AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70151


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70151.t1 MTR_8g095110 98.357 487 8 0 1 487 89 575 0.0 999
MS.gene70151.t1 MTR_8g095140 78.033 478 105 0 1 478 100 577 0.0 787
MS.gene70151.t1 MTR_8g095150 74.322 479 110 3 1 478 87 553 0.0 712
MS.gene70151.t1 MTR_8g095130 71.311 488 99 5 24 487 4 474 0.0 678
MS.gene70151.t1 MTR_2g005730 51.670 509 216 5 1 480 90 597 2.11e-177 511
MS.gene70151.t1 MTR_8g095090 47.217 521 236 7 1 487 1 516 1.81e-154 449
MS.gene70151.t1 MTR_8g095090 47.217 521 236 7 1 487 84 599 2.43e-153 449
MS.gene70151.t1 MTR_4g088500 42.447 523 257 7 1 481 96 616 3.09e-135 404
MS.gene70151.t1 MTR_8g097210 37.262 526 280 9 1 478 1 524 1.57e-108 332
MS.gene70151.t1 MTR_2g017740 38.586 495 264 8 1 478 95 566 7.10e-108 332
MS.gene70151.t1 MTR_8g097210 37.452 526 279 9 1 478 95 618 1.84e-107 332
MS.gene70151.t1 MTR_3g084930 35.338 532 287 9 1 478 91 619 6.93e-98 308
MS.gene70151.t1 MTR_8g105700 36.576 514 249 10 1 477 80 553 1.11e-95 300
MS.gene70151.t1 MTR_2g005730 47.742 310 137 3 1 286 90 398 3.46e-92 287
MS.gene70151.t1 MTR_7g116350 36.891 431 189 11 65 481 443 804 6.45e-69 235
MS.gene70151.t1 MTR_4g027860 38.462 351 175 8 147 478 78 406 2.08e-68 224
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70151.t1 AT4G24290 49.320 515 226 5 1 484 89 599 5.15e-171 495
MS.gene70151.t1 AT4G24290 49.320 515 226 5 1 484 89 599 5.15e-171 495
MS.gene70151.t1 AT1G28380 43.893 524 244 11 1 481 92 608 5.54e-129 388
MS.gene70151.t1 AT1G29690 38.911 496 254 12 1 478 97 561 6.83e-100 311
MS.gene70151.t1 AT1G14780 34.953 535 284 16 1 476 89 618 1.75e-89 286
MS.gene70151.t1 AT4G24290 42.972 249 115 3 1 223 89 336 2.78e-60 202

Find 128 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCATTTCTGTGCTTCATT+TGG 0.229180 4.1:-7531699 MS.gene70151:CDS
CTGCGCTTCTCCAAAGTTAT+TGG 0.250969 4.1:-7529825 MS.gene70151:CDS
CTTTCCCTCTTTCGGAATAA+AGG 0.265281 4.1:+7529722 None:intergenic
TGACCCCTCTTTCCCTCTTT+CGG 0.276599 4.1:+7529714 None:intergenic
TGTGCTTCATTTGGGTTATC+TGG 0.301827 4.1:-7531690 MS.gene70151:CDS
GTCATTTCTGTGCTTCATTT+GGG 0.313321 4.1:-7531698 MS.gene70151:CDS
AGCTCCATTTCACTTTCTTA+TGG 0.318511 4.1:+7529949 None:intergenic
CCAGTATCCTGGAGTGTCTT+CGG 0.320923 4.1:+7529575 None:intergenic
GCAAAGCTTTCTGCACATAA+TGG 0.328407 4.1:-7529540 MS.gene70151:CDS
ATGGTCACATCGCCTGGTTT+TGG 0.329583 4.1:+7529690 None:intergenic
CTCCTACAAGACGCATTTCA+TGG 0.331088 4.1:+7531733 None:intergenic
CCGAAGACACTCCAGGATAC+TGG 0.331869 4.1:-7529575 MS.gene70151:CDS
TGGAGAAGCGCAGCCGTAAA+AGG 0.346124 4.1:+7529835 None:intergenic
CTGGCTAAGATTTAGTATCT+TGG 0.347933 4.1:-7530292 MS.gene70151:CDS
TGTAATCTCAGGCCAATTAC+TGG 0.365361 4.1:+7530098 None:intergenic
GACGTATCTCGCTAAGTATA+GGG 0.372940 4.1:+7530346 None:intergenic
GTTGGTAATAGACCAGTAAT+TGG 0.382891 4.1:-7530110 MS.gene70151:CDS
CAGTATCCTGGAGTGTCTTC+GGG 0.387249 4.1:+7529576 None:intergenic
TTGTTGAATATCCGTGGAAA+TGG 0.394567 4.1:-7530817 MS.gene70151:CDS
ATTAAGTCTCTTGCTTATGA+TGG 0.395072 4.1:-7531642 MS.gene70151:CDS
ATCATGGGACCCTGAGGCCT+TGG 0.403203 4.1:-7531538 MS.gene70151:CDS
TCTAACCTTGCCAAGGCCTC+AGG 0.403832 4.1:+7531528 None:intergenic
AATTGGCCTGAGATTACAAT+TGG 0.406239 4.1:-7530093 MS.gene70151:CDS
AACCATGAAATGCGTCTTGT+AGG 0.407081 4.1:-7531735 MS.gene70151:CDS
AGACGTATCTCGCTAAGTAT+AGG 0.407597 4.1:+7530345 None:intergenic
TGGCTAAGATTTAGTATCTT+GGG 0.407867 4.1:-7530291 MS.gene70151:CDS
CAAAGCTTTCTGCACATAAT+GGG 0.418467 4.1:-7529539 MS.gene70151:CDS
AATTGATGGAGGTCCTCAAT+TGG 0.418554 4.1:+7530399 None:intergenic
CAACTGGGCTCCTGTGACAA+TGG 0.423001 4.1:+7529878 None:intergenic
TCGGAACTCATGTGATAGTC+GGG 0.426259 4.1:-7531275 MS.gene70151:CDS
AGATACGTCTTGGTTCTTAC+TGG 0.428387 4.1:-7530332 MS.gene70151:CDS
CCAGGATACTGGGTTGTGTC+TGG 0.429175 4.1:-7529564 MS.gene70151:CDS
GCTGCTGAAACCGCCAAGAT+TGG 0.440338 4.1:+7529764 None:intergenic
TCCCTTCCAATTGTAATCTC+AGG 0.441693 4.1:+7530087 None:intergenic
AACAGCTAGCACGAAGTTCA+TGG 0.443770 4.1:-7531160 MS.gene70151:CDS
ATTGTATTTATGCAAAGCTT+AGG 0.443813 4.1:+7530267 None:intergenic
AGTCTCTTGCTTATGATGGT+TGG 0.445593 4.1:-7531638 MS.gene70151:CDS
CTTGTAGGAGACACTGCATC+TGG 0.453976 4.1:-7531720 MS.gene70151:CDS
AATGTATCATAGTGAATGGT+TGG 0.460632 4.1:-7530899 MS.gene70151:CDS
CCCACTCGGGTGGTTTCTGA+AGG 0.465186 4.1:+7529796 None:intergenic
GAACCGATGGTCACATCGCC+TGG 0.470037 4.1:+7529684 None:intergenic
ACAAGGTTCATAGAACGTTT+CGG 0.473580 4.1:-7531294 MS.gene70151:intron
CAGCTTCTTTGACATGATCA+TGG 0.476704 4.1:+7531568 None:intergenic
TTGTACCGCACCAGTTGAAT+CGG 0.479326 4.1:-7529913 MS.gene70151:CDS
CGGTTTCAGCAGCAAGTCCA+CGG 0.479542 4.1:-7529754 MS.gene70151:CDS
TGGGATCAATCCTCCAATCT+TGG 0.481908 4.1:-7529777 MS.gene70151:CDS
TGCGTTGTCTGCAAGTGGTA+AGG 0.485168 4.1:+7530010 None:intergenic
ACTTCCATAAGAAAGTGAAA+TGG 0.489566 4.1:-7529953 MS.gene70151:CDS
AGATGCATCGATATGACATC+AGG 0.491452 4.1:+7530859 None:intergenic
CTTAGCCTTTATTCCGAAAG+AGG 0.493443 4.1:-7529727 MS.gene70151:CDS
GGTTTCAGCAGCAAGTCCAC+GGG 0.495177 4.1:-7529753 MS.gene70151:CDS
TGTGATAGTCGGGGTGAGCA+TGG 0.496550 4.1:-7531265 MS.gene70151:CDS
TCTGCAAGTGGTAAGGACTT+TGG 0.499740 4.1:+7530017 None:intergenic
AAGGGTGGCACCAATAACTT+TGG 0.502575 4.1:+7529815 None:intergenic
TCGATATGACATCAGGTTGT+GGG 0.503036 4.1:+7530866 None:intergenic
AAACAATGTATCATAGTGAA+TGG 0.504555 4.1:-7530903 MS.gene70151:CDS
CCAGACACAACCCAGTATCC+TGG 0.505046 4.1:+7529564 None:intergenic
GCTGAAACCGCCAAGATTGG+AGG 0.507368 4.1:+7529767 None:intergenic
CGAAGACACTCCAGGATACT+GGG 0.516395 4.1:-7529574 MS.gene70151:CDS
GACAGTCTTTCCATTGTCAC+AGG 0.517079 4.1:-7529888 MS.gene70151:CDS
ATCGATATGACATCAGGTTG+TGG 0.517095 4.1:+7530865 None:intergenic
AGAGGGCCCGAAGACACTCC+AGG 0.518785 4.1:-7529582 MS.gene70151:CDS
AAGAAGCTGTGCCATCATCA+TGG 0.519325 4.1:-7531554 MS.gene70151:CDS
CGGGGTGAGCATGGGAGGGA+AGG 0.522195 4.1:-7531256 MS.gene70151:CDS
GCCTCAGGGTCCCATGATGA+TGG 0.524754 4.1:+7531543 None:intergenic
CTAGGTGTACGCACTGGTGC+AGG 0.525023 4.1:+7529639 None:intergenic
AGTCAGATGCTGAAGGTGAA+TGG 0.525240 4.1:+7530046 None:intergenic
ATAGTCGGGGTGAGCATGGG+AGG 0.528201 4.1:-7531261 MS.gene70151:CDS
TTATTCCGAAAGAGGGAAAG+AGG 0.533936 4.1:-7529719 MS.gene70151:CDS
GTTTCAGCTACCGAGACAAT+GGG 0.535357 4.1:-7530370 MS.gene70151:CDS
GGCCTGAGATTACAATTGGA+AGG 0.538497 4.1:-7530089 MS.gene70151:CDS
TTCGGAACTCATGTGATAGT+CGG 0.541320 4.1:-7531276 MS.gene70151:CDS
CAAGATACTAAATCTTAGCC+AGG 0.545013 4.1:+7530293 None:intergenic
GTGATAGTCGGGGTGAGCAT+GGG 0.545065 4.1:-7531264 MS.gene70151:CDS
ATACTTAGCGAGATACGTCT+TGG 0.546671 4.1:-7530342 MS.gene70151:CDS
GATCAATCCTCCAATCTTGG+CGG 0.547130 4.1:-7529774 MS.gene70151:CDS
AGTTTCAGCTACCGAGACAA+TGG 0.553319 4.1:-7530371 MS.gene70151:CDS
TTAGCCTTTATTCCGAAAGA+GGG 0.554550 4.1:-7529726 MS.gene70151:CDS
GGAAGCATCAAATGAATACC+TGG 0.555372 4.1:-7530311 MS.gene70151:CDS
TTCTGATGAAAGGTAGATGT+TGG 0.558473 4.1:-7530128 MS.gene70151:intron
ACCTAGGCTTCAAAAGTATG+TGG 0.559009 4.1:-7529622 MS.gene70151:CDS
GCATTTGCGTTGTCTGCAAG+TGG 0.559908 4.1:+7530005 None:intergenic
AGACTGTCATCCGATTCAAC+TGG 0.561552 4.1:+7529903 None:intergenic
TCAAAAGTATGTGGACATAA+CGG 0.561886 4.1:-7529613 MS.gene70151:CDS
GCCTGAGATTACAATTGGAA+GGG 0.566489 4.1:-7530088 MS.gene70151:CDS
AGAAGCTGTGCCATCATCAT+GGG 0.568471 4.1:-7531553 MS.gene70151:CDS
TGGAAGGGAGAAGAAGCAAC+CGG 0.568916 4.1:-7530073 MS.gene70151:CDS
ATGGTACATAAAAGGAAGGG+TGG 0.569803 4.1:-7530934 MS.gene70151:CDS
GCTGAAGGTGAATGGCCAAC+CGG 0.573510 4.1:+7530054 None:intergenic
TGATGGAGGTCCTCAATTGG+AGG 0.577604 4.1:+7530402 None:intergenic
CTAACCTTGCCAAGGCCTCA+GGG 0.580190 4.1:+7531529 None:intergenic
AGTATAGGGGCCCATTGTCT+CGG 0.583044 4.1:+7530360 None:intergenic
AACAGACAAACCTCCAATTG+AGG 0.583441 4.1:-7530412 MS.gene70151:intron
CTCGGGTGGTTTCTGAAGGG+TGG 0.584252 4.1:+7529800 None:intergenic
TATTCCGAAAGAGGGAAAGA+GGG 0.588418 4.1:-7529718 MS.gene70151:CDS
TTTATGGTACATAAAAGGAA+GGG 0.590990 4.1:-7530937 MS.gene70151:CDS
CAAATCAATACTTACAGCGA+AGG 0.591791 4.1:+7530767 None:intergenic
GAAGGTAGAGATTTATAGCA+TGG 0.594301 4.1:+7530785 None:intergenic
GTTGAATTAGAAAACTATCA+TGG 0.594595 4.1:-7531597 MS.gene70151:CDS
GGCTCATAAATCCATTTCCA+CGG 0.594804 4.1:+7530806 None:intergenic
TCTAAGTTCTAACCTTGCCA+AGG 0.597051 4.1:+7531521 None:intergenic
TGGTCGATGTATCAAAGACT+TGG 0.598827 4.1:-7531670 MS.gene70151:CDS
GCCATCATCATGGGACCCTG+AGG 0.604238 4.1:-7531544 MS.gene70151:CDS
ATTGGAGGATTGATCCCACT+CGG 0.605159 4.1:+7529782 None:intergenic
CCTTCAGAAACCACCCGAGT+GGG 0.608119 4.1:-7529796 MS.gene70151:CDS
ACGTATCTCGCTAAGTATAG+GGG 0.610475 4.1:+7530347 None:intergenic
AAGAGGGGTCATCCAAAACC+AGG 0.612754 4.1:-7529702 MS.gene70151:CDS
TGAAGCCTAGGTGTACGCAC+TGG 0.617438 4.1:+7529633 None:intergenic
TAGTCGGGGTGAGCATGGGA+GGG 0.618685 4.1:-7531260 MS.gene70151:CDS
AGGGAGAAGAAGCAACCGGT+TGG 0.618702 4.1:-7530069 MS.gene70151:CDS
AAACCAGGCGATGTGACCAT+CGG 0.618841 4.1:-7529687 MS.gene70151:CDS
CCACTCGGGTGGTTTCTGAA+GGG 0.624339 4.1:+7529797 None:intergenic
GAGGATTGATCCCACTCGGG+TGG 0.625847 4.1:+7529786 None:intergenic
AGAATATGTAGTAGAACCGA+TGG 0.629598 4.1:+7529671 None:intergenic
GTAAAGAAGTCAGATGCTGA+AGG 0.633934 4.1:+7530039 None:intergenic
GTCATCCGATTCAACTGGTG+CGG 0.637991 4.1:+7529908 None:intergenic
CCCTTCAGAAACCACCCGAG+TGG 0.639822 4.1:-7529797 MS.gene70151:CDS
GACATAACGGAAATGATGAG+AGG 0.645131 4.1:-7529600 MS.gene70151:CDS
GTTTCAGCAGCAAGTCCACG+GGG 0.645716 4.1:-7529752 MS.gene70151:CDS
TCAATAGTGAATACTTAACA+AGG 0.648499 4.1:+7529505 None:intergenic
GGGACCCTGAGGCCTTGGCA+AGG 0.651590 4.1:-7531533 MS.gene70151:intron
CTGCACCAGTGCGTACACCT+AGG 0.659104 4.1:-7529638 MS.gene70151:CDS
ACATAACGGAAATGATGAGA+GGG 0.659425 4.1:-7529599 MS.gene70151:CDS
CGGAACTCATGTGATAGTCG+GGG 0.661883 4.1:-7531274 MS.gene70151:CDS
TTGGAGGATTGATCCCACTC+GGG 0.664867 4.1:+7529783 None:intergenic
TTCAACAAAAGTGATGTCAG+AGG 0.667680 4.1:+7530832 None:intergenic
ATTCCGAAAGAGGGAAAGAG+GGG 0.674087 4.1:-7529717 MS.gene70151:CDS
TTTCAGCAGCAAGTCCACGG+GGG 0.749568 4.1:-7529751 MS.gene70151:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAAAAAAAATATTTCAT+TGG - chr4.1:7530246-7530265 MS.gene70151:intron 10.0%
!! TTAAAAAAAATATTTCATTG+GGG - chr4.1:7530248-7530267 MS.gene70151:intron 10.0%
!!! CAATGAAATATTTTTTTTAA+TGG + chr4.1:7530248-7530267 None:intergenic 10.0%
!! AATTTCATTTCAAAATAAGA+TGG + chr4.1:7530196-7530215 None:intergenic 15.0%
!! TATATCACTTTCTTAAAATT+AGG + chr4.1:7530534-7530553 None:intergenic 15.0%
!! ATCTAAATATTCCAAAGATT+TGG - chr4.1:7529784-7529803 MS.gene70151:CDS 20.0%
!! GGAATATTTAGATAGAAATT+TGG + chr4.1:7529777-7529796 None:intergenic 20.0%
!! TCTGTTATAAACATTATACA+AGG - chr4.1:7530673-7530692 MS.gene70151:intron 20.0%
!!! AATTTATACTGATTCATACA+AGG - chr4.1:7529909-7529928 MS.gene70151:CDS 20.0%
!!! ATCTTTTTATGGTACATAAA+AGG - chr4.1:7530278-7530297 MS.gene70151:CDS 20.0%
! AAACAATGTATCATAGTGAA+TGG - chr4.1:7530317-7530336 MS.gene70151:CDS 25.0%
! AACATTATACAAGGATAGAT+CGG - chr4.1:7530682-7530701 MS.gene70151:intron 25.0%
! ACCATTAACTATCATTCAAA+GGG - chr4.1:7530589-7530608 MS.gene70151:intron 25.0%
! AGACTTAAGTAACAAAAAAG+AGG - chr4.1:7530114-7530133 MS.gene70151:CDS 25.0%
! ATTGTATTTATGCAAAGCTT+AGG + chr4.1:7530956-7530975 None:intergenic 25.0%
! GTTGAATTAGAAAACTATCA+TGG - chr4.1:7529623-7529642 MS.gene70151:CDS 25.0%
! TACCATTAACTATCATTCAA+AGG - chr4.1:7530588-7530607 MS.gene70151:intron 25.0%
! TCAATAGTGAATACTTAACA+AGG + chr4.1:7531718-7531737 None:intergenic 25.0%
! TCATTTCAAAATAAGATGGT+CGG + chr4.1:7530192-7530211 None:intergenic 25.0%
! TTTATGGTACATAAAAGGAA+GGG - chr4.1:7530283-7530302 MS.gene70151:CDS 25.0%
!! AACACACCACATTTTTATTA+TGG - chr4.1:7530138-7530157 MS.gene70151:intron 25.0%
!! TAGTATCCAAAAACTTTTGA+AGG - chr4.1:7530036-7530055 MS.gene70151:CDS 25.0%
!! TTTTATGGTACATAAAAGGA+AGG - chr4.1:7530282-7530301 MS.gene70151:CDS 25.0%
!!! AAAAGTTTTTGGATACTAGT+TGG + chr4.1:7530034-7530053 None:intergenic 25.0%
!!! AATTTCTAGTTATAGAGCAA+TGG + chr4.1:7529814-7529833 None:intergenic 25.0%
!!! TTCAATTCTGAGATGTTTAA+TGG + chr4.1:7530721-7530740 None:intergenic 25.0%
!!! TTTTTTCATCTTCTGATGAA+AGG - chr4.1:7531082-7531101 MS.gene70151:intron 25.0%
AACTACGAATCTCTGAATAT+TGG - chr4.1:7531053-7531072 MS.gene70151:intron 30.0%
AATAACACTATGCAGTTCAA+GGG + chr4.1:7529726-7529745 None:intergenic 30.0%
AATGTATCATAGTGAATGGT+TGG - chr4.1:7530321-7530340 MS.gene70151:CDS 30.0%
ACATTATACAAGGATAGATC+GGG - chr4.1:7530683-7530702 MS.gene70151:intron 30.0%
ACTTCCATAAGAAAGTGAAA+TGG - chr4.1:7531267-7531286 MS.gene70151:CDS 30.0%
ATGCACATTAAAAATGCAAG+AGG + chr4.1:7530993-7531012 None:intergenic 30.0%
ATTAAGTCTCTTGCTTATGA+TGG - chr4.1:7529578-7529597 MS.gene70151:CDS 30.0%
GCAGATTATGTCAAGAAAAA+TGG - chr4.1:7530563-7530582 MS.gene70151:intron 30.0%
GGAATGCCATAATAAAAATG+TGG + chr4.1:7530147-7530166 None:intergenic 30.0%
TAATAACACTATGCAGTTCA+AGG + chr4.1:7529727-7529746 None:intergenic 30.0%
TCCCTTTGAATGATAGTTAA+TGG + chr4.1:7530593-7530612 None:intergenic 30.0%
TGAGATGTTTAATGGAATAC+TGG + chr4.1:7530713-7530732 None:intergenic 30.0%
TGCACATTAAAAATGCAAGA+GGG + chr4.1:7530992-7531011 None:intergenic 30.0%
TGGCTAAGATTTAGTATCTT+GGG - chr4.1:7530929-7530948 MS.gene70151:CDS 30.0%
! CTGTTTCCTTCAAAAGTTTT+TGG + chr4.1:7530045-7530064 None:intergenic 30.0%
! TCAAAAGTATGTGGACATAA+CGG - chr4.1:7531607-7531626 MS.gene70151:CDS 30.0%
!!! AAAAGAAGTGTCTCCTTTTA+CGG - chr4.1:7531372-7531391 MS.gene70151:intron 30.0%
AAAATAAGATGGTCGGTCAA+AGG + chr4.1:7530185-7530204 None:intergenic 35.0%
ACAAGGTTCATAGAACGTTT+CGG - chr4.1:7529926-7529945 MS.gene70151:CDS 35.0%
AGAATATGTAGTAGAACCGA+TGG + chr4.1:7531552-7531571 None:intergenic 35.0%
AGCTCCATTTCACTTTCTTA+TGG + chr4.1:7531274-7531293 None:intergenic 35.0%
CAAAGCTTTCTGCACATAAT+GGG - chr4.1:7531681-7531700 MS.gene70151:CDS 35.0%
CAAAGGTAGTATAGTGCTAA+AGG + chr4.1:7530168-7530187 None:intergenic 35.0%
CAAATCAATACTTACAGCGA+AGG + chr4.1:7530456-7530475 None:intergenic 35.0%
CAAGATACTAAATCTTAGCC+AGG + chr4.1:7530930-7530949 None:intergenic 35.0%
CACAGTTCAATTTGCATCAT+AGG + chr4.1:7529850-7529869 None:intergenic 35.0%
CTGGCTAAGATTTAGTATCT+TGG - chr4.1:7530928-7530947 MS.gene70151:CDS 35.0%
GAAACTCGAAAAATTGATGG+AGG + chr4.1:7530835-7530854 None:intergenic 35.0%
GAAGGTAGAGATTTATAGCA+TGG + chr4.1:7530438-7530457 None:intergenic 35.0%
GCACATTAAAAATGCAAGAG+GGG + chr4.1:7530991-7531010 None:intergenic 35.0%
GCTGAAACTCGAAAAATTGA+TGG + chr4.1:7530838-7530857 None:intergenic 35.0%
GTCATTTCTGTGCTTCATTT+GGG - chr4.1:7529522-7529541 MS.gene70151:CDS 35.0%
TGATGCAAATTGAACTGTGA+TGG - chr4.1:7529851-7529870 MS.gene70151:CDS 35.0%
TTCAACAAAAGTGATGTCAG+AGG + chr4.1:7530391-7530410 None:intergenic 35.0%
TTCTGATGAAAGGTAGATGT+TGG - chr4.1:7531092-7531111 MS.gene70151:intron 35.0%
TTGTCTGTTTCAGTTATCAC+AGG + chr4.1:7530797-7530816 None:intergenic 35.0%
TTGTTGAATATCCGTGGAAA+TGG - chr4.1:7530403-7530422 MS.gene70151:CDS 35.0%
! AATTGGCCTGAGATTACAAT+TGG - chr4.1:7531127-7531146 MS.gene70151:CDS 35.0%
! ACATAACGGAAATGATGAGA+GGG - chr4.1:7531621-7531640 MS.gene70151:CDS 35.0%
! ACTTCTTTTCAACTTGCAAC+TGG + chr4.1:7531361-7531380 None:intergenic 35.0%
! CTGCATAGTGTTATTATGTG+TGG - chr4.1:7529731-7529750 MS.gene70151:CDS 35.0%
! CTTCTTTTCAACTTGCAACT+GGG + chr4.1:7531360-7531379 None:intergenic 35.0%
! TACTAGCACGTTGATAGAAT+GGG + chr4.1:7531033-7531052 None:intergenic 35.0%
! TTAATGTGCATTTTGCGAGT+TGG - chr4.1:7531002-7531021 MS.gene70151:intron 35.0%
! TTACTAGCACGTTGATAGAA+TGG + chr4.1:7531034-7531053 None:intergenic 35.0%
! TTAGCCTTTATTCCGAAAGA+GGG - chr4.1:7531494-7531513 MS.gene70151:intron 35.0%
!! GTTGGTAATAGACCAGTAAT+TGG - chr4.1:7531110-7531129 MS.gene70151:CDS 35.0%
!! TCACTTTTGTTGAATATCCG+TGG - chr4.1:7530397-7530416 MS.gene70151:CDS 35.0%
AACAGACAAACCTCCAATTG+AGG - chr4.1:7530808-7530827 MS.gene70151:CDS 40.0%
AACCATGAAATGCGTCTTGT+AGG - chr4.1:7529485-7529504 MS.gene70151:CDS 40.0%
AATTGATGGAGGTCCTCAAT+TGG + chr4.1:7530824-7530843 None:intergenic 40.0%
ACGTATCTCGCTAAGTATAG+GGG + chr4.1:7530876-7530895 None:intergenic 40.0%
AGACGTATCTCGCTAAGTAT+AGG + chr4.1:7530878-7530897 None:intergenic 40.0%
AGTCTCTTGCTTATGATGGT+TGG - chr4.1:7529582-7529601 MS.gene70151:CDS 40.0%
ATACTTAGCGAGATACGTCT+TGG - chr4.1:7530878-7530897 MS.gene70151:CDS 40.0%
ATGGTACATAAAAGGAAGGG+TGG - chr4.1:7530286-7530305 MS.gene70151:CDS 40.0%
CAGCTTCTTTGACATGATCA+TGG + chr4.1:7529655-7529674 None:intergenic 40.0%
CTTTCCCTCTTTCGGAATAA+AGG + chr4.1:7531501-7531520 None:intergenic 40.0%
GACGTATCTCGCTAAGTATA+GGG + chr4.1:7530877-7530896 None:intergenic 40.0%
GCAAAGCTTTCTGCACATAA+TGG - chr4.1:7531680-7531699 MS.gene70151:CDS 40.0%
GCAATGGATGTCCAAATCTT+TGG + chr4.1:7529798-7529817 None:intergenic 40.0%
GCCTGAGATTACAATTGGAA+GGG - chr4.1:7531132-7531151 MS.gene70151:CDS 40.0%
GGCTCATAAATCCATTTCCA+CGG + chr4.1:7530417-7530436 None:intergenic 40.0%
GGTCATTTCTGTGCTTCATT+TGG - chr4.1:7529521-7529540 MS.gene70151:CDS 40.0%
GTAAAGAAGTCAGATGCTGA+AGG + chr4.1:7531184-7531203 None:intergenic 40.0%
TATTCCGAAAGAGGGAAAGA+GGG - chr4.1:7531502-7531521 MS.gene70151:intron 40.0%
TCCCTTCCAATTGTAATCTC+AGG + chr4.1:7531136-7531155 None:intergenic 40.0%
TGGTCGATGTATCAAAGACT+TGG - chr4.1:7529550-7529569 MS.gene70151:CDS 40.0%
TGTAATCTCAGGCCAATTAC+TGG + chr4.1:7531125-7531144 None:intergenic 40.0%
TTATTCCGAAAGAGGGAAAG+AGG - chr4.1:7531501-7531520 MS.gene70151:intron 40.0%
TTCGGAACTCATGTGATAGT+CGG - chr4.1:7529944-7529963 MS.gene70151:CDS 40.0%
! ACCTAGGCTTCAAAAGTATG+TGG - chr4.1:7531598-7531617 MS.gene70151:CDS 40.0%
! AGATACGTCTTGGTTCTTAC+TGG - chr4.1:7530888-7530907 MS.gene70151:CDS 40.0%
! AGATGCATCGATATGACATC+AGG + chr4.1:7530364-7530383 None:intergenic 40.0%
! ATCGATATGACATCAGGTTG+TGG + chr4.1:7530358-7530377 None:intergenic 40.0%
! CTTAGCCTTTATTCCGAAAG+AGG - chr4.1:7531493-7531512 MS.gene70151:intron 40.0%
! GACATAACGGAAATGATGAG+AGG - chr4.1:7531620-7531639 MS.gene70151:CDS 40.0%
! GGGGTTGCAGAATCTTTTTA+TGG - chr4.1:7530267-7530286 MS.gene70151:CDS 40.0%
! TCGATATGACATCAGGTTGT+GGG + chr4.1:7530357-7530376 None:intergenic 40.0%
! TCTAAGTTCTAACCTTGCCA+AGG + chr4.1:7529702-7529721 None:intergenic 40.0%
! TGTGCTTCATTTGGGTTATC+TGG - chr4.1:7529530-7529549 MS.gene70151:CDS 40.0%
!! GGAAGCATCAAATGAATACC+TGG - chr4.1:7530909-7530928 MS.gene70151:CDS 40.0%
!!! TCCACATACTTTTGAAGCCT+AGG + chr4.1:7531602-7531621 None:intergenic 40.0%
AACAGCTAGCACGAAGTTCA+TGG - chr4.1:7530060-7530079 MS.gene70151:CDS 45.0%
AAGAAGCTGTGCCATCATCA+TGG - chr4.1:7529666-7529685 MS.gene70151:CDS 45.0%
AAGGGTGGCACCAATAACTT+TGG + chr4.1:7531408-7531427 None:intergenic 45.0%
AGAAGCTGTGCCATCATCAT+GGG - chr4.1:7529667-7529686 MS.gene70151:CDS 45.0%
AGACTGTCATCCGATTCAAC+TGG + chr4.1:7531320-7531339 None:intergenic 45.0%
AGTCAGATGCTGAAGGTGAA+TGG + chr4.1:7531177-7531196 None:intergenic 45.0%
AGTTTCAGCTACCGAGACAA+TGG - chr4.1:7530849-7530868 MS.gene70151:CDS 45.0%
ATTCCGAAAGAGGGAAAGAG+GGG - chr4.1:7531503-7531522 MS.gene70151:intron 45.0%
ATTGGAGGATTGATCCCACT+CGG + chr4.1:7531441-7531460 None:intergenic 45.0%
CTCCTACAAGACGCATTTCA+TGG + chr4.1:7529490-7529509 None:intergenic 45.0%
CTGCGCTTCTCCAAAGTTAT+TGG - chr4.1:7531395-7531414 MS.gene70151:intron 45.0%
GACAGTCTTTCCATTGTCAC+AGG - chr4.1:7531332-7531351 MS.gene70151:intron 45.0%
GATCAATCCTCCAATCTTGG+CGG - chr4.1:7531446-7531465 MS.gene70151:intron 45.0%
GGCCTGAGATTACAATTGGA+AGG - chr4.1:7531131-7531150 MS.gene70151:CDS 45.0%
GTTTCAGCTACCGAGACAAT+GGG - chr4.1:7530850-7530869 MS.gene70151:CDS 45.0%
TCGGAACTCATGTGATAGTC+GGG - chr4.1:7529945-7529964 MS.gene70151:CDS 45.0%
TCTGCAAGTGGTAAGGACTT+TGG + chr4.1:7531206-7531225 None:intergenic 45.0%
TGGGATCAATCCTCCAATCT+TGG - chr4.1:7531443-7531462 MS.gene70151:intron 45.0%
TTGTACCGCACCAGTTGAAT+CGG - chr4.1:7531307-7531326 MS.gene70151:intron 45.0%
!! ATTAAAAAAAATATTTCATT+GGG - chr4.1:7530247-7530266 MS.gene70151:intron 5.0%
AAACCAGGCGATGTGACCAT+CGG - chr4.1:7531533-7531552 MS.gene70151:intron 50.0%
AAGAGGGGTCATCCAAAACC+AGG - chr4.1:7531518-7531537 MS.gene70151:intron 50.0%
AATAAAGGCTAAGACCCCCG+TGG + chr4.1:7531486-7531505 None:intergenic 50.0%
AGTATAGGGGCCCATTGTCT+CGG + chr4.1:7530863-7530882 None:intergenic 50.0%
ATGCAAGAGGGGAGACTTAC+TGG + chr4.1:7530980-7530999 None:intergenic 50.0%
CGAAGACACTCCAGGATACT+GGG - chr4.1:7531646-7531665 MS.gene70151:CDS 50.0%
CGGAACTCATGTGATAGTCG+GGG - chr4.1:7529946-7529965 MS.gene70151:CDS 50.0%
CTTGTAGGAGACACTGCATC+TGG - chr4.1:7529500-7529519 MS.gene70151:CDS 50.0%
GCATTTGCGTTGTCTGCAAG+TGG + chr4.1:7531218-7531237 None:intergenic 50.0%
GTCATCCGATTCAACTGGTG+CGG + chr4.1:7531315-7531334 None:intergenic 50.0%
TGACCCCTCTTTCCCTCTTT+CGG + chr4.1:7531509-7531528 None:intergenic 50.0%
TGATGGAGGTCCTCAATTGG+AGG + chr4.1:7530821-7530840 None:intergenic 50.0%
TGCGTTGTCTGCAAGTGGTA+AGG + chr4.1:7531213-7531232 None:intergenic 50.0%
TGGAAGGGAGAAGAAGCAAC+CGG - chr4.1:7531147-7531166 MS.gene70151:CDS 50.0%
TTGGAGGATTGATCCCACTC+GGG + chr4.1:7531440-7531459 None:intergenic 50.0%
! ATGGTCACATCGCCTGGTTT+TGG + chr4.1:7531533-7531552 None:intergenic 50.0%
! CAGTATCCTGGAGTGTCTTC+GGG + chr4.1:7531647-7531666 None:intergenic 50.0%
! CCAGTATCCTGGAGTGTCTT+CGG + chr4.1:7531648-7531667 None:intergenic 50.0%
AGGGAGAAGAAGCAACCGGT+TGG - chr4.1:7531151-7531170 MS.gene70151:CDS 55.0%
CAACTGGGCTCCTGTGACAA+TGG + chr4.1:7531345-7531364 None:intergenic 55.0%
CCACTCGGGTGGTTTCTGAA+GGG + chr4.1:7531426-7531445 None:intergenic 55.0%
CCAGACACAACCCAGTATCC+TGG + chr4.1:7531659-7531678 None:intergenic 55.0%
CCAGGATACTGGGTTGTGTC+TGG - chr4.1:7531656-7531675 MS.gene70151:CDS 55.0%
CCGAAGACACTCCAGGATAC+TGG - chr4.1:7531645-7531664 MS.gene70151:CDS 55.0%
CCTTCAGAAACCACCCGAGT+GGG - chr4.1:7531424-7531443 MS.gene70151:intron 55.0%
CGGTTTCAGCAGCAAGTCCA+CGG - chr4.1:7531466-7531485 MS.gene70151:intron 55.0%
CTAACCTTGCCAAGGCCTCA+GGG + chr4.1:7529694-7529713 None:intergenic 55.0%
GCTGAAACCGCCAAGATTGG+AGG + chr4.1:7531456-7531475 None:intergenic 55.0%
GCTGAAGGTGAATGGCCAAC+CGG + chr4.1:7531169-7531188 None:intergenic 55.0%
GCTGCTGAAACCGCCAAGAT+TGG + chr4.1:7531459-7531478 None:intergenic 55.0%
GGTTTCAGCAGCAAGTCCAC+GGG - chr4.1:7531467-7531486 MS.gene70151:intron 55.0%
GTGATAGTCGGGGTGAGCAT+GGG - chr4.1:7529956-7529975 MS.gene70151:CDS 55.0%
GTTTCAGCAGCAAGTCCACG+GGG - chr4.1:7531468-7531487 MS.gene70151:intron 55.0%
TCTAACCTTGCCAAGGCCTC+AGG + chr4.1:7529695-7529714 None:intergenic 55.0%
TGAAGCCTAGGTGTACGCAC+TGG + chr4.1:7531590-7531609 None:intergenic 55.0%
TGTGATAGTCGGGGTGAGCA+TGG - chr4.1:7529955-7529974 MS.gene70151:CDS 55.0%
TTTCAGCAGCAAGTCCACGG+GGG - chr4.1:7531469-7531488 MS.gene70151:intron 55.0%
! TGGAGAAGCGCAGCCGTAAA+AGG + chr4.1:7531388-7531407 None:intergenic 55.0%
ATAGTCGGGGTGAGCATGGG+AGG - chr4.1:7529959-7529978 MS.gene70151:CDS 60.0%
ATCATGGGACCCTGAGGCCT+TGG - chr4.1:7529682-7529701 MS.gene70151:CDS 60.0%
CCCACTCGGGTGGTTTCTGA+AGG + chr4.1:7531427-7531446 None:intergenic 60.0%
CCCTTCAGAAACCACCCGAG+TGG - chr4.1:7531423-7531442 MS.gene70151:intron 60.0%
CTGCACCAGTGCGTACACCT+AGG - chr4.1:7531582-7531601 MS.gene70151:CDS 60.0%
GAACCGATGGTCACATCGCC+TGG + chr4.1:7531539-7531558 None:intergenic 60.0%
GAGGATTGATCCCACTCGGG+TGG + chr4.1:7531437-7531456 None:intergenic 60.0%
GCCATCATCATGGGACCCTG+AGG - chr4.1:7529676-7529695 MS.gene70151:CDS 60.0%
GCCTCAGGGTCCCATGATGA+TGG + chr4.1:7529680-7529699 None:intergenic 60.0%
TAGTCGGGGTGAGCATGGGA+GGG - chr4.1:7529960-7529979 MS.gene70151:CDS 60.0%
! CTAGGTGTACGCACTGGTGC+AGG + chr4.1:7531584-7531603 None:intergenic 60.0%
! CTCGGGTGGTTTCTGAAGGG+TGG + chr4.1:7531423-7531442 None:intergenic 60.0%
AGAGGGCCCGAAGACACTCC+AGG - chr4.1:7531638-7531657 MS.gene70151:CDS 65.0%
CGGGGTGAGCATGGGAGGGA+AGG - chr4.1:7529964-7529983 MS.gene70151:CDS 70.0%
GGGACCCTGAGGCCTTGGCA+AGG - chr4.1:7529687-7529706 MS.gene70151:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 7529470 7531772 7529470 ID=MS.gene70151
chr4.1 mRNA 7529470 7531772 7529470 ID=MS.gene70151.t1;Parent=MS.gene70151
chr4.1 exon 7531534 7531772 7531534 ID=MS.gene70151.t1.exon1;Parent=MS.gene70151.t1
chr4.1 CDS 7531534 7531772 7531534 ID=cds.MS.gene70151.t1;Parent=MS.gene70151.t1
chr4.1 exon 7531107 7531311 7531107 ID=MS.gene70151.t1.exon2;Parent=MS.gene70151.t1
chr4.1 CDS 7531107 7531311 7531107 ID=cds.MS.gene70151.t1;Parent=MS.gene70151.t1
chr4.1 exon 7530782 7530965 7530782 ID=MS.gene70151.t1.exon3;Parent=MS.gene70151.t1
chr4.1 CDS 7530782 7530965 7530782 ID=cds.MS.gene70151.t1;Parent=MS.gene70151.t1
chr4.1 exon 7530263 7530429 7530263 ID=MS.gene70151.t1.exon4;Parent=MS.gene70151.t1
chr4.1 CDS 7530263 7530429 7530263 ID=cds.MS.gene70151.t1;Parent=MS.gene70151.t1
chr4.1 exon 7529470 7530138 7529470 ID=MS.gene70151.t1.exon5;Parent=MS.gene70151.t1
chr4.1 CDS 7529470 7530138 7529470 ID=cds.MS.gene70151.t1;Parent=MS.gene70151.t1
Gene Sequence

>MS.gene70151

ATGTTGCAGCACTTCAACCATGAAATGCGTCTTGTAGGAGACACTGCATCTGGTCATTTCTGTGCTTCATTTGGGTTATCTGGTCGATGTATCAAAGACTTGGCTTCTATTAAGTCTCTTGCTTATGATGGTTGGTTCATCAAACGCTATGCTGTTGAATTAGAAAACTATCATGGTGAACTCCATGATCATGTCAAAGAAGCTGTGCCATCATCATGGGACCCTGAGGCCTTGGCAAGGTTAGAACTTAGAACCCTTGAACTGCATAGTGTTATTATGTGTGGACACTTAACTTAATCACACTCCAAATTTCTATCTAAATATTCCAAAGATTTGGACATCCATTGCTCTATAACTAGAAATTTTGTAAGTTCTTTCCTATGATGCAAATTGAACTGTGATGGATGACATTAGTTAAATTATTGACAAATCATAAAATAATTTATACTGATTCATACAAGGTTCATAGAACGTTTCGGAACTCATGTGATAGTCGGGGTGAGCATGGGAGGGAAGGATGTGTTTTATGTTAGACAAGAAGATACATCAGATATCAGTGATCCAACTAGTATCCAAAAACTTTTGAAGGAAACAGCTAGCACGAAGTTCATGGATTCTGCTGATAATCATCGTTCAGCTTCTGAAGACTTAAGTAACAAAAAAGAGGTAACACACCACATTTTTATTATGGCATTCCTTTAGCACTATACTACCTTTGACCGACCATCTTATTTTGAAATGAAATTATTAAATTTTGAAAAAACAGATGCATCATCCATTAAAAAAAATATTTCATTGGGGTTGCAGAATCTTTTTATGGTACATAAAAGGAAGGGTGGAAGCAGTAAAACAATGTATCATAGTGAATGGTTGGATACTATTGACCCACAACCTGATGTCATATCGATGCATCTTCTTCCTCTGACATCACTTTTGTTGAATATCCGTGGAAATGGATTTATGAGCCATGCTATAAATCTCTACCTTCGCTGTAAGTATTGATTTGAGTTTTTTTGTTGCACAAGTATGTGACAGAAATGTAAATTGTTCTTTTGATTGTACCTAATTTTAAGAAAGTGATATAAAAAATGTAGCAGATTATGTCAAGAAAAATGGTATACCATTAACTATCATTCAAAGGGAACACACTTTATCACTTTTTCTTGTCTAGCACACACGAAGAAATTAGTGAGTTGCGCTCTTTCTGTTATAAACATTATACAAGGATAGATCGGGTAAACCAGTATTCCATTAAACATCTCAGAATTGAATATAAATATATAATACGCTCTTTCTGAAACTGATTTTGCTGAATCTGCAATAACCTGTGATAACTGAAACAGACAAACCTCCAATTGAGGACCTCCATCAATTTTTCGAGTTTCAGCTACCGAGACAATGGGCCCCTATACTTAGCGAGATACGTCTTGGTTCTTACTGGAAGCATCAAATGAATACCTGGCTAAGATTTAGTATCTTGGGTCCTAAGCTTTGCATAAATACAATTCCAGTAAGTCTCCCCTCTTGCATTTTTAATGTGCATTTTGCGAGTTGGTGTTTCCCATTCTATCAACGTGCTAGTAAACTACGAATCTCTGAATATTGGCTCTTTTTTTTTCATCTTCTGATGAAAGGTAGATGTTGGTAATAGACCAGTAATTGGCCTGAGATTACAATTGGAAGGGAGAAGAAGCAACCGGTTGGCCATTCACCTTCAGCATCTGACTTCTTTACCAAAGTCCTTACCACTTGCAGACAACGCAAATGCTTATTTGTCTTGTGACTCATACAGCTGCAACTTCCATAAGAAAGTGAAATGGAGCTGCTTTTCATATGTTTGTACCGCACCAGTTGAATCGGATGACAGTCTTTCCATTGTCACAGGAGCCCAGTTGCAAGTTGAAAAGAAGTGTCTCCTTTTACGGCTGCGCTTCTCCAAAGTTATTGGTGCCACCCTTCAGAAACCACCCGAGTGGGATCAATCCTCCAATCTTGGCGGTTTCAGCAGCAAGTCCACGGGGGTCTTAGCCTTTATTCCGAAAGAGGGAAAGAGGGGTCATCCAAAACCAGGCGATGTGACCATCGGTTCTACTACATATTCTGCTGCACTACCTGCACCAGTGCGTACACCTAGGCTTCAAAAGTATGTGGACATAACGGAAATGATGAGAGGGCCCGAAGACACTCCAGGATACTGGGTTGTGTCTGGTGCAAAGCTTTCTGCACATAATGGGAAAATATATCTCCTTGTTAAGTATTCACTATTGAACTTTGTTATGCAGTGTGAAACTGAAGCTTCATAG

Protein sequence

>MS.gene70151.t1

MLQHFNHEMRLVGDTASGHFCASFGLSGRCIKDLASIKSLAYDGWFIKRYAVELENYHGELHDHVKEAVPSSWDPEALARFIERFGTHVIVGVSMGGKDVFYVRQEDTSDISDPTSIQKLLKETASTKFMDSADNHRSASEDLSNKKENLFMVHKRKGGSSKTMYHSEWLDTIDPQPDVISMHLLPLTSLLLNIRGNGFMSHAINLYLRYKPPIEDLHQFFEFQLPRQWAPILSEIRLGSYWKHQMNTWLRFSILGPKLCINTIPVDVGNRPVIGLRLQLEGRRSNRLAIHLQHLTSLPKSLPLADNANAYLSCDSYSCNFHKKVKWSCFSYVCTAPVESDDSLSIVTGAQLQVEKKCLLLRLRFSKVIGATLQKPPEWDQSSNLGGFSSKSTGVLAFIPKEGKRGHPKPGDVTIGSTTYSAALPAPVRTPRLQKYVDITEMMRGPEDTPGYWVVSGAKLSAHNGKIYLLVKYSLLNFVMQCETEAS