Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70585.t1 | XP_013461057.1 | 94 | 133 | 8 | 0 | 1 | 133 | 1 | 133 | 4.70E-45 | 190.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70585.t1 | A0A072V051 | 94.0 | 133 | 8 | 0 | 1 | 133 | 1 | 133 | 3.4e-45 | 190.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052190 | MS.gene70585 | -0.800329 | 1.52E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene70585 | -0.815488 | 9.01E-52 | -1.69E-46 |
| MS.gene057156 | MS.gene70585 | 0.816359 | 5.76E-52 | -1.69E-46 |
| MS.gene057639 | MS.gene70585 | -0.800971 | 1.12E-48 | -1.69E-46 |
| MS.gene060137 | MS.gene70585 | 0.805144 | 1.54E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene70585 | -0.804542 | 2.05E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene70585 | -0.805913 | 1.06E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene70585 | -0.812759 | 3.61E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70585.t1 | MTR_3g078610 | 92.481 | 133 | 10 | 0 | 1 | 133 | 1 | 133 | 1.54e-68 | 206 |
| MS.gene70585.t1 | MTR_3g078610 | 91.791 | 134 | 10 | 1 | 1 | 133 | 1 | 134 | 9.46e-67 | 202 |
| MS.gene70585.t1 | MTR_3g083530 | 43.333 | 90 | 47 | 1 | 23 | 112 | 14 | 99 | 1.30e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGGAGGTTGTTGAGAT+TGG | 0.306031 | 3.1:-64400309 | None:intergenic |
| CGGAGATGACGGTGGGGAAG+GGG | 0.343868 | 3.1:-64400252 | None:intergenic |
| CGGTGGGGAAGGGGAGGAAG+AGG | 0.363507 | 3.1:-64400243 | None:intergenic |
| CCAATTCTTCGCATCCTCAT+TGG | 0.380648 | 3.1:+64400183 | MS.gene70585:CDS |
| CCAATGAGGATGCGAAGAAT+TGG | 0.384540 | 3.1:-64400183 | None:intergenic |
| TGGGGAAGGGGAGGAAGAGG+TGG | 0.403774 | 3.1:-64400240 | None:intergenic |
| ACCCGCGGATTCACTTTCTC+TGG | 0.404945 | 3.1:+64400353 | MS.gene70585:CDS |
| GTTGAGATTGGAGGCGGTAG+TGG | 0.410912 | 3.1:-64400297 | None:intergenic |
| GTTGATATCAAAAGGTTAGT+TGG | 0.430774 | 3.1:+64402450 | MS.gene70585:CDS |
| TCGGAGATGACGGTGGGGAA+GGG | 0.440083 | 3.1:-64400253 | None:intergenic |
| AGATGACGGTGGGGAAGGGG+AGG | 0.442459 | 3.1:-64400249 | None:intergenic |
| ATCGGAGATGACGGTGGGGA+AGG | 0.452043 | 3.1:-64400254 | None:intergenic |
| GGCGGTAGTGGTGGAGTTTG+CGG | 0.457087 | 3.1:-64400285 | None:intergenic |
| AGTGGTGGAGTTTGCGGCGG+CGG | 0.474562 | 3.1:-64400279 | None:intergenic |
| TATCACTCTCTGGAAGGAAC+AGG | 0.475953 | 3.1:+64400771 | MS.gene70585:CDS |
| GAGTTTGCGGCGGCGGAGAT+CGG | 0.476075 | 3.1:-64400272 | None:intergenic |
| CCGGAGAGGTTGATATCAAA+AGG | 0.484593 | 3.1:+64402442 | MS.gene70585:CDS |
| AACAGGAAAAGCTGCTATCA+AGG | 0.492631 | 3.1:+64400788 | MS.gene70585:CDS |
| GATTTCAGGTCGCGCGTATG+AGG | 0.501849 | 3.1:+64400635 | MS.gene70585:intron |
| TCTTAGACAATATCACTCTC+TGG | 0.504023 | 3.1:+64400761 | MS.gene70585:CDS |
| CGGAGATCGGAGATGACGGT+GGG | 0.504404 | 3.1:-64400259 | None:intergenic |
| GAGGTTGTTGAGATTGGAGG+CGG | 0.509019 | 3.1:-64400303 | None:intergenic |
| GTTCCACCTCACACCGTAGC+TGG | 0.515798 | 3.1:+64402399 | MS.gene70585:CDS |
| GAGGAGGTTGTTGAGATTGG+AGG | 0.537669 | 3.1:-64400306 | None:intergenic |
| CTCTCCGGCAGTAGCAGCTG+TGG | 0.539981 | 3.1:-64402427 | None:intergenic |
| TATTCCACAGCTGCTACTGC+CGG | 0.544998 | 3.1:+64402423 | MS.gene70585:CDS |
| AGCTGTGGAATAACCAGCTA+CGG | 0.568613 | 3.1:-64402412 | None:intergenic |
| GGAAATTTGATTGAAAATCG+AGG | 0.584509 | 3.1:+64400502 | MS.gene70585:CDS |
| ACAACCTCCTCACTGCTCCA+TGG | 0.587232 | 3.1:+64400318 | MS.gene70585:CDS |
| GAGATTGGAGGCGGTAGTGG+TGG | 0.591023 | 3.1:-64400294 | None:intergenic |
| CACAGCTGCTACTGCCGGAG+AGG | 0.592793 | 3.1:+64402428 | MS.gene70585:CDS |
| ATCCAGAGAAAGTGAATCCG+CGG | 0.593591 | 3.1:-64400355 | None:intergenic |
| CGGGTTTGAGAAGCGGACCA+TGG | 0.595025 | 3.1:-64400335 | None:intergenic |
| GCGGCGGAGATCGGAGATGA+CGG | 0.602075 | 3.1:-64400263 | None:intergenic |
| GCGGAGATCGGAGATGACGG+TGG | 0.606744 | 3.1:-64400260 | None:intergenic |
| TATCACTGAAACTCAGCAAG+AGG | 0.610373 | 3.1:+64400156 | MS.gene70585:CDS |
| GAATCCGCGGGTTTGAGAAG+CGG | 0.621886 | 3.1:-64400342 | None:intergenic |
| AGACAATATCACTCTCTGGA+AGG | 0.632187 | 3.1:+64400765 | MS.gene70585:CDS |
| TAACCAGCTACGGTGTGAGG+TGG | 0.634223 | 3.1:-64402402 | None:intergenic |
| TCCAGAGAAAGTGAATCCGC+GGG | 0.634974 | 3.1:-64400354 | None:intergenic |
| GGAGATCGGAGATGACGGTG+GGG | 0.638493 | 3.1:-64400258 | None:intergenic |
| TTTGATGAGATTCTCCAATG+AGG | 0.640483 | 3.1:-64400197 | None:intergenic |
| CGGACCATGGAGCAGTGAGG+AGG | 0.665229 | 3.1:-64400322 | None:intergenic |
| TGGTCCGCTTCTCAAACCCG+CGG | 0.679979 | 3.1:+64400338 | MS.gene70585:CDS |
| GAATAACCAGCTACGGTGTG+AGG | 0.680821 | 3.1:-64402405 | None:intergenic |
| AAGCGGACCATGGAGCAGTG+AGG | 0.702686 | 3.1:-64400325 | None:intergenic |
| GGTAGTGGTGGAGTTTGCGG+CGG | 0.704581 | 3.1:-64400282 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAGTATATAAAATTAATT+TGG | + | chr3.1:64401098-64401117 | MS.gene70585:intron | 10.0% |
| !!! | AATTTTAATAACAATTTACT+TGG | + | chr3.1:64401725-64401744 | MS.gene70585:intron | 10.0% |
| !! | ACACTAACATTTAAAAAAAA+GGG | - | chr3.1:64402076-64402095 | None:intergenic | 15.0% |
| !!! | GTATATAAAATTAATTTGGT+TGG | + | chr3.1:64401102-64401121 | MS.gene70585:intron | 15.0% |
| !! | AGAAATAATGTGTTAATACT+TGG | - | chr3.1:64401367-64401386 | None:intergenic | 20.0% |
| !! | AGAACAATAAGAAAATGTTT+GGG | - | chr3.1:64401770-64401789 | None:intergenic | 20.0% |
| !! | CACACTAACATTTAAAAAAA+AGG | - | chr3.1:64402077-64402096 | None:intergenic | 20.0% |
| !! | TAGAACAATAAGAAAATGTT+TGG | - | chr3.1:64401771-64401790 | None:intergenic | 20.0% |
| !!! | ATGGAAAATAATTTTGTTTC+CGG | - | chr3.1:64401326-64401345 | None:intergenic | 20.0% |
| ! | ACAAATGTTAGTATGTTAAG+GGG | + | chr3.1:64401882-64401901 | MS.gene70585:intron | 25.0% |
| ! | ACAAGGAAAAGAGAATTATT+AGG | + | chr3.1:64401020-64401039 | MS.gene70585:intron | 25.0% |
| ! | ATCATGTTGTCTAATAAAGA+GGG | - | chr3.1:64401517-64401536 | None:intergenic | 25.0% |
| ! | ATGTTTAGGTATAGTCATAT+TGG | + | chr3.1:64401479-64401498 | MS.gene70585:intron | 25.0% |
| ! | CAAGGAAAAGAGAATTATTA+GGG | + | chr3.1:64401021-64401040 | MS.gene70585:intron | 25.0% |
| ! | CGTCTATTTATTATAGTGAT+GGG | + | chr3.1:64400922-64400941 | MS.gene70585:intron | 25.0% |
| ! | CTAACATTTAAAAAAAAGGG+CGG | - | chr3.1:64402073-64402092 | None:intergenic | 25.0% |
| ! | GAACAATAAGAAAATGTTTG+GGG | - | chr3.1:64401769-64401788 | None:intergenic | 25.0% |
| ! | GACAAATGTTAGTATGTTAA+GGG | + | chr3.1:64401881-64401900 | MS.gene70585:intron | 25.0% |
| ! | TAATGTTAAATGCTAAGTCT+TGG | + | chr3.1:64402349-64402368 | MS.gene70585:intron | 25.0% |
| ! | TCGTCTATTTATTATAGTGA+TGG | + | chr3.1:64400921-64400940 | MS.gene70585:intron | 25.0% |
| ! | TGACAAATGTTAGTATGTTA+AGG | + | chr3.1:64401880-64401899 | MS.gene70585:intron | 25.0% |
| ! | TGTTTAGGTATAGTCATATT+GGG | + | chr3.1:64401480-64401499 | MS.gene70585:intron | 25.0% |
| ! | TTAAAAAATGCAAACCAAGT+AGG | - | chr3.1:64401850-64401869 | None:intergenic | 25.0% |
| !! | ATAGTCATATTGGGAATTTT+TGG | + | chr3.1:64401489-64401508 | MS.gene70585:intron | 25.0% |
| !! | GTTTTGTAGCAATTATGTTT+AGG | + | chr3.1:64401465-64401484 | MS.gene70585:intron | 25.0% |
| !! | TAGTCATATTGGGAATTTTT+GGG | + | chr3.1:64401490-64401509 | MS.gene70585:intron | 25.0% |
| !!! | ACATTATTTCTGTCATTCAA+AGG | + | chr3.1:64401376-64401395 | MS.gene70585:intron | 25.0% |
| !!! | ATGTTTGGATGTTTTTACTT+TGG | + | chr3.1:64401150-64401169 | MS.gene70585:intron | 25.0% |
| AAATTTAACTGCCTTTGACA+AGG | + | chr3.1:64401003-64401022 | MS.gene70585:intron | 30.0% | |
| AATTCATCTCTTCAATTGCA+TGG | + | chr3.1:64400391-64400410 | MS.gene70585:intron | 30.0% | |
| ACGTATTCTATATTATCTGC+TGG | + | chr3.1:64402326-64402345 | MS.gene70585:intron | 30.0% | |
| AGTTGCTGATAGTTTGAATT+TGG | + | chr3.1:64400573-64400592 | MS.gene70585:intron | 30.0% | |
| CAAATGTTAGTATGTTAAGG+GGG | + | chr3.1:64401883-64401902 | MS.gene70585:intron | 30.0% | |
| CATAGTGTAGGTCATTAAAA+TGG | - | chr3.1:64402289-64402308 | None:intergenic | 30.0% | |
| CATCATGTTGTCTAATAAAG+AGG | - | chr3.1:64401518-64401537 | None:intergenic | 30.0% | |
| GGAAATTTGATTGAAAATCG+AGG | + | chr3.1:64400502-64400521 | MS.gene70585:CDS | 30.0% | |
| GTGAATATTAAGCGTGTATT+TGG | + | chr3.1:64401043-64401062 | MS.gene70585:intron | 30.0% | |
| GTTGATATCAAAAGGTTAGT+TGG | + | chr3.1:64402450-64402469 | MS.gene70585:CDS | 30.0% | |
| TAAAGGAGTTAAGGAGTTAA+AGG | - | chr3.1:64402150-64402169 | None:intergenic | 30.0% | |
| TATGACTCATAGTTAAGCAA+GGG | + | chr3.1:64401235-64401254 | MS.gene70585:intron | 30.0% | |
| TGTTAATCTAACTCTGTGTT+TGG | + | chr3.1:64400718-64400737 | MS.gene70585:intron | 30.0% | |
| TTATGACTCATAGTTAAGCA+AGG | + | chr3.1:64401234-64401253 | MS.gene70585:intron | 30.0% | |
| TTGAATTTGGATTTGTGTTC+TGG | + | chr3.1:64400586-64400605 | MS.gene70585:intron | 30.0% | |
| TTGGTTATCTAAACTGTATC+AGG | + | chr3.1:64400737-64400756 | MS.gene70585:intron | 30.0% | |
| ! | AATTCTCTTTTCCTTGTCAA+AGG | - | chr3.1:64401017-64401036 | None:intergenic | 30.0% |
| ! | GAATGTATATGATCGATTTC+AGG | + | chr3.1:64400621-64400640 | MS.gene70585:intron | 30.0% |
| ! | TCTGATTTGTAGTTTCAAGT+GGG | + | chr3.1:64400953-64400972 | MS.gene70585:intron | 30.0% |
| !!! | ATGTTTTGACTTCCAATTGA+AGG | + | chr3.1:64401438-64401457 | MS.gene70585:intron | 30.0% |
| AACCTCTTGTGTAAAAAGCA+GGG | + | chr3.1:64401972-64401991 | MS.gene70585:intron | 35.0% | |
| AACTCCTTTAAACCCTTACT+TGG | + | chr3.1:64402160-64402179 | MS.gene70585:intron | 35.0% | |
| AATTTGGATTTGTGTTCTGG+TGG | + | chr3.1:64400589-64400608 | MS.gene70585:intron | 35.0% | |
| ATCTCAATGCAAACCAAGTA+AGG | - | chr3.1:64402176-64402195 | None:intergenic | 35.0% | |
| CAAACCAAGTAAGGGTTTAA+AGG | - | chr3.1:64402167-64402186 | None:intergenic | 35.0% | |
| CGAAGAAACATAACATGCAA+CGG | - | chr3.1:64400904-64400923 | None:intergenic | 35.0% | |
| CTTCCACATTCTTATATACC+TGG | + | chr3.1:64400836-64400855 | MS.gene70585:intron | 35.0% | |
| GCAGATGAAGTACAATATCA+AGG | - | chr3.1:64401584-64401603 | None:intergenic | 35.0% | |
| GTAAGGGTTTAAAGGAGTTA+AGG | - | chr3.1:64402159-64402178 | None:intergenic | 35.0% | |
| TACAAAACCTCTCCTTCAAT+TGG | - | chr3.1:64401453-64401472 | None:intergenic | 35.0% | |
| TATCAAGGCATACCATATTG+TGG | - | chr3.1:64401569-64401588 | None:intergenic | 35.0% | |
| TCAGCTAGAAAACATAGTGT+AGG | - | chr3.1:64402301-64402320 | None:intergenic | 35.0% | |
| TCTCAATGCAAACCAAGTAA+GGG | - | chr3.1:64402175-64402194 | None:intergenic | 35.0% | |
| TCTTAGACAATATCACTCTC+TGG | + | chr3.1:64400761-64400780 | MS.gene70585:CDS | 35.0% | |
| TGTTCTATCTGTACATTTCC+TGG | + | chr3.1:64401784-64401803 | MS.gene70585:intron | 35.0% | |
| TTCATTGGGATGTATCTACA+AGG | + | chr3.1:64401816-64401835 | MS.gene70585:intron | 35.0% | |
| TTCTTATATACCTGGCTGAA+TGG | + | chr3.1:64400844-64400863 | MS.gene70585:intron | 35.0% | |
| TTTGATGAGATTCTCCAATG+AGG | - | chr3.1:64400200-64400219 | None:intergenic | 35.0% | |
| ! | GTCTGATTTGTAGTTTCAAG+TGG | + | chr3.1:64400952-64400971 | MS.gene70585:intron | 35.0% |
| ! | TGGTTGGTATTGAGTTTGAA+GGG | + | chr3.1:64401118-64401137 | MS.gene70585:intron | 35.0% |
| ! | TTGGTTGGTATTGAGTTTGA+AGG | + | chr3.1:64401117-64401136 | MS.gene70585:intron | 35.0% |
| !! | AAAGGAACTGTTATTTCCAG+AGG | + | chr3.1:64401394-64401413 | MS.gene70585:intron | 35.0% |
| !! | AATGTTTGGGGTTAACTTGT+TGG | - | chr3.1:64401757-64401776 | None:intergenic | 35.0% |
| !!! | ACTGTTTCTACTTGTTTTGC+AGG | + | chr3.1:64400471-64400490 | MS.gene70585:intron | 35.0% |
| AACAGGAAAAGCTGCTATCA+AGG | + | chr3.1:64400788-64400807 | MS.gene70585:CDS | 40.0% | |
| AAGAGTCATACTGCATGCTT+TGG | + | chr3.1:64402251-64402270 | MS.gene70585:intron | 40.0% | |
| ACTAAAGCTCCTGCATATAC+AGG | - | chr3.1:64402043-64402062 | None:intergenic | 40.0% | |
| AGACAATATCACTCTCTGGA+AGG | + | chr3.1:64400765-64400784 | MS.gene70585:CDS | 40.0% | |
| AGTTAAGGAGTTAAAGGTCC+AGG | - | chr3.1:64402144-64402163 | None:intergenic | 40.0% | |
| ATATTGTGGAAAGCAGAGAC+AGG | - | chr3.1:64401555-64401574 | None:intergenic | 40.0% | |
| CAACCTCTTGTGTAAAAAGC+AGG | + | chr3.1:64401971-64401990 | MS.gene70585:intron | 40.0% | |
| CAGCCAGGTATATAAGAATG+TGG | - | chr3.1:64400842-64400861 | None:intergenic | 40.0% | |
| CATTTAAAAAAAAGGGCGGC+TGG | - | chr3.1:64402069-64402088 | None:intergenic | 40.0% | |
| CCTGGCTGAAGAATTTCATT+GGG | + | chr3.1:64401802-64401821 | MS.gene70585:intron | 40.0% | |
| CTAAAGCTCCTGCATATACA+GGG | - | chr3.1:64402042-64402061 | None:intergenic | 40.0% | |
| CTTGTGTAAAAAGCAGGGTA+AGG | + | chr3.1:64401977-64401996 | MS.gene70585:intron | 40.0% | |
| GCTTCGTACAATACACCAAA+GGG | + | chr3.1:64401999-64402018 | MS.gene70585:intron | 40.0% | |
| GTCATGTGACTGAAAAGTCA+CGG | + | chr3.1:64401932-64401951 | MS.gene70585:intron | 40.0% | |
| GTCGCTTAAATCACATTTGC+CGG | + | chr3.1:64401304-64401323 | MS.gene70585:intron | 40.0% | |
| GTTAAGGAGTTAAAGGTCCA+GGG | - | chr3.1:64402143-64402162 | None:intergenic | 40.0% | |
| TATCACTGAAACTCAGCAAG+AGG | + | chr3.1:64400156-64400175 | MS.gene70585:CDS | 40.0% | |
| TATTGTGGAAAGCAGAGACA+GGG | - | chr3.1:64401554-64401573 | None:intergenic | 40.0% | |
| TCACATGAAATGAAAGCCTC+TGG | - | chr3.1:64401413-64401432 | None:intergenic | 40.0% | |
| TCACCATGTTTCTCGTGAAT+GGG | - | chr3.1:64401663-64401682 | None:intergenic | 40.0% | |
| TCATGTGACTGAAAAGTCAC+GGG | + | chr3.1:64401933-64401952 | MS.gene70585:intron | 40.0% | |
| TCCTGGCTGAAGAATTTCAT+TGG | + | chr3.1:64401801-64401820 | MS.gene70585:intron | 40.0% | |
| TGTCTCTGCTTTCCACAATA+TGG | + | chr3.1:64401554-64401573 | MS.gene70585:intron | 40.0% | |
| TTCACCATGTTTCTCGTGAA+TGG | - | chr3.1:64401664-64401683 | None:intergenic | 40.0% | |
| TTGACTTCCAATTGAAGGAG+AGG | + | chr3.1:64401443-64401462 | MS.gene70585:intron | 40.0% | |
| ! | AAGTGGGAATGTTGAGTTGT+TGG | + | chr3.1:64400969-64400988 | MS.gene70585:intron | 40.0% |
| ! | CCTTTTGATATCAACCTCTC+CGG | - | chr3.1:64402445-64402464 | None:intergenic | 40.0% |
| ! | GGTTGGTATTGAGTTTGAAG+GGG | + | chr3.1:64401119-64401138 | MS.gene70585:intron | 40.0% |
| ! | TTACACAAGAGGTTGTTTCC+AGG | - | chr3.1:64401966-64401985 | None:intergenic | 40.0% |
| !! | GTTAATACTTGGTGCATGAC+TGG | - | chr3.1:64401356-64401375 | None:intergenic | 40.0% |
| !!! | CTTGTTTTGCAGGTTAGAGT+TGG | + | chr3.1:64400481-64400500 | MS.gene70585:intron | 40.0% |
| !!! | TACCCTGCTTTTTACACAAG+AGG | - | chr3.1:64401977-64401996 | None:intergenic | 40.0% |
| AAAGTCACGGGTTCAATTCC+TGG | + | chr3.1:64401945-64401964 | MS.gene70585:intron | 45.0% | |
| AATTGCCAAGATTCGAACCC+TGG | + | chr3.1:64402123-64402142 | MS.gene70585:intron | 45.0% | |
| ACAACTTTACCATTGCGCCA+AGG | - | chr3.1:64401911-64401930 | None:intergenic | 45.0% | |
| ACAAGGCTGTTCATCCTACT+TGG | + | chr3.1:64401833-64401852 | MS.gene70585:intron | 45.0% | |
| AGCTGTGGAATAACCAGCTA+CGG | - | chr3.1:64402415-64402434 | None:intergenic | 45.0% | |
| AGTGAGGAGGTTGTTGAGAT+TGG | - | chr3.1:64400312-64400331 | None:intergenic | 45.0% | |
| ATCCAGAGAAAGTGAATCCG+CGG | - | chr3.1:64400358-64400377 | None:intergenic | 45.0% | |
| CCAATGAGGATGCGAAGAAT+TGG | - | chr3.1:64400186-64400205 | None:intergenic | 45.0% | |
| CCAATTCTTCGCATCCTCAT+TGG | + | chr3.1:64400183-64400202 | MS.gene70585:CDS | 45.0% | |
| CCCAATGAAATTCTTCAGCC+AGG | - | chr3.1:64401805-64401824 | None:intergenic | 45.0% | |
| CTTCCCATTCACGAGAAACA+TGG | + | chr3.1:64401657-64401676 | MS.gene70585:intron | 45.0% | |
| GGCTTCGTACAATACACCAA+AGG | + | chr3.1:64401998-64402017 | MS.gene70585:intron | 45.0% | |
| TCGTACAATACACCAAAGGG+TGG | + | chr3.1:64402002-64402021 | MS.gene70585:intron | 45.0% | |
| TTAAGCACTACCATTCAGCC+AGG | - | chr3.1:64400857-64400876 | None:intergenic | 45.0% | |
| ! | GAAGGGGTGTGATTCATGTT+TGG | + | chr3.1:64401135-64401154 | MS.gene70585:intron | 45.0% |
| ! | GATTTGTGTTCTGGTGGATG+TGG | + | chr3.1:64400595-64400614 | MS.gene70585:intron | 45.0% |
| ! | TATCACTCTCTGGAAGGAAC+AGG | + | chr3.1:64400771-64400790 | MS.gene70585:CDS | 45.0% |
| !! | CCGGAGAGGTTGATATCAAA+AGG | + | chr3.1:64402442-64402461 | MS.gene70585:CDS | 45.0% |
| !! | GTGCATGACTGGTTTCACAA+TGG | - | chr3.1:64401345-64401364 | None:intergenic | 45.0% |
| AAGGTCCAGGGTTCGAATCT+TGG | - | chr3.1:64402131-64402150 | None:intergenic | 50.0% | |
| AGTATGTTAAGGGGGAGCCT+TGG | + | chr3.1:64401891-64401910 | MS.gene70585:intron | 50.0% | |
| CATATACAGGGTACGGGAAG+GGG | - | chr3.1:64402030-64402049 | None:intergenic | 50.0% | |
| CTCCTGCATATACAGGGTAC+GGG | - | chr3.1:64402036-64402055 | None:intergenic | 50.0% | |
| GAATAACCAGCTACGGTGTG+AGG | - | chr3.1:64402408-64402427 | None:intergenic | 50.0% | |
| GAGGAGGTTGTTGAGATTGG+AGG | - | chr3.1:64400309-64400328 | None:intergenic | 50.0% | |
| GAGGTTGTTGAGATTGGAGG+CGG | - | chr3.1:64400306-64400325 | None:intergenic | 50.0% | |
| GCATATACAGGGTACGGGAA+GGG | - | chr3.1:64402031-64402050 | None:intergenic | 50.0% | |
| GCTCCTGCATATACAGGGTA+CGG | - | chr3.1:64402037-64402056 | None:intergenic | 50.0% | |
| TATTCCACAGCTGCTACTGC+CGG | + | chr3.1:64402423-64402442 | MS.gene70585:CDS | 50.0% | |
| TCCAGAGAAAGTGAATCCGC+GGG | - | chr3.1:64400357-64400376 | None:intergenic | 50.0% | |
| TGCATATACAGGGTACGGGA+AGG | - | chr3.1:64402032-64402051 | None:intergenic | 50.0% | |
| TTCCCGTACCCTGTATATGC+AGG | + | chr3.1:64402031-64402050 | MS.gene70585:intron | 50.0% | |
| TTTCCCCCGCAAAAGCAAGA+GGG | - | chr3.1:64401607-64401626 | None:intergenic | 50.0% | |
| !! | ATCTGCCCCTCTTGCTTTTG+CGG | + | chr3.1:64401598-64401617 | MS.gene70585:intron | 50.0% |
| !! | TGTGTGAAACACTGACTCGC+AGG | + | chr3.1:64402377-64402396 | MS.gene70585:intron | 50.0% |
| ACAACCTCCTCACTGCTCCA+TGG | + | chr3.1:64400318-64400337 | MS.gene70585:CDS | 55.0% | |
| ACCCGCGGATTCACTTTCTC+TGG | + | chr3.1:64400353-64400372 | MS.gene70585:CDS | 55.0% | |
| GAATCCGCGGGTTTGAGAAG+CGG | - | chr3.1:64400345-64400364 | None:intergenic | 55.0% | |
| GGAAAGCAGAGACAGGGAGT+TGG | - | chr3.1:64401548-64401567 | None:intergenic | 55.0% | |
| GTTGAGATTGGAGGCGGTAG+TGG | - | chr3.1:64400300-64400319 | None:intergenic | 55.0% | |
| GTTTCCCCCGCAAAAGCAAG+AGG | - | chr3.1:64401608-64401627 | None:intergenic | 55.0% | |
| TAACCAGCTACGGTGTGAGG+TGG | - | chr3.1:64402405-64402424 | None:intergenic | 55.0% | |
| TTCCCCCGCAAAAGCAAGAG+GGG | - | chr3.1:64401606-64401625 | None:intergenic | 55.0% | |
| ! | GATTTCAGGTCGCGCGTATG+AGG | + | chr3.1:64400635-64400654 | MS.gene70585:intron | 55.0% |
| !! | TCTGCCCCTCTTGCTTTTGC+GGG | + | chr3.1:64401599-64401618 | MS.gene70585:intron | 55.0% |
| AAGCGGACCATGGAGCAGTG+AGG | - | chr3.1:64400328-64400347 | None:intergenic | 60.0% | |
| CGGGTTTGAGAAGCGGACCA+TGG | - | chr3.1:64400338-64400357 | None:intergenic | 60.0% | |
| GTTCCACCTCACACCGTAGC+TGG | + | chr3.1:64402399-64402418 | MS.gene70585:CDS | 60.0% | |
| TGGTCCGCTTCTCAAACCCG+CGG | + | chr3.1:64400338-64400357 | MS.gene70585:CDS | 60.0% | |
| ! | ATCGGAGATGACGGTGGGGA+AGG | - | chr3.1:64400257-64400276 | None:intergenic | 60.0% |
| ! | CGGAGATCGGAGATGACGGT+GGG | - | chr3.1:64400262-64400281 | None:intergenic | 60.0% |
| ! | GAGATTGGAGGCGGTAGTGG+TGG | - | chr3.1:64400297-64400316 | None:intergenic | 60.0% |
| ! | GGAGATCGGAGATGACGGTG+GGG | - | chr3.1:64400261-64400280 | None:intergenic | 60.0% |
| ! | GGCGGTAGTGGTGGAGTTTG+CGG | - | chr3.1:64400288-64400307 | None:intergenic | 60.0% |
| ! | GGTAGTGGTGGAGTTTGCGG+CGG | - | chr3.1:64400285-64400304 | None:intergenic | 60.0% |
| ! | TCGGAGATGACGGTGGGGAA+GGG | - | chr3.1:64400256-64400275 | None:intergenic | 60.0% |
| !! | CTGCCCCTCTTGCTTTTGCG+GGG | + | chr3.1:64401600-64401619 | MS.gene70585:intron | 60.0% |
| !! | TGCCCCTCTTGCTTTTGCGG+GGG | + | chr3.1:64401601-64401620 | MS.gene70585:intron | 60.0% |
| AAGGGGGAGCCTTGGCGCAA+TGG | + | chr3.1:64401899-64401918 | MS.gene70585:intron | 65.0% | |
| CACAGCTGCTACTGCCGGAG+AGG | + | chr3.1:64402428-64402447 | MS.gene70585:CDS | 65.0% | |
| CGGACCATGGAGCAGTGAGG+AGG | - | chr3.1:64400325-64400344 | None:intergenic | 65.0% | |
| CGGGAAGGGGTTCCACCCTT+TGG | - | chr3.1:64402017-64402036 | None:intergenic | 65.0% | |
| CTCTCCGGCAGTAGCAGCTG+TGG | - | chr3.1:64402430-64402449 | None:intergenic | 65.0% | |
| GAGTTTGCGGCGGCGGAGAT+CGG | - | chr3.1:64400275-64400294 | None:intergenic | 65.0% | |
| GCGGCGGAGATCGGAGATGA+CGG | - | chr3.1:64400266-64400285 | None:intergenic | 65.0% | |
| TGGGGAAGGGGAGGAAGAGG+TGG | - | chr3.1:64400243-64400262 | None:intergenic | 65.0% | |
| ! | AGATGACGGTGGGGAAGGGG+AGG | - | chr3.1:64400252-64400271 | None:intergenic | 65.0% |
| ! | AGTGGTGGAGTTTGCGGCGG+CGG | - | chr3.1:64400282-64400301 | None:intergenic | 65.0% |
| ! | CGGAGATGACGGTGGGGAAG+GGG | - | chr3.1:64400255-64400274 | None:intergenic | 65.0% |
| ! | GCGGAGATCGGAGATGACGG+TGG | - | chr3.1:64400263-64400282 | None:intergenic | 65.0% |
| CGGTGGGGAAGGGGAGGAAG+AGG | - | chr3.1:64400246-64400265 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64400146 | 64402482 | 64400146 | ID=MS.gene70585 |
| chr3.1 | mRNA | 64400146 | 64402482 | 64400146 | ID=MS.gene70585.t1;Parent=MS.gene70585 |
| chr3.1 | exon | 64400146 | 64400382 | 64400146 | ID=MS.gene70585.t1.exon1;Parent=MS.gene70585.t1 |
| chr3.1 | CDS | 64400146 | 64400382 | 64400146 | ID=cds.MS.gene70585.t1;Parent=MS.gene70585.t1 |
| chr3.1 | exon | 64400493 | 64400523 | 64400493 | ID=MS.gene70585.t1.exon2;Parent=MS.gene70585.t1 |
| chr3.1 | CDS | 64400493 | 64400523 | 64400493 | ID=cds.MS.gene70585.t1;Parent=MS.gene70585.t1 |
| chr3.1 | exon | 64400643 | 64400656 | 64400643 | ID=MS.gene70585.t1.exon3;Parent=MS.gene70585.t1 |
| chr3.1 | CDS | 64400643 | 64400656 | 64400643 | ID=cds.MS.gene70585.t1;Parent=MS.gene70585.t1 |
| chr3.1 | exon | 64400759 | 64400809 | 64400759 | ID=MS.gene70585.t1.exon4;Parent=MS.gene70585.t1 |
| chr3.1 | CDS | 64400759 | 64400809 | 64400759 | ID=cds.MS.gene70585.t1;Parent=MS.gene70585.t1 |
| chr3.1 | exon | 64402399 | 64402482 | 64402399 | ID=MS.gene70585.t1.exon5;Parent=MS.gene70585.t1 |
| chr3.1 | CDS | 64402399 | 64402482 | 64402399 | ID=cds.MS.gene70585.t1;Parent=MS.gene70585.t1 |
| Gene Sequence |
| Protein sequence |
