Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053341.t1 | XP_013467044.1 | 97.5 | 163 | 4 | 0 | 3 | 165 | 40 | 202 | 2.20E-86 | 328.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053341.t1 | O22797 | 72.4 | 163 | 45 | 0 | 3 | 165 | 40 | 202 | 9.9e-67 | 254.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053341.t1 | I3SDL1 | 97.5 | 163 | 4 | 0 | 3 | 165 | 40 | 202 | 1.6e-86 | 328.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053341 | MS.gene074045 | 0.812176 | 4.84E-51 | -1.69E-46 |
| MS.gene053341 | MS.gene25291 | 0.84158 | 4.36E-58 | -1.69E-46 |
| MS.gene053341 | MS.gene31856 | 0.803429 | 3.50E-49 | -1.69E-46 |
| MS.gene053341 | MS.gene36625 | 0.803333 | 3.67E-49 | -1.69E-46 |
| MS.gene053341 | MS.gene55545 | 0.832084 | 1.16E-55 | -1.69E-46 |
| MS.gene053341 | MS.gene70739 | 0.822045 | 2.92E-53 | -1.69E-46 |
| MS.gene053341 | MS.gene83312 | 0.807879 | 4.07E-50 | -1.69E-46 |
| MS.gene053341 | MS.gene94111 | 0.827464 | 1.54E-54 | -1.69E-46 |
| MS.gene053341 | MS.gene99894 | 0.807188 | 5.71E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053341.t1 | MTR_1g041495 | 96.364 | 165 | 6 | 0 | 1 | 165 | 38 | 202 | 1.14e-118 | 333 |
| MS.gene053341.t1 | MTR_1g041495 | 91.379 | 174 | 6 | 1 | 1 | 165 | 38 | 211 | 1.34e-115 | 326 |
| MS.gene053341.t1 | MTR_1g075710 | 84.242 | 165 | 26 | 0 | 1 | 165 | 38 | 202 | 1.44e-104 | 298 |
| MS.gene053341.t1 | MTR_1g075700 | 79.167 | 120 | 25 | 0 | 7 | 126 | 40 | 159 | 1.91e-68 | 206 |
| MS.gene053341.t1 | MTR_1g028960 | 33.333 | 168 | 107 | 1 | 3 | 165 | 56 | 223 | 4.51e-33 | 117 |
| MS.gene053341.t1 | MTR_3g090530 | 36.310 | 168 | 102 | 3 | 3 | 165 | 55 | 222 | 1.47e-31 | 113 |
| MS.gene053341.t1 | MTR_1g028970 | 33.929 | 168 | 105 | 2 | 3 | 165 | 57 | 223 | 6.08e-31 | 111 |
| MS.gene053341.t1 | MTR_3g090530 | 36.420 | 162 | 98 | 3 | 3 | 159 | 55 | 216 | 3.03e-29 | 107 |
| MS.gene053341.t1 | MTR_1g028970 | 33.544 | 158 | 99 | 2 | 3 | 155 | 57 | 213 | 5.46e-28 | 103 |
| MS.gene053341.t1 | MTR_3g090530 | 35.099 | 151 | 93 | 3 | 20 | 165 | 7 | 157 | 1.59e-25 | 95.9 |
| MS.gene053341.t1 | MTR_3g090530 | 35.172 | 145 | 89 | 3 | 20 | 159 | 7 | 151 | 4.43e-23 | 89.7 |
| MS.gene053341.t1 | MTR_3g090530 | 38.182 | 110 | 67 | 1 | 3 | 111 | 55 | 164 | 9.49e-22 | 86.7 |
| MS.gene053341.t1 | MTR_1g028970 | 35.135 | 111 | 72 | 0 | 3 | 113 | 57 | 167 | 1.65e-21 | 86.3 |
| MS.gene053341.t1 | MTR_3g090530 | 36.559 | 93 | 58 | 1 | 20 | 111 | 7 | 99 | 2.75e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053341.t1 | AT2G33470 | 72.393 | 163 | 45 | 0 | 3 | 165 | 40 | 202 | 1.95e-88 | 257 |
| MS.gene053341.t1 | AT2G33470 | 72.393 | 163 | 45 | 0 | 3 | 165 | 40 | 202 | 1.95e-88 | 257 |
| MS.gene053341.t1 | AT3G21260 | 34.940 | 166 | 104 | 1 | 3 | 164 | 67 | 232 | 2.52e-32 | 115 |
| MS.gene053341.t1 | AT1G21360 | 34.337 | 166 | 105 | 1 | 3 | 164 | 57 | 222 | 3.11e-32 | 115 |
| MS.gene053341.t1 | AT1G21360 | 33.750 | 160 | 102 | 1 | 9 | 164 | 1 | 160 | 2.67e-30 | 108 |
| MS.gene053341.t1 | AT3G21260 | 34.014 | 147 | 93 | 1 | 22 | 164 | 2 | 148 | 4.43e-26 | 97.1 |
| MS.gene053341.t1 | AT3G21260 | 32.867 | 143 | 92 | 1 | 26 | 164 | 1 | 143 | 6.05e-24 | 91.7 |
| MS.gene053341.t1 | AT1G21360 | 37.615 | 109 | 68 | 0 | 3 | 111 | 57 | 165 | 2.70e-20 | 83.6 |
Find 34 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGAGCAATGGATTTCT+TGG | 0.230093 | 1.4:+26243671 | MS.gene053341:intron |
| GTTGTACCAATGGACTTCTT+TGG | 0.311548 | 1.4:+26242891 | MS.gene053341:CDS |
| AAAATTTGTGATTCTGTTCA+AGG | 0.334873 | 1.4:-26244728 | None:intergenic |
| CTCTGAAGAAGTGGCATGGC+TGG | 0.367597 | 1.4:+26243769 | MS.gene053341:CDS |
| CAGAGCAATGGATTTCTTGG+TGG | 0.402509 | 1.4:+26243674 | MS.gene053341:intron |
| AAGAAGTCCATTGGTACAAC+TGG | 0.405217 | 1.4:-26242888 | None:intergenic |
| ATTTAATATCCTGTACAGTT+TGG | 0.405220 | 1.4:+26242826 | MS.gene053341:CDS |
| TCCATGAACTTCTTCCTGTC+TGG | 0.406955 | 1.4:-26244639 | None:intergenic |
| AAGAAGTTCATGGAGGTGAT+AGG | 0.440267 | 1.4:+26244648 | MS.gene053341:CDS |
| GATATTAAATCTCGATGGAT+TGG | 0.460420 | 1.4:-26242813 | None:intergenic |
| TCAAAATTTGATTGAGCATG+AGG | 0.464706 | 1.4:+26243704 | MS.gene053341:CDS |
| CTTGTTGTATGCATCTGTAC+AGG | 0.481715 | 1.4:-26243745 | None:intergenic |
| TCATGAAGCTTGCTCCAGAC+AGG | 0.515515 | 1.4:+26244625 | MS.gene053341:CDS |
| TCTGAAAATCTTCAGAGCAA+TGG | 0.529722 | 1.4:+26243662 | MS.gene053341:intron |
| CACCTATGTCAGATTTAACA+AGG | 0.530234 | 1.4:-26242220 | None:intergenic |
| CTACTTGTACCAAACTGTAC+AGG | 0.540947 | 1.4:-26242835 | None:intergenic |
| ATGGACTTCTTTGGCTAACA+AGG | 0.540969 | 1.4:+26242900 | MS.gene053341:CDS |
| TCCAGACAGGAAGAAGTTCA+TGG | 0.547330 | 1.4:+26244638 | MS.gene053341:CDS |
| TCTGTACAGGCTTGTGACAT+TGG | 0.558578 | 1.4:-26243732 | None:intergenic |
| ACAACAAGACTCTGAAGAAG+TGG | 0.563236 | 1.4:+26243760 | MS.gene053341:CDS |
| TTGTGATTCTGTTCAAGGAG+AGG | 0.566782 | 1.4:-26244723 | None:intergenic |
| TGACATAGGTGGTAATATAA+CGG | 0.567236 | 1.4:+26242232 | MS.gene053341:CDS |
| TACAGGATATTAAATCTCGA+TGG | 0.572101 | 1.4:-26242818 | None:intergenic |
| TCATCATCCAGTTGTACCAA+TGG | 0.573396 | 1.4:+26242881 | MS.gene053341:CDS |
| TGTTAGCCAAAGAAGTCCAT+TGG | 0.573467 | 1.4:-26242897 | None:intergenic |
| ATTTGATTGAGCATGAGGAA+TGG | 0.587771 | 1.4:+26243709 | MS.gene053341:CDS |
| ATGGAGGTGATAGGAGGCAC+CGG | 0.603749 | 1.4:+26244657 | MS.gene053341:CDS |
| AATGTCAGCATTGATATCAC+CGG | 0.606514 | 1.4:-26244676 | None:intergenic |
| AAGTTCATGGAGGTGATAGG+AGG | 0.623302 | 1.4:+26244651 | MS.gene053341:CDS |
| ACCCTTGTTAAATCTGACAT+AGG | 0.626109 | 1.4:+26242218 | MS.gene053341:CDS |
| AAGACTCTGAAGAAGTGGCA+TGG | 0.632909 | 1.4:+26243765 | MS.gene053341:CDS |
| CTTGTTAAATCTGACATAGG+TGG | 0.650482 | 1.4:+26242221 | MS.gene053341:CDS |
| ACCTATGTCAGATTTAACAA+GGG | 0.688070 | 1.4:-26242219 | None:intergenic |
| AGACAGGAAGAAGTTCATGG+AGG | 0.779343 | 1.4:+26244641 | MS.gene053341:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTTAGAAAATATAC+AGG | + | chr1.4:26244884-26244903 | MS.gene053341:intron | 10.0% |
| !! | AAATTCAATTAGAAAGTAAA+CGG | - | chr1.4:26244941-26244960 | None:intergenic | 15.0% |
| !! | AATAACAATAATATAAGCTA+AGG | - | chr1.4:26243480-26243499 | None:intergenic | 15.0% |
| !! | TCATATTCTTAATTCTTATT+TGG | + | chr1.4:26243444-26243463 | MS.gene053341:intron | 15.0% |
| !!! | ATTTTCAAAATATTGTTTTC+AGG | - | chr1.4:26245078-26245097 | None:intergenic | 15.0% |
| !!! | TCAATTTTTACTTTGTATTT+GGG | + | chr1.4:26244961-26244980 | MS.gene053341:intron | 15.0% |
| !!! | TTAACTTTTCATACAATTAT+TGG | + | chr1.4:26242692-26242711 | MS.gene053341:intron | 15.0% |
| !!! | TTCAATTTTTACTTTGTATT+TGG | + | chr1.4:26244960-26244979 | MS.gene053341:intron | 15.0% |
| !!! | TTTTCAAAATATTGTTTTCA+GGG | - | chr1.4:26245077-26245096 | None:intergenic | 15.0% |
| !! | AATTCAATTAGAAAGTAAAC+GGG | - | chr1.4:26244940-26244959 | None:intergenic | 20.0% |
| !! | ATTCAGACTCTTAAATTATT+TGG | + | chr1.4:26244038-26244057 | MS.gene053341:intron | 20.0% |
| !! | GAAAAGTTAAATCATTAGAA+GGG | - | chr1.4:26242682-26242701 | None:intergenic | 20.0% |
| !! | TAGACGTAAAATACAATATA+TGG | + | chr1.4:26243144-26243163 | MS.gene053341:intron | 20.0% |
| !! | TGAAAAGTTAAATCATTAGA+AGG | - | chr1.4:26242683-26242702 | None:intergenic | 20.0% |
| !! | TTTCTAACTCAAATCTATTA+TGG | - | chr1.4:26244369-26244388 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATTCAAAC+AGG | - | chr1.4:26244065-26244084 | None:intergenic | 20.0% |
| !!! | TATTCTTAATTCTTATTTGG+TGG | + | chr1.4:26243447-26243466 | MS.gene053341:intron | 20.0% |
| !!! | TTTTAAATTGGATGATATGA+AGG | + | chr1.4:26245340-26245359 | MS.gene053341:CDS | 20.0% |
| ! | AAAATTTGTGATTCTGTTCA+AGG | - | chr1.4:26244731-26244750 | None:intergenic | 25.0% |
| ! | AAAGTTAAATGAAAACTGCA+TGG | - | chr1.4:26242939-26242958 | None:intergenic | 25.0% |
| ! | AAGATATCTCTAGTAATTTC+AGG | + | chr1.4:26244755-26244774 | MS.gene053341:intron | 25.0% |
| ! | ATTCACACAATAGCTAATAA+GGG | - | chr1.4:26243986-26244005 | None:intergenic | 25.0% |
| ! | ATTTAATATCCTGTACAGTT+TGG | + | chr1.4:26242826-26242845 | MS.gene053341:CDS | 25.0% |
| ! | CATAAAAGTGACAAAATTGA+GGG | + | chr1.4:26243275-26243294 | MS.gene053341:intron | 25.0% |
| ! | CGTTCATGCTATATTATTTA+TGG | + | chr1.4:26243622-26243641 | MS.gene053341:intron | 25.0% |
| ! | GTATTATAATAGAGAGAAGA+TGG | + | chr1.4:26245020-26245039 | MS.gene053341:intron | 25.0% |
| ! | TAGAACCTAATAATAAGCTA+AGG | - | chr1.4:26243597-26243616 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCAAACTAAAG+AGG | + | chr1.4:26242656-26242675 | MS.gene053341:intron | 25.0% |
| ! | TCATAAAAGTGACAAAATTG+AGG | + | chr1.4:26243274-26243293 | MS.gene053341:intron | 25.0% |
| ! | TGTTTAATCTTGTTACACAT+TGG | + | chr1.4:26243884-26243903 | MS.gene053341:intron | 25.0% |
| !! | GTTTACTAAACTTACTCTTT+TGG | + | chr1.4:26245307-26245326 | MS.gene053341:intron | 25.0% |
| !! | TGAACAGAATCACAAATTTT+TGG | + | chr1.4:26244731-26244750 | MS.gene053341:CDS | 25.0% |
| !! | TGCAAGAAAAAATTGCTATT+TGG | - | chr1.4:26245286-26245305 | None:intergenic | 25.0% |
| !!! | GCATTTTCAAATTGCTTTTA+GGG | + | chr1.4:26245118-26245137 | MS.gene053341:intron | 25.0% |
| !!! | TGCATTTTCAAATTGCTTTT+AGG | + | chr1.4:26245117-26245136 | MS.gene053341:intron | 25.0% |
| AACCGAAAAGAACAAAACAA+GGG | - | chr1.4:26244522-26244541 | None:intergenic | 30.0% | |
| AACCTAAGAGAATGTATTTC+TGG | + | chr1.4:26245048-26245067 | MS.gene053341:intron | 30.0% | |
| AAGCTATAAGCTGTTTACAT+AGG | + | chr1.4:26244164-26244183 | MS.gene053341:intron | 30.0% | |
| AATAAACTCAAGTGTGAAAC+CGG | + | chr1.4:26243025-26243044 | MS.gene053341:intron | 30.0% | |
| AATTGTATATCGACAGTGTT+AGG | + | chr1.4:26244913-26244932 | MS.gene053341:intron | 30.0% | |
| ACCTATGTCAGATTTAACAA+GGG | - | chr1.4:26242222-26242241 | None:intergenic | 30.0% | |
| ACTGTTACTATTAGTGTTGT+TGG | + | chr1.4:26243533-26243552 | MS.gene053341:intron | 30.0% | |
| AGCTATAAGCTGTTTACATA+GGG | + | chr1.4:26244165-26244184 | MS.gene053341:intron | 30.0% | |
| ATGGAACTGAATATGCATTT+GGG | + | chr1.4:26244574-26244593 | MS.gene053341:intron | 30.0% | |
| ATTGTATATCGACAGTGTTA+GGG | + | chr1.4:26244914-26244933 | MS.gene053341:intron | 30.0% | |
| CAAGACCTTAGCTTATTATT+AGG | + | chr1.4:26243589-26243608 | MS.gene053341:intron | 30.0% | |
| CATTCACACAATAGCTAATA+AGG | - | chr1.4:26243987-26244006 | None:intergenic | 30.0% | |
| GAAAATTACGATGTTCTACT+TGG | - | chr1.4:26244316-26244335 | None:intergenic | 30.0% | |
| GAGTCATTGTCACATATTAA+GGG | - | chr1.4:26245181-26245200 | None:intergenic | 30.0% | |
| GATATTAAATCTCGATGGAT+TGG | - | chr1.4:26242816-26242835 | None:intergenic | 30.0% | |
| GGAATGCAAATTCAATTAGA+CGG | + | chr1.4:26243165-26243184 | MS.gene053341:intron | 30.0% | |
| GTGAATGATGGTTAATGATA+TGG | + | chr1.4:26244806-26244825 | MS.gene053341:intron | 30.0% | |
| TACAGGATATTAAATCTCGA+TGG | - | chr1.4:26242821-26242840 | None:intergenic | 30.0% | |
| TATGGAACTGAATATGCATT+TGG | + | chr1.4:26244573-26244592 | MS.gene053341:intron | 30.0% | |
| TCAAAATTTGATTGAGCATG+AGG | + | chr1.4:26243704-26243723 | MS.gene053341:CDS | 30.0% | |
| TGACATAGGTGGTAATATAA+CGG | + | chr1.4:26242232-26242251 | MS.gene053341:CDS | 30.0% | |
| TGAGTCATTGTCACATATTA+AGG | - | chr1.4:26245182-26245201 | None:intergenic | 30.0% | |
| TGTTCTTTCTGACTCATATT+TGG | + | chr1.4:26242270-26242289 | MS.gene053341:intron | 30.0% | |
| TTCACACAATAGCTAATAAG+GGG | - | chr1.4:26243985-26244004 | None:intergenic | 30.0% | |
| TTCCAGAAATACATTCTCTT+AGG | - | chr1.4:26245053-26245072 | None:intergenic | 30.0% | |
| ! | GTGTTGAATGTTTAACTTAC+AGG | + | chr1.4:26244599-26244618 | MS.gene053341:intron | 30.0% |
| ! | GTTTTCATAAAAGCTCTGTT+TGG | + | chr1.4:26242404-26242423 | MS.gene053341:intron | 30.0% |
| ! | TATTGATGATCACTAATGCA+TGG | + | chr1.4:26244781-26244800 | MS.gene053341:intron | 30.0% |
| !! | CATGTGACTTGTTATATGAT+AGG | - | chr1.4:26243234-26243253 | None:intergenic | 30.0% |
| !! | GTTCTGTTTGAGTTTTTATC+TGG | + | chr1.4:26242382-26242401 | MS.gene053341:intron | 30.0% |
| !!! | CTATACCATATTGATTTTCC+TGG | + | chr1.4:26242765-26242784 | MS.gene053341:intron | 30.0% |
| !!! | TTCCCTTGTTTTGTTCTTTT+CGG | + | chr1.4:26244517-26244536 | MS.gene053341:intron | 30.0% |
| AAGAACTTGCAAGACTGTTT+GGG | - | chr1.4:26242620-26242639 | None:intergenic | 35.0% | |
| AAGCTATCGTGTTGAGTTTA+TGG | + | chr1.4:26242541-26242560 | MS.gene053341:intron | 35.0% | |
| AAGTTCATGCTTTGTCTTTC+CGG | - | chr1.4:26243047-26243066 | None:intergenic | 35.0% | |
| ACACGTTAACAGAAAGTTGT+TGG | + | chr1.4:26245211-26245230 | MS.gene053341:intron | 35.0% | |
| ACCCTTGTTAAATCTGACAT+AGG | + | chr1.4:26242218-26242237 | MS.gene053341:CDS | 35.0% | |
| AGATTGTTTGGAAGAGCTTA+GGG | - | chr1.4:26244252-26244271 | None:intergenic | 35.0% | |
| ATAGCACGATACAGAAAAAG+AGG | - | chr1.4:26242344-26242363 | None:intergenic | 35.0% | |
| ATTTGATTGAGCATGAGGAA+TGG | + | chr1.4:26243709-26243728 | MS.gene053341:CDS | 35.0% | |
| CACCTATGTCAGATTTAACA+AGG | - | chr1.4:26242223-26242242 | None:intergenic | 35.0% | |
| CTTGTTAAATCTGACATAGG+TGG | + | chr1.4:26242221-26242240 | MS.gene053341:CDS | 35.0% | |
| GAACCGAAAAGAACAAAACA+AGG | - | chr1.4:26244523-26244542 | None:intergenic | 35.0% | |
| GGGGAAAGATTGTAGAAAAA+TGG | - | chr1.4:26243965-26243984 | None:intergenic | 35.0% | |
| TAAGAACTTGCAAGACTGTT+TGG | - | chr1.4:26242621-26242640 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAGATTGTT+TGG | - | chr1.4:26244264-26244283 | None:intergenic | 35.0% | |
| TAATGCATGGATGTGAATGA+TGG | + | chr1.4:26244794-26244813 | MS.gene053341:intron | 35.0% | |
| TACTCAACTTATCTTCCTCA+AGG | + | chr1.4:26243400-26243419 | MS.gene053341:intron | 35.0% | |
| TAGAGTGAGAATGCATACAT+AGG | - | chr1.4:26242748-26242767 | None:intergenic | 35.0% | |
| TAGATCTCTTGAATGTTCCT+AGG | + | chr1.4:26243909-26243928 | MS.gene053341:intron | 35.0% | |
| TAGGAACATTCAAGAGATCT+AGG | - | chr1.4:26243910-26243929 | None:intergenic | 35.0% | |
| TCACACAATAGCTAATAAGG+GGG | - | chr1.4:26243984-26244003 | None:intergenic | 35.0% | |
| TCGTGTTTATGTCGAACAAA+TGG | + | chr1.4:26243070-26243089 | MS.gene053341:intron | 35.0% | |
| TCTGAAAATCTTCAGAGCAA+TGG | + | chr1.4:26243662-26243681 | MS.gene053341:intron | 35.0% | |
| TGCAATTCAATGCATTTCCT+AGG | - | chr1.4:26243929-26243948 | None:intergenic | 35.0% | |
| TTACTTTGTATTTGGGTGAC+TGG | + | chr1.4:26244968-26244987 | MS.gene053341:intron | 35.0% | |
| TTCCCGATGTTAGAACTAAA+CGG | + | chr1.4:26245154-26245173 | MS.gene053341:intron | 35.0% | |
| ! | CAAATGGTTAGCTAGTGTTA+TGG | + | chr1.4:26243086-26243105 | MS.gene053341:intron | 35.0% |
| ! | CACTAGTTTGTGGTCAAAAT+TGG | + | chr1.4:26243204-26243223 | MS.gene053341:intron | 35.0% |
| !! | AATGTCAGCATTGATATCAC+CGG | - | chr1.4:26244679-26244698 | None:intergenic | 35.0% |
| !! | TAAACTTACTCTTTTGGTGC+AGG | + | chr1.4:26245313-26245332 | MS.gene053341:intron | 35.0% |
| !!! | CTTTGTTTTTCCATCAAGGA+TGG | + | chr1.4:26244542-26244561 | MS.gene053341:intron | 35.0% |
| !!! | GCTCTGAAGATTTTCAGATT+GGG | - | chr1.4:26243660-26243679 | None:intergenic | 35.0% |
| !!! | GGTTCTTTGTTTTTCCATCA+AGG | + | chr1.4:26244538-26244557 | MS.gene053341:intron | 35.0% |
| !!! | TGCTCTGAAGATTTTCAGAT+TGG | - | chr1.4:26243661-26243680 | None:intergenic | 35.0% |
| AAGAAGTCCATTGGTACAAC+TGG | - | chr1.4:26242891-26242910 | None:intergenic | 40.0% | |
| AAGAAGTTCATGGAGGTGAT+AGG | + | chr1.4:26244648-26244667 | MS.gene053341:CDS | 40.0% | |
| ATGGACTTCTTTGGCTAACA+AGG | + | chr1.4:26242900-26242919 | MS.gene053341:CDS | 40.0% | |
| CATATGCTATCTAGCAGCTT+TGG | + | chr1.4:26242311-26242330 | MS.gene053341:intron | 40.0% | |
| CTACTTGTACCAAACTGTAC+AGG | - | chr1.4:26242838-26242857 | None:intergenic | 40.0% | |
| CTCTGCCAGGAAAATCAATA+TGG | - | chr1.4:26242773-26242792 | None:intergenic | 40.0% | |
| GAGATTGTTTGGAAGAGCTT+AGG | - | chr1.4:26244253-26244272 | None:intergenic | 40.0% | |
| TACACTCTAACCATCCTTGA+TGG | - | chr1.4:26244555-26244574 | None:intergenic | 40.0% | |
| TCAAGGATGGTTAGAGTGTA+TGG | + | chr1.4:26244555-26244574 | MS.gene053341:intron | 40.0% | |
| TCATCATCCAGTTGTACCAA+TGG | + | chr1.4:26242881-26242900 | MS.gene053341:CDS | 40.0% | |
| TCCCGATGTTAGAACTAAAC+GGG | + | chr1.4:26245155-26245174 | MS.gene053341:intron | 40.0% | |
| TGTTAGCCAAAGAAGTCCAT+TGG | - | chr1.4:26242900-26242919 | None:intergenic | 40.0% | |
| TTGTGATTCTGTTCAAGGAG+AGG | - | chr1.4:26244726-26244745 | None:intergenic | 40.0% | |
| ! | ACAACAAGACTCTGAAGAAG+TGG | + | chr1.4:26243760-26243779 | MS.gene053341:CDS | 40.0% |
| ! | CTTCAGAGCAATGGATTTCT+TGG | + | chr1.4:26243671-26243690 | MS.gene053341:intron | 40.0% |
| ! | CTTGTTGTATGCATCTGTAC+AGG | - | chr1.4:26243748-26243767 | None:intergenic | 40.0% |
| ! | GTTGTACCAATGGACTTCTT+TGG | + | chr1.4:26242891-26242910 | MS.gene053341:CDS | 40.0% |
| ! | TTGATTTTCCTGGCAGAGAT+TGG | + | chr1.4:26242775-26242794 | MS.gene053341:intron | 40.0% |
| !! | CTAACATCGGGAAGGTATTA+CGG | - | chr1.4:26245147-26245166 | None:intergenic | 40.0% |
| !! | GTTTAGTTCTAACATCGGGA+AGG | - | chr1.4:26245155-26245174 | None:intergenic | 40.0% |
| AAGTTCATGGAGGTGATAGG+AGG | + | chr1.4:26244651-26244670 | MS.gene053341:CDS | 45.0% | |
| AGACAGGAAGAAGTTCATGG+AGG | + | chr1.4:26244641-26244660 | MS.gene053341:CDS | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | - | chr1.4:26242609-26242628 | None:intergenic | 45.0% | |
| AGAGAGAAGGGAAAACTGCA+TGG | - | chr1.4:26244482-26244501 | None:intergenic | 45.0% | |
| AGGCGGGCAATCTTATTCTT+AGG | + | chr1.4:26245256-26245275 | MS.gene053341:intron | 45.0% | |
| CAAAGTTTCCAATCTCTGCC+AGG | - | chr1.4:26242786-26242805 | None:intergenic | 45.0% | |
| CAAGGGAACATTGTCTGAGA+CGG | - | chr1.4:26244505-26244524 | None:intergenic | 45.0% | |
| CGGGCAATCTTATTCTTAGG+GGG | + | chr1.4:26245259-26245278 | MS.gene053341:intron | 45.0% | |
| GCGGGCAATCTTATTCTTAG+GGG | + | chr1.4:26245258-26245277 | MS.gene053341:intron | 45.0% | |
| GCTAGAGAGCTTGGAGAAAT+AGG | + | chr1.4:26244191-26244210 | MS.gene053341:intron | 45.0% | |
| GGCGGGCAATCTTATTCTTA+GGG | + | chr1.4:26245257-26245276 | MS.gene053341:intron | 45.0% | |
| GTATCGCAGAAAGAGGTTTG+AGG | + | chr1.4:26245236-26245255 | MS.gene053341:intron | 45.0% | |
| GTTGGTTGTATCGCAGAAAG+AGG | + | chr1.4:26245229-26245248 | MS.gene053341:intron | 45.0% | |
| TCCAGACAGGAAGAAGTTCA+TGG | + | chr1.4:26244638-26244657 | MS.gene053341:CDS | 45.0% | |
| TCCATGAACTTCTTCCTGTC+TGG | - | chr1.4:26244642-26244661 | None:intergenic | 45.0% | |
| TCTGTACAGGCTTGTGACAT+TGG | - | chr1.4:26243735-26243754 | None:intergenic | 45.0% | |
| TTGAGGGAGATGCAAATTGC+TGG | + | chr1.4:26243291-26243310 | MS.gene053341:intron | 45.0% | |
| ! | AAGACTCTGAAGAAGTGGCA+TGG | + | chr1.4:26243765-26243784 | MS.gene053341:CDS | 45.0% |
| ! | CACACGTAAGCACTAGTTTG+TGG | + | chr1.4:26243194-26243213 | MS.gene053341:intron | 45.0% |
| ! | CAGAGCAATGGATTTCTTGG+TGG | + | chr1.4:26243674-26243693 | MS.gene053341:intron | 45.0% |
| !! | GCCCGTTTAGTTCTAACATC+GGG | - | chr1.4:26245159-26245178 | None:intergenic | 45.0% |
| !! | GGCCCGTTTAGTTCTAACAT+CGG | - | chr1.4:26245160-26245179 | None:intergenic | 45.0% |
| !! | GGTGCAGGCACGTTTTAAAT+TGG | + | chr1.4:26245328-26245347 | MS.gene053341:intron | 45.0% |
| !! | TTCCTCAAGGTGTTGAGTTG+AGG | + | chr1.4:26243413-26243432 | MS.gene053341:intron | 45.0% |
| ATAGGGCATGCTAGAGAGCT+TGG | + | chr1.4:26244182-26244201 | MS.gene053341:intron | 50.0% | |
| TCGCAGAAAGAGGTTTGAGG+CGG | + | chr1.4:26245239-26245258 | MS.gene053341:intron | 50.0% | |
| TGCCTCAACTCAACACCTTG+AGG | - | chr1.4:26243418-26243437 | None:intergenic | 50.0% | |
| ! | TCATGAAGCTTGCTCCAGAC+AGG | + | chr1.4:26244625-26244644 | MS.gene053341:CDS | 50.0% |
| ! | TGTCTGAGACGGAGAGAGAA+GGG | - | chr1.4:26244494-26244513 | None:intergenic | 50.0% |
| ! | TTGTCTGAGACGGAGAGAGA+AGG | - | chr1.4:26244495-26244514 | None:intergenic | 50.0% |
| ! | ATGGAGGTGATAGGAGGCAC+CGG | + | chr1.4:26244657-26244676 | MS.gene053341:CDS | 55.0% |
| ! | CGCAGAAAGAGGTTTGAGGC+GGG | + | chr1.4:26245240-26245259 | MS.gene053341:intron | 55.0% |
| ! | CTCTGAAGAAGTGGCATGGC+TGG | + | chr1.4:26243769-26243788 | MS.gene053341:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 26242191 | 26245370 | 26242191 | ID=MS.gene053341 |
| chr1.4 | mRNA | 26242191 | 26245370 | 26242191 | ID=MS.gene053341.t1;Parent=MS.gene053341 |
| chr1.4 | exon | 26242191 | 26242253 | 26242191 | ID=MS.gene053341.t1.exon1;Parent=MS.gene053341.t1 |
| chr1.4 | CDS | 26242191 | 26242253 | 26242191 | ID=cds.MS.gene053341.t1;Parent=MS.gene053341.t1 |
| chr1.4 | exon | 26242791 | 26242921 | 26242791 | ID=MS.gene053341.t1.exon2;Parent=MS.gene053341.t1 |
| chr1.4 | CDS | 26242791 | 26242921 | 26242791 | ID=cds.MS.gene053341.t1;Parent=MS.gene053341.t1 |
| chr1.4 | exon | 26243677 | 26243812 | 26243677 | ID=MS.gene053341.t1.exon3;Parent=MS.gene053341.t1 |
| chr1.4 | CDS | 26243677 | 26243812 | 26243677 | ID=cds.MS.gene053341.t1;Parent=MS.gene053341.t1 |
| chr1.4 | exon | 26244621 | 26244752 | 26244621 | ID=MS.gene053341.t1.exon4;Parent=MS.gene053341.t1 |
| chr1.4 | CDS | 26244621 | 26244752 | 26244621 | ID=cds.MS.gene053341.t1;Parent=MS.gene053341.t1 |
| chr1.4 | exon | 26245335 | 26245370 | 26245335 | ID=MS.gene053341.t1.exon5;Parent=MS.gene053341.t1 |
| chr1.4 | CDS | 26245335 | 26245370 | 26245335 | ID=cds.MS.gene053341.t1;Parent=MS.gene053341.t1 |
| Gene Sequence |
| Protein sequence |
