42608:8411-8430 MS.gene054185:intron 20.0%
!!! TTTACATTTTAATTTTGAGG+AGG + 42608:7041-7060 MS.gene054185:intron 20.0%
! AATTTATGGAATATGATTGC+AGG + 42608:8645-8664 MS.gene054185:intron 25.0%
! ACATTATAGAGTGTAAGTAT+TGG - 42608:7393-7412 None:intergenic 25.0%
! AGAAACTTCATTCATGATTT+AGG - 42608:7236-7255 None:intergenic 25.0%
! ATTATGATGTGTAAATTCAG+TGG - 42608:6557-6576 None:intergenic 25.0%
! CATTGCTAGAATAATTAACA+AGG - 42608:8092-8111 None:intergenic 25.0%
! GAAACTTCATTCATGATTTA+GGG - 42608:7235-7254 None:intergenic 25.0%
! GCATTGTTTAAGCAATTTAA+AGG + 42608:5717-5736 MS.gene054185:intron 25.0%
! TCTTACAAATAATGATTGTG+AGG - 42608:7841-7860 None:intergenic 25.0%
! TTAATGTTCAACTTATCTTG+TGG + 42608:7763-7782 MS.gene054185:intron 25.0%
! TTATTGTCAATCTAAGTACT+TGG + 42608:5988-6007 MS.gene054185:intron 25.0%
! TTGGCATGTTATTACATTAT+TGG + 42608:7120-7139 MS.gene054185:CDS 25.0%
!! AAGACCCCAATAATTTTTAA+TGG - 42608:7521-7540 None:intergenic 25.0%
!! AATTAAGTCTATGTTTTCCT+CGG + 42608:7927-7946 MS.gene054185:intron 25.0%
!! ATGGATATTTTCTATTGCAT+TGG + 42608:5078-5097 MS.gene054185:CDS 25.0%
!! CTCTTTTCAATATATGGATT+TGG + 42608:7489-7508 MS.gene054185:intron 25.0%
!! GACTAGAAATTCATCTTTTA+TGG - 42608:8033-8052 None:intergenic 25.0%
!! TAAGTTGAACATTAATTCCT+TGG - 42608:7758-7777 None:intergenic 25.0%
!! TTTAAAGTTTCTTGGTTTCT+TGG + 42608:5552-5571 MS.gene054185:intron 25.0%
!!! AATTTTGAGGAGGTTTTTAT+AGG + 42608:7051-7070 MS.gene054185:intron 25.0%
!!! GCATATACCACATTTTTTTT+TGG - 42608:8070-8089 None:intergenic 25.0%
!!! TTTTTGGTCAAGTAACATAA+TGG - 42608:8353-8372 None:intergenic 25.0%
AAAGATGATCTTGGTATCAT+AGG - 42608:8127-8146 None:intergenic 30.0%
AGTGAATTAGCATACTTTCT+TGG + 42608:6896-6915 MS.gene054185:CDS 30.0%
AGTGTTTCACAAACTATATC+AGG + 42608:6938-6957 MS.gene054185:CDS 30.0%
ATACTTTCTTGGTATAACCA+TGG + 42608:6907-6926 MS.gene054185:CDS 30.0%
ATCAAACATAATTACCTCCT+TGG - 42608:7873-7892 None:intergenic 30.0%
CATTGTAACATTACTTTGCT+TGG + 42608:7725-7744 MS.gene054185:intron 30.0%
GAATTTACAATGCTAAGTCT+TGG + 42608:5172-5191 MS.gene054185:CDS 30.0%
GTTAAAATCACGAGTTAACA+TGG - 42608:6411-6430 None:intergenic 30.0%
TATCAGGTAATTACTTTGCT+TGG + 42608:6954-6973 MS.gene054185:intron 30.0%
TCAAGTTCCATATTGAATAG+AGG - 42608:7364-7383 None:intergenic 30.0%
TCACTTTACTTCACTAAAAG+TGG + 42608:7601-7620 MS.gene054185:intron 30.0%
TCATTATTTGTAAGACCAAC+TGG + 42608:7846-7865 MS.gene054185:CDS 30.0%
TGGTAATTTATGTCATTGGT+TGG + 42608:5098-5117 MS.gene054185:CDS 30.0%
TTTAAGCAATTTCAAAGTGC+TGG + 42608:5907-5926 MS.gene054185:intron 30.0%
! ACTTTTAGTGAAGTAAAGTG+AGG - 42608:7602-7621 None:intergenic 30.0%
! ATCTTTTATGGTGAACAAGT+AGG - 42608:8021-8040 None:intergenic 30.0%
! ATGTATCATATCCACACTTT+TGG - 42608:6870-6889 None:intergenic 30.0%
! GCATTGGTAATTTATGTCAT+TGG + 42608:5094-5113 MS.gene054185:CDS 30.0%
! GGTTTTACCTCTATTCAATA+TGG + 42608:7354-7373 MS.gene054185:intron 30.0%
! TATGGTTGGTTACATAAACT+TGG + 42608:7101-7120 MS.gene054185:CDS 30.0%
! TCGTTTTGCTGATATGAAAT+TGG + 42608:6111-6130 MS.gene054185:intron 30.0%
! TCTTTTATGGTGAACAAGTA+GGG - 42608:8020-8039 None:intergenic 30.0%
!!! GCTTTTAGTCTTAATGTTCA+GGG + 42608:5599-5618 MS.gene054185:intron 30.0%
!!! TAGGGCACTTTTTAAAGTAA+TGG + 42608:5832-5851 MS.gene054185:intron 30.0%
!!! TGCTTTTAGTCTTAATGTTC+AGG + 42608:5598-5617 MS.gene054185:intron 30.0%
AAACCCAGGTAAATTGCAAT+TGG - 42608:7150-7169 None:intergenic 35.0%
AACCCAGGTAAATTGCAATT+GGG - 42608:7149-7168 None:intergenic 35.0%
AATGAGTATTTGGATGCTCT+TGG - 42608:6758-6777 None:intergenic 35.0%
ACTTCACTAAAAGTGGTTTC+TGG + 42608:7608-7627 MS.gene054185:intron 35.0%
ACTTCATTCATGATTTAGGG+AGG - 42608:7232-7251 None:intergenic 35.0%
AGCATCCAAATACTCATTCT+TGG + 42608:6760-6779 MS.gene054185:CDS 35.0%
ATATGAACATTGCGATATGC+AGG + 42608:8270-8289 MS.gene054185:intron 35.0%
ATCCAAATACTCATTCTTGG+TGG + 42608:6763-6782 MS.gene054185:CDS 35.0%
ATGGGCATGAACAAAATCAA+AGG + 42608:6264-6283 MS.gene054185:intron 35.0%
ATTGTCTTGGATGGCATTTA+GGG + 42608:5141-5160 MS.gene054185:CDS 35.0%
CAAGGTCTAAAAGATGATCT+TGG - 42608:8136-8155 None:intergenic 35.0%
CATCATCTTTACCAAAAGTG+TGG + 42608:6856-6875 MS.gene054185:CDS 35.0%
CTCTTGGTTCCTATTCAATT+TGG + 42608:5278-5297 MS.gene054185:CDS 35.0%
GATGAATTGAGTCTCAAGTA+AGG - 42608:6436-6455 None:intergenic 35.0%
GATGGCATTTAGGGAATTAT+GGG + 42608:5150-5169 MS.gene054185:CDS 35.0%
GGTGTCCAACGTTTAAATTT+CGG - 42608:7999-8018 None:intergenic 35.0%
GTTTGCATTATTCTTCTTGC+TGG + 42608:5232-5251 MS.gene054185:CDS 35.0%
TCAACTTATCTTGTGGCTTA+GGG + 42608:7770-7789 MS.gene054185:intron 35.0%
TGTCAATCTAAGTACTTGGT+TGG + 42608:5992-6011 MS.gene054185:intron 35.0%
TTAATTCACATGTACACCGT+CGG - 42608:5524-5543 None:intergenic 35.0%
TTCAACTTATCTTGTGGCTT+AGG + 42608:7769-7788 MS.gene054185:intron 35.0%
TTGGAGTAAGTACAGCATTA+AGG + 42608:5642-5661 MS.gene054185:CDS 35.0%
! AGTTTTTGTCTTATGGCATG+AGG - 42608:6530-6549 None:intergenic 35.0%
! CACACTTTTGGTAAAGATGA+TGG - 42608:6858-6877 None:intergenic 35.0%
! GTTTTTATAGGTGTGGTCAT+TGG + 42608:7063-7082 MS.gene054185:intron 35.0%
! GTTTTTGTCTTATGGCATGA+GGG - 42608:6529-6548 None:intergenic 35.0%
! TGGCAAGAGTTTTTGTCTTA+TGG - 42608:6537-6556 None:intergenic 35.0%
! TTAGGTTAGCTCGGTTATTA+GGG + 42608:7950-7969 MS.gene054185:intron 35.0%
! TTTTTGTCTTATGGCATGAG+GGG - 42608:6528-6547 None:intergenic 35.0%
!! TTAGTCTTAATGTTCAGGGT+TGG + 42608:5603-5622 MS.gene054185:intron 35.0%
ACTCCCAATTGCAATTTACC+TGG + 42608:7143-7162 MS.gene054185:CDS 40.0%
ATCTGGTTAGAACAGTGGTA+TGG + 42608:5208-5227 MS.gene054185:CDS 40.0%
ATGCTAAGTCTTGGTTCATC+TGG + 42608:5181-5200 MS.gene054185:CDS 40.0%
ATGTCTCAGTCTCTTCTCAT+TGG + 42608:6788-6807 MS.gene054185:CDS 40.0%
CAATCCATTCCATCCTTCTT+TGG - 42608:5125-5144 None:intergenic 40.0%
CGGTGTAGAGATTATTGACA+CGG - 42608:5504-5523 None:intergenic 40.0%
CTCCCAATTGCAATTTACCT+GGG + 42608:7144-7163 MS.gene054185:CDS 40.0%
GAATGATCTGGTTAGAACAG+TGG + 42608:5203-5222 MS.gene054185:CDS 40.0%
GAGCAATCACAGGATTATCA+AGG - 42608:5261-5280 None:intergenic 40.0%
GATAATCCTGTGATTGCTCT+TGG + 42608:5262-5281 MS.gene054185:CDS 40.0%
GATTGTCTTGGATGGCATTT+AGG + 42608:5140-5159 MS.gene054185:CDS 40.0%
GGATGGCATTTAGGGAATTA+TGG + 42608:5149-5168 MS.gene054185:CDS 40.0%
GTCAATAATCTCTACACCGA+CGG + 42608:5505-5524 MS.gene054185:intron 40.0%
TGAAACACTGTTGAGAACCA+TGG - 42608:6927-6946 None:intergenic 40.0%
TGCCACCAAGAATGAGTATT+TGG - 42608:6768-6787 None:intergenic 40.0%
TGGCAAGTAATATCTCAGGA+TGG + 42608:5059-5078 MS.gene054185:CDS 40.0%
TGGGTTTCAACCAGCATTTA+GGG + 42608:7163-7182 MS.gene054185:CDS 40.0%
! AGTCTATGTTTTCCTCGGTT+AGG + 42608:7932-7951 MS.gene054185:intron 40.0%
! GTTAGGTTAGCTCGGTTATT+AGG + 42608:7949-7968 MS.gene054185:intron 40.0%
! TGAGGAGGTTTTTATAGGTG+TGG + 42608:7056-7075 MS.gene054185:intron 40.0%
! TTGGTTCATCTGGAATGATC+TGG + 42608:5191-5210 MS.gene054185:CDS 40.0%
!! AAGGATGGAATGGATTGTCT+TGG + 42608:5128-5147 MS.gene054185:CDS 40.0%
!! ATGGAATGGATTGTCTTGGA+TGG + 42608:5132-5151 MS.gene054185:CDS 40.0%
AATTACCTCCTTGGTCCAGT+TGG - 42608:7864-7883 None:intergenic 45.0%
ACATTGCGATATGCAGGAGA+TGG + 42608:8276-8295 MS.gene054185:intron 45.0%
ACTTACTCCAAGAAGCAGCA+TGG - 42608:5633-5652 None:intergenic 45.0%
AGGGGCCGAAATTTAAACGT+TGG + 42608:7991-8010 MS.gene054185:intron 45.0%
ATACCTTGACCCCTAAATGC+TGG - 42608:7176-7195 None:intergenic 45.0%
ATAGGTGTGGTCATTGGATG+TGG + 42608:7069-7088 MS.gene054185:intron 45.0%
ATCTTGTGGCTTAGGGTCTT+TGG + 42608:7777-7796 MS.gene054185:intron 45.0%
ATTGCGATATGCAGGAGATG+GGG + 42608:8278-8297 MS.gene054185:intron 45.0%
CAGCAAATCGCATGCAAATC+TGG + 42608:8677-8696 MS.gene054185:CDS 45.0%
CATTGCGATATGCAGGAGAT+GGG + 42608:8277-8296 MS.gene054185:intron 45.0%
CTGGGTTTCAACCAGCATTT+AGG + 42608:7162-7181 MS.gene054185:CDS 45.0%
CTTGCATGAACTCGAGACAA+AGG + 42608:6061-6080 MS.gene054185:intron 45.0%
GGGTTTCAACCAGCATTTAG+GGG + 42608:7164-7183 MS.gene054185:CDS 45.0%
GTTCGTGTCTCTCATACACT+TGG + 42608:6722-6741 MS.gene054185:CDS 45.0%
GTTGAGTATACCTAGACTCG+TGG + 42608:6373-6392 MS.gene054185:intron 45.0%
TAGGAACCAAGAGCAATCAC+AGG - 42608:5271-5290 None:intergenic 45.0%
TCGAGTTCATGCAAGACACA+TGG - 42608:6056-6075 None:intergenic 45.0%
TCTTGTGGCTTAGGGTCTTT+GGG + 42608:7778-7797 MS.gene054185:intron 45.0%
TGGATGTGGATGGCAAGTTA+TGG + 42608:7083-7102 MS.gene054185:CDS 45.0%
TGGTCCAAAGAAGGATGGAA+TGG + 42608:5118-5137 MS.gene054185:CDS 45.0%
TGTGGATGGCAAGTTATGGT+TGG + 42608:7087-7106 MS.gene054185:CDS 45.0%
TTGTAAGACCAACTGGACCA+AGG + 42608:7853-7872 MS.gene054185:CDS 45.0%
! CTAAATGCTGGTTGAAACCC+AGG - 42608:7164-7183 None:intergenic 45.0%
! GTCATTGGTTGGTCCAAAGA+AGG + 42608:5109-5128 MS.gene054185:CDS 45.0%
! TTGGTTGGTCCAAAGAAGGA+TGG + 42608:5113-5132 MS.gene054185:CDS 45.0%
! TTTCCTCGGTTAGGTTAGCT+CGG + 42608:7941-7960 MS.gene054185:intron 45.0%
!! AAAATTCATTATAATTTAAT+AGG + 42608:8380-8399 MS.gene054185:intron 5.0%
!! TCTAAAAAAAAAAAAATATT+AGG + 42608:7460-7479 MS.gene054185:intron 5.0%
!!! TTTTAAAAAAAATAAAAAGA+GGG - 42608:8210-8229 None:intergenic 5.0%
!!! TTTTTAAAAAAAATAAAAAG+AGG - 42608:8211-8230 None:intergenic 5.0%
CAACCAGCATTTAGGGGTCA+AGG + 42608:7170-7189 MS.gene054185:CDS 50.0%
CTTTGCTTGGCAATCGACCA+AGG + 42608:7738-7757 MS.gene054185:intron 50.0%
GTGTGGTCATTGGATGTGGA+TGG + 42608:7073-7092 MS.gene054185:CDS 50.0%
TAACCGAGCTAACCTAACCG+AGG - 42608:7947-7966 None:intergenic 50.0%
TAAGACCAACTGGACCAAGG+AGG + 42608:7856-7875 MS.gene054185:CDS 50.0%
TCGTACGATTCCACGAGTCT+AGG - 42608:6386-6405 None:intergenic 50.0%
! TGGAACTCCATGCTGCTTCT+TGG + 42608:5623-5642 MS.gene054185:CDS 50.0%
GTGGCTTAGGGTCTTTGGGC+AGG + 42608:7782-7801 MS.gene054185:intron 60.0%


Chromosome Type Strat End Strand Name
42608 gene 5058 8714 5058 ID=MS.gene054185
42608 mRNA 5058 8714 5058 ID=MS.gene054185.t1;Parent=MS.gene054185
42608 exon 5058 5299 5058 ID=MS.gene054185.t1.exon1;Parent=MS.gene054185.t1
42608 CDS 5058 5299 5058 ID=cds.MS.gene054185.t1;Parent=MS.gene054185.t1
42608 exon 5607 5663 5607 ID=MS.gene054185.t1.exon2;Parent=MS.gene054185.t1
42608 CDS 5607 5663 5607 ID=cds.MS.gene054185.t1;Parent=MS.gene054185.t1
42608 exon 6721 6959 6721 ID=MS.gene054185.t1.exon3;Parent=MS.gene054185.t1
42608 CDS 6721 6959 6721 ID=cds.MS.gene054185.t1;Parent=MS.gene054185.t1
42608 exon 7073 7191 7073 ID=MS.gene054185.t1.exon4;Parent=MS.gene054185.t1
42608 CDS 7073 7191 7073 ID=cds.MS.gene054185.t1;Parent=MS.gene054185.t1
42608 exon 7791 7877 7791 ID=MS.gene054185.t1.exon5;Parent=MS.gene054185.t1
42608 CDS 7791 7877 7791 ID=cds.MS.gene054185.t1;Parent=MS.gene054185.t1
42608 exon 8667 8714 8667 ID=MS.gene054185.t1.exon6;Parent=MS.gene054185.t1
42608 CDS 8667 8714 8667 ID=cds.MS.gene054185.t1;Parent=MS.gene054185.t1
Gene Sequence

>MS.gene054185

ATGGCAAGTAATATCTCAGGATGGATATTTTCTATTGCATTGGTAATTTATGTCATTGGTTGGTCCAAAGAAGGATGGAATGGATTGTCTTGGATGGCATTTAGGGAATTATGGGAATTTACAATGCTAAGTCTTGGTTCATCTGGAATGATCTGGTTAGAACAGTGGTATGGTGTTTGCATTATTCTTCTTGCTGGTCACCTTGATAATCCTGTGATTGCTCTTGGTTCCTATTCAATTTGGTAAGTATAAGTTAATAAATAATTTTCGTTCACTTATATTTACACTTTAACTTTCCAATGTTACTTTTGTATTGAATTTTGTTATATTTTGTGTAAAATATTTTACATTGTCAACAAATCATAATAAATCATATTTGTTTTAAGAATTAATTAAAATTAAAGTCAAAGATTTTTAATGATTTGACAATTATGATTGGTTGACCGTGTCAATAATCTCTACACCGACGGTGTACATGTGAATTAAATTCTAATTTTAAAGTTTCTTGGTTTCTTGGTTTTCTTCATATATTTACTTTTATGCTTTTAGTCTTAATGTTCAGGGTTGGAACTCCATGCTGCTTCTTGGAGTAAGTACAGCATTAAGGTGAGTGACTATAAGTTAAACTAATTAGGAAAATACTAACAATTACATTTAGGGCATTGTTTAAGCAATTTAAAGGAGTAATTTTTACATAAAAAGTTGTGTAATTTTAACTTTTCTATTTGTTTGATTTGCATTTTTTTCAAGATGAAGTTTCTTAAACAATAATCTTAGGGCACTTTTTAAAGTAATGGTATTTATTCTTGTTAGCATAATCATTTTTATTCTTGTATAGCATAATCACTTTTTAAGCAATTTCAAAGTGCTGGTATTTATTCTTGTTAGCATAATCATTTTTATTAATATGTAACAAATGTGCCTTAGAATTTATTGTCAATCTAAGTACTTGGTTGGTGATAGTCTGTAAACATATATTGTAAACACTCATTGAGCCATGTGTCTTGCATGAACTCGAGACAAAGGTTGTCAAAATCGAGAGTTGAAGTGAATTCGTTTTGCTGATATGAAATTGGCTCGTAGTCTCATACGAGTTTACCTCATATTGAAATAACATTAAAACCAATATATACATGACATATATATTTATATAATATTGTAAACATGTCAATATTCAAATTTCCAACTCAGTTATAAAATAAGAAAATGGGCATGAACAAAATCAAAGGAAATTAACTGAATGTAACAAGTTAGATGAGAGAAAAAGATAAAAAATAAAAAAATAAAAAAATAAAAATCCTTCTATAATTTTTTAGTTGAGTATACCTAGACTCGTGGAATCGTACGATGCCATGTTAACTCGTGATTTTAACAACCTTACTTGAGACTCAATTCATCTATAATTTTATTCTTTTAAAGTGACATTAATGATCATTTTACATTATTTTTAAGGAATTTGAATTTCATCCCCTCATGCCATAAGACAAAAACTCTTGCCACTGAATTTACACATCATAATCATAGACACCTACACTTTTTTATCAATAAATAAATAAATTTTAAAATTAAATTAAATCTAAGATGTTGATTTTGATTATATAGTTTTCCATATAATTTTTTCAATGTTCAAACTGACTATATATTGATTCTAATGTCTTGCAAGTGTTCGTGTCTCTCATACACTTGGAATGTCGCATCCAAGAGCATCCAAATACTCATTCTTGGTGGCAATGTCTCAGTCTCTTCTCATTGGAATCATTTTCATGACTGTTATTTTCTTGAGTAAACAAGAATTTGCCATCATCTTTACCAAAAGTGTGGATATGATACATGCTGCTAGTGAATTAGCATACTTTCTTGGTATAACCATGGTTCTCAACAGTGTTTCACAAACTATATCAGGTAATTACTTTGCTTGGTTGACTAGAAAATGTTTAATTTATAACATATAGTCTCATGAGTGCTTGTGATATTACACTATTATTTACATTTTAATTTTGAGGAGGTTTTTATAGGTGTGGTCATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAACTTGGCATGTTATTACATTATTGGACTCCCAATTGCAATTTACCTGGGTTTCAACCAGCATTTAGGGGTCAAGGTATAACACTAAACTCTTGCTTTAGAAAATAATGTATCCTCCCTAAATCATGAATGAAGTTTCTTATATATTTACCTATATTAAGTGTTTATGTTAACATAATTCATCTTTATAAAATGGACTTCGAAGATGAAGAGTGTTACTCTTTATAAACTATTTTTAGGTTTTACCTCTATTCAATATGGAACTTGAATTTTTCCAATACTTACACTCTATAATGTGTGTGTGTGTGTGTGTCTATATATATATATATATATATATGGCCTCTTCTAAAAAAAAAAAAATATTAGGTCTTATCTCTTTTCAATATATGGATTTGGTTTTTTCCATTAAAAATTATTGGGGTCTTGAGTTAGAACGAGTTAAATTTTTGAAAAGAAAAAAAATTGTTACACAGCATATTTTTACCTCACTTTACTTCACTAAAAGTGGTTTCTGGTTTATCTTGTCACCACTTATCTATTAAAAATTGTTGCGTATATTTTGAATATTTACATTTTTTTGGTGCAAAGAATATTTACATTTAAATTTGTCATTGTAACATTACTTTGCTTGGCAATCGACCAAGGAATTAATGTTCAACTTATCTTGTGGCTTAGGGTCTTTGGGCAGGCACGATATGCGCAAGTATTCTTCAGATTATAGTCCTCACAATCATTATTTGTAAGACCAACTGGACCAAGGAGGTAATTATGTTTGATTATTTTAATTAAAAAATTACAATTTTTAGCATCTAATTAAGTCTATGTTTTCCTCGGTTAGGTTAGCTCGGTTATTAGGGATATAATATAATATATGCAGGGGCCGAAATTTAAACGTTGGACACCCTACTTGTTCACCATAAAAGATGAATTTCTAGTCGCTAGACTACTTAACCAAAAAAAAATGTGGTATATGCCTTGTTAATTATTCTAGCAATGAGTGATTTGTATCCTATGATACCAAGATCATCTTTTAGACCTTGTATTATTTTATTTTTCATAAACCATCAATTTAGTCTTTGAATTATAAGTATCCCTCTTTTTATTTTTTTTAAAAAAAAAACATTATAATTGTCATCCTGATTATAACTCAATTGATATGAACATTGCGATATGCAGGAGATGGGGTTCAAACACCGTATTTTTCAATTATTCACTTTGAGCGCTGAATTTCGAACCATTATGTTACTTGACCAAAAAAACTAAAAAAATTCATTATAATTTAATAGGAACTAAACTTGAAAGCATATGATTTTATAGGGATTAAAAATATATTTTACTTTAGTAAATGTAAATATTTTAGTTTCCTACAACTTGTTTTAATTTAAATCTCTAATATTTGTTAACGTTGATTTTATTCTCTATAATATCTGCATCATAAGAGAACTACTTTCAAATATAAACTATTTGAGTGATATGATAAATCAAATCACTCAAGTTTTGCAGTGCTAAATGATAGTATTTCATAGTGTAATTTATGGAATATGATTGCAGGTAGAGCAAACAGCAAATCGCATGCAAATCTGGATCTCTAACAAGTAA

Protein sequence

>MS.gene054185.t1

MASNISGWIFSIALVIYVIGWSKEGWNGLSWMAFRELWEFTMLSLGSSGMIWLEQWYGVCIILLAGHLDNPVIALGSYSICLNVQGWNSMLLLGVSTALSVRVSHTLGMSHPRASKYSFLVAMSQSLLIGIIFMTVIFLSKQEFAIIFTKSVDMIHAASELAYFLGITMVLNSVSQTISGVVIGCGWQVMVGYINLACYYIIGLPIAIYLGFNQHLGVKGLWAGTICASILQIIVLTIIICKTNWTKEVEQTANRMQIWISNK