AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70223

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70223.t1 MTR_8g093580 94.404 411 22 1 1 411 80 489 0.0 788
MS.gene70223.t1 MTR_8g063550 68.473 406 80 7 1 405 80 438 0.0 521
MS.gene70223.t1 MTR_8g063550 76.000 300 66 4 1 299 80 374 4.49e-156 447
MS.gene70223.t1 MTR_8g063550 80.800 250 46 2 1 250 80 327 4.46e-142 408
MS.gene70223.t1 MTR_3g096140 58.710 155 59 2 1 150 81 235 3.32e-60 197
MS.gene70223.t1 MTR_3g096140 58.710 155 59 2 1 150 60 214 2.41e-59 196
MS.gene70223.t1 MTR_3g096140 58.710 155 59 2 1 150 81 235 4.16e-59 196
MS.gene70223.t1 MTR_1g090723 54.737 95 43 0 3 97 85 179 4.66e-36 140
MS.gene70223.t1 MTR_1g090723 56.842 95 40 1 3 97 85 178 1.52e-35 138
MS.gene70223.t1 MTR_1g090723 56.842 95 40 1 3 97 85 178 1.92e-35 138
MS.gene70223.t1 MTR_1g097300 56.000 100 44 0 3 102 95 194 5.98e-34 133
MS.gene70223.t1 MTR_0036s0150 51.546 97 46 1 3 99 82 177 6.95e-33 130
MS.gene70223.t1 MTR_1g090720 49.123 114 51 2 1 108 116 228 4.16e-25 107
MS.gene70223.t1 MTR_6g477900 53.247 77 36 0 3 79 82 158 5.56e-25 102
MS.gene70223.t1 MTR_2g062730 46.316 95 44 3 3 96 87 175 1.21e-22 98.6
MS.gene70223.t1 MTR_5g076850 46.591 88 46 1 3 89 82 169 6.59e-22 98.6
MS.gene70223.t1 MTR_7g011130 38.462 104 48 2 3 90 93 196 3.97e-21 94.4
MS.gene70223.t1 MTR_4g108760 45.783 83 43 1 3 83 91 173 4.18e-21 94.4
MS.gene70223.t1 MTR_3g070040 40.426 94 49 3 3 90 79 171 5.84e-21 93.6
MS.gene70223.t1 MTR_3g064580 45.455 88 46 2 3 88 82 169 7.09e-21 95.5
MS.gene70223.t1 MTR_6g084430 49.333 75 36 1 3 77 79 151 8.21e-21 92.8
MS.gene70223.t1 MTR_4g101680 42.373 118 59 5 3 117 84 195 1.34e-20 92.8
MS.gene70223.t1 MTR_3g435150 44.578 83 44 1 3 83 90 172 1.61e-20 91.7
MS.gene70223.t1 MTR_2g064090 51.316 76 36 1 3 77 82 157 3.69e-20 91.3
MS.gene70223.t1 MTR_7g011120 38.776 98 50 2 3 90 82 179 4.47e-20 90.5
MS.gene70223.t1 MTR_4g035590 47.368 76 37 1 3 78 85 157 4.79e-20 91.3
MS.gene70223.t1 MTR_8g024480 41.176 85 41 1 3 78 92 176 5.33e-20 92.0
MS.gene70223.t1 MTR_3g109340 44.578 83 43 2 3 83 96 177 6.98e-20 90.9
MS.gene70223.t1 MTR_3g109340 43.373 83 43 2 3 83 96 176 1.67e-19 89.7
MS.gene70223.t1 MTR_3g093050 46.753 77 41 0 1 77 96 172 2.36e-19 90.5
MS.gene70223.t1 MTR_6g012670 38.947 95 52 2 3 93 94 186 2.37e-19 88.6
MS.gene70223.t1 MTR_3g093050 46.753 77 41 0 1 77 96 172 2.62e-19 90.5
MS.gene70223.t1 MTR_1g096430 45.349 86 43 2 3 87 84 166 2.99e-19 88.6
MS.gene70223.t1 MTR_5g069030 44.872 78 43 0 1 78 99 176 3.07e-19 90.5
MS.gene70223.t1 MTR_8g076110 47.368 76 38 1 3 78 83 156 9.44e-19 86.7
MS.gene70223.t1 MTR_2g078700 47.619 84 38 3 3 81 97 179 1.13e-18 87.4
MS.gene70223.t1 MTR_4g036030 38.679 106 52 4 3 104 84 180 2.68e-18 85.9
MS.gene70223.t1 MTR_5g012080 35.811 148 75 7 3 147 84 214 3.01e-18 85.9
MS.gene70223.t1 MTR_7g005280 41.379 87 47 2 3 87 86 170 5.91e-18 83.6
MS.gene70223.t1 MTR_3g070030 38.298 94 50 3 3 90 93 184 6.76e-18 84.7
MS.gene70223.t1 MTR_2g064470 46.053 76 40 1 3 77 83 158 7.59e-18 84.0
MS.gene70223.t1 MTR_6g032770 47.500 80 36 3 3 77 92 170 1.03e-17 84.7
MS.gene70223.t1 MTR_2g079990 35.789 95 58 1 3 94 90 184 1.52e-17 84.0
MS.gene70223.t1 MTR_3g093040 44.304 79 40 2 1 77 182 258 2.13e-17 82.8
MS.gene70223.t1 MTR_5g021710 44.737 76 40 1 3 78 85 158 2.29e-17 83.2
MS.gene70223.t1 MTR_1g008740 44.156 77 40 2 3 77 88 163 2.36e-17 83.2
MS.gene70223.t1 MTR_1g008740 44.156 77 40 2 3 77 102 177 3.22e-17 82.8
MS.gene70223.t1 MTR_4g081870 39.759 83 46 2 3 81 83 165 5.74e-17 80.9
MS.gene70223.t1 MTR_7g085260 44.578 83 36 3 3 77 91 171 6.50e-17 82.0
MS.gene70223.t1 MTR_2g086880 43.836 73 34 1 2 74 92 157 1.34e-16 82.0
MS.gene70223.t1 MTR_2g086880 43.836 73 34 1 2 74 92 157 1.63e-16 82.0
MS.gene70223.t1 MTR_3g088110 42.500 80 42 2 3 79 81 159 2.83e-16 79.0
MS.gene70223.t1 MTR_8g099750 39.583 96 47 3 1 89 84 175 4.20e-16 77.4
MS.gene70223.t1 MTR_4g098630 40.476 84 47 1 3 83 82 165 7.40e-16 78.2
MS.gene70223.t1 MTR_4g075980 48.718 78 32 2 3 77 89 161 9.88e-16 77.8
MS.gene70223.t1 MTR_4g134460 42.500 80 39 3 3 79 128 203 1.21e-15 78.6
MS.gene70223.t1 MTR_5g041940 40.000 80 44 2 3 78 77 156 1.22e-15 76.6
MS.gene70223.t1 MTR_8g094580 38.272 81 45 2 3 79 27 106 1.62e-15 75.9
MS.gene70223.t1 MTR_8g467490 40.698 86 40 3 3 77 88 173 1.65e-15 78.2
MS.gene70223.t1 MTR_2157s0010 36.957 92 46 2 3 82 82 173 1.89e-15 76.3
MS.gene70223.t1 MTR_7g100990 37.363 91 50 3 3 87 85 174 1.89e-15 77.4
MS.gene70223.t1 MTR_2g080010 38.596 114 52 5 3 103 89 197 2.04e-15 77.4
MS.gene70223.t1 MTR_8g059170 39.241 79 42 2 3 77 88 164 3.16e-15 76.6
MS.gene70223.t1 MTR_8g094580 38.272 81 45 2 3 79 81 160 3.85e-15 75.9
MS.gene70223.t1 MTR_1g069805 44.156 77 37 2 3 77 84 156 5.50e-15 75.1
MS.gene70223.t1 MTR_7g085220 36.364 88 43 2 3 77 82 169 7.58e-15 75.5
MS.gene70223.t1 MTR_6g011860 41.176 85 40 3 3 77 89 173 9.54e-15 75.9
MS.gene70223.t1 MTR_5g014300 37.500 104 55 2 3 99 82 182 1.16e-14 75.1
MS.gene70223.t1 MTR_3g116070 39.241 79 46 1 3 79 98 176 3.33e-14 73.9
MS.gene70223.t1 MTR_3g096920 38.750 80 45 2 3 79 81 159 3.49e-14 73.2
MS.gene70223.t1 MTR_7g097090 43.421 76 37 2 3 76 84 155 3.62e-14 73.2
MS.gene70223.t1 MTR_5g040420 38.824 85 42 3 3 77 88 172 8.04e-14 72.8
MS.gene70223.t1 MTR_7g070140 50.909 55 25 1 2 54 37 91 1.45e-13 67.8
MS.gene70223.t1 MTR_2g068880 37.778 90 41 2 3 77 97 186 1.98e-13 71.2
MS.gene70223.t1 MTR_3g098810 38.947 95 48 2 1 85 84 178 4.07e-13 68.9
MS.gene70223.t1 MTR_2g079990 44.262 61 34 0 3 63 90 150 4.91e-13 70.5
MS.gene70223.t1 MTR_1g097300 53.704 54 25 0 49 102 1 54 6.41e-13 70.5
MS.gene70223.t1 MTR_2g093810 39.506 81 43 3 3 77 88 168 2.58e-12 67.8
MS.gene70223.t1 MTR_4g089135 51.852 54 24 1 3 54 89 142 7.25e-12 66.6
MS.gene70223.t1 MTR_2g068920 51.786 56 23 1 3 54 96 151 1.37e-11 65.5
MS.gene70223.t1 MTR_8g023900 40.506 79 39 4 1 77 268 340 1.93e-11 65.9
MS.gene70223.t1 MTR_7g105170 32.927 82 49 2 2 77 83 164 2.12e-11 64.3
MS.gene70223.t1 MTR_5g090970 34.483 87 45 3 3 77 91 177 2.49e-11 64.7
MS.gene70223.t1 MTR_5g090970 34.483 87 45 3 3 77 92 178 2.51e-11 64.7
MS.gene70223.t1 MTR_7g070150 42.105 57 30 1 21 77 4 57 3.12e-11 60.1
MS.gene70223.t1 MTR_3g098810 51.724 58 24 1 1 54 84 141 3.48e-11 62.0
MS.gene70223.t1 MTR_2g086690 35.802 81 48 3 3 79 84 164 3.71e-11 63.5
MS.gene70223.t1 MTR_3g096920 46.429 56 29 1 3 58 81 135 8.70e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70223.t1 AT5G09330 51.899 158 70 2 3 156 82 237 1.43e-44 161
MS.gene70223.t1 AT5G09330 51.899 158 70 2 3 156 82 237 1.43e-44 161
MS.gene70223.t1 AT5G09330 51.899 158 70 2 3 156 82 237 1.43e-44 161
MS.gene70223.t1 AT5G09330 51.899 158 70 2 3 156 82 237 1.43e-44 161
MS.gene70223.t1 AT5G09330 51.899 158 70 2 3 156 82 237 1.43e-44 161
MS.gene70223.t1 AT5G64060 49.660 147 72 1 3 149 82 226 6.74e-42 151
MS.gene70223.t1 AT5G04410 51.304 115 51 1 3 112 85 199 3.49e-38 145
MS.gene70223.t1 AT3G10500 57.778 90 38 0 3 92 85 174 7.92e-35 135
MS.gene70223.t1 AT1G34190 52.525 99 47 0 3 101 92 190 6.12e-32 127
MS.gene70223.t1 AT3G10490 47.899 119 52 3 1 118 101 210 1.02e-31 121
MS.gene70223.t1 AT1G34180 46.789 109 52 1 3 105 92 200 1.13e-31 125
MS.gene70223.t1 AT1G34180 46.789 109 52 1 3 105 104 212 1.44e-31 125
MS.gene70223.t1 AT3G10490 47.899 119 52 3 1 118 1 110 2.51e-31 122
MS.gene70223.t1 AT3G10490 47.899 119 52 3 1 118 1 110 2.51e-31 122
MS.gene70223.t1 AT1G34180 46.789 109 52 1 3 105 92 200 2.99e-31 125
MS.gene70223.t1 AT1G34180 46.789 109 52 1 3 105 104 212 3.17e-31 125
MS.gene70223.t1 AT3G10490 47.899 119 52 3 1 118 101 210 1.51e-30 122
MS.gene70223.t1 AT3G10480 44.444 126 60 3 1 125 101 217 1.16e-29 120
MS.gene70223.t1 AT3G10480 44.000 125 61 2 1 125 101 216 1.30e-29 119
MS.gene70223.t1 AT3G10480 44.444 126 60 3 1 125 134 250 1.99e-29 120
MS.gene70223.t1 AT1G32870 53.261 92 41 1 3 92 84 175 1.57e-27 114
MS.gene70223.t1 AT1G32870 53.261 92 41 1 3 92 84 175 1.73e-27 114
MS.gene70223.t1 AT1G32870 53.261 92 41 1 3 92 120 211 2.67e-27 114
MS.gene70223.t1 AT3G17730 54.545 77 35 0 3 79 82 158 5.16e-25 103
MS.gene70223.t1 AT3G12977 50.617 81 39 1 3 82 39 119 6.84e-24 99.4
MS.gene70223.t1 AT1G65910 47.674 86 45 0 3 88 82 167 1.90e-23 103
MS.gene70223.t1 AT1G33060 52.000 75 36 0 3 77 100 174 2.67e-23 102
MS.gene70223.t1 AT1G33060 52.000 75 36 0 3 77 100 174 2.74e-23 102
MS.gene70223.t1 AT3G12977 51.250 80 38 1 3 81 92 171 5.49e-23 98.2
MS.gene70223.t1 AT5G61430 48.193 83 41 1 3 83 27 109 2.10e-22 96.3
MS.gene70223.t1 AT4G10350 48.684 76 39 0 3 78 39 114 3.95e-22 96.3
MS.gene70223.t1 AT5G61430 48.193 83 41 1 3 83 90 172 7.54e-22 96.3
MS.gene70223.t1 AT1G71930 35.156 128 70 3 3 126 86 204 7.61e-22 95.9
MS.gene70223.t1 AT1G71930 35.156 128 70 3 3 126 86 204 7.61e-22 95.9
MS.gene70223.t1 AT4G10350 48.684 76 39 0 3 78 86 161 9.49e-22 95.9
MS.gene70223.t1 AT5G39610 46.988 83 42 1 3 83 94 176 6.04e-21 92.4
MS.gene70223.t1 AT1G79580 49.351 77 35 2 3 78 94 167 9.37e-21 93.6
MS.gene70223.t1 AT1G79580 49.351 77 35 2 3 78 94 167 9.37e-21 93.6
MS.gene70223.t1 AT1G79580 49.351 77 35 2 3 78 94 167 9.37e-21 93.6
MS.gene70223.t1 AT1G79580 49.351 77 35 2 3 78 94 167 9.37e-21 93.6
MS.gene70223.t1 AT1G79580 49.351 77 35 2 3 78 94 167 9.37e-21 93.6
MS.gene70223.t1 AT3G49530 37.879 132 65 4 3 131 89 206 4.11e-20 92.0
MS.gene70223.t1 AT3G49530 37.879 132 65 4 3 131 89 206 4.71e-20 92.4
MS.gene70223.t1 AT1G33280 46.053 76 38 1 3 78 85 157 4.76e-20 90.5
MS.gene70223.t1 AT5G24590 46.835 79 41 1 1 78 87 165 5.89e-20 92.0
MS.gene70223.t1 AT1G56010 34.239 184 92 6 3 174 27 193 6.05e-20 89.4
MS.gene70223.t1 AT5G07680 44.578 83 44 1 3 83 77 159 6.90e-20 90.1
MS.gene70223.t1 AT4G35580 48.000 75 39 0 3 77 85 159 7.05e-20 92.0
MS.gene70223.t1 AT1G12260 39.252 107 59 3 3 108 84 185 7.37e-20 91.3
MS.gene70223.t1 AT4G35580 48.000 75 39 0 3 77 85 159 7.39e-20 92.0
MS.gene70223.t1 AT4G35580 48.000 75 39 0 3 77 85 159 7.47e-20 92.0
MS.gene70223.t1 AT2G27300 47.945 73 31 1 2 74 88 153 7.57e-20 90.5
MS.gene70223.t1 AT1G12260 39.252 107 59 3 3 108 84 185 8.79e-20 90.1
MS.gene70223.t1 AT5G07680 44.578 83 44 1 3 83 91 173 8.85e-20 90.1
MS.gene70223.t1 AT1G56010 34.239 184 92 6 3 174 94 260 9.50e-20 89.7
MS.gene70223.t1 AT1G62700 38.532 109 59 4 3 108 84 187 1.33e-19 90.5
MS.gene70223.t1 AT1G62700 38.532 109 59 4 3 108 84 187 1.33e-19 90.5
MS.gene70223.t1 AT1G76420 50.633 79 36 2 3 79 96 173 1.39e-19 89.7
MS.gene70223.t1 AT3G18400 41.975 81 46 1 3 83 79 158 2.54e-19 88.6
MS.gene70223.t1 AT5G13180 50.000 84 39 2 3 84 85 167 2.83e-19 87.0
MS.gene70223.t1 AT2G18060 45.570 79 41 1 3 81 86 162 9.19e-19 87.4
MS.gene70223.t1 AT2G18060 45.570 79 41 1 3 81 86 162 9.19e-19 87.4
MS.gene70223.t1 AT5G17260 47.368 76 39 1 3 77 82 157 1.00e-18 88.2
MS.gene70223.t1 AT4G36160 42.708 96 46 2 3 98 87 173 1.06e-18 87.4
MS.gene70223.t1 AT4G36160 42.708 96 46 2 3 98 87 173 1.06e-18 87.4
MS.gene70223.t1 AT4G36160 42.708 96 46 2 3 98 91 177 1.21e-18 87.4
MS.gene70223.t1 AT1G69490 36.937 111 64 2 3 109 83 191 1.22e-18 85.5
MS.gene70223.t1 AT3G03200 47.368 76 39 1 3 77 82 157 1.38e-18 87.8
MS.gene70223.t1 AT5G18270 46.988 83 37 3 3 80 95 175 1.40e-18 86.7
MS.gene70223.t1 AT2G24430 46.753 77 38 2 3 77 90 165 1.44e-18 86.3
MS.gene70223.t1 AT2G24430 46.753 77 38 2 3 77 90 165 1.44e-18 86.3
MS.gene70223.t1 AT2G46770 39.326 89 41 2 3 78 93 181 1.49e-18 87.0
MS.gene70223.t1 AT5G18270 46.988 83 37 3 3 80 95 175 1.51e-18 86.7
MS.gene70223.t1 AT3G29035 41.758 91 51 1 3 91 98 188 3.14e-18 85.5
MS.gene70223.t1 AT3G04060 45.679 81 41 2 3 80 94 174 3.87e-18 85.5
MS.gene70223.t1 AT5G22290 44.595 74 33 2 2 74 95 161 5.35e-18 85.1
MS.gene70223.t1 AT2G18060 40.659 91 44 2 8 98 3 83 7.04e-18 83.6
MS.gene70223.t1 AT3G44290 43.836 73 34 1 2 74 88 153 9.23e-18 82.4
MS.gene70223.t1 AT3G61910 39.773 88 40 1 3 77 88 175 1.58e-17 83.6
MS.gene70223.t1 AT5G62380 44.737 76 40 1 3 78 84 157 1.68e-17 83.6
MS.gene70223.t1 AT5G62380 44.737 76 40 1 3 78 84 157 1.68e-17 83.6
MS.gene70223.t1 AT5G53950 48.750 80 35 3 3 77 91 169 1.81e-17 84.0
MS.gene70223.t1 AT3G44290 43.836 73 34 1 2 74 88 153 3.35e-17 82.4
MS.gene70223.t1 AT1G54330 45.122 82 42 1 3 84 82 160 3.83e-17 82.0
MS.gene70223.t1 AT3G15170 44.186 86 42 3 3 83 94 178 5.42e-17 81.6
MS.gene70223.t1 AT1G52890 36.170 94 56 1 3 92 88 181 5.76e-17 81.6
MS.gene70223.t1 AT1G32770 39.535 86 42 1 3 78 93 178 8.78e-17 81.6
MS.gene70223.t1 AT3G15500 38.158 76 47 0 3 78 88 163 1.74e-16 80.1
MS.gene70223.t1 AT1G01720 36.036 111 62 3 3 105 81 190 2.18e-16 79.7
MS.gene70223.t1 AT4G27410 38.667 75 46 0 3 77 88 162 2.32e-16 79.7
MS.gene70223.t1 AT5G66300 32.867 143 91 4 3 143 89 228 2.35e-16 79.3
MS.gene70223.t1 AT4G27410 38.667 75 46 0 3 77 105 179 2.74e-16 79.7
MS.gene70223.t1 AT2G33480 44.737 76 40 1 3 78 86 159 3.34e-16 78.6
MS.gene70223.t1 AT2G33480 44.737 76 42 0 3 78 29 104 3.48e-16 77.4
MS.gene70223.t1 AT5G22290 43.478 69 31 2 7 74 1 62 3.73e-16 77.8
MS.gene70223.t1 AT5G46590 42.857 77 42 2 3 77 82 158 6.00e-16 78.2
MS.gene70223.t1 AT2G33480 44.737 76 42 0 3 78 86 161 8.74e-16 77.4
MS.gene70223.t1 AT1G77450 41.250 80 43 2 3 79 84 162 1.09e-15 77.0
MS.gene70223.t1 AT5G08790 39.024 82 44 2 3 79 81 161 1.47e-15 77.0
MS.gene70223.t1 AT4G17980 43.038 79 41 2 3 77 82 160 3.04e-15 75.9
MS.gene70223.t1 AT4G17980 43.038 79 41 2 3 77 82 160 3.40e-15 76.3
MS.gene70223.t1 AT5G63790 39.024 82 44 2 3 79 124 204 3.79e-15 76.3
MS.gene70223.t1 AT5G63790 39.024 82 44 2 3 79 134 214 3.81e-15 76.3
MS.gene70223.t1 AT4G28530 45.455 77 36 2 3 77 100 172 4.40e-15 76.6
MS.gene70223.t1 AT3G15510 42.045 88 38 4 3 77 91 178 1.32e-14 75.1
MS.gene70223.t1 AT1G61110 38.636 88 41 2 3 77 90 177 1.83e-14 74.3
MS.gene70223.t1 AT1G32510 38.824 85 44 2 1 77 80 164 1.88e-14 73.9
MS.gene70223.t1 AT2G02450 41.026 78 43 2 3 79 125 200 2.63e-14 74.3
MS.gene70223.t1 AT5G46590 49.153 59 29 1 3 60 82 140 2.77e-14 73.2
MS.gene70223.t1 AT2G02450 41.026 78 43 2 3 79 125 200 3.91e-14 73.9
MS.gene70223.t1 AT2G43000 40.789 76 44 1 3 77 14 89 5.71e-14 70.9
MS.gene70223.t1 AT2G17040 42.308 78 37 2 3 77 80 152 8.46e-14 71.6
MS.gene70223.t1 AT1G26870 39.535 86 41 3 3 77 90 175 1.17e-13 72.8
MS.gene70223.t1 AT3G04070 38.636 88 40 3 3 77 84 170 1.51e-13 71.6
MS.gene70223.t1 AT4G01540 45.000 80 36 2 1 77 80 154 1.84e-13 72.0
MS.gene70223.t1 AT4G01540 45.000 80 36 2 1 77 80 154 1.92e-13 72.0
MS.gene70223.t1 AT4G01520 43.750 80 37 2 1 77 80 154 2.63e-13 70.5
MS.gene70223.t1 AT4G01540 45.000 80 36 2 1 77 80 154 2.94e-13 71.6
MS.gene70223.t1 AT4G01540 45.000 80 36 2 1 77 80 154 3.01e-13 71.2
MS.gene70223.t1 AT2G43000 40.789 76 44 1 3 77 92 167 3.13e-13 70.1
MS.gene70223.t1 AT5G04395 50.820 61 27 1 1 58 113 173 7.75e-13 67.4
MS.gene70223.t1 AT3G04070 30.097 103 44 2 3 77 84 186 4.46e-12 67.4
MS.gene70223.t1 AT4G01550 40.964 83 33 3 2 77 80 153 7.68e-12 67.4
MS.gene70223.t1 AT1G52880 39.080 87 41 3 3 77 91 177 9.09e-11 63.2

Find 117 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTCGACTCCAACTTTC+AGG 0.173690 4.1:+8405070 None:intergenic
ATGAAACGAGCTACGGAAAT+TGG 0.193778 4.1:-8407158 MS.gene70223:CDS
CGTGGATTGCTCGTCTGATT+TGG 0.251020 4.1:-8405221 MS.gene70223:CDS
TGGCTTCTACGGGCAATGTT+GGG 0.251527 4.1:-8405159 MS.gene70223:CDS
CCTAGGAATGGTGCACAATA+TGG 0.269913 4.1:-8406261 MS.gene70223:CDS
CCTGTTTGACATGGATTTGC+AGG 0.278572 4.1:+8406006 None:intergenic
CACACACGGGCTGGCTTCTA+CGG 0.300862 4.1:-8405170 MS.gene70223:CDS
CTCCAAACTAGTGGATATAT+TGG 0.305281 4.1:-8406117 MS.gene70223:CDS
TCATTAACAGTTTGATTGTC+TGG 0.311175 4.1:+8405580 None:intergenic
CTCCAGTCTTCCTCATTAAA+TGG 0.323348 4.1:+8406234 None:intergenic
ATTAGATGTCACAGGCAAAC+TGG 0.327321 4.1:+8406164 None:intergenic
CTGGCTTCTACGGGCAATGT+TGG 0.327912 4.1:-8405160 MS.gene70223:CDS
GGCTTCTACGGGCAATGTTG+GGG 0.330102 4.1:-8405158 MS.gene70223:CDS
AACCAATATATCCACTAGTT+TGG 0.339769 4.1:+8406115 None:intergenic
CTTGCGAGTTCATGTCAAAT+AGG 0.339836 4.1:-8405751 MS.gene70223:CDS
GTGGATTGCTCGTCTGATTT+GGG 0.344683 4.1:-8405220 MS.gene70223:CDS
GAGCTACGGAAATTGGGTTT+TGG 0.345895 4.1:-8407151 MS.gene70223:CDS
ATCAGAATTGGCGCCTTCTC+TGG 0.347156 4.1:-8406073 MS.gene70223:CDS
CCTTCAAATTCTTGTCAAAC+AGG 0.351866 4.1:-8405877 MS.gene70223:CDS
TCTGTTTGACATGAATTTGC+AGG 0.364697 4.1:+8405793 None:intergenic
CCTGTTTGACATGAATTTGC+TGG 0.368512 4.1:+8405919 None:intergenic
TGACAAGAATTTGAAGGGTC+TGG 0.381024 4.1:+8405883 None:intergenic
GCATGACGACTTCGATTTCA+TGG 0.381469 4.1:-8405134 MS.gene70223:CDS
TCTGGATATGAATCATTTGC+AGG 0.389690 4.1:+8405598 None:intergenic
TCTGGATATGAATCATTTGC+AGG 0.389690 4.1:+8405709 None:intergenic
TCGTTAACAGCTTGATTGTC+TGG 0.392462 4.1:+8405691 None:intergenic
TGACAAGAATTCACAGGGTC+TGG 0.397096 4.1:+8405841 None:intergenic
CCTGTGAATTCTTGTCAAAC+AGG 0.404297 4.1:-8405835 MS.gene70223:CDS
TGACATGGATTTGCAGGGTC+AGG 0.408876 4.1:+8406012 None:intergenic
CCTGTGAATCCTTGTCAAAC+AGG 0.414356 4.1:-8405964 MS.gene70223:CDS
TCGACTCCAACTTTCAGGTT+GGG 0.415732 4.1:+8405075 None:intergenic
CCTGTTTGACAAGAATTTGA+AGG 0.420779 4.1:+8405877 None:intergenic
TGACAAGGATTCACAGGGTC+TGG 0.422865 4.1:+8405970 None:intergenic
CTGTTTGACATGAATTTGTT+GGG 0.425559 4.1:+8406049 None:intergenic
TGACATGAACTCGCAAGGTC+AGG 0.427713 4.1:+8405757 None:intergenic
CCAACAAATTCATGTCAAAC+AGG 0.430400 4.1:-8406048 MS.gene70223:CDS
CCTGTTTGACATGAATTTGT+TGG 0.430797 4.1:+8406048 None:intergenic
TGAAACGAGCTACGGAAATT+GGG 0.444296 4.1:-8407157 MS.gene70223:CDS
CCTGCAAATCCATGTCAAAC+AGG 0.444856 4.1:-8406006 MS.gene70223:CDS
GGCTGACAAAGGAATTGTTC+AGG 0.445801 4.1:-8406982 MS.gene70223:intron
CCATATTGTGCACCATTCCT+AGG 0.447789 4.1:+8406261 None:intergenic
GTGTGCTAAAGTCTGCATTC+TGG 0.450394 4.1:+8405188 None:intergenic
CCAGCAAATTCATGTCAAAC+AGG 0.451371 4.1:-8405919 MS.gene70223:CDS
ATCTAGACTCTGATACGTTC+TGG 0.454030 4.1:-8405102 MS.gene70223:CDS
TGACATGAATTTGCTGGGTC+AGG 0.454766 4.1:+8405925 None:intergenic
CATACCGTGTCAATCAGAAT+TGG 0.460006 4.1:-8406085 MS.gene70223:CDS
TGAGTATAGGCTTGAAGATA+AGG 0.460176 4.1:-8407009 MS.gene70223:CDS
GAATTCACAGGGTCTGGATA+AGG 0.466095 4.1:+8405847 None:intergenic
GGATTCACAGGGTCTGGATA+AGG 0.468391 4.1:+8405976 None:intergenic
TATGAATCATTTGCAGGGTC+GGG 0.476385 4.1:+8405604 None:intergenic
CTAGGAATGGTGCACAATAT+GGG 0.477134 4.1:-8406260 MS.gene70223:CDS
TATGAATCATTTGCAGGGTC+GGG 0.478405 4.1:+8405715 None:intergenic
TCATTTGCAGGGTCGGGCGC+AGG 0.479506 4.1:+8405610 None:intergenic
ATTGGGTTATGCATGAGTAT+AGG 0.479985 4.1:-8407022 MS.gene70223:CDS
GAATTTGCAGGGTCGGAAGC+AGG 0.480953 4.1:+8405805 None:intergenic
TTCGACTCCAACTTTCAGGT+TGG 0.483370 4.1:+8405074 None:intergenic
CCTGTTTGACAAGGATTCAC+AGG 0.487590 4.1:+8405964 None:intergenic
GACCATTTAATGAGGAAGAC+TGG 0.495616 4.1:-8406236 MS.gene70223:CDS
TCGTGGTGATCGAACCGATT+GGG 0.500477 4.1:-8407039 MS.gene70223:CDS
GGCAGACCCAACCTGAAAGT+TGG 0.501795 4.1:-8405081 MS.gene70223:CDS
CCTGTTTGACAAGAATTCAC+AGG 0.507170 4.1:+8405835 None:intergenic
ACACACGGGCTGGCTTCTAC+GGG 0.510540 4.1:-8405169 MS.gene70223:CDS
AGTGCAGCAGATTCAGCAAA+AGG 0.512913 4.1:+8406192 None:intergenic
GCTTCTACGGGCAATGTTGG+GGG 0.513160 4.1:-8405157 MS.gene70223:CDS
AGACTTTAGCACACACGGGC+TGG 0.515131 4.1:-8405179 MS.gene70223:CDS
TCGTCTGATTTGGGATCTGT+TGG 0.516876 4.1:-8405211 MS.gene70223:CDS
CTGTTTGACATGAATTTGCT+GGG 0.522565 4.1:+8405920 None:intergenic
CAATTCTGATTGACACGGTA+TGG 0.524497 4.1:+8406086 None:intergenic
CTGTTTGACATGAATTTGCA+GGG 0.530109 4.1:+8405794 None:intergenic
CTCGTGGTGATCGAACCGAT+TGG 0.531457 4.1:-8407040 MS.gene70223:CDS
ATATGAATCATTTGCAGGGT+CGG 0.532792 4.1:+8405603 None:intergenic
GAATTTGTTGGGTCCAGAGA+AGG 0.534027 4.1:+8406060 None:intergenic
ATATGAATCATTTGCAGGGT+CGG 0.534812 4.1:+8405714 None:intergenic
GGATTCCTACGTAATCTGTA+AGG 0.535028 4.1:-8406307 MS.gene70223:CDS
CTGTTTGACAAGAATTTGAA+GGG 0.535613 4.1:+8405878 None:intergenic
TCATTTGCAGGGTCGGGCAA+AGG 0.536379 4.1:+8405721 None:intergenic
GACATGAACTCGCAAGGTCA+GGG 0.545876 4.1:+8405758 None:intergenic
CTGTTTGACATGGATTTGCA+GGG 0.546270 4.1:+8406007 None:intergenic
GATCAGAATCTCCAAACTAG+TGG 0.547413 4.1:-8406126 MS.gene70223:CDS
TAGGCTTGAAGATAAGGACT+TGG 0.547580 4.1:-8407003 MS.gene70223:CDS
ATACTCATGCATAACCCAAT+CGG 0.550912 4.1:+8407025 None:intergenic
CAACAGAATAATCAAACGGT+GGG 0.553418 4.1:-8407101 MS.gene70223:CDS
GAATTTGAAGGGTCTGGAGA+AGG 0.554806 4.1:+8405889 None:intergenic
TTGACATGAATTTGCAGGGT+CGG 0.556895 4.1:+8405798 None:intergenic
GAATTTGCTGGGTCAGGAGA+CGG 0.560757 4.1:+8405931 None:intergenic
GGCATAAATCCTGTTTGACA+TGG 0.562278 4.1:+8405997 None:intergenic
GACTGGAGTGATGATGAAGT+AGG 0.564465 4.1:-8406219 MS.gene70223:CDS
CTTCTACGGGCAATGTTGGG+GGG 0.567691 4.1:-8405156 MS.gene70223:CDS
GGATTTGCAGGGTCAGGAGA+AGG 0.569179 4.1:+8406018 None:intergenic
TTAGATGTCACAGGCAAACT+GGG 0.572296 4.1:+8406165 None:intergenic
GATAAGGACTTGGCTGACAA+AGG 0.573980 4.1:-8406993 MS.gene70223:CDS
GAAGGTCCTGGTCCTAGGAA+TGG 0.591114 4.1:-8406273 MS.gene70223:CDS
CTGTTTGACAAGAATTCACA+GGG 0.591836 4.1:+8405836 None:intergenic
CTGTTTGACAAGGATTCACA+GGG 0.595085 4.1:+8405965 None:intergenic
TGTTCAACAGAATAATCAAA+CGG 0.610587 4.1:-8407105 MS.gene70223:CDS
CTATTTGACATGAACTCGCA+AGG 0.614626 4.1:+8405752 None:intergenic
ACAGAACTATTAGATGTCAC+AGG 0.615324 4.1:+8406156 None:intergenic
AGACAACGGCGTATTGCCTG+AGG 0.618252 4.1:-8405521 MS.gene70223:intron
CTGGATATGAATCATTTGCA+GGG 0.618285 4.1:+8405599 None:intergenic
CTGGATATGAATCATTTGCA+GGG 0.618285 4.1:+8405710 None:intergenic
AATGCAGACTTTAGCACACA+CGG 0.626353 4.1:-8405184 MS.gene70223:CDS
ATAAATCCTCCTGTTTGACA+AGG 0.629631 4.1:+8405955 None:intergenic
AAAACCCTAATATTTCACAC+TGG 0.629779 4.1:-8407071 MS.gene70223:CDS
GCCAAGGATGAAACGAGCTA+CGG 0.632310 4.1:-8407165 None:intergenic
TGTGCACCATTCCTAGGACC+AGG 0.638891 4.1:+8406267 None:intergenic
ACATGAACTCGCAAGGTCAG+GGG 0.640717 4.1:+8405759 None:intergenic
ATATGGGAGACCATTTAATG+AGG 0.644918 4.1:-8406244 MS.gene70223:CDS
GTGAATCCTTGTCAAACAGG+AGG 0.649506 4.1:-8405961 MS.gene70223:CDS
AAATACCTTACAGATTACGT+AGG 0.675415 4.1:+8406302 None:intergenic
AACAGAATAATCAAACGGTG+GGG 0.679573 4.1:-8407100 MS.gene70223:CDS
GAACTCGCAAGGTCAGGGGA+CGG 0.679790 4.1:+8405763 None:intergenic
TCAACAGAATAATCAAACGG+TGG 0.683865 4.1:-8407102 MS.gene70223:CDS
ATGCAGACTTTAGCACACAC+GGG 0.691963 4.1:-8405183 MS.gene70223:CDS
TGTCAGGAAAACATTGCTGA+AGG 0.693858 4.1:-8405280 MS.gene70223:intron
GGCGCCAATTCTGATTGACA+CGG 0.715605 4.1:+8406081 None:intergenic
CACACTGGAAAATCACCTCG+TGG 0.720810 4.1:-8407056 MS.gene70223:CDS
CAATCGGTTCGATCACCACG+AGG 0.739524 4.1:+8407041 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTAAAAGAAAGCAA+GGG + chr4.1:8405834-8405853 None:intergenic 15.0%
!! AATAACATAATTCTATTTCA+AGG + chr4.1:8405653-8405672 None:intergenic 15.0%
!!! ATAGAATTATGTTATTTCAT+TGG - chr4.1:8405657-8405676 MS.gene70223:CDS 15.0%
!! AGTAAAAAATGCACTTTATA+AGG + chr4.1:8405710-8405729 None:intergenic 20.0%
!! CAAATAATTAAAAGAAAGCA+AGG + chr4.1:8405835-8405854 None:intergenic 20.0%
! AAAATGGCATTAACATTATG+AGG + chr4.1:8406855-8406874 None:intergenic 25.0%
! ATATGGAGATATATGTGTAT+TGG - chr4.1:8405301-8405320 MS.gene70223:intron 25.0%
! ATCGCTATGATTTAGTAAAA+TGG + chr4.1:8406871-8406890 None:intergenic 25.0%
! TGATGTTTCTTTATTATGTC+TGG - chr4.1:8406778-8406797 MS.gene70223:intron 25.0%
! TGTTCAACAGAATAATCAAA+CGG - chr4.1:8405119-8405138 MS.gene70223:CDS 25.0%
!! ATTTTCCAGTGTGAAATATT+AGG + chr4.1:8405161-8405180 None:intergenic 25.0%
!! TGTAAGGTATTTCAAAAAGA+AGG - chr4.1:8405933-8405952 MS.gene70223:CDS 25.0%
!! TTTTCCAGTGTGAAATATTA+GGG + chr4.1:8405160-8405179 None:intergenic 25.0%
!!! ATGTTTTTAACAAGTTCTCT+TGG - chr4.1:8405887-8405906 MS.gene70223:CDS 25.0%
!!! TGTTTTGTATGAGCTTTATA+TGG - chr4.1:8405284-8405303 MS.gene70223:intron 25.0%
AAAACCCTAATATTTCACAC+TGG - chr4.1:8405153-8405172 MS.gene70223:CDS 30.0%
AAAGTAGTTGTGTCCTTTAA+TGG + chr4.1:8405527-8405546 None:intergenic 30.0%
AAATACCTTACAGATTACGT+AGG + chr4.1:8405925-8405944 None:intergenic 30.0%
AACATATTCACAACGAGAAT+AGG + chr4.1:8405872-8405891 None:intergenic 30.0%
AACCAATATATCCACTAGTT+TGG + chr4.1:8406112-8406131 None:intergenic 30.0%
ACACAACTACTTTAAATGCT+AGG - chr4.1:8405534-8405553 MS.gene70223:CDS 30.0%
AGTTATCCTTCAAGAAATCA+AGG + chr4.1:8406903-8406922 None:intergenic 30.0%
CACAACTACTTTAAATGCTA+GGG - chr4.1:8405535-8405554 MS.gene70223:CDS 30.0%
CTGTTTGACAAGAATTTGAA+GGG + chr4.1:8406349-8406368 None:intergenic 30.0%
TACTTTAAATGCTAGGGTTA+GGG - chr4.1:8405541-8405560 MS.gene70223:CDS 30.0%
TATAGTCCTTGATTTCTTGA+AGG - chr4.1:8406894-8406913 MS.gene70223:intron 30.0%
TCATTAACAGTTTGATTGTC+TGG + chr4.1:8406647-8406666 None:intergenic 30.0%
TCTTATCTGTTACATTGGAA+AGG + chr4.1:8405437-8405456 None:intergenic 30.0%
! CTGTTTGACATGAATTTGTT+GGG + chr4.1:8406178-8406197 None:intergenic 30.0%
! CTTGATATTTTCGAAGACAA+CGG - chr4.1:8406689-8406708 MS.gene70223:intron 30.0%
! TCTTTCTACTTGTGTTTTTC+TGG - chr4.1:8406747-8406766 MS.gene70223:intron 30.0%
! TTGACATTATTATTGGTGTC+AGG - chr4.1:8406928-8406947 MS.gene70223:intron 30.0%
!! CTGAGTGTTGACATTATTAT+TGG - chr4.1:8406921-8406940 MS.gene70223:intron 30.0%
!!! CTCTTAACTGACTTTTTTGA+TGG - chr4.1:8406971-8406990 MS.gene70223:intron 30.0%
AAAACAGATTAGCATACCTC+AGG + chr4.1:8406722-8406741 None:intergenic 35.0%
AACAGAATAATCAAACGGTG+GGG - chr4.1:8405124-8405143 MS.gene70223:CDS 35.0%
AATGGCATTAGTGACACAAT+AGG + chr4.1:8405509-8405528 None:intergenic 35.0%
ACAGAACTATTAGATGTCAC+AGG + chr4.1:8406071-8406090 None:intergenic 35.0%
ATAAATCCTCCTGTTTGACA+AGG + chr4.1:8406272-8406291 None:intergenic 35.0%
ATACTCATGCATAACCCAAT+CGG + chr4.1:8405202-8405221 None:intergenic 35.0%
ATATGAATCATTTGCAGGGT+CGG + chr4.1:8406513-8406532 None:intergenic 35.0%
ATATGGGAGACCATTTAATG+AGG - chr4.1:8405980-8405999 MS.gene70223:CDS 35.0%
ATATTGAACTGGTGAATACG+TGG - chr4.1:8405331-8405350 MS.gene70223:intron 35.0%
ATTGGGTTATGCATGAGTAT+AGG - chr4.1:8405202-8405221 MS.gene70223:CDS 35.0%
CAACAGAATAATCAAACGGT+GGG - chr4.1:8405123-8405142 MS.gene70223:CDS 35.0%
CCAACAAATTCATGTCAAAC+AGG - chr4.1:8406176-8406195 MS.gene70223:CDS 35.0%
CCTGTTTGACAAGAATTTGA+AGG + chr4.1:8406350-8406369 None:intergenic 35.0%
CCTGTTTGACATGAATTTGT+TGG + chr4.1:8406179-8406198 None:intergenic 35.0%
CCTTCAAATTCTTGTCAAAC+AGG - chr4.1:8406347-8406366 MS.gene70223:intron 35.0%
CTACTTTAAATGCTAGGGTT+AGG - chr4.1:8405540-8405559 MS.gene70223:CDS 35.0%
CTGGATATGAATCATTTGCA+GGG + chr4.1:8406517-8406536 None:intergenic 35.0%
CTGTTTGACAAGAATTCACA+GGG + chr4.1:8406391-8406410 None:intergenic 35.0%
CTGTTTGACATGAATTTGCA+GGG + chr4.1:8406433-8406452 None:intergenic 35.0%
GTATTCACCAGTTCAATATG+TGG + chr4.1:8405330-8405349 None:intergenic 35.0%
GTATTTCAAAAAGAAGGTCC+TGG - chr4.1:8405939-8405958 MS.gene70223:CDS 35.0%
TATTCACAACGAGAATAGGA+TGG + chr4.1:8405868-8405887 None:intergenic 35.0%
TCAACAGAATAATCAAACGG+TGG - chr4.1:8405122-8405141 MS.gene70223:CDS 35.0%
TCCAATGTAACAGATAAGAC+CGG - chr4.1:8405438-8405457 MS.gene70223:intron 35.0%
TCTGGATATGAATCATTTGC+AGG + chr4.1:8406518-8406537 None:intergenic 35.0%
TCTGTTTGACATGAATTTGC+AGG + chr4.1:8406434-8406453 None:intergenic 35.0%
TGAGTATAGGCTTGAAGATA+AGG - chr4.1:8405215-8405234 MS.gene70223:CDS 35.0%
TGGAAAGGAATATATGCCAA+TGG + chr4.1:8405422-8405441 None:intergenic 35.0%
TTATATGCATTCGCAGTCAA+AGG + chr4.1:8405373-8405392 None:intergenic 35.0%
TTATTTCGACTCCAACTTTC+AGG + chr4.1:8407157-8407176 None:intergenic 35.0%
! CTCCAAACTAGTGGATATAT+TGG - chr4.1:8406107-8406126 MS.gene70223:CDS 35.0%
! CTGTTTGACATGAATTTGCT+GGG + chr4.1:8406307-8406326 None:intergenic 35.0%
! TGTGCATCAAAAGCATATTC+CGG + chr4.1:8405460-8405479 None:intergenic 35.0%
! TGTGTCACTAATGCCATTAA+AGG - chr4.1:8405511-8405530 MS.gene70223:intron 35.0%
!! CATTGGTTGTTTCTAATCAC+TGG - chr4.1:8405674-8405693 MS.gene70223:CDS 35.0%
!! TTCATGATAGTTTTGCATGC+AGG - chr4.1:8405622-8405641 MS.gene70223:CDS 35.0%
!!! AACTGACTTTTTTGATGGCT+TGG - chr4.1:8406976-8406995 MS.gene70223:intron 35.0%
AATGCAGACTTTAGCACACA+CGG - chr4.1:8407040-8407059 MS.gene70223:CDS 40.0%
ACAAGTTCTCTTGGTATGAC+AGG - chr4.1:8405896-8405915 MS.gene70223:CDS 40.0%
ATCTAGACTCTGATACGTTC+TGG - chr4.1:8407122-8407141 MS.gene70223:CDS 40.0%
ATGAAACGAGCTACGGAAAT+TGG - chr4.1:8405066-8405085 MS.gene70223:CDS 40.0%
ATTAGATGTCACAGGCAAAC+TGG + chr4.1:8406063-8406082 None:intergenic 40.0%
CAATTCTGATTGACACGGTA+TGG + chr4.1:8406141-8406160 None:intergenic 40.0%
CATACCGTGTCAATCAGAAT+TGG - chr4.1:8406139-8406158 MS.gene70223:CDS 40.0%
CCAGCAAATTCATGTCAAAC+AGG - chr4.1:8406305-8406324 MS.gene70223:CDS 40.0%
CCTGTGAATTCTTGTCAAAC+AGG - chr4.1:8406389-8406408 MS.gene70223:intron 40.0%
CCTGTTTGACAAGAATTCAC+AGG + chr4.1:8406392-8406411 None:intergenic 40.0%
CCTGTTTGACATGAATTTGC+TGG + chr4.1:8406308-8406327 None:intergenic 40.0%
CTAGGAATGGTGCACAATAT+GGG - chr4.1:8405964-8405983 MS.gene70223:CDS 40.0%
CTATTTGACATGAACTCGCA+AGG + chr4.1:8406475-8406494 None:intergenic 40.0%
CTCCAGTCTTCCTCATTAAA+TGG + chr4.1:8405993-8406012 None:intergenic 40.0%
CTGTTTGACAAGGATTCACA+GGG + chr4.1:8406262-8406281 None:intergenic 40.0%
CTGTTTGACATGGATTTGCA+GGG + chr4.1:8406220-8406239 None:intergenic 40.0%
CTTGCGAGTTCATGTCAAAT+AGG - chr4.1:8406473-8406492 MS.gene70223:intron 40.0%
GACCATTTAATGAGGAAGAC+TGG - chr4.1:8405988-8406007 MS.gene70223:CDS 40.0%
GATCAGAATCTCCAAACTAG+TGG - chr4.1:8406098-8406117 MS.gene70223:CDS 40.0%
GGATTCCTACGTAATCTGTA+AGG - chr4.1:8405917-8405936 MS.gene70223:CDS 40.0%
GGCATAAATCCTGTTTGACA+TGG + chr4.1:8406230-8406249 None:intergenic 40.0%
GTATCAAGACTGCGAGTAAA+AGG + chr4.1:8405400-8405419 None:intergenic 40.0%
TAGGCTTGAAGATAAGGACT+TGG - chr4.1:8405221-8405240 MS.gene70223:CDS 40.0%
TATGAATCATTTGCAGGGTC+GGG + chr4.1:8406512-8406531 None:intergenic 40.0%
TCGTTAACAGCTTGATTGTC+TGG + chr4.1:8406536-8406555 None:intergenic 40.0%
TGAAACGAGCTACGGAAATT+GGG - chr4.1:8405067-8405086 MS.gene70223:CDS 40.0%
TGACAAGAATTTGAAGGGTC+TGG + chr4.1:8406344-8406363 None:intergenic 40.0%
TGTCAGGAAAACATTGCTGA+AGG - chr4.1:8406944-8406963 MS.gene70223:intron 40.0%
TTAGATGTCACAGGCAAACT+GGG + chr4.1:8406062-8406081 None:intergenic 40.0%
TTGACATGAATTTGCAGGGT+CGG + chr4.1:8406429-8406448 None:intergenic 40.0%
TTGGTTGCCACATATTGAAC+TGG - chr4.1:8405320-8405339 MS.gene70223:intron 40.0%
! TCCGGTCTTATCTGTTACAT+TGG + chr4.1:8405442-8405461 None:intergenic 40.0%
!!! ATTGGGTTTTGGAAAGCTAC+TGG - chr4.1:8405084-8405103 MS.gene70223:CDS 40.0%
AAAAAGAAGGTCCTGGTCCT+AGG - chr4.1:8405946-8405965 MS.gene70223:CDS 45.0%
ACTCGCAGTCTTGATACCAT+TGG - chr4.1:8405403-8405422 MS.gene70223:intron 45.0%
AGGAGACAATGCAAACTGCA+GGG + chr4.1:8406835-8406854 None:intergenic 45.0%
AGTGCAGCAGATTCAGCAAA+AGG + chr4.1:8406035-8406054 None:intergenic 45.0%
ATCCTTCGAAGGGTGAAATG+TGG - chr4.1:8405566-8405585 MS.gene70223:CDS 45.0%
ATGCAGACTTTAGCACACAC+GGG - chr4.1:8407041-8407060 MS.gene70223:CDS 45.0%
CCATATTGTGCACCATTCCT+AGG + chr4.1:8405966-8405985 None:intergenic 45.0%
CCTAGGAATGGTGCACAATA+TGG - chr4.1:8405963-8405982 MS.gene70223:CDS 45.0%
CCTGCAAATCCATGTCAAAC+AGG - chr4.1:8406218-8406237 MS.gene70223:CDS 45.0%
CCTGTGAATCCTTGTCAAAC+AGG - chr4.1:8406260-8406279 MS.gene70223:CDS 45.0%
CCTGTTTGACAAGGATTCAC+AGG + chr4.1:8406263-8406282 None:intergenic 45.0%
CCTGTTTGACATGGATTTGC+AGG + chr4.1:8406221-8406240 None:intergenic 45.0%
GAATTCACAGGGTCTGGATA+AGG + chr4.1:8406380-8406399 None:intergenic 45.0%
GAATTTGAAGGGTCTGGAGA+AGG + chr4.1:8406338-8406357 None:intergenic 45.0%
GATAAGGACTTGGCTGACAA+AGG - chr4.1:8405231-8405250 MS.gene70223:CDS 45.0%
GCATGACGACTTCGATTTCA+TGG - chr4.1:8407090-8407109 MS.gene70223:CDS 45.0%
GGCATTAGTGACACAATAGG+TGG + chr4.1:8405506-8405525 None:intergenic 45.0%
GGCTGACAAAGGAATTGTTC+AGG - chr4.1:8405242-8405261 MS.gene70223:CDS 45.0%
GGTTAGGGTTATCCTTCGAA+GGG - chr4.1:8405556-8405575 MS.gene70223:CDS 45.0%
GTGAATCCTTGTCAAACAGG+AGG - chr4.1:8406263-8406282 MS.gene70223:CDS 45.0%
GTGTGCTAAAGTCTGCATTC+TGG + chr4.1:8407039-8407058 None:intergenic 45.0%
TGACAAGAATTCACAGGGTC+TGG + chr4.1:8406386-8406405 None:intergenic 45.0%
! GACTGGAGTGATGATGAAGT+AGG - chr4.1:8406005-8406024 MS.gene70223:CDS 45.0%
! GAGCTACGGAAATTGGGTTT+TGG - chr4.1:8405073-8405092 MS.gene70223:CDS 45.0%
! GTGGATTGCTCGTCTGATTT+GGG - chr4.1:8407004-8407023 MS.gene70223:CDS 45.0%
! TTCGACTCCAACTTTCAGGT+TGG + chr4.1:8407153-8407172 None:intergenic 45.0%
!! GAATTTGTTGGGTCCAGAGA+AGG + chr4.1:8406167-8406186 None:intergenic 45.0%
!! TCGACTCCAACTTTCAGGTT+GGG + chr4.1:8407152-8407171 None:intergenic 45.0%
!! TCGTCTGATTTGGGATCTGT+TGG - chr4.1:8407013-8407032 MS.gene70223:CDS 45.0%
!! TGACATGAATTTGCTGGGTC+AGG + chr4.1:8406302-8406321 None:intergenic 45.0%
!! TTTTGATGGCTTGGAAGACG+TGG - chr4.1:8406985-8407004 MS.gene70223:CDS 45.0%
!!! GTTTTGGAAAGCTACTGGTC+AGG - chr4.1:8405089-8405108 MS.gene70223:CDS 45.0%
ACATGAACTCGCAAGGTCAG+GGG + chr4.1:8406468-8406487 None:intergenic 50.0%
ATCAGAATTGGCGCCTTCTC+TGG - chr4.1:8406151-8406170 MS.gene70223:CDS 50.0%
CACACTGGAAAATCACCTCG+TGG - chr4.1:8405168-8405187 MS.gene70223:CDS 50.0%
CTCCACATTTCACCCTTCGA+AGG + chr4.1:8405571-8405590 None:intergenic 50.0%
GACATGAACTCGCAAGGTCA+GGG + chr4.1:8406469-8406488 None:intergenic 50.0%
GAGGAGACAATGCAAACTGC+AGG + chr4.1:8406836-8406855 None:intergenic 50.0%
GGATTCACAGGGTCTGGATA+AGG + chr4.1:8406251-8406270 None:intergenic 50.0%
GGCGCCAATTCTGATTGACA+CGG + chr4.1:8406146-8406165 None:intergenic 50.0%
GGGTTAGGGTTATCCTTCGA+AGG - chr4.1:8405555-8405574 MS.gene70223:CDS 50.0%
TCGTGGTGATCGAACCGATT+GGG - chr4.1:8405185-8405204 MS.gene70223:CDS 50.0%
TGACAAGGATTCACAGGGTC+TGG + chr4.1:8406257-8406276 None:intergenic 50.0%
TGACATGAACTCGCAAGGTC+AGG + chr4.1:8406470-8406489 None:intergenic 50.0%
TGACATGGATTTGCAGGGTC+AGG + chr4.1:8406215-8406234 None:intergenic 50.0%
TGGCTTCTACGGGCAATGTT+GGG - chr4.1:8407065-8407084 MS.gene70223:CDS 50.0%
! CGTGGATTGCTCGTCTGATT+TGG - chr4.1:8407003-8407022 MS.gene70223:CDS 50.0%
!! GAATTTGCTGGGTCAGGAGA+CGG + chr4.1:8406296-8406315 None:intergenic 50.0%
AGACAACGGCGTATTGCCTG+AGG - chr4.1:8406703-8406722 MS.gene70223:intron 55.0%
AGACTTTAGCACACACGGGC+TGG - chr4.1:8407045-8407064 MS.gene70223:CDS 55.0%
CTCGTGGTGATCGAACCGAT+TGG - chr4.1:8405184-8405203 MS.gene70223:CDS 55.0%
CTGGCTTCTACGGGCAATGT+TGG - chr4.1:8407064-8407083 MS.gene70223:CDS 55.0%
CTTCTACGGGCAATGTTGGG+GGG - chr4.1:8407068-8407087 MS.gene70223:CDS 55.0%
GAAGGTCCTGGTCCTAGGAA+TGG - chr4.1:8405951-8405970 MS.gene70223:CDS 55.0%
GAATTTGCAGGGTCGGAAGC+AGG + chr4.1:8406422-8406441 None:intergenic 55.0%
GCTTCTACGGGCAATGTTGG+GGG - chr4.1:8407067-8407086 MS.gene70223:CDS 55.0%
GGATTTGCAGGGTCAGGAGA+AGG + chr4.1:8406209-8406228 None:intergenic 55.0%
GGCAGACCCAACCTGAAAGT+TGG - chr4.1:8407143-8407162 MS.gene70223:CDS 55.0%
GGCTTCTACGGGCAATGTTG+GGG - chr4.1:8407066-8407085 MS.gene70223:CDS 55.0%
TCATTTGCAGGGTCGGGCAA+AGG + chr4.1:8406506-8406525 None:intergenic 55.0%
TGTGCACCATTCCTAGGACC+AGG + chr4.1:8405960-8405979 None:intergenic 55.0%
!! CAATCGGTTCGATCACCACG+AGG + chr4.1:8405186-8405205 None:intergenic 55.0%
GAACTCGCAAGGTCAGGGGA+CGG + chr4.1:8406464-8406483 None:intergenic 60.0%
!! ACACACGGGCTGGCTTCTAC+GGG - chr4.1:8407055-8407074 MS.gene70223:CDS 60.0%
!! CACACACGGGCTGGCTTCTA+CGG - chr4.1:8407054-8407073 MS.gene70223:CDS 60.0%
TCATTTGCAGGGTCGGGCGC+AGG + chr4.1:8406617-8406636 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 8405066 8407180 8405066 ID=MS.gene70223
chr4.1 mRNA 8405066 8407180 8405066 ID=MS.gene70223.t1;Parent=MS.gene70223
chr4.1 exon 8406983 8407180 8406983 ID=MS.gene70223.t1.exon1;Parent=MS.gene70223.t1
chr4.1 CDS 8406983 8407180 8406983 ID=cds.MS.gene70223.t1;Parent=MS.gene70223.t1
chr4.1 exon 8405522 8406328 8405522 ID=MS.gene70223.t1.exon2;Parent=MS.gene70223.t1
chr4.1 CDS 8405522 8406328 8405522 ID=cds.MS.gene70223.t1;Parent=MS.gene70223.t1
chr4.1 exon 8405066 8405296 8405066 ID=MS.gene70223.t1.exon3;Parent=MS.gene70223.t1
chr4.1 CDS 8405066 8405296 8405066 ID=cds.MS.gene70223.t1;Parent=MS.gene70223.t1
Gene Sequence

>MS.gene70223

ATGAAACGAGCTACGGAAATTGGGTTTTGGAAAGCTACTGGTCAGGATCGAGCTGTTCAACAGAATAATCAAACGGTGGGGTTGATTAAAACCCTAATATTTCACACTGGAAAATCACCTCGTGGTGATCGAACCGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACTTGGCTGACAAAGGAATTGTTCAGGTAGTCATTTCTTTCTTAGTTGTTTTGTATGAGCTTTATATGGAGATATATGTGTATTGGTTGCCACATATTGAACTGGTGAATACGTGGCAGATTCGTAGTTGTGCCTTTGACTGCGAATGCATATAAGATACCTTTTACTCGCAGTCTTGATACCATTGGCATATATTCCTTTCCAATGTAACAGATAAGACCGGAATATGCTTTTGATGCACAAATTTACATTTGTATTCATGTCTCCACCTATTGTGTCACTAATGCCATTAAAGGACACAACTACTTTAAATGCTAGGGTTAGGGTTATCCTTCGAAGGGTGAAATGTGGAGTTCTAACTTCTAATAATTGATTACAGTGTAGTTCATGATAGTTTTGCATGCAGGATAATCCTTGAAATAGAATTATGTTATTTCATTGGTTGTTTCTAATCACTGGTTTTACATTACCTTATAAAGTGCATTTTTTACTTTCGAATAGTTGAATTCTTGAAATAGAATTATGCTATTGCATGTTTTGTTTGACTAACACTCAAAATGAGATTTGCTGTTTTAACACGACAAAGTTAGTATCCCTTGCTTTCTTTTAATTATTTGATAGTTTTTTCCATCCTATTCTCGTTGTGAATATGTTTTTAACAAGTTCTCTTGGTATGACAGGATTCCTACGTAATCTGTAAGGTATTTCAAAAAGAAGGTCCTGGTCCTAGGAATGGTGCACAATATGGGAGACCATTTAATGAGGAAGACTGGAGTGATGATGAAGTAGGAATACCTTTTGCTGAATCTGCTGCACTAGTTCCCAGTTTGCCTGTGACATCTAATAGTTCTGTTCTAAATGATCAGAATCTCCAAACTAGTGGATATATTGGTTCGATATCCATACCGTGTCAATCAGAATTGGCGCCTTCTCTGGACCCAACAAATTCATGTCAAACAGGATTGACACCTTCTCCTGACCCTGCAAATCCATGTCAAACAGGATTTATGCCTTATCCAGACCCTGTGAATCCTTGTCAAACAGGAGGATTTATGCCGTCTCCTGACCCAGCAAATTCATGTCAAACAGGATTGACGCCTTCTCCAGACCCTTCAAATTCTTGTCAAACAGGATTTATGCCTTATCCAGACCCTGTGAATTCTTGTCAAACAGGATTTATGCCTGCTTCCGACCCTGCAAATTCATGTCAAACAGAATTTATGCCGTCCCCTGACCTTGCGAGTTCATGTCAAATAGGATTGATGCCTTTGCCCGACCCTGCAAATGATTCATATCCAGACAATCAAGCTGTTAACGACGATGATGATGATGATATTCTAGCAATGCTTGATATTTTCAAAGACAACAGCGTATTGCCTGCGCCCGACCCTGCAAATGATTCATATCCAGACAATCAAACTGTTAATGATGATGATGATATTCTAGCAATGCTTGATATTTTCGAAGACAACGGCGTATTGCCTGAGGTATGCTAATCTGTTTTTTTCTTCTTTCTACTTGTGTTTTTCTGGAAACAGTGTGATGTTTCTTTATTATGTCTGGTTTTAGTATTTGTAGACTTGTTTTATCTATTCCCTGCAGTTTGCATTGTCTCCTCATAATGTTAATGCCATTTTACTAAATCATAGCGATGTATATAGTCCTTGATTTCTTGAAGGATAACTGAGTGTTGACATTATTATTGGTGTCAGGAAAACATTGCTGAAGGTGCACTCTTAACTGACTTTTTTGATGGCTTGGAAGACGTGGATTGCTCGTCTGATTTGGGATCTGTTGGCCAGAATGCAGACTTTAGCACACACGGGCTGGCTTCTACGGGCAATGTTGGGGGGCATGACGACTTCGATTTCATGGAGTTGATTGATCTAGACTCTGATACGTTCTGGCAGACCCAACCTGAAAGTTGGAGTCGAAATAAATAA
Protein sequence

>MS.gene70223.t1

MKRATEIGFWKATGQDRAVQQNNQTVGLIKTLIFHTGKSPRGDRTDWVMHEYRLEDKDLADKGIVQDSYVICKVFQKEGPGPRNGAQYGRPFNEEDWSDDEVGIPFAESAALVPSLPVTSNSSVLNDQNLQTSGYIGSISIPCQSELAPSLDPTNSCQTGLTPSPDPANPCQTGFMPYPDPVNPCQTGGFMPSPDPANSCQTGLTPSPDPSNSCQTGFMPYPDPVNSCQTGFMPASDPANSCQTEFMPSPDLASSCQIGLMPLPDPANDSYPDNQAVNDDDDDDILAMLDIFKDNSVLPAPDPANDSYPDNQTVNDDDDILAMLDIFEDNGVLPEENIAEGALLTDFFDGLEDVDCSSDLGSVGQNADFSTHGLASTGNVGGHDDFDFMELIDLDSDTFWQTQPESWSRNK