Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70739.t1 | XP_003601379.1 | 95.2 | 375 | 14 | 1 | 5 | 375 | 4 | 378 | 5.50E-181 | 643.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70739.t1 | Q1E3S4 | 27.7 | 177 | 115 | 3 | 58 | 229 | 5 | 173 | 4.8e-08 | 60.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70739.t1 | G7J6P8 | 95.2 | 375 | 14 | 1 | 5 | 375 | 4 | 378 | 3.9e-181 | 643.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053341 | MS.gene70739 | 0.822045 | 2.92E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene70739 | 0.802661 | 5.05E-49 | -1.69E-46 |
| MS.gene059051 | MS.gene70739 | 0.835272 | 1.85E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70739.t1 | MTR_3g080080 | 93.931 | 379 | 18 | 2 | 1 | 375 | 1 | 378 | 0.0 | 679 |
| MS.gene70739.t1 | MTR_4g021570 | 31.522 | 276 | 155 | 10 | 56 | 320 | 6 | 258 | 5.45e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70739.t1 | AT3G51980 | 55.348 | 374 | 161 | 2 | 3 | 372 | 8 | 379 | 7.39e-137 | 395 |
| MS.gene70739.t1 | AT5G02150 | 29.470 | 302 | 176 | 11 | 56 | 347 | 6 | 280 | 3.43e-17 | 82.0 |
| MS.gene70739.t1 | AT5G02150 | 29.470 | 302 | 176 | 11 | 56 | 347 | 6 | 280 | 3.43e-17 | 82.0 |
| MS.gene70739.t1 | AT3G09350 | 29.213 | 267 | 172 | 7 | 56 | 320 | 6 | 257 | 1.12e-15 | 78.2 |
| MS.gene70739.t1 | AT3G53800 | 27.922 | 308 | 165 | 8 | 56 | 329 | 6 | 290 | 6.28e-15 | 75.9 |
| MS.gene70739.t1 | AT3G53800 | 30.120 | 249 | 145 | 6 | 103 | 329 | 10 | 251 | 3.58e-14 | 73.2 |
| MS.gene70739.t1 | AT5G02150 | 32.710 | 214 | 129 | 7 | 135 | 347 | 42 | 241 | 5.12e-14 | 72.4 |
| MS.gene70739.t1 | AT3G09350 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 9.71e-13 | 68.9 |
| MS.gene70739.t1 | AT3G09350 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 9.71e-13 | 68.9 |
| MS.gene70739.t1 | AT3G09350 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 9.71e-13 | 68.9 |
Find 68 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTAATGCCTTCTTCTA+TGG | 0.201154 | 3.1:-68222533 | None:intergenic |
| TTTAGGGACTTATGTGCTTT+AGG | 0.269168 | 3.1:+68223486 | MS.gene70739:CDS |
| GAATAATGCGTCTACTTCTT+TGG | 0.270695 | 3.1:+68220585 | MS.gene70739:CDS |
| ACTCTCAAGGTTGATAATTA+TGG | 0.284619 | 3.1:+68222498 | MS.gene70739:CDS |
| GCAACTGCTGCATGGGTTCT+TGG | 0.322183 | 3.1:+68221933 | MS.gene70739:CDS |
| AGCTGGAGGTTTGATGCTTC+AGG | 0.334540 | 3.1:+68222618 | MS.gene70739:CDS |
| GAACTTAATCACCATGATTC+TGG | 0.337700 | 3.1:+68221903 | MS.gene70739:CDS |
| AGTGAGGTTGTTGTCTGTTT+CGG | 0.341684 | 3.1:-68220110 | None:intergenic |
| CGATGGCGGGTTTCCTTCAA+TGG | 0.363526 | 3.1:+68220207 | MS.gene70739:CDS |
| TTGATAATTATGGTAAAATC+TGG | 0.364174 | 3.1:+68222508 | MS.gene70739:CDS |
| CTGTTAGATTTAAACAAACT+TGG | 0.368128 | 3.1:+68221858 | MS.gene70739:intron |
| ACAATTGTTGCATGATTTGA+TGG | 0.390675 | 3.1:+68223530 | MS.gene70739:CDS |
| CTCTTTCCGACTCCGATGGC+GGG | 0.393050 | 3.1:+68220194 | MS.gene70739:CDS |
| TCGACGGCAGTTGATAATAA+TGG | 0.404340 | 3.1:-68220142 | None:intergenic |
| AGATAGATACAGAGCTTTGT+TGG | 0.429529 | 3.1:+68220609 | MS.gene70739:CDS |
| CATACCTGTTGCTGAAAAGT+TGG | 0.441542 | 3.1:-68221975 | None:intergenic |
| TTAAGAGTCTCTTGCAACTA+AGG | 0.444194 | 3.1:+68223445 | MS.gene70739:CDS |
| TCTTGAGCTTGTTGAGCCAT+TGG | 0.448659 | 3.1:+68220636 | MS.gene70739:CDS |
| TCGGAATAATTTAGCCAGTC+AGG | 0.451248 | 3.1:+68222579 | MS.gene70739:CDS |
| CAATGGATAGCATGTTGCAC+TGG | 0.464205 | 3.1:+68220224 | MS.gene70739:CDS |
| CCACAGACTTTAACAGATCC+TGG | 0.468287 | 3.1:-68222868 | None:intergenic |
| TTCAACCGACCTTGATCTCC+AGG | 0.485779 | 3.1:+68222904 | MS.gene70739:CDS |
| TGCAACATGCTATCCATTGA+AGG | 0.490686 | 3.1:-68220220 | None:intergenic |
| CGACCTTGATCTCCAGGAAA+AGG | 0.496260 | 3.1:+68222910 | MS.gene70739:CDS |
| TTAGATTTAAACAAACTTGG+TGG | 0.500809 | 3.1:+68221861 | MS.gene70739:intron |
| GTTGTTGTCTGTTTCGGCGA+CGG | 0.505085 | 3.1:-68220104 | None:intergenic |
| GCATGATTTGATGGCGGATG+AGG | 0.511123 | 3.1:+68223539 | MS.gene70739:CDS |
| TAGATTTAAACAAACTTGGT+GGG | 0.516287 | 3.1:+68221862 | MS.gene70739:intron |
| GAGTCGGAAAGAGCGGCATC+CGG | 0.516582 | 3.1:-68220184 | None:intergenic |
| GCCGCTCTTTCCGACTCCGA+TGG | 0.518427 | 3.1:+68220190 | MS.gene70739:CDS |
| CTATTCCAGGTCTTGGAACT+CGG | 0.522629 | 3.1:+68222472 | MS.gene70739:intron |
| ACTCGCTCTCATACTCTTCA+CGG | 0.526349 | 3.1:+68220075 | MS.gene70739:CDS |
| TTACCATTTGCATTATCCAA+TGG | 0.528194 | 3.1:-68220652 | None:intergenic |
| GCTCTTTCCGACTCCGATGG+CGG | 0.529221 | 3.1:+68220193 | MS.gene70739:CDS |
| GAATTGTTCTATGCTGAAGC+TGG | 0.531227 | 3.1:+68222601 | MS.gene70739:CDS |
| ACGCTGTTTCAGCTTTGACT+CGG | 0.535198 | 3.1:+68222560 | MS.gene70739:CDS |
| TATTAGAGCAACTGCTGCAT+GGG | 0.537407 | 3.1:+68221926 | MS.gene70739:CDS |
| AAACATTTACCATAGAAAGC+TGG | 0.539602 | 3.1:+68223611 | MS.gene70739:CDS |
| AAATCTGGTTCCATAGAAGA+AGG | 0.545793 | 3.1:+68222523 | MS.gene70739:CDS |
| CGGAAAGAGCGGCATCCGGC+GGG | 0.546815 | 3.1:-68220180 | None:intergenic |
| GAGAGACTATGTAATGGATG+TGG | 0.547171 | 3.1:+68223566 | MS.gene70739:CDS |
| GTATTAGAGCAACTGCTGCA+TGG | 0.549978 | 3.1:+68221925 | MS.gene70739:CDS |
| TTGCTCTAATACCAGAATCA+TGG | 0.552550 | 3.1:-68221914 | None:intergenic |
| GGCATCCGGCGGGAGTAGAT+CGG | 0.560168 | 3.1:-68220170 | None:intergenic |
| TGATATCAAACTTCGGAGGA+AGG | 0.564399 | 3.1:+68222769 | MS.gene70739:CDS |
| AGCATAGAACAATTCCTGAC+TGG | 0.564526 | 3.1:-68222593 | None:intergenic |
| GAGCCATTGGATAATGCAAA+TGG | 0.568060 | 3.1:+68220649 | MS.gene70739:CDS |
| GGATCAGAGAGACTATGTAA+TGG | 0.571622 | 3.1:+68223560 | MS.gene70739:CDS |
| TGGAACTCGGTGTACTCTCA+AGG | 0.571684 | 3.1:+68222485 | MS.gene70739:CDS |
| AGGAAACCCGCCATCGGAGT+CGG | 0.575203 | 3.1:-68220200 | None:intergenic |
| AGTTGATAATAATGGCTGAC+GGG | 0.581532 | 3.1:-68220134 | None:intergenic |
| CCAGGATCTGTTAAAGTCTG+TGG | 0.581747 | 3.1:+68222868 | MS.gene70739:CDS |
| AATGGATAGCATGTTGCACT+GGG | 0.584422 | 3.1:+68220225 | MS.gene70739:CDS |
| TTGTTCTATGCTGAAGCTGG+AGG | 0.589290 | 3.1:+68222604 | MS.gene70739:CDS |
| TCGGAAAGAGCGGCATCCGG+CGG | 0.589412 | 3.1:-68220181 | None:intergenic |
| GGAAAATGTTCGTATTGAAG+TGG | 0.592134 | 3.1:+68223587 | MS.gene70739:CDS |
| CAAGTATTGATATCAAACTT+CGG | 0.604972 | 3.1:+68222762 | MS.gene70739:CDS |
| GCCATCGGAGTCGGAAAGAG+CGG | 0.605513 | 3.1:-68220191 | None:intergenic |
| CAGTTGATAATAATGGCTGA+CGG | 0.608320 | 3.1:-68220135 | None:intergenic |
| ATAATGGCTGACGGGAAGTG+AGG | 0.642518 | 3.1:-68220126 | None:intergenic |
| TAAATCAGTCAATAGAAGCA+CGG | 0.644107 | 3.1:-68222792 | None:intergenic |
| GAGTAGATCGGATTCATCGA+CGG | 0.645125 | 3.1:-68220158 | None:intergenic |
| CATTGAAGGAAACCCGCCAT+CGG | 0.646434 | 3.1:-68220206 | None:intergenic |
| TGAATCCGATCTACTCCCGC+CGG | 0.648772 | 3.1:+68220165 | MS.gene70739:CDS |
| CAAACTTGGTGGGCTTCATG+CGG | 0.669848 | 3.1:+68221872 | MS.gene70739:CDS |
| ATTGTTGCATGATTTGATGG+CGG | 0.681664 | 3.1:+68223533 | MS.gene70739:CDS |
| GTATTGATATCAAACTTCGG+AGG | 0.727448 | 3.1:+68222765 | MS.gene70739:CDS |
| CGCTCTCATACTCTTCACGG+CGG | 0.754940 | 3.1:+68220078 | MS.gene70739:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATTTATGTACTATT+TGG | - | chr3.1:68220851-68220870 | None:intergenic | 10.0% |
| !! | GATAATATTAAAACTTAGAT+AGG | - | chr3.1:68222647-68222666 | None:intergenic | 15.0% |
| !! | TGTATAGTTATTAATTATCA+CGG | + | chr3.1:68220257-68220276 | MS.gene70739:intron | 15.0% |
| !! | TTGATTTACTTTATTATCAA+AGG | + | chr3.1:68223244-68223263 | MS.gene70739:intron | 15.0% |
| !! | TTTATTTATTTATGTGATTG+TGG | + | chr3.1:68220486-68220505 | MS.gene70739:intron | 15.0% |
| !!! | TAAACAAAAATGTACTTTTT+AGG | + | chr3.1:68221004-68221023 | MS.gene70739:intron | 15.0% |
| !!! | TATTGATACTTGAATTTTTT+AGG | + | chr3.1:68222724-68222743 | MS.gene70739:intron | 15.0% |
| !! | CATTGAATACATAATGTATT+TGG | + | chr3.1:68221029-68221048 | MS.gene70739:intron | 20.0% |
| !! | TATGTATTCAAATATAGACT+TGG | + | chr3.1:68221573-68221592 | MS.gene70739:intron | 20.0% |
| !! | TGAATATTATGAACAAATGA+CGG | - | chr3.1:68221764-68221783 | None:intergenic | 20.0% |
| !! | TTCAAATATCTCATAAGTAT+CGG | - | chr3.1:68222164-68222183 | None:intergenic | 20.0% |
| !!! | ACTATAATGTTTTTTCACTT+GGG | + | chr3.1:68220705-68220724 | MS.gene70739:intron | 20.0% |
| !!! | ATTTATGTACTATTTGGTTT+AGG | - | chr3.1:68220845-68220864 | None:intergenic | 20.0% |
| !!! | GAATTTTTTAGGATATTTTG+AGG | + | chr3.1:68222735-68222754 | MS.gene70739:intron | 20.0% |
| !!! | TACTATAATGTTTTTTCACT+TGG | + | chr3.1:68220704-68220723 | MS.gene70739:intron | 20.0% |
| !!! | TCAAAATGTTTTGTTTTTCT+CGG | - | chr3.1:68223035-68223054 | None:intergenic | 20.0% |
| !!! | TCTCAAAATCTGTTTTTTTT+AGG | + | chr3.1:68221277-68221296 | MS.gene70739:intron | 20.0% |
| !!! | TTGATAATTATGGTAAAATC+TGG | + | chr3.1:68222508-68222527 | MS.gene70739:CDS | 20.0% |
| !!! | TTTTTGTTTATAAATGTGAC+CGG | - | chr3.1:68220994-68221013 | None:intergenic | 20.0% |
| ! | AAAATAAGTAGAGGATACTA+GGG | - | chr3.1:68222201-68222220 | None:intergenic | 25.0% |
| ! | AAGTATAGATATAAGAAAGC+AGG | - | chr3.1:68222245-68222264 | None:intergenic | 25.0% |
| ! | AGTATATAAAGAACTTCACA+TGG | - | chr3.1:68221729-68221748 | None:intergenic | 25.0% |
| ! | ATAGTTATTAATTATCACGG+TGG | + | chr3.1:68220260-68220279 | MS.gene70739:intron | 25.0% |
| ! | CATTCAATGCTTAATGTATT+TGG | - | chr3.1:68221067-68221086 | None:intergenic | 25.0% |
| ! | CTGATATAAATCTTAGTAAG+CGG | + | chr3.1:68222380-68222399 | MS.gene70739:intron | 25.0% |
| ! | CTGTTAGATTTAAACAAACT+TGG | + | chr3.1:68221858-68221877 | MS.gene70739:intron | 25.0% |
| ! | GTATATAAAGAACTTCACAT+GGG | - | chr3.1:68221728-68221747 | None:intergenic | 25.0% |
| ! | GTTAGTATAATTATTCTCTG+AGG | - | chr3.1:68222081-68222100 | None:intergenic | 25.0% |
| ! | TAGATTTAAACAAACTTGGT+GGG | + | chr3.1:68221862-68221881 | MS.gene70739:intron | 25.0% |
| ! | TTAGATTTAAACAAACTTGG+TGG | + | chr3.1:68221861-68221880 | MS.gene70739:intron | 25.0% |
| ! | TTCTTTATATACTGTAGAAG+TGG | + | chr3.1:68221736-68221755 | MS.gene70739:intron | 25.0% |
| !! | AATTTTCATCAATTCAGCAT+CGG | - | chr3.1:68220551-68220570 | None:intergenic | 25.0% |
| !! | TCAGACCTTAAATACTTTTA+AGG | + | chr3.1:68221398-68221417 | MS.gene70739:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | chr3.1:68221102-68221121 | MS.gene70739:intron | 25.0% |
| !!! | AATACTTTTAAGGCTATGTT+TGG | + | chr3.1:68221408-68221427 | MS.gene70739:intron | 25.0% |
| !!! | CAAGTATTGATATCAAACTT+CGG | + | chr3.1:68222762-68222781 | MS.gene70739:CDS | 25.0% |
| !!! | CATAGCCTTAAAAGTATTTA+AGG | - | chr3.1:68221406-68221425 | None:intergenic | 25.0% |
| !!! | GACTGTTTTTTTCTTTTTCT+AGG | + | chr3.1:68220930-68220949 | MS.gene70739:intron | 25.0% |
| !!! | GCAAATTTTAGTAAAGTTAG+TGG | + | chr3.1:68220952-68220971 | MS.gene70739:intron | 25.0% |
| !!! | TTGTTTTTGCTTTTTGTGTA+TGG | + | chr3.1:68220312-68220331 | MS.gene70739:intron | 25.0% |
| AAACATTTACCATAGAAAGC+TGG | + | chr3.1:68223611-68223630 | MS.gene70739:CDS | 30.0% | |
| AAATAAGTAGAGGATACTAG+GGG | - | chr3.1:68222200-68222219 | None:intergenic | 30.0% | |
| ACAATTGTTGCATGATTTGA+TGG | + | chr3.1:68223530-68223549 | MS.gene70739:CDS | 30.0% | |
| ACACAAATTCAACAAGTCAT+AGG | - | chr3.1:68223182-68223201 | None:intergenic | 30.0% | |
| ACATTAGAAGAACAATCTCA+TGG | - | chr3.1:68223070-68223089 | None:intergenic | 30.0% | |
| ACTTCTTGGATGTATTAAAC+AGG | + | chr3.1:68223410-68223429 | MS.gene70739:intron | 30.0% | |
| AGATCCTGGTTATTGAAAAA+TGG | - | chr3.1:68222857-68222876 | None:intergenic | 30.0% | |
| ATAGATATAAGAAAGCAGGT+TGG | - | chr3.1:68222241-68222260 | None:intergenic | 30.0% | |
| CACAAATTCAACAAGTCATA+GGG | - | chr3.1:68223181-68223200 | None:intergenic | 30.0% | |
| CTTGTTGAATTTGTGTGAAA+TGG | + | chr3.1:68223186-68223205 | MS.gene70739:intron | 30.0% | |
| GAAAATAAGTAGAGGATACT+AGG | - | chr3.1:68222202-68222221 | None:intergenic | 30.0% | |
| GGATTGAATTACAGAAATGA+GGG | - | chr3.1:68223137-68223156 | None:intergenic | 30.0% | |
| GTAAATTGTCTCCTGTAAAT+AGG | + | chr3.1:68220884-68220903 | MS.gene70739:intron | 30.0% | |
| TAAATCAGTCAATAGAAGCA+CGG | - | chr3.1:68222795-68222814 | None:intergenic | 30.0% | |
| TAGATATAAGAAAGCAGGTT+GGG | - | chr3.1:68222240-68222259 | None:intergenic | 30.0% | |
| TCAGCTAACATATATCAAAG+AGG | - | chr3.1:68221363-68221382 | None:intergenic | 30.0% | |
| TGAAATGGTAAATGTACTTG+TGG | + | chr3.1:68223201-68223220 | MS.gene70739:intron | 30.0% | |
| TGGATTGAATTACAGAAATG+AGG | - | chr3.1:68223138-68223157 | None:intergenic | 30.0% | |
| TTACCATTTGCATTATCCAA+TGG | - | chr3.1:68220655-68220674 | None:intergenic | 30.0% | |
| TTATATCAGAATAAGCGCAT+AGG | - | chr3.1:68222369-68222388 | None:intergenic | 30.0% | |
| TTATGCATGCACTATTAAAC+AGG | - | chr3.1:68221822-68221841 | None:intergenic | 30.0% | |
| ! | GGTGTTACATTCATGATTTA+TGG | + | chr3.1:68221997-68222016 | MS.gene70739:intron | 30.0% |
| !! | ACTCTCAAGGTTGATAATTA+TGG | + | chr3.1:68222498-68222517 | MS.gene70739:CDS | 30.0% |
| !!! | AAGCGGTTGTTTTTTAACAA+AGG | + | chr3.1:68222397-68222416 | MS.gene70739:intron | 30.0% |
| !!! | GCTGATTCTTTTAACTTTTC+AGG | - | chr3.1:68220354-68220373 | None:intergenic | 30.0% |
| !!! | GGTGTTTTAACAGGAAATAA+TGG | + | chr3.1:68220507-68220526 | MS.gene70739:intron | 30.0% |
| !!! | TTGCTTTTTGTGTATGGTTT+AGG | + | chr3.1:68220318-68220337 | MS.gene70739:intron | 30.0% |
| !!! | TTTTGTTTTAATACTCCCTC+CGG | + | chr3.1:68220755-68220774 | MS.gene70739:intron | 30.0% |
| AATGAAACAGTTTGCATGAG+AGG | - | chr3.1:68222338-68222357 | None:intergenic | 35.0% | |
| ACATTTGCATCACACAGATA+AGG | - | chr3.1:68222995-68223014 | None:intergenic | 35.0% | |
| ACTGTAATACAACTGAGAGA+AGG | - | chr3.1:68221656-68221675 | None:intergenic | 35.0% | |
| AGAATTGCAATGGATGCAAA+AGG | + | chr3.1:68222138-68222157 | MS.gene70739:intron | 35.0% | |
| AGCTCAACATGAAACACAAA+AGG | - | chr3.1:68223381-68223400 | None:intergenic | 35.0% | |
| ATTGTTGCATGATTTGATGG+CGG | + | chr3.1:68223533-68223552 | MS.gene70739:CDS | 35.0% | |
| ATTTCAACTATTCCAGGTCT+TGG | + | chr3.1:68222465-68222484 | MS.gene70739:intron | 35.0% | |
| CAATGCAGGAAAATAAGTAG+AGG | - | chr3.1:68222210-68222229 | None:intergenic | 35.0% | |
| CTCAACATGAAACACAAAAG+GGG | - | chr3.1:68223379-68223398 | None:intergenic | 35.0% | |
| CTTTCTCTTGTAAATGAGAC+CGG | - | chr3.1:68220777-68220796 | None:intergenic | 35.0% | |
| GAAAACTATCATACTCACTC+CGG | - | chr3.1:68221124-68221143 | None:intergenic | 35.0% | |
| GAACTTAATCACCATGATTC+TGG | + | chr3.1:68221903-68221922 | MS.gene70739:CDS | 35.0% | |
| GAAGAACAATCTCATGGAAA+AGG | - | chr3.1:68223064-68223083 | None:intergenic | 35.0% | |
| GAATAATGCGTCTACTTCTT+TGG | + | chr3.1:68220585-68220604 | MS.gene70739:CDS | 35.0% | |
| GACCTGGAATAGTTGAAATT+TGG | - | chr3.1:68222464-68222483 | None:intergenic | 35.0% | |
| GCTCAACATGAAACACAAAA+GGG | - | chr3.1:68223380-68223399 | None:intergenic | 35.0% | |
| GGAAAATGTTCGTATTGAAG+TGG | + | chr3.1:68223587-68223606 | MS.gene70739:CDS | 35.0% | |
| TCCTGGTTATTGAAAAATGG+TGG | - | chr3.1:68222854-68222873 | None:intergenic | 35.0% | |
| TCTTGCCTAAGTAGTTTGAT+CGG | - | chr3.1:68221187-68221206 | None:intergenic | 35.0% | |
| TGCACAAAAAGAACTACAGA+AGG | - | chr3.1:68223346-68223365 | None:intergenic | 35.0% | |
| TGCCAAATTTCAACTATTCC+AGG | + | chr3.1:68222459-68222478 | MS.gene70739:intron | 35.0% | |
| TGCTTTAATGCCTTCTTCTA+TGG | - | chr3.1:68222536-68222555 | None:intergenic | 35.0% | |
| TGTTTATAAATGTGACCGGA+GGG | - | chr3.1:68220990-68221009 | None:intergenic | 35.0% | |
| TTAAGAGTCTCTTGCAACTA+AGG | + | chr3.1:68223445-68223464 | MS.gene70739:CDS | 35.0% | |
| TTGCTCTAATACCAGAATCA+TGG | - | chr3.1:68221917-68221936 | None:intergenic | 35.0% | |
| TTGTTTATAAATGTGACCGG+AGG | - | chr3.1:68220991-68221010 | None:intergenic | 35.0% | |
| TTTAGGGACTTATGTGCTTT+AGG | + | chr3.1:68223486-68223505 | MS.gene70739:CDS | 35.0% | |
| ! | AAATCTGGTTCCATAGAAGA+AGG | + | chr3.1:68222523-68222542 | MS.gene70739:CDS | 35.0% |
| ! | AAGGAGTATGATCAGTAGAA+TGG | + | chr3.1:68223263-68223282 | MS.gene70739:intron | 35.0% |
| ! | AGATAGATACAGAGCTTTGT+TGG | + | chr3.1:68220609-68220628 | MS.gene70739:CDS | 35.0% |
| ! | CACTAAAGCTCGAGTTTTTA+GGG | + | chr3.1:68223470-68223489 | MS.gene70739:CDS | 35.0% |
| ! | GAGTGAGTATGATAGTTTTC+AGG | + | chr3.1:68221124-68221143 | MS.gene70739:intron | 35.0% |
| ! | GTATTGATATCAAACTTCGG+AGG | + | chr3.1:68222765-68222784 | MS.gene70739:CDS | 35.0% |
| ! | TCTTGCTCTGTTTTGTGTTA+AGG | - | chr3.1:68221611-68221630 | None:intergenic | 35.0% |
| ! | TGTGTTTCATGTTGAGCTTT+TGG | + | chr3.1:68223383-68223402 | MS.gene70739:intron | 35.0% |
| ! | TTCTAATAGTCACCTTTTCC+TGG | - | chr3.1:68222925-68222944 | None:intergenic | 35.0% |
| ! | TTTTGTGTTAAGGTGCGTTT+GGG | - | chr3.1:68221601-68221620 | None:intergenic | 35.0% |
| !! | ACCACCATTTTTCAATAACC+AGG | + | chr3.1:68222850-68222869 | MS.gene70739:CDS | 35.0% |
| !! | ACGTTGAGATTTTGAGAACA+TGG | - | chr3.1:68223158-68223177 | None:intergenic | 35.0% |
| !! | AGTTGATAATAATGGCTGAC+GGG | - | chr3.1:68220137-68220156 | None:intergenic | 35.0% |
| !! | CAGTTGATAATAATGGCTGA+CGG | - | chr3.1:68220138-68220157 | None:intergenic | 35.0% |
| !! | CTTTTAAGAAATACTCCCTC+CGG | - | chr3.1:68220911-68220930 | None:intergenic | 35.0% |
| !!! | CTTTTAAGGCTATGTTTGGA+TGG | + | chr3.1:68221412-68221431 | MS.gene70739:intron | 35.0% |
| !!! | TGTGATTGTGGTGTTTTAAC+AGG | + | chr3.1:68220498-68220517 | MS.gene70739:intron | 35.0% |
| AACACAAAACAGAGCAAGAG+TGG | + | chr3.1:68221612-68221631 | MS.gene70739:intron | 40.0% | |
| AATGGATAGCATGTTGCACT+GGG | + | chr3.1:68220225-68220244 | MS.gene70739:CDS | 40.0% | |
| AGCATAGAACAATTCCTGAC+TGG | - | chr3.1:68222596-68222615 | None:intergenic | 40.0% | |
| AGTGAGGTTGTTGTCTGTTT+CGG | - | chr3.1:68220113-68220132 | None:intergenic | 40.0% | |
| ATTACCAGTGAGACAAGTAC+TGG | - | chr3.1:68222282-68222301 | None:intergenic | 40.0% | |
| CATACCTGTTGCTGAAAAGT+TGG | - | chr3.1:68221978-68221997 | None:intergenic | 40.0% | |
| GAATTGTTCTATGCTGAAGC+TGG | + | chr3.1:68222601-68222620 | MS.gene70739:CDS | 40.0% | |
| GAGCCATTGGATAATGCAAA+TGG | + | chr3.1:68220649-68220668 | MS.gene70739:CDS | 40.0% | |
| GATCAGTAGAATGGAAGTGA+GGG | + | chr3.1:68223272-68223291 | MS.gene70739:intron | 40.0% | |
| GGATCAGAGAGACTATGTAA+TGG | + | chr3.1:68223560-68223579 | MS.gene70739:CDS | 40.0% | |
| TAAGGCTATGTTTGGATGGA+GGG | + | chr3.1:68221416-68221435 | MS.gene70739:intron | 40.0% | |
| TAGTTTGATCGGTGAGCTAA+GGG | - | chr3.1:68221176-68221195 | None:intergenic | 40.0% | |
| TATTAGAGCAACTGCTGCAT+GGG | + | chr3.1:68221926-68221945 | MS.gene70739:CDS | 40.0% | |
| TCGGAATAATTTAGCCAGTC+AGG | + | chr3.1:68222579-68222598 | MS.gene70739:CDS | 40.0% | |
| TGATATCAAACTTCGGAGGA+AGG | + | chr3.1:68222769-68222788 | MS.gene70739:CDS | 40.0% | |
| TGATCAGTAGAATGGAAGTG+AGG | + | chr3.1:68223271-68223290 | MS.gene70739:intron | 40.0% | |
| TGCAACATGCTATCCATTGA+AGG | - | chr3.1:68220223-68220242 | None:intergenic | 40.0% | |
| TGGTTATGAATTACTCCCTC+CGG | + | chr3.1:68220972-68220991 | MS.gene70739:intron | 40.0% | |
| TTAAGGCTATGTTTGGATGG+AGG | + | chr3.1:68221415-68221434 | MS.gene70739:intron | 40.0% | |
| TTACCAGTGAGACAAGTACT+GGG | - | chr3.1:68222281-68222300 | None:intergenic | 40.0% | |
| TTGTCTCCTGTAAATAGGAC+CGG | + | chr3.1:68220889-68220908 | MS.gene70739:intron | 40.0% | |
| ! | CAACTTTTCAGCAACAGGTA+TGG | + | chr3.1:68221976-68221995 | MS.gene70739:intron | 40.0% |
| ! | CAATCCAACTTTTCAGCAAC+AGG | + | chr3.1:68221971-68221990 | MS.gene70739:CDS | 40.0% |
| ! | CCACTAAAGCTCGAGTTTTT+AGG | + | chr3.1:68223469-68223488 | MS.gene70739:CDS | 40.0% |
| ! | CCTAAAAACTCGAGCTTTAG+TGG | - | chr3.1:68223472-68223491 | None:intergenic | 40.0% |
| ! | GTTTTGTGTTAAGGTGCGTT+TGG | - | chr3.1:68221602-68221621 | None:intergenic | 40.0% |
| ! | TTTTTCTCGGTGAGAGTTGA+TGG | - | chr3.1:68223022-68223041 | None:intergenic | 40.0% |
| !! | ACTGCTTTTCCAGCTTTCTA+TGG | - | chr3.1:68223623-68223642 | None:intergenic | 40.0% |
| !! | GAGAGACTATGTAATGGATG+TGG | + | chr3.1:68223566-68223585 | MS.gene70739:CDS | 40.0% |
| !! | TAGTTTTCAGGATCGTACCT+AGG | + | chr3.1:68221136-68221155 | MS.gene70739:intron | 40.0% |
| !! | TCGACGGCAGTTGATAATAA+TGG | - | chr3.1:68220145-68220164 | None:intergenic | 40.0% |
| !!! | GAGCTTTTGGTTTGACTTCT+TGG | + | chr3.1:68223396-68223415 | MS.gene70739:intron | 40.0% |
| !!! | TGACGCTTTTGAAGTTCAGT+CGG | - | chr3.1:68220399-68220418 | None:intergenic | 40.0% |
| !!! | TTTGGATGGAGGGTTTTAGA+GGG | + | chr3.1:68221426-68221445 | MS.gene70739:intron | 40.0% |
| ACTCGCTCTCATACTCTTCA+CGG | + | chr3.1:68220075-68220094 | MS.gene70739:CDS | 45.0% | |
| AGAGTGGTAGATCCCAATGT+TGG | + | chr3.1:68221628-68221647 | MS.gene70739:intron | 45.0% | |
| ATTCTACAACAGCGCAACAC+TGG | - | chr3.1:68222123-68222142 | None:intergenic | 45.0% | |
| CAATGGATAGCATGTTGCAC+TGG | + | chr3.1:68220224-68220243 | MS.gene70739:CDS | 45.0% | |
| CCACAGACTTTAACAGATCC+TGG | - | chr3.1:68222871-68222890 | None:intergenic | 45.0% | |
| CCAGGATCTGTTAAAGTCTG+TGG | + | chr3.1:68222868-68222887 | MS.gene70739:CDS | 45.0% | |
| CTATTCCAGGTCTTGGAACT+CGG | + | chr3.1:68222472-68222491 | MS.gene70739:intron | 45.0% | |
| CTCTTGTAAATGAGACCGGA+GGG | - | chr3.1:68220773-68220792 | None:intergenic | 45.0% | |
| GAGTAGATCGGATTCATCGA+CGG | - | chr3.1:68220161-68220180 | None:intergenic | 45.0% | |
| GCGCTGTTGTAGAATTGCAA+TGG | + | chr3.1:68222128-68222147 | MS.gene70739:intron | 45.0% | |
| GCTCACCGATCAAACTACTT+AGG | + | chr3.1:68221179-68221198 | MS.gene70739:intron | 45.0% | |
| GTAGAATGGAAGTGAGGGAT+TGG | + | chr3.1:68223277-68223296 | MS.gene70739:intron | 45.0% | |
| GTAGTTTGATCGGTGAGCTA+AGG | - | chr3.1:68221177-68221196 | None:intergenic | 45.0% | |
| GTATTAGAGCAACTGCTGCA+TGG | + | chr3.1:68221925-68221944 | MS.gene70739:CDS | 45.0% | |
| TCTCTTGTAAATGAGACCGG+AGG | - | chr3.1:68220774-68220793 | None:intergenic | 45.0% | |
| TTGTTCTATGCTGAAGCTGG+AGG | + | chr3.1:68222604-68222623 | MS.gene70739:CDS | 45.0% | |
| TTTGCATGAGAGGCAGTTGA+GGG | - | chr3.1:68222328-68222347 | None:intergenic | 45.0% | |
| ! | ACGCTGTTTCAGCTTTGACT+CGG | + | chr3.1:68222560-68222579 | MS.gene70739:CDS | 45.0% |
| ! | CTTTTCCTGGAGATCAAGGT+CGG | - | chr3.1:68222912-68222931 | None:intergenic | 45.0% |
| ! | TCACCTTTTCCTGGAGATCA+AGG | - | chr3.1:68222916-68222935 | None:intergenic | 45.0% |
| !! | GTTTGGATGGAGGGTTTTAG+AGG | + | chr3.1:68221425-68221444 | MS.gene70739:intron | 45.0% |
| !! | TCTTGAGCTTGTTGAGCCAT+TGG | + | chr3.1:68220636-68220655 | MS.gene70739:CDS | 45.0% |
| !! | TGAGAGAAGGCACCAACATT+GGG | - | chr3.1:68221643-68221662 | None:intergenic | 45.0% |
| !!! | TTGGATGGAGGGTTTTAGAG+GGG | + | chr3.1:68221427-68221446 | MS.gene70739:intron | 45.0% |
| AGCTGGAGGTTTGATGCTTC+AGG | + | chr3.1:68222618-68222637 | MS.gene70739:CDS | 50.0% | |
| ATAATGGCTGACGGGAAGTG+AGG | - | chr3.1:68220129-68220148 | None:intergenic | 50.0% | |
| ATCGTACCTAGGACCTCCTT+CGG | + | chr3.1:68221147-68221166 | MS.gene70739:intron | 50.0% | |
| CATTGAAGGAAACCCGCCAT+CGG | - | chr3.1:68220209-68220228 | None:intergenic | 50.0% | |
| CGACCTTGATCTCCAGGAAA+AGG | + | chr3.1:68222910-68222929 | MS.gene70739:CDS | 50.0% | |
| CTCCTGTAAATAGGACCGGA+GGG | + | chr3.1:68220893-68220912 | MS.gene70739:intron | 50.0% | |
| GATCCCAGTACTTGTCTCAC+TGG | + | chr3.1:68222275-68222294 | MS.gene70739:intron | 50.0% | |
| GGTTGGGAGAAGATCAATGC+AGG | - | chr3.1:68222224-68222243 | None:intergenic | 50.0% | |
| GTTGTTGTCTGTTTCGGCGA+CGG | - | chr3.1:68220107-68220126 | None:intergenic | 50.0% | |
| GTTTGCATGAGAGGCAGTTG+AGG | - | chr3.1:68222329-68222348 | None:intergenic | 50.0% | |
| TCTCCTGTAAATAGGACCGG+AGG | + | chr3.1:68220892-68220911 | MS.gene70739:intron | 50.0% | |
| TTCAACCGACCTTGATCTCC+AGG | + | chr3.1:68222904-68222923 | MS.gene70739:CDS | 50.0% | |
| TTGCATGAGAGGCAGTTGAG+GGG | - | chr3.1:68222327-68222346 | None:intergenic | 50.0% | |
| !! | CAAACTTGGTGGGCTTCATG+CGG | + | chr3.1:68221872-68221891 | MS.gene70739:CDS | 50.0% |
| !! | CTGAGAGAAGGCACCAACAT+TGG | - | chr3.1:68221644-68221663 | None:intergenic | 50.0% |
| !! | GCATGATTTGATGGCGGATG+AGG | + | chr3.1:68223539-68223558 | MS.gene70739:CDS | 50.0% |
| !! | TGGAACTCGGTGTACTCTCA+AGG | + | chr3.1:68222485-68222504 | MS.gene70739:CDS | 50.0% |
| CGCTCTCATACTCTTCACGG+CGG | + | chr3.1:68220078-68220097 | MS.gene70739:CDS | 55.0% | |
| CTCCCTCCGGTCCTATTTAC+AGG | - | chr3.1:68220898-68220917 | None:intergenic | 55.0% | |
| GCAACTGCTGCATGGGTTCT+TGG | + | chr3.1:68221933-68221952 | MS.gene70739:CDS | 55.0% | |
| GTACACCGAGTTCCAAGACC+TGG | - | chr3.1:68222480-68222499 | None:intergenic | 55.0% | |
| TGAATCCGATCTACTCCCGC+CGG | + | chr3.1:68220165-68220184 | MS.gene70739:CDS | 55.0% | |
| ! | AGGATACTAGGGGAGAGTGC+AGG | - | chr3.1:68222190-68222209 | None:intergenic | 55.0% |
| ! | GGATACTAGGGGAGAGTGCA+GGG | - | chr3.1:68222189-68222208 | None:intergenic | 55.0% |
| !! | CGATGGCGGGTTTCCTTCAA+TGG | + | chr3.1:68220207-68220226 | MS.gene70739:CDS | 55.0% |
| !!! | GATGGAGGGTTTTAGAGGGG+AGG | + | chr3.1:68221430-68221449 | MS.gene70739:intron | 55.0% |
| AGGAAACCCGCCATCGGAGT+CGG | - | chr3.1:68220203-68220222 | None:intergenic | 60.0% | |
| CTCTTTCCGACTCCGATGGC+GGG | + | chr3.1:68220194-68220213 | MS.gene70739:CDS | 60.0% | |
| GAGCTAAGGGACACCGAAGG+AGG | - | chr3.1:68221163-68221182 | None:intergenic | 60.0% | |
| GAGTCGGAAAGAGCGGCATC+CGG | - | chr3.1:68220187-68220206 | None:intergenic | 60.0% | |
| GCCATCGGAGTCGGAAAGAG+CGG | - | chr3.1:68220194-68220213 | None:intergenic | 60.0% | |
| GCTCTTTCCGACTCCGATGG+CGG | + | chr3.1:68220193-68220212 | MS.gene70739:CDS | 60.0% | |
| GGTGAGCTAAGGGACACCGA+AGG | - | chr3.1:68221166-68221185 | None:intergenic | 60.0% | |
| GCCGCTCTTTCCGACTCCGA+TGG | + | chr3.1:68220190-68220209 | MS.gene70739:CDS | 65.0% | |
| GGCATCCGGCGGGAGTAGAT+CGG | - | chr3.1:68220173-68220192 | None:intergenic | 65.0% | |
| GGGACACCGAAGGAGGTCCT+AGG | - | chr3.1:68221156-68221175 | None:intergenic | 65.0% | |
| TCGGAAAGAGCGGCATCCGG+CGG | - | chr3.1:68220184-68220203 | None:intergenic | 65.0% | |
| CGGAAAGAGCGGCATCCGGC+GGG | - | chr3.1:68220183-68220202 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 68220055 | 68223644 | 68220055 | ID=MS.gene70739 |
| chr3.1 | mRNA | 68220055 | 68223644 | 68220055 | ID=MS.gene70739.t1;Parent=MS.gene70739 |
| chr3.1 | exon | 68220055 | 68220253 | 68220055 | ID=MS.gene70739.t1.exon1;Parent=MS.gene70739.t1 |
| chr3.1 | CDS | 68220055 | 68220253 | 68220055 | ID=cds.MS.gene70739.t1;Parent=MS.gene70739.t1 |
| chr3.1 | exon | 68220340 | 68220431 | 68220340 | ID=MS.gene70739.t1.exon2;Parent=MS.gene70739.t1 |
| chr3.1 | CDS | 68220340 | 68220431 | 68220340 | ID=cds.MS.gene70739.t1;Parent=MS.gene70739.t1 |
| chr3.1 | exon | 68220520 | 68220670 | 68220520 | ID=MS.gene70739.t1.exon3;Parent=MS.gene70739.t1 |
| chr3.1 | CDS | 68220520 | 68220670 | 68220520 | ID=cds.MS.gene70739.t1;Parent=MS.gene70739.t1 |
| chr3.1 | exon | 68221865 | 68221992 | 68221865 | ID=MS.gene70739.t1.exon4;Parent=MS.gene70739.t1 |
| chr3.1 | CDS | 68221865 | 68221992 | 68221865 | ID=cds.MS.gene70739.t1;Parent=MS.gene70739.t1 |
| chr3.1 | exon | 68222481 | 68222639 | 68222481 | ID=MS.gene70739.t1.exon5;Parent=MS.gene70739.t1 |
| chr3.1 | CDS | 68222481 | 68222639 | 68222481 | ID=cds.MS.gene70739.t1;Parent=MS.gene70739.t1 |
| chr3.1 | exon | 68222746 | 68222931 | 68222746 | ID=MS.gene70739.t1.exon6;Parent=MS.gene70739.t1 |
| chr3.1 | CDS | 68222746 | 68222931 | 68222746 | ID=cds.MS.gene70739.t1;Parent=MS.gene70739.t1 |
| chr3.1 | exon | 68223432 | 68223644 | 68223432 | ID=MS.gene70739.t1.exon7;Parent=MS.gene70739.t1 |
| chr3.1 | CDS | 68223432 | 68223644 | 68223432 | ID=cds.MS.gene70739.t1;Parent=MS.gene70739.t1 |
| Gene Sequence |
| Protein sequence |
