Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69934.t1 | XP_013468988.1 | 99.4 | 162 | 1 | 0 | 1 | 162 | 1 | 162 | 3.50E-87 | 330.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69934.t1 | Q9SQZ9 | 79.0 | 162 | 33 | 1 | 1 | 162 | 1 | 161 | 4.8e-69 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69934.t1 | I3SPG3 | 99.4 | 162 | 1 | 0 | 1 | 162 | 1 | 162 | 2.5e-87 | 330.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050439 | MS.gene69934 | 0.822577 | 2.20E-53 | -1.69E-46 |
| MS.gene059774 | MS.gene69934 | 0.801787 | 7.64E-49 | -1.69E-46 |
| MS.gene060697 | MS.gene69934 | 0.805141 | 1.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69934.t1 | MTR_1g080960 | 99.383 | 162 | 1 | 0 | 1 | 162 | 1 | 162 | 1.05e-118 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69934.t1 | AT3G04780 | 79.012 | 162 | 33 | 1 | 1 | 162 | 1 | 161 | 1.03e-91 | 265 |
| MS.gene69934.t1 | AT2G25950 | 33.077 | 130 | 77 | 6 | 17 | 139 | 20 | 146 | 5.29e-11 | 58.9 |
| MS.gene69934.t1 | AT2G25950 | 33.077 | 130 | 77 | 6 | 17 | 139 | 20 | 146 | 5.40e-11 | 58.9 |
Find 33 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGAGCTTCACTGTCTT+GGG | 0.289539 | 1.4:+65869523 | None:intergenic |
| ATAGTATTACCTTCATCTTC+AGG | 0.337204 | 1.4:+65870859 | None:intergenic |
| ACAAGGAACACATGGGATTC+AGG | 0.346409 | 1.4:-65869498 | MS.gene69934:intron |
| CTACAGCTTTGTGTTTCCTT+TGG | 0.361137 | 1.4:-65868922 | MS.gene69934:intron |
| GGAAAAGAGCTTCACTGTCT+TGG | 0.377000 | 1.4:+65869522 | None:intergenic |
| CGAACCTGTTTAATAGCGTT+GGG | 0.387848 | 1.4:+65871090 | None:intergenic |
| GCGAGCGAGCGAGCAATGTC+TGG | 0.395374 | 1.4:-65871328 | None:intergenic |
| GTTCAGAAGATTATGCTGAT+TGG | 0.398671 | 1.4:-65868997 | MS.gene69934:CDS |
| ATCTCTTAGACTTCATAGAT+TGG | 0.400371 | 1.4:-65871155 | MS.gene69934:CDS |
| GAATCCCATGTGTTCCTTGT+TGG | 0.401137 | 1.4:+65869501 | None:intergenic |
| CAGCTTGACAATATTTATTG+AGG | 0.448896 | 1.4:-65869049 | MS.gene69934:CDS |
| TCTCCCCAACGCTATTAAAC+AGG | 0.449659 | 1.4:-65871094 | MS.gene69934:intron |
| TATTCTCTTATAGGGAAAAC+CGG | 0.450332 | 1.4:-65869209 | MS.gene69934:intron |
| CCGAACCTGTTTAATAGCGT+TGG | 0.450637 | 1.4:+65871089 | None:intergenic |
| TTGACATACTTTAAAAGTAC+CGG | 0.471646 | 1.4:+65869190 | None:intergenic |
| ATGTCAAATTTCAAAATGTC+CGG | 0.480329 | 1.4:-65869174 | MS.gene69934:CDS |
| ACCCTTGTGAACAGCGGTGG+TGG | 0.483236 | 1.4:+65871297 | None:intergenic |
| CTTTATTCAGTTGCTTTCAA+AGG | 0.501742 | 1.4:-65870883 | MS.gene69934:CDS |
| AGTTTAATAACTTGAGTGAA+AGG | 0.521408 | 1.4:+65870904 | None:intergenic |
| TTAGACTTCATAGATTGGAC+TGG | 0.525278 | 1.4:-65871150 | MS.gene69934:CDS |
| TAGGGTTATAGAGAAGATGA+TGG | 0.528724 | 1.4:-65870973 | MS.gene69934:CDS |
| AGCCACCACCGCTGTTCACA+AGG | 0.536518 | 1.4:-65871299 | MS.gene69934:CDS |
| AAAATTAATGTATCACTTGG+TGG | 0.546577 | 1.4:+65869359 | None:intergenic |
| GACAAAATTAATGTATCACT+TGG | 0.564267 | 1.4:+65869356 | None:intergenic |
| TTCAAAGGTCCTGAAGATGA+AGG | 0.580336 | 1.4:-65870868 | MS.gene69934:intron |
| TTTGTCTCCTGAAAACCTCA+AGG | 0.583750 | 1.4:-65869339 | MS.gene69934:intron |
| TAGGTATTTCTTCACACCAA+AGG | 0.585203 | 1.4:+65868906 | None:intergenic |
| AAAAGAGCTTCACTGTCTTG+GGG | 0.597831 | 1.4:+65869524 | None:intergenic |
| TACTTGACCCTTGTGAACAG+CGG | 0.613002 | 1.4:+65871291 | None:intergenic |
| TCAAATTTCAAAATGTCCGG+AGG | 0.653931 | 1.4:-65869171 | MS.gene69934:intron |
| TTGACCCTTGTGAACAGCGG+TGG | 0.656088 | 1.4:+65871294 | None:intergenic |
| GAACCTGTTTAATAGCGTTG+GGG | 0.669005 | 1.4:+65871091 | None:intergenic |
| GCCACCACCGCTGTTCACAA+GGG | 0.677895 | 1.4:-65871298 | MS.gene69934:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATAAATAATGTCT+TGG | + | chr1.4:65870239-65870258 | None:intergenic | 10.0% |
| !! | TAACACAATAAAAAAAAAAA+GGG | + | chr1.4:65869187-65869206 | None:intergenic | 10.0% |
| !! | TAGAAAATTTAAATAAATTG+AGG | + | chr1.4:65870378-65870397 | None:intergenic | 10.0% |
| !!! | ATATTTTTTTCTATCATATT+TGG | - | chr1.4:65870971-65870990 | MS.gene69934:CDS | 10.0% |
| !!! | ATTTAATTTATTCTCTTATA+GGG | - | chr1.4:65871013-65871032 | MS.gene69934:intron | 10.0% |
| !!! | ATTTTTATTTTTTGAAAACT+CGG | - | chr1.4:65869721-65869740 | MS.gene69934:intron | 10.0% |
| !!! | TATTTAATTTATTCTCTTAT+AGG | - | chr1.4:65871012-65871031 | MS.gene69934:intron | 10.0% |
| !!! | TTTCTTTTATTAATTTAATC+AGG | - | chr1.4:65869049-65869068 | MS.gene69934:CDS | 10.0% |
| !!! | TTTTTTACTAATGAAAATTA+GGG | - | chr1.4:65869239-65869258 | MS.gene69934:intron | 10.0% |
| !!! | TTTTTTTACTAATGAAAATT+AGG | - | chr1.4:65869238-65869257 | MS.gene69934:intron | 10.0% |
| !! | AAAACCATTAAAATAAATTG+AGG | + | chr1.4:65870271-65870290 | None:intergenic | 15.0% |
| !! | GTAACACAATAAAAAAAAAA+AGG | + | chr1.4:65869188-65869207 | None:intergenic | 15.0% |
| !! | TTATATGATATGAATGAATA+AGG | + | chr1.4:65869402-65869421 | None:intergenic | 15.0% |
| !!! | ATAAAAAAAAAAAGGGTTTT+TGG | + | chr1.4:65869180-65869199 | None:intergenic | 15.0% |
| !! | AAAGAAAAAGATTAGTAACT+AGG | + | chr1.4:65869036-65869055 | None:intergenic | 20.0% |
| !! | CTTTATAAAAGTAGGAAATA+AGG | + | chr1.4:65871096-65871115 | None:intergenic | 20.0% |
| !! | GCTATTAAAACAAACAAATT+TGG | + | chr1.4:65870774-65870793 | None:intergenic | 20.0% |
| !!! | ATCGACTATTTATATTTTCA+TGG | - | chr1.4:65870123-65870142 | MS.gene69934:intron | 20.0% |
| !!! | GATACCTCAATTTATTTTAA+TGG | - | chr1.4:65870264-65870283 | MS.gene69934:intron | 20.0% |
| !!! | GATTATGATGATGAATAATA+GGG | + | chr1.4:65868974-65868993 | None:intergenic | 20.0% |
| !!! | GTTTTCTAATTCAGTTTTAA+GGG | - | chr1.4:65868996-65869015 | MS.gene69934:CDS | 20.0% |
| !!! | TGTTTTCTAATTCAGTTTTA+AGG | - | chr1.4:65868995-65869014 | MS.gene69934:CDS | 20.0% |
| !!! | TTTAAGACTATATACCATTA+TGG | + | chr1.4:65870471-65870490 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTCAAACATTAG+CGG | - | chr1.4:65869614-65869633 | MS.gene69934:intron | 20.0% |
| ! | AAAATTAATGTATCACTTGG+TGG | + | chr1.4:65870874-65870893 | None:intergenic | 25.0% |
| ! | ACATGTATAGATACCAAAAT+GGG | + | chr1.4:65869691-65869710 | None:intergenic | 25.0% |
| ! | AGTTTAATAACTTGAGTGAA+AGG | + | chr1.4:65869329-65869348 | None:intergenic | 25.0% |
| ! | ATGTCAAATTTCAAAATGTC+CGG | - | chr1.4:65871056-65871075 | MS.gene69934:intron | 25.0% |
| ! | CTCATTATAAAATTCTTCCA+AGG | + | chr1.4:65870552-65870571 | None:intergenic | 25.0% |
| ! | CTTACATGTACAATCATATT+GGG | + | chr1.4:65869479-65869498 | None:intergenic | 25.0% |
| ! | GACAAAATTAATGTATCACT+TGG | + | chr1.4:65870877-65870896 | None:intergenic | 25.0% |
| ! | TACATGTATAGATACCAAAA+TGG | + | chr1.4:65869692-65869711 | None:intergenic | 25.0% |
| ! | TATTGAATGTAATCACATGT+TGG | + | chr1.4:65869585-65869604 | None:intergenic | 25.0% |
| ! | TCTTACATGTACAATCATAT+TGG | + | chr1.4:65869480-65869499 | None:intergenic | 25.0% |
| ! | TTACATGTACAATCATATTG+GGG | + | chr1.4:65869478-65869497 | None:intergenic | 25.0% |
| ! | TTTGTTGACATGATTGTAAT+CGG | - | chr1.4:65870663-65870682 | MS.gene69934:intron | 25.0% |
| !! | AGAATTTTATAATGAGATGG+AGG | - | chr1.4:65870556-65870575 | MS.gene69934:intron | 25.0% |
| !! | CGATTATGATGATGAATAAT+AGG | + | chr1.4:65868975-65868994 | None:intergenic | 25.0% |
| !! | GATTCGAAGTATTCAAATAT+AGG | + | chr1.4:65870004-65870023 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTATAATGAGA+TGG | - | chr1.4:65870553-65870572 | MS.gene69934:intron | 25.0% |
| !! | TAGCTAATCATTTTCTTAAG+TGG | - | chr1.4:65870517-65870536 | MS.gene69934:intron | 25.0% |
| !! | TTGACATACTTTAAAAGTAC+CGG | + | chr1.4:65871043-65871062 | None:intergenic | 25.0% |
| AACATCGCATTAATTTAGAG+TGG | + | chr1.4:65870440-65870459 | None:intergenic | 30.0% | |
| AATTGGATGAGAAAAATGGA+AGG | + | chr1.4:65871121-65871140 | None:intergenic | 30.0% | |
| AGTTAGTTCCTGTATTTGTT+AGG | - | chr1.4:65870058-65870077 | MS.gene69934:intron | 30.0% | |
| ATAGTATTACCTTCATCTTC+AGG | + | chr1.4:65869374-65869393 | None:intergenic | 30.0% | |
| ATCTCTTAGACTTCATAGAT+TGG | - | chr1.4:65869075-65869094 | MS.gene69934:intron | 30.0% | |
| ATGTATAGATACCAAAATGG+GGG | + | chr1.4:65869689-65869708 | None:intergenic | 30.0% | |
| CAGCTTGACAATATTTATTG+AGG | - | chr1.4:65871181-65871200 | MS.gene69934:intron | 30.0% | |
| CATGTATAGATACCAAAATG+GGG | + | chr1.4:65869690-65869709 | None:intergenic | 30.0% | |
| CTCAATAAATATTGTCAAGC+TGG | + | chr1.4:65871183-65871202 | None:intergenic | 30.0% | |
| GAGTTTAACCTAACAAATAC+AGG | + | chr1.4:65870069-65870088 | None:intergenic | 30.0% | |
| TAAGGAAAATAACATACCTC+CGG | + | chr1.4:65871078-65871097 | None:intergenic | 30.0% | |
| TACATGTACAATCATATTGG+GGG | + | chr1.4:65869477-65869496 | None:intergenic | 30.0% | |
| TATAGTAACATGTTACGCTT+TGG | + | chr1.4:65870100-65870119 | None:intergenic | 30.0% | |
| TATTCTCTTATAGGGAAAAC+CGG | - | chr1.4:65871021-65871040 | MS.gene69934:intron | 30.0% | |
| TGCTAACAAGATGTAAAGTT+TGG | + | chr1.4:65869964-65869983 | None:intergenic | 30.0% | |
| TGGTGAAGATTGTATTTGTA+GGG | + | chr1.4:65870611-65870630 | None:intergenic | 30.0% | |
| TTGGTGAAGATTGTATTTGT+AGG | + | chr1.4:65870612-65870631 | None:intergenic | 30.0% | |
| ! | AAAAAAGTGCAGTAGCAAAT+TGG | + | chr1.4:65870631-65870650 | None:intergenic | 30.0% |
| ! | CTTTATTCAGTTGCTTTCAA+AGG | - | chr1.4:65869347-65869366 | MS.gene69934:CDS | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr1.4:65870284-65870303 | MS.gene69934:intron | 30.0% |
| !! | TTCCATTTTTCTCATCCAAT+TGG | - | chr1.4:65871120-65871139 | MS.gene69934:CDS | 30.0% |
| ACATGTACAATCATATTGGG+GGG | + | chr1.4:65869476-65869495 | None:intergenic | 35.0% | |
| ACTCTGACACATTTGATTGA+AGG | - | chr1.4:65869518-65869537 | MS.gene69934:CDS | 35.0% | |
| CACCAATTGGATGAGAAAAA+TGG | + | chr1.4:65871125-65871144 | None:intergenic | 35.0% | |
| CTTAAGACTGACTAATTCGA+GGG | - | chr1.4:65869752-65869771 | MS.gene69934:intron | 35.0% | |
| GATGTTCTACTCTTCCATAA+TGG | - | chr1.4:65870454-65870473 | MS.gene69934:intron | 35.0% | |
| GTTCAGAAGATTATGCTGAT+TGG | - | chr1.4:65871233-65871252 | MS.gene69934:intron | 35.0% | |
| TAGGGTTATAGAGAAGATGA+TGG | - | chr1.4:65869257-65869276 | MS.gene69934:intron | 35.0% | |
| TCAAATTTCAAAATGTCCGG+AGG | - | chr1.4:65871059-65871078 | MS.gene69934:intron | 35.0% | |
| TCTTAAGACTGACTAATTCG+AGG | - | chr1.4:65869751-65869770 | MS.gene69934:intron | 35.0% | |
| TGGTATCTATACATGTACAG+TGG | - | chr1.4:65869695-65869714 | MS.gene69934:intron | 35.0% | |
| TGTATAGATACCAAAATGGG+GGG | + | chr1.4:65869688-65869707 | None:intergenic | 35.0% | |
| TGTGGGAATCAGGAAAAAAT+AGG | + | chr1.4:65869450-65869469 | None:intergenic | 35.0% | |
| TTAAGACTGACTAATTCGAG+GGG | - | chr1.4:65869753-65869772 | MS.gene69934:intron | 35.0% | |
| TTAGACTTCATAGATTGGAC+TGG | - | chr1.4:65869080-65869099 | MS.gene69934:intron | 35.0% | |
| ! | CATTTTTCTCATCCAATTGG+TGG | - | chr1.4:65871123-65871142 | MS.gene69934:CDS | 35.0% |
| ! | TAAGCCTTATCCAACTAAGT+GGG | + | chr1.4:65870334-65870353 | None:intergenic | 35.0% |
| ! | TTTTCCAACAAGGAACACAT+GGG | - | chr1.4:65870725-65870744 | MS.gene69934:intron | 35.0% |
| !! | GGAAGGCACTTTATAAAAGT+AGG | + | chr1.4:65871104-65871123 | None:intergenic | 35.0% |
| !! | TGAGCATAGTTAATGGACTT+GGG | + | chr1.4:65870938-65870957 | None:intergenic | 35.0% |
| !! | TTGAGCATAGTTAATGGACT+TGG | + | chr1.4:65870939-65870958 | None:intergenic | 35.0% |
| AAAAGAGCTTCACTGTCTTG+GGG | + | chr1.4:65870709-65870728 | None:intergenic | 40.0% | |
| ATCAAAGATGAGACCTTGAG+AGG | - | chr1.4:65869866-65869885 | MS.gene69934:intron | 40.0% | |
| ATGTAATCACATGTTGGTGC+TGG | + | chr1.4:65869579-65869598 | None:intergenic | 40.0% | |
| CCAACGCTATTAAACAGGTT+CGG | - | chr1.4:65869141-65869160 | MS.gene69934:intron | 40.0% | |
| CGAACCTGTTTAATAGCGTT+GGG | + | chr1.4:65869143-65869162 | None:intergenic | 40.0% | |
| CTTGTGCCCTGTGATTAAAT+CGG | - | chr1.4:65870795-65870814 | MS.gene69934:intron | 40.0% | |
| GAAAAGAGCTTCACTGTCTT+GGG | + | chr1.4:65870710-65870729 | None:intergenic | 40.0% | |
| GAACCTGTTTAATAGCGTTG+GGG | + | chr1.4:65869142-65869161 | None:intergenic | 40.0% | |
| GAGTGGTTAAAAGTAGCAGT+AGG | + | chr1.4:65870423-65870442 | None:intergenic | 40.0% | |
| GATTCAGGTATAGCTTGGTT+TGG | - | chr1.4:65870747-65870766 | MS.gene69934:intron | 40.0% | |
| GCGACATTGAGCATAGTTAA+TGG | + | chr1.4:65870945-65870964 | None:intergenic | 40.0% | |
| GTAGGTGTAGTGAAGTAGTT+AGG | + | chr1.4:65870405-65870424 | None:intergenic | 40.0% | |
| GTCTCATCTTTGATTATCCC+CGG | + | chr1.4:65869860-65869879 | None:intergenic | 40.0% | |
| TGGACTTGGGAGAAAAGTTA+TGG | + | chr1.4:65870925-65870944 | None:intergenic | 40.0% | |
| TTAAGTGGTGTTCATCACCT+TGG | - | chr1.4:65870532-65870551 | MS.gene69934:intron | 40.0% | |
| TTCAAAGGTCCTGAAGATGA+AGG | - | chr1.4:65869362-65869381 | MS.gene69934:CDS | 40.0% | |
| TTTGTCTCCTGAAAACCTCA+AGG | - | chr1.4:65870891-65870910 | MS.gene69934:CDS | 40.0% | |
| ! | AAGCCTTATCCAACTAAGTG+GGG | + | chr1.4:65870333-65870352 | None:intergenic | 40.0% |
| ! | AGTGAAGCTCTTTTCCAACA+AGG | - | chr1.4:65870715-65870734 | MS.gene69934:intron | 40.0% |
| ! | CAGAGTGTTAAGTGTACATG+TGG | + | chr1.4:65869504-65869523 | None:intergenic | 40.0% |
| ! | CAGCAACCGATTTAATCACA+GGG | + | chr1.4:65870804-65870823 | None:intergenic | 40.0% |
| ! | CTAAGCCTTATCCAACTAAG+TGG | + | chr1.4:65870335-65870354 | None:intergenic | 40.0% |
| ! | CTACAGCTTTGTGTTTCCTT+TGG | - | chr1.4:65871308-65871327 | MS.gene69934:CDS | 40.0% |
| ! | CTTTTCCAACAAGGAACACA+TGG | - | chr1.4:65870724-65870743 | MS.gene69934:intron | 40.0% |
| ! | TCAGCAACCGATTTAATCAC+AGG | + | chr1.4:65870805-65870824 | None:intergenic | 40.0% |
| ! | TTTCTCATCCAATTGGTGGT+GGG | - | chr1.4:65871127-65871146 | MS.gene69934:CDS | 40.0% |
| ! | TTTTCTCATCCAATTGGTGG+TGG | - | chr1.4:65871126-65871145 | MS.gene69934:CDS | 40.0% |
| !! | TGCTTTGCTCTGGCTTTAAA+CGG | + | chr1.4:65869807-65869826 | None:intergenic | 40.0% |
| !! | TGTATTTGTAGGGTGCTGTA+AGG | + | chr1.4:65870601-65870620 | None:intergenic | 40.0% |
| !!! | CGGAGTCAATGTTGTTTTCT+AGG | - | chr1.4:65870683-65870702 | MS.gene69934:intron | 40.0% |
| AATCATATTGGGGGGAGTTG+TGG | + | chr1.4:65869468-65869487 | None:intergenic | 45.0% | |
| ACAAGGAACACATGGGATTC+AGG | - | chr1.4:65870732-65870751 | MS.gene69934:intron | 45.0% | |
| ATCATATTGGGGGGAGTTGT+GGG | + | chr1.4:65869467-65869486 | None:intergenic | 45.0% | |
| CAACCCCACTTAGTTGGATA+AGG | - | chr1.4:65870327-65870346 | MS.gene69934:intron | 45.0% | |
| CATGGGATTCAGGTATAGCT+TGG | - | chr1.4:65870742-65870761 | MS.gene69934:intron | 45.0% | |
| CATGTGTCAAACACCTGAAC+TGG | + | chr1.4:65869549-65869568 | None:intergenic | 45.0% | |
| CCGAACCTGTTTAATAGCGT+TGG | + | chr1.4:65869144-65869163 | None:intergenic | 45.0% | |
| CTTATCCAACTAAGTGGGGT+TGG | + | chr1.4:65870329-65870348 | None:intergenic | 45.0% | |
| GAATCCCATGTGTTCCTTGT+TGG | + | chr1.4:65870732-65870751 | None:intergenic | 45.0% | |
| GATTTCAATGACTACCCTCC+AGG | + | chr1.4:65869929-65869948 | None:intergenic | 45.0% | |
| GGAAAAGAGCTTCACTGTCT+TGG | + | chr1.4:65870711-65870730 | None:intergenic | 45.0% | |
| GTCACAGCAGAACTGATAGA+TGG | + | chr1.4:65871277-65871296 | None:intergenic | 45.0% | |
| GTCCATACAATGCTTTGCTC+TGG | + | chr1.4:65869817-65869836 | None:intergenic | 45.0% | |
| GTTATGGAGCAACTACCTTG+AGG | + | chr1.4:65870909-65870928 | None:intergenic | 45.0% | |
| TACTTGACCCTTGTGAACAG+CGG | + | chr1.4:65868942-65868961 | None:intergenic | 45.0% | |
| TCTCCCCAACGCTATTAAAC+AGG | - | chr1.4:65869136-65869155 | MS.gene69934:intron | 45.0% | |
| ! | GCAACTACCTTGAGGTTTTC+AGG | + | chr1.4:65870901-65870920 | None:intergenic | 45.0% |
| ! | TTATCCCCGGTTGCCAATTT+TGG | + | chr1.4:65869847-65869866 | None:intergenic | 45.0% |
| !! | AGCCAGAGCAAAGCATTGTA+TGG | - | chr1.4:65869812-65869831 | MS.gene69934:intron | 45.0% |
| !! | ATGGACTAGCCCACCAAAAT+TGG | - | chr1.4:65869831-65869850 | MS.gene69934:intron | 45.0% |
| !! | GCTTTGCTCTGGCTTTAAAC+GGG | + | chr1.4:65869806-65869825 | None:intergenic | 45.0% |
| AAGTTGCTCCCACCACCAAT+TGG | + | chr1.4:65871138-65871157 | None:intergenic | 50.0% | |
| AGCCCACCAAAATTGGCAAC+CGG | - | chr1.4:65869838-65869857 | MS.gene69934:intron | 50.0% | |
| TACCCTCCAGGAACCCATTT+GGG | + | chr1.4:65869917-65869936 | None:intergenic | 50.0% | |
| TGTAGCCAACCCCACTTAGT+TGG | - | chr1.4:65870321-65870340 | MS.gene69934:intron | 50.0% | |
| ! | AACCCAAATGGGTTCCTGGA+GGG | - | chr1.4:65869912-65869931 | MS.gene69934:intron | 50.0% |
| ! | ATTGAAGGCGTGTCCAGTTC+AGG | - | chr1.4:65869533-65869552 | MS.gene69934:intron | 50.0% |
| ! | GAATGCGAATCCCCCCATTT+TGG | - | chr1.4:65869675-65869694 | MS.gene69934:intron | 50.0% |
| !! | GAACCCATTTGGGTTGGCTT+GGG | + | chr1.4:65869907-65869926 | None:intergenic | 50.0% |
| AATCCCACCATCCACTTGCG+GGG | - | chr1.4:65869779-65869798 | MS.gene69934:intron | 55.0% | |
| AGGTCCCAAGCCAACCCAAA+TGG | - | chr1.4:65869900-65869919 | MS.gene69934:intron | 55.0% | |
| CAATCCCACCATCCACTTGC+GGG | - | chr1.4:65869778-65869797 | MS.gene69934:intron | 55.0% | |
| CCAATCCCACCATCCACTTG+CGG | - | chr1.4:65869777-65869796 | MS.gene69934:intron | 55.0% | |
| CCCACCAAAATTGGCAACCG+GGG | - | chr1.4:65869840-65869859 | MS.gene69934:intron | 55.0% | |
| CTACCCTCCAGGAACCCATT+TGG | + | chr1.4:65869918-65869937 | None:intergenic | 55.0% | |
| CTCCAGGAACCCATTTGGGT+TGG | + | chr1.4:65869913-65869932 | None:intergenic | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | + | chr1.4:65869882-65869901 | None:intergenic | 55.0% | |
| GCCCACCAAAATTGGCAACC+GGG | - | chr1.4:65869839-65869858 | MS.gene69934:intron | 55.0% | |
| GGTCCCAAGCCAACCCAAAT+GGG | - | chr1.4:65869901-65869920 | MS.gene69934:intron | 55.0% | |
| TTGACCCTTGTGAACAGCGG+TGG | + | chr1.4:65868939-65868958 | None:intergenic | 55.0% | |
| ! | AGCCAACCCAAATGGGTTCC+TGG | - | chr1.4:65869908-65869927 | MS.gene69934:intron | 55.0% |
| ! | CAACCCAAATGGGTTCCTGG+AGG | - | chr1.4:65869911-65869930 | MS.gene69934:intron | 55.0% |
| ! | CTTGAGAGGAGCACACTCCA+AGG | - | chr1.4:65869880-65869899 | MS.gene69934:intron | 55.0% |
| ! | TCCCCGGTTGCCAATTTTGG+TGG | + | chr1.4:65869844-65869863 | None:intergenic | 55.0% |
| !! | CCCCGGTTGCCAATTTTGGT+GGG | + | chr1.4:65869843-65869862 | None:intergenic | 55.0% |
| !! | GGAACCCATTTGGGTTGGCT+TGG | + | chr1.4:65869908-65869927 | None:intergenic | 55.0% |
| !! | TTTGGGTTGGCTTGGGACCT+TGG | + | chr1.4:65869900-65869919 | None:intergenic | 55.0% |
| ACCCTTGTGAACAGCGGTGG+TGG | + | chr1.4:65868936-65868955 | None:intergenic | 60.0% | |
| AGCCACCACCGCTGTTCACA+AGG | - | chr1.4:65868931-65868950 | MS.gene69934:intron | 60.0% | |
| ATCCCACCATCCACTTGCGG+GGG | - | chr1.4:65869780-65869799 | MS.gene69934:intron | 60.0% | |
| GCCACCACCGCTGTTCACAA+GGG | - | chr1.4:65868932-65868951 | MS.gene69934:intron | 60.0% | |
| TGGGGGGAGTTGTGGGAATC+AGG | + | chr1.4:65869460-65869479 | None:intergenic | 60.0% | |
| TTTAAACGGGCCCCCGCAAG+TGG | + | chr1.4:65869793-65869812 | None:intergenic | 60.0% | |
| !! | CCGCAAGTGGATGGTGGGAT+TGG | + | chr1.4:65869780-65869799 | None:intergenic | 60.0% |
| AACGGGCCCCCGCAAGTGGA+TGG | + | chr1.4:65869789-65869808 | None:intergenic | 70.0% | |
| GGCCCCCGCAAGTGGATGGT+GGG | + | chr1.4:65869785-65869804 | None:intergenic | 70.0% | |
| GGGCCCCCGCAAGTGGATGG+TGG | + | chr1.4:65869786-65869805 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 65868917 | 65871335 | 65868917 | ID=MS.gene69934 |
| chr1.4 | mRNA | 65868917 | 65871335 | 65868917 | ID=MS.gene69934.t1;Parent=MS.gene69934 |
| chr1.4 | exon | 65871294 | 65871335 | 65871294 | ID=MS.gene69934.t1.exon1;Parent=MS.gene69934.t1 |
| chr1.4 | CDS | 65871294 | 65871335 | 65871294 | ID=cds.MS.gene69934.t1;Parent=MS.gene69934.t1 |
| chr1.4 | exon | 65871095 | 65871181 | 65871095 | ID=MS.gene69934.t1.exon2;Parent=MS.gene69934.t1 |
| chr1.4 | CDS | 65871095 | 65871181 | 65871095 | ID=cds.MS.gene69934.t1;Parent=MS.gene69934.t1 |
| chr1.4 | exon | 65870869 | 65870992 | 65870869 | ID=MS.gene69934.t1.exon3;Parent=MS.gene69934.t1 |
| chr1.4 | CDS | 65870869 | 65870992 | 65870869 | ID=cds.MS.gene69934.t1;Parent=MS.gene69934.t1 |
| chr1.4 | exon | 65869499 | 65869547 | 65869499 | ID=MS.gene69934.t1.exon4;Parent=MS.gene69934.t1 |
| chr1.4 | CDS | 65869499 | 65869547 | 65869499 | ID=cds.MS.gene69934.t1;Parent=MS.gene69934.t1 |
| chr1.4 | exon | 65869340 | 65869397 | 65869340 | ID=MS.gene69934.t1.exon5;Parent=MS.gene69934.t1 |
| chr1.4 | CDS | 65869340 | 65869397 | 65869340 | ID=cds.MS.gene69934.t1;Parent=MS.gene69934.t1 |
| chr1.4 | exon | 65869172 | 65869218 | 65869172 | ID=MS.gene69934.t1.exon6;Parent=MS.gene69934.t1 |
| chr1.4 | CDS | 65869172 | 65869218 | 65869172 | ID=cds.MS.gene69934.t1;Parent=MS.gene69934.t1 |
| chr1.4 | exon | 65868991 | 65869068 | 65868991 | ID=MS.gene69934.t1.exon7;Parent=MS.gene69934.t1 |
| chr1.4 | CDS | 65868991 | 65869068 | 65868991 | ID=cds.MS.gene69934.t1;Parent=MS.gene69934.t1 |
| chr1.4 | exon | 65868917 | 65868938 | 65868917 | ID=MS.gene69934.t1.exon8;Parent=MS.gene69934.t1 |
| chr1.4 | CDS | 65868917 | 65868938 | 65868917 | ID=cds.MS.gene69934.t1;Parent=MS.gene69934.t1 |
| Gene Sequence |
| Protein sequence |
