AlfalfaGEDB | MS.gene70545

M. sativa cultivar XinJiangDaYe / MS.gene70545

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70545.t1	XP_003611890.1	95.1	531	25	1	1	530	107	637	1.60E-263	918.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70545.t1	O64825	44.1	537	265	8	2	531	102	610	2.7e-105	384.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70545.t1	G7KAT5	95.1	531	25	1	1	530	107	637	1.2e-263	918.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene70545	0.810493	1.12E-50	-1.69E-46
MS.gene054892	MS.gene70545	0.805869	1.08E-49	-1.69E-46
MS.gene054893	MS.gene70545	0.808017	3.81E-50	-1.69E-46
MS.gene057622	MS.gene70545	0.821566	3.77E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70545.t1	MTR_5g019050	94.350	531	29	1	1	530	107	637	0.0	941
MS.gene70545.t1	MTR_5g085790	43.525	556	289	10	1	536	99	649	5.77e-137	412
MS.gene70545.t1	MTR_3g080170	42.308	546	294	13	1	531	102	641	2.01e-131	397
MS.gene70545.t1	MTR_1g021845	39.360	531	283	12	2	518	105	610	2.52e-120	368
MS.gene70545.t1	MTR_5g019040	32.860	563	275	15	1	531	95	586	5.25e-84	272
MS.gene70545.t1	MTR_5g042440	32.847	548	315	14	2	526	100	617	4.93e-82	268
MS.gene70545.t1	MTR_7g079320	31.949	554	336	15	2	531	102	638	3.75e-77	256
MS.gene70545.t1	MTR_7g029650	31.720	558	338	16	2	520	86	639	1.52e-76	254
MS.gene70545.t1	MTR_7g079350	31.698	530	328	13	2	514	116	628	1.18e-75	254
MS.gene70545.t1	MTR_8g078300	31.091	550	305	15	1	534	87	578	1.33e-66	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70545.t1	AT2G23770	42.458	537	274	9	2	531	102	610	3.22e-139	416
MS.gene70545.t1	AT2G33580	41.463	574	280	15	1	537	105	659	2.72e-124	379
MS.gene70545.t1	AT3G21630	31.588	554	318	17	2	530	85	602	8.78e-67	227
MS.gene70545.t1	AT3G01840	28.722	571	310	19	1	520	93	617	4.89e-56	199
MS.gene70545.t1	AT1G51940	36.392	316	175	9	237	532	328	637	3.51e-53	191
MS.gene70545.t1	AT2G05940	32.637	383	213	11	161	519	4	365	3.52e-48	174
MS.gene70545.t1	AT4G02010	30.046	436	254	13	107	515	241	652	1.61e-47	176
MS.gene70545.t1	AT1G61860	32.295	353	192	12	183	518	37	359	5.81e-47	169
MS.gene70545.t1	AT3G07070	33.038	339	198	11	195	519	31	354	3.65e-46	167
MS.gene70545.t1	AT3G58690	34.146	328	182	10	235	535	72	392	1.16e-44	162

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Find 76 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGTCTGAGATTATATG+TGG	0.643861	5.1:-11071852	MS.gene70545:CDS
AAGAAGAAGAAGATGAAGGT+GGG	0.508456	5.1:+11072072	None:intergenic
AAGCAAAGGTTGCAAATTTA+AGG	0.146239	5.1:-11071383	MS.gene70545:CDS
AAGCTTGATGTGTATGCATT+TGG	0.462731	5.1:-11071243	MS.gene70545:CDS
AAGTGGTGATGAGAAGTTGA+AGG	0.524555	5.1:-11071118	MS.gene70545:CDS
AAGTGTATTAGCTTCAAGAG+TGG	0.640165	5.1:+11072199	None:intergenic
AATCCTGGTGATGTATATCC+TGG	0.541264	5.1:-11072365	MS.gene70545:CDS
ACAAACATAGCAAGTTCAAA+TGG	0.452941	5.1:+11071063	None:intergenic
ACCGGAAAGGCGAATAACAT+TGG	0.544674	5.1:+11071644	None:intergenic
ACTTGGGTTTATGTTATTGT+TGG	0.381632	5.1:-11072026	MS.gene70545:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAAAGGTTGCAAATTTA+AGG	-	chr5.1:11072062-11072081	MS.gene70545:CDS	30.0%
ACAAACATAGCAAGTTCAAA+TGG	+	chr5.1:11072385-11072404	None:intergenic	30.0%
ACTTGGGTTTATGTTATTGT+TGG	-	chr5.1:11071419-11071438	MS.gene70545:CDS	30.0%
ATGCATGAAAATCATAATCC+TGG	-	chr5.1:11071065-11071084	MS.gene70545:CDS	30.0%
ATTATTACAGGAAAAGAGGT+TGG	-	chr5.1:11072241-11072260	MS.gene70545:CDS	30.0%
ATTGCATTAGATGTAGCAAT+AGG	-	chr5.1:11071953-11071972	MS.gene70545:CDS	30.0%
CATTGAATTCTTCATTCAGT+TGG	-	chr5.1:11072488-11072507	MS.gene70545:CDS	30.0%
CTAATGGAACATTAAGTGAT+TGG	-	chr5.1:11071870-11071889	MS.gene70545:CDS	30.0%
GCTTTCATTTCCTTCAAAAA+GGG	-	chr5.1:11071488-11071507	MS.gene70545:CDS	30.0%
GGAAATTATTACAGGAAAAG+AGG	-	chr5.1:11072237-11072256	MS.gene70545:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	11070927	11072540	11070927	ID=MS.gene70545
chr5.1	mRNA	11070927	11072540	11070927	ID=MS.gene70545.t1;Parent=MS.gene70545
chr5.1	exon	11070927	11072540	11070927	ID=MS.gene70545.t1.exon1;Parent=MS.gene70545.t1
chr5.1	CDS	11070927	11072540	11070927	ID=cds.MS.gene70545.t1;Parent=MS.gene70545.t1

Gene Sequence

>MS.gene70545

ATGGTAATCGTTCCTGTCAATTGTTCTTGTTCTGGTAACTATTATCAAGCAAACACATCCTATGTTTTTCAAAACACAGACACTTATTTTATAGTTGCTAACAACACTTTTGAAGGTCTTTCAACATGTCAAGCTTTGATGCATGAAAATCATAATCCTGGTGATGTATATCCTGGTAGAAAACTACTTGTTCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACTGAGAAAAACATAAAGTATCTTTTGAGTTATTTGGTTGATTGGGGTGATTCTGTTTCATTCATTAGTGATAAATTTGGTGTTAACTTTAGAACCACTCTTGAAGCTAATACACTTTCTTTAACACAATCTATGATTTATCCTTTTACAACACTTCTTGTTCCTCTTTTTGATAAGCCTTCAAGTTCTCAAATTCAAACACATCATTCTCCTTCATCATCCCCACCTTCATCTTCTTCTTCTTCGACCGATAAAAAATCGAAAAAAACTTGGGTTTATGTTATTGTTGGAGTACTTGGAGGAGTTGTAATTGTAGTTTTTATATTAGTTCTATATGCTTTCATTTCCTTCAAAAAGGGTAAAAAGAAAAATGATTTTTTGAGTGTTTCTGAAAGTACTATTTTTGAGGAAAAAGAGAAGCCAGTGAAGGAAGAAGATGAAAAATTGTCTGAGATTATATGTGGTATAGCTCAATCTTTCAAAGTGTATGATTTTGAGGAAATTAAGGTTGCAACTGATAATTTTAGTCCAAGCTGTCGGATTAAAGGAACTGTTTATCGCGCTGTTATAAAAGGCGATTTGGCTGCGATTAAGAAAACAGAAGGAGATGTTTCAAAAGAGATACAAATTCTTAACAAAGTTAATCATTCCAATGTTATTCGCCTTTCCGGTGTTAGCTTCAATGAAGGACATTGGTACCTTGTTTATGAGTATGCTGCTAATGGAACATTAAGTGATTGGTTATTTTCTAACAACAAAATGGATGATGGAAATTTTCTGAGTTGGATTCAGAGAATAAAGATTGCATTAGATGTAGCAATAGGAGTTGAATATCTTCATAGTTTCACTTCTCCTCCACATATTCATAAGGATCTAAAGTGTAGTAACATTCTTCTTGATAGTGATTTTAAAGCAAAGGTTGCAAATTTAAGGCATGTAAGGTGTGTGGAAGGAGTTGAAAATGATGAAGAATTTGTTGCTACAAGGCATATTGTTGGGACAAGAGGTTACATGGCACCAGAGTATTTGGAAAATGGTATTGTTTCTACAAAGCTTGATGTGTATGCATTTGGTGTGTTGATGTTGGAAATTATTACAGGAAAAGAGGTTGGTTTTATTTTATCAGAAGATAATGAGAATTTGTTGGATGTTTTGAGTGGAATACTTGGTGAGGAAAGTGGTGATGAGAAGTTGAAGGAAATTATGGATCCTTCATTGCAAGGAAATTATCCATTTGAACTTGCTATGTTTGTGATTGAAATTATTGAGAATTGTTTGAGTAAGGATCCAGCAAATCGTCCTGCTATGGATGAAATTGTGCCAGTTTTGTCAAGAACATTGAATTCTTCATTCAGTTGGGAAATGTCATTGAATGTTCCTAGAAACTAA

Protein sequence

>MS.gene70545.t1

MVIVPVNCSCSGNYYQANTSYVFQNTDTYFIVANNTFEGLSTCQALMHENHNPGDVYPGRKLLVPLRCACPTKNQTEKNIKYLLSYLVDWGDSVSFISDKFGVNFRTTLEANTLSLTQSMIYPFTTLLVPLFDKPSSSQIQTHHSPSSSPPSSSSSSTDKKSKKTWVYVIVGVLGGVVIVVFILVLYAFISFKKGKKKNDFLSVSESTIFEEKEKPVKEEDEKLSEIICGIAQSFKVYDFEEIKVATDNFSPSCRIKGTVYRAVIKGDLAAIKKTEGDVSKEIQILNKVNHSNVIRLSGVSFNEGHWYLVYEYAANGTLSDWLFSNNKMDDGNFLSWIQRIKIALDVAIGVEYLHSFTSPPHIHKDLKCSNILLDSDFKAKVANLRHVRCVEGVENDEEFVATRHIVGTRGYMAPEYLENGIVSTKLDVYAFGVLMLEIITGKEVGFILSEDNENLLDVLSGILGEESGDEKLKEIMDPSLQGNYPFELAMFVIEIIENCLSKDPANRPAMDEIVPVLSRTLNSSFSWEMSLNVPRN