AlfalfaGEDB | MS.gene70079

M. sativa cultivar XinJiangDaYe / MS.gene70079

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70079.t1	RHN58856.1	89	282	30	1	1	282	1	281	4.30E-39	172.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70079.t1	F4HTV4	59.0	144	53	2	7	150	259	396	3.7e-07	57.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70079.t1	A0A396HZT3	89.0	282	30	1	1	282	1	281	3.1e-39	172.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052590	MS.gene70079	0.805107	1.57E-49	-1.69E-46
MS.gene053356	MS.gene70079	0.801131	1.04E-48	-1.69E-46
MS.gene054102	MS.gene70079	0.813053	3.11E-51	-1.69E-46
MS.gene054108	MS.gene70079	0.816971	4.20E-52	-1.69E-46
MS.gene054183	MS.gene70079	0.802629	5.12E-49	-1.69E-46
MS.gene055217	MS.gene70079	0.803941	2.74E-49	-1.69E-46
MS.gene057476	MS.gene70079	0.803684	3.10E-49	-1.69E-46
MS.gene057833	MS.gene70079	0.827591	1.44E-54	-1.69E-46
MS.gene057841	MS.gene70079	0.811366	7.26E-51	-1.69E-46
MS.gene057843	MS.gene70079	0.851052	1.14E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70079.t1	MTR_4g016810	80.294	340	66	1	1	340	271	609	0.0	531
MS.gene70079.t1	MTR_4g016810	26.638	229	132	4	13	240	435	628	3.16e-12	67.8
MS.gene70079.t1	MTR_4g016850	79.179	341	68	3	3	340	224	564	1.41e-175	513
MS.gene70079.t1	MTR_4g016850	28.481	316	188	7	9	321	384	664	9.86e-23	99.8
MS.gene70079.t1	MTR_4g016850	30.435	345	193	13	34	340	109	444	2.54e-13	71.6
MS.gene70079.t1	MTR_4g016850	26.984	252	121	8	13	226	604	830	3.38e-11	65.1
MS.gene70079.t1	MTR_4g016910	76.023	342	80	2	1	341	1	341	1.60e-170	491
MS.gene70079.t1	MTR_4g016910	31.231	333	192	11	10	340	138	435	6.28e-28	115
MS.gene70079.t1	MTR_4g016910	30.392	306	148	13	15	271	311	600	2.38e-18	86.7
MS.gene70079.t1	MTR_4g016910	27.966	236	135	7	13	226	380	602	1.46e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70079.t1	AT1G74190	41.209	364	183	5	2	340	238	595	1.99e-72	242
MS.gene70079.t1	AT1G74190	27.446	368	221	10	6	340	509	863	5.99e-22	97.4
MS.gene70079.t1	AT1G74190	26.718	393	211	11	4	340	128	499	1.71e-16	81.3
MS.gene70079.t1	AT1G74190	27.731	238	139	8	6	227	649	869	1.24e-11	66.2
MS.gene70079.t1	AT1G74170	39.452	365	190	4	1	340	251	609	9.59e-70	235
MS.gene70079.t1	AT1G74170	27.586	406	215	10	2	340	470	863	4.63e-21	95.1
MS.gene70079.t1	AT1G74170	27.394	376	227	11	4	340	145	513	4.67e-15	77.0
MS.gene70079.t1	AT1G74170	25.938	320	192	6	26	340	66	345	3.85e-12	67.8
MS.gene70079.t1	AT1G74170	39.452	365	190	4	1	340	319	677	1.08e-69	235
MS.gene70079.t1	AT1G74170	27.586	406	215	10	2	340	538	931	3.89e-21	95.1

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Find 68 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCAGAGTTCTTGATCT+TGG	0.379370	4.2:-85231137	MS.gene70079:CDS
AAGTTCAAATAGGTAACATT+AGG	0.426243	4.2:+85230681	None:intergenic
AATATATAGAACCTGGAGAT+TGG	0.427494	4.2:+85230992	None:intergenic
AATTAACTCATTCCCCTCTG+TGG	0.654276	4.2:+85230545	None:intergenic
AATTTGAAGAACGCGCATGT+AGG	0.571690	4.2:+85230260	None:intergenic
ACCTGAACAATTGGCCACAG+AGG	0.645989	4.2:-85230559	MS.gene70079:CDS
ACTATGCAATTTAAAGGATT+TGG	0.314462	4.2:-85231225	MS.gene70079:CDS
AGCCAAGATCAAGAACTCTG+AGG	0.695649	4.2:+85231135	None:intergenic
AGCTAATCATTCCAATCTCC+AGG	0.434806	4.2:-85231003	MS.gene70079:CDS
AGGAGATAGTTAATTATGAC+AGG	0.546756	4.2:-85231248	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATATAGAACCTGGAGAT+TGG	+	chr4.2:85230468-85230487	None:intergenic	30.0%
ATAGATTTCCAGACATAAGA+AGG	+	chr4.2:85231150-85231169	None:intergenic	30.0%
ATAGCCAATAACTTAATCAC+AGG	-	chr4.2:85231082-85231101	MS.gene70079:CDS	30.0%
ATGTCTGGAAATCTATTAGA+AGG	-	chr4.2:85231154-85231173	MS.gene70079:CDS	30.0%
GAAAACATCTTGATTGAACT+AGG	+	chr4.2:85231115-85231134	None:intergenic	30.0%
GATGAAAGAACTTCAAATCT+TGG	-	chr4.2:85230844-85230863	MS.gene70079:CDS	30.0%
GATTATCTATCAACCAACTT+GGG	+	chr4.2:85230682-85230701	None:intergenic	30.0%
GGAAATATACCTTCATCAAT+TGG	-	chr4.2:85230818-85230837	MS.gene70079:CDS	30.0%
GTGATGAAATATATAGAACC+TGG	+	chr4.2:85230475-85230494	None:intergenic	30.0%
TCGAAATTGTAACCTAAACA+TGG	-	chr4.2:85230568-85230587	MS.gene70079:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	85230224	85231255	85230224	ID=MS.gene70079
chr4.2	mRNA	85230224	85231255	85230224	ID=MS.gene70079.t1;Parent=MS.gene70079
chr4.2	exon	85230224	85231255	85230224	ID=MS.gene70079.t1.exon1;Parent=MS.gene70079.t1
chr4.2	CDS	85230224	85231255	85230224	ID=cds.MS.gene70079.t1;Parent=MS.gene70079.t1

Gene Sequence

>MS.gene70079

ATGACAGGACTATGCAATTTAAAGGATTTGGTAGAACTGGATATCAGCAGTAACATGTTTGGTGCTAAACTTCCTGAATGTTTAAGTAACTTAACAAACCTCAGAGTTCTTGATCTTGGCTATAATCTGTTCAGTGGAAATTTTCCATCATTCACTACCAATCTCACATCTCTGGCATACTTATCCTTCTATGACAATTACTTGCAAGGATCATTTTCATTGAGCACTTTAGCTAATCATTCCAATCTCCAGGTTCTATATATTTCATCACAAAGCATTGGAGCACAAGTTGAAACTGAAAGAACAAAGTGGTTTCCTAAATTTCAATTGAAATCACTCATTCTTCGAAATTGTAACCTAAACATGGACAAAGGAAGTGTCATTCCTACTTTTCTTTCATATCAATATAATTTGGTAGTGATGGACCTCTCCAGAAACAATTTAGTTGGTTCATTCCCAAGTTGGTTGATAGATAATCATAACATGAAATATTTGGATATATCAAACAACAATTTGAGTGGTTTGCTTCCAGAAGATATTGGTATATTACTTCCTAATGTTACCTATTTGAACTTTTCATGGAATAGCATTGAAGGAAATATACCTTCATCAATTGGTAAGATGAAAGAACTTCAAATCTTGGACTTCTCTCATAATCATTTCTCAGGTGAGTTACCTGAACAATTGGCCACAGAGGGGAATGAGTTAATTTACTTGAAGGTCTCCAACAACTTTCTACGTGGGAATATTCCTAAATTCAATTCAGTGAATATGTTTGGGTTATTGCTCAATAATAACAACTTTAGTGGAACACTTGAAGATGTACTGGGAATTAAAACACAATTATCAATTCTATCCATAGCCAATAACTTAATCACAGGAAAAATTCCTAGTTCAATCAAGATGTTTTCTGGAATGGAAGTCCTTCTTATGTCTGGAAATCTATTAGAAGGTGAGATCCCTATTGAGATTTCCTACATGCGCGTTCTTCAAATTTTGGATCTTTCTCAAAACAAGTTGTTAAACTTCTAA

Protein sequence

>MS.gene70079.t1

MTGLCNLKDLVELDISSNMFGAKLPECLSNLTNLRVLDLGYNLFSGNFPSFTTNLTSLAYLSFYDNYLQGSFSLSTLANHSNLQVLYISSQSIGAQVETERTKWFPKFQLKSLILRNCNLNMDKGSVIPTFLSYQYNLVVMDLSRNNLVGSFPSWLIDNHNMKYLDISNNNLSGLLPEDIGILLPNVTYLNFSWNSIEGNIPSSIGKMKELQILDFSHNHFSGELPEQLATEGNELIYLKVSNNFLRGNIPKFNSVNMFGLLLNNNNFSGTLEDVLGIKTQLSILSIANNLITGKIPSSIKMFSGMEVLLMSGNLLEGEIPIEISYMRVLQILDLSQNKLLNF