AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70814

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70814.t1 MTR_1g081180 95.198 479 17 4 1 478 84 557 0.0 926
MS.gene70814.t1 MTR_7g114860 46.485 441 154 16 3 428 106 479 5.73e-105 321
MS.gene70814.t1 MTR_1g098900 35.374 294 159 7 146 426 266 541 1.05e-47 174
MS.gene70814.t1 MTR_1g098900 40.000 100 57 2 326 425 46 142 3.10e-16 82.0
MS.gene70814.t1 MTR_1g098900 43.529 85 43 1 21 100 58 142 2.55e-14 75.9
MS.gene70814.t1 MTR_2g026725 34.043 282 154 6 174 449 117 372 3.18e-37 140
MS.gene70814.t1 MTR_1g098870 34.363 259 136 4 171 428 236 461 3.17e-35 138
MS.gene70814.t1 MTR_1g098870 45.882 85 41 1 21 100 56 140 8.45e-15 77.0
MS.gene70814.t1 MTR_1g098870 40.217 92 52 2 337 428 55 143 3.57e-14 75.1
MS.gene70814.t1 MTR_6g035370 59.783 92 35 1 337 428 464 553 1.04e-27 117
MS.gene70814.t1 MTR_6g035370 40.860 93 52 2 335 427 53 142 1.75e-15 79.3
MS.gene70814.t1 MTR_6g035370 42.353 85 44 1 21 100 56 140 3.94e-14 75.1
MS.gene70814.t1 MTR_1g060990 29.289 239 150 7 21 244 132 366 2.65e-18 87.8
MS.gene70814.t1 MTR_1g060990 39.785 93 52 3 337 428 131 220 1.08e-12 70.5
MS.gene70814.t1 MTR_1g492790 36.090 133 72 4 300 422 68 197 2.57e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70814.t1 AT5G28300 41.852 540 197 17 20 473 102 610 3.28e-102 318
MS.gene70814.t1 AT1G76890 38.806 268 130 4 162 428 252 486 2.04e-47 172
MS.gene70814.t1 AT1G76890 46.591 88 44 2 335 422 39 123 1.46e-16 82.8
MS.gene70814.t1 AT1G76890 45.783 83 40 1 21 98 42 124 3.64e-14 75.5
MS.gene70814.t1 AT1G76880 58.696 92 36 1 337 428 408 497 2.26e-28 119
MS.gene70814.t1 AT1G76880 39.048 105 61 2 335 439 59 160 3.12e-15 78.6
MS.gene70814.t1 AT1G76880 44.706 85 42 1 21 100 62 146 9.89e-13 70.9
MS.gene70814.t1 AT1G33240 51.786 112 43 2 337 439 435 544 8.34e-27 114
MS.gene70814.t1 AT1G33240 43.820 89 47 2 337 425 62 147 3.57e-17 84.7
MS.gene70814.t1 AT1G33240 45.882 85 41 1 21 100 63 147 1.62e-16 82.8
MS.gene70814.t1 AT1G33240 51.786 112 43 2 337 439 435 544 9.27e-27 114
MS.gene70814.t1 AT1G33240 43.820 89 47 2 337 425 62 147 3.56e-17 84.7
MS.gene70814.t1 AT1G33240 45.882 85 41 1 21 100 63 147 2.15e-16 82.4
MS.gene70814.t1 AT1G33240 51.786 112 43 2 337 439 396 505 9.71e-27 114
MS.gene70814.t1 AT5G47660 33.209 268 131 12 159 426 169 388 3.29e-19 89.7
MS.gene70814.t1 AT3G10000 40.000 95 54 2 337 430 88 180 1.27e-14 76.3
MS.gene70814.t1 AT5G03680 42.857 91 48 3 337 426 119 206 9.52e-14 73.9
MS.gene70814.t1 AT3G10000 25.714 175 108 5 257 430 17 170 9.91e-12 67.4

Find 89 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGATTTGAAGTGTTTA+AGG 0.195477 1.2:+61151189 MS.gene70814:CDS
GTCTTTGATCTCTTTCAATT+TGG 0.216907 1.2:-61150286 None:intergenic
ATAAGGCTATATGAAGAAAT+AGG 0.236435 1.2:-61151649 None:intergenic
CTCTCTCGCTGCTCGATATA+AGG 0.299308 1.2:-61151666 None:intergenic
TCCTTCTTCTTCTACTACTT+TGG 0.306363 1.2:+61151603 MS.gene70814:CDS
AATGCCAACACTTCATCTTT+TGG 0.317647 1.2:-61151709 None:intergenic
AATCATAATCAAAATAGTTT+TGG 0.326250 1.2:+61150935 MS.gene70814:CDS
AGGGTTGAGCTAGGGTTTAC+AGG 0.337022 1.2:-61151580 None:intergenic
TTTCAAGAGTTTCCGGATTA+GGG 0.337138 1.2:-61151540 None:intergenic
TCACAAGGAATGTTGGAGTT+AGG 0.345818 1.2:+61151811 MS.gene70814:CDS
ACATGTTCCCAAGTGAAATC+TGG 0.352061 1.2:-61150395 None:intergenic
GAACAAAGAGCTTGAGTTGA+TGG 0.361917 1.2:+61151351 MS.gene70814:CDS
GAGCTAGGGTTTACAGGTAT+TGG 0.369227 1.2:-61151574 None:intergenic
GATAGATTTGAAGTGTTTAA+GGG 0.370463 1.2:+61151190 MS.gene70814:CDS
AGCAGCGAGAGAGACGATAT+TGG 0.377007 1.2:+61151676 MS.gene70814:CDS
GAAGAAGGAAGGGTTGAGCT+AGG 0.386310 1.2:-61151589 None:intergenic
CAACAACAAGGCACCACTTT+GGG 0.393210 1.2:+61151780 MS.gene70814:CDS
TTCTTCTTCTACTACTTTGG+TGG 0.410965 1.2:+61151606 MS.gene70814:CDS
AGTTTAGTAGAGAAGAAGCT+TGG 0.425700 1.2:+61151305 MS.gene70814:CDS
TTGAGCAATCTTTATAATCA+AGG 0.426028 1.2:+61151958 MS.gene70814:CDS
GAGAAGAAGAGGAAAAGATC+AGG 0.430204 1.2:+61151163 MS.gene70814:CDS
TAAGGCTATATGAAGAAATA+GGG 0.437015 1.2:-61151648 None:intergenic
GAGAATTTCACAAGGAATGT+TGG 0.441400 1.2:+61151804 MS.gene70814:CDS
TTCCTCAACTCATTGATCCT+TGG 0.453786 1.2:+61150315 MS.gene70814:CDS
CAACAACAACAATGAAGAAA+AGG 0.456418 1.2:+61151747 MS.gene70814:CDS
CACCTGCACCAGCACCATCT+TGG 0.460031 1.2:-61152077 None:intergenic
AAATCTAGTTGAGGCTGAAA+AGG 0.460400 1.2:+61151024 MS.gene70814:CDS
AAGAAGGAAGGGTTGAGCTA+GGG 0.460441 1.2:-61151588 None:intergenic
TTGCTCAATAGATGAAAGTA+AGG 0.463276 1.2:-61151943 None:intergenic
GAGGTTTATCAAGGTGGTGG+GGG 0.479843 1.2:+61150989 MS.gene70814:CDS
GAACGAGGTGCAAGACAAAA+CGG 0.480853 1.2:+61151048 MS.gene70814:CDS
CTCAAGTGGGGCCTCCAAGC+TGG 0.484767 1.2:+61152106 MS.gene70814:CDS
TTCAAGAATGGATGATGTAT+TGG 0.485834 1.2:+61151090 MS.gene70814:CDS
CAAAGGATGCTAATAGGAAA+AGG 0.488346 1.2:+61151899 MS.gene70814:CDS
GCAACAACAAGGCACCACTT+TGG 0.490808 1.2:+61151779 MS.gene70814:CDS
GTCAAAGAAAAGTGAAGAAG+AGG 0.493141 1.2:+61151114 MS.gene70814:CDS
TGAAGATGACATTGAAGCTA+AGG 0.499602 1.2:-61151458 None:intergenic
GAAGAAGAGGTAGTTGAGAA+AGG 0.502624 1.2:+61151127 MS.gene70814:CDS
GCACATGAACAAGCTATTGC+TGG 0.507249 1.2:+61151373 MS.gene70814:CDS
CATGTTCCCAAGTGAAATCT+GGG 0.514235 1.2:-61150394 None:intergenic
GCAGGTGAGTCTTCTCAAGT+GGG 0.514949 1.2:+61152093 MS.gene70814:CDS
GTTGGTTCCCAGATTTCACT+TGG 0.516402 1.2:+61150387 MS.gene70814:CDS
GCACTCACAAAACCCTAATC+CGG 0.519084 1.2:+61151528 MS.gene70814:CDS
GAAGAGGTTTATCAAGGTGG+TGG 0.520513 1.2:+61150986 MS.gene70814:CDS
AACCAAGATGGTGCTGGTGC+AGG 0.525566 1.2:+61152075 MS.gene70814:CDS
GTTTGTTACTGAGCTGGAAG+AGG 0.529219 1.2:+61150970 MS.gene70814:CDS
TGCAGGTGAGTCTTCTCAAG+TGG 0.532154 1.2:+61152092 MS.gene70814:CDS
AAGTAGTAGAAGAAGAAGGA+AGG 0.534716 1.2:-61151600 None:intergenic
GAGACGATATTGGTAGAAGA+TGG 0.544390 1.2:+61151686 MS.gene70814:CDS
TGGGAACCAACTCTCCATGC+TGG 0.546340 1.2:-61150375 None:intergenic
CAAAGAGGTGCAAAGAGAAG+TGG 0.549838 1.2:+61151848 MS.gene70814:CDS
TGTAGAGGAGGATTCAAGAA+TGG 0.554166 1.2:+61151078 MS.gene70814:CDS
AGAGGTTTATCAAGGTGGTG+GGG 0.556530 1.2:+61150988 MS.gene70814:CDS
TAGTGAAATTACCAGCTTGG+AGG 0.560803 1.2:-61152117 None:intergenic
TCAGATCCAGCATGGAGAGT+TGG 0.563903 1.2:+61150369 MS.gene70814:CDS
CTACAAATGATGAGAAGAAG+AGG 0.565637 1.2:+61151152 MS.gene70814:CDS
ACCAAAGTAGTAGAAGAAGA+AGG 0.573800 1.2:-61151604 None:intergenic
ATGGCCAAAAGATGAAGTGT+TGG 0.578682 1.2:+61151705 MS.gene70814:CDS
AAGAGGTTTATCAAGGTGGT+GGG 0.581021 1.2:+61150987 MS.gene70814:CDS
CTTGAATCCTCCTCTACATG+AGG 0.583768 1.2:-61151073 None:intergenic
AAAGAGGTGCAAAGAGAAGT+GGG 0.586402 1.2:+61151849 MS.gene70814:CDS
GAGCTGGAAGAGGTTTATCA+AGG 0.586678 1.2:+61150980 MS.gene70814:CDS
ATATAGTGAAATTACCAGCT+TGG 0.588322 1.2:-61152120 None:intergenic
AGTAGTAGAAGAAGAAGGAA+GGG 0.592188 1.2:-61151599 None:intergenic
GAGTGTGGTGAAGAAAATGA+TGG 0.595280 1.2:+61151222 MS.gene70814:CDS
GTCCAAGGATCAATGAGTTG+AGG 0.597929 1.2:-61150317 None:intergenic
GAAATAGGGTTGTTCTTGCG+AGG 0.598239 1.2:-61151634 None:intergenic
TGTGAAATTCTCTCCCAAAG+TGG 0.599247 1.2:-61151793 None:intergenic
AGCTTGGAAGAAACAAGAGA+TGG 0.599559 1.2:+61151321 MS.gene70814:CDS
TTTGAAGATCAGATCCAGCA+TGG 0.607084 1.2:+61150361 MS.gene70814:CDS
CTTTGGGAGAGAATTTCACA+AGG 0.610777 1.2:+61151796 MS.gene70814:CDS
GATGAAAACCAAGATGGTGC+TGG 0.618902 1.2:+61152069 MS.gene70814:CDS
TCACTTGGGAACATGTCTCA+AGG 0.620742 1.2:+61150402 MS.gene70814:CDS
AACAACAATGAAGAAAAGGA+AGG 0.621045 1.2:+61151751 MS.gene70814:CDS
AGAACTTCATCATTAGTCCA+AGG 0.625382 1.2:-61150332 None:intergenic
AGAAAGCAATAACGTGAATG+TGG 0.625602 1.2:+61152011 MS.gene70814:CDS
CAGGTGAGTCTTCTCAAGTG+GGG 0.628435 1.2:+61152094 MS.gene70814:CDS
TTGAATCCTCCTCTACATGA+GGG 0.632417 1.2:-61151072 None:intergenic
TTGGTTCCCAGATTTCACTT+GGG 0.635745 1.2:+61150388 MS.gene70814:CDS
CAAAACGGACCCTCATGTAG+AGG 0.642223 1.2:+61151063 MS.gene70814:CDS
AACGGACCCTCATGTAGAGG+AGG 0.643254 1.2:+61151066 MS.gene70814:CDS
CACAGGAAGCTAGCTGACGT+TGG 0.645573 1.2:+61150839 MS.gene70814:intron
ACACAAGATGAAAACCAAGA+TGG 0.647031 1.2:+61152063 MS.gene70814:CDS
CTGGAAGAGGTTTATCAAGG+TGG 0.657958 1.2:+61150983 MS.gene70814:CDS
TGAGGCTGAAAAGGCGAACG+AGG 0.666720 1.2:+61151033 MS.gene70814:CDS
TGTTGGCATTGATAAACTTG+AGG 0.669533 1.2:+61151722 MS.gene70814:CDS
GATACAAGAGAAGTGCAAAG+AGG 0.678975 1.2:+61151833 MS.gene70814:CDS
GGAAGGAAATAGCAACAACA+AGG 0.682423 1.2:+61151768 MS.gene70814:CDS
GAATGTGGCTGAAGAAAATG+TGG 0.683811 1.2:+61152026 MS.gene70814:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGCTCATATTATTAATTAT+TGG - chr1.2:61150500-61150519 None:intergenic 15.0%
!!! AATCATAATCAAAATAGTTT+TGG + chr1.2:61150935-61150954 MS.gene70814:CDS 15.0%
!!! TCTATGATTAATTGTTTTTT+TGG + chr1.2:61150796-61150815 MS.gene70814:intron 15.0%
!!! TTTTTGGATTTACATATTTA+CGG + chr1.2:61150812-61150831 MS.gene70814:intron 15.0%
!! TTGTTAATGACTTGATTAAA+TGG - chr1.2:61150472-61150491 None:intergenic 20.0%
!!! ATAGTTTTGGTAAGAATTTT+AGG + chr1.2:61150948-61150967 MS.gene70814:CDS 20.0%
!!! TATTAAAAAAAGTATCCATG+TGG + chr1.2:61150610-61150629 MS.gene70814:intron 20.0%
! ATAAGGCTATATGAAGAAAT+AGG - chr1.2:61151652-61151671 None:intergenic 25.0%
! GAATAACAAAAATCTAGTTG+AGG + chr1.2:61151015-61151034 MS.gene70814:CDS 25.0%
! TAAGGCTATATGAAGAAATA+GGG - chr1.2:61151651-61151670 None:intergenic 25.0%
! TTAAGAAAAGAAGAAATTCG+TGG - chr1.2:61150557-61150576 None:intergenic 25.0%
! TTGAGCAATCTTTATAATCA+AGG + chr1.2:61151958-61151977 MS.gene70814:CDS 25.0%
!! AATTCTGTTCCTTCAATTTT+TGG - chr1.2:61150715-61150734 None:intergenic 25.0%
!! GATAGATTTGAAGTGTTTAA+GGG + chr1.2:61151190-61151209 MS.gene70814:CDS 25.0%
!! TGATAGATTTGAAGTGTTTA+AGG + chr1.2:61151189-61151208 MS.gene70814:CDS 25.0%
AACAACAATGAAGAAAAGGA+AGG + chr1.2:61151751-61151770 MS.gene70814:CDS 30.0%
CAACAACAACAATGAAGAAA+AGG + chr1.2:61151747-61151766 MS.gene70814:CDS 30.0%
CAAGTACTTCAGAAAAACAA+AGG + chr1.2:61151882-61151901 MS.gene70814:CDS 30.0%
GAAAAACAAAGGATGCTAAT+AGG + chr1.2:61151893-61151912 MS.gene70814:CDS 30.0%
GAAATAGGACCAAAAATTGA+AGG + chr1.2:61150703-61150722 MS.gene70814:intron 30.0%
GTCTTTGATCTCTTTCAATT+TGG - chr1.2:61150289-61150308 None:intergenic 30.0%
TGATTAAATGGATGAAGTGA+AGG - chr1.2:61150460-61150479 None:intergenic 30.0%
TTCAAGAATGGATGATGTAT+TGG + chr1.2:61151090-61151109 MS.gene70814:CDS 30.0%
TTGCTCAATAGATGAAAGTA+AGG - chr1.2:61151946-61151965 None:intergenic 30.0%
!!! AGAGTTTTTTCAAGAGTTTC+CGG - chr1.2:61151550-61151569 None:intergenic 30.0%
AAATCTAGTTGAGGCTGAAA+AGG + chr1.2:61151024-61151043 MS.gene70814:CDS 35.0%
AAGTAGTAGAAGAAGAAGGA+AGG - chr1.2:61151603-61151622 None:intergenic 35.0%
ACACAAGATGAAAACCAAGA+TGG + chr1.2:61152063-61152082 MS.gene70814:CDS 35.0%
ACCAAAGTAGTAGAAGAAGA+AGG - chr1.2:61151607-61151626 None:intergenic 35.0%
AGAAAGCAATAACGTGAATG+TGG + chr1.2:61152011-61152030 MS.gene70814:CDS 35.0%
AGAACTTCATCATTAGTCCA+AGG - chr1.2:61150335-61150354 None:intergenic 35.0%
AGTAGTAGAAGAAGAAGGAA+GGG - chr1.2:61151602-61151621 None:intergenic 35.0%
AGTTTAGTAGAGAAGAAGCT+TGG + chr1.2:61151305-61151324 MS.gene70814:CDS 35.0%
CAAAGGATGCTAATAGGAAA+AGG + chr1.2:61151899-61151918 MS.gene70814:CDS 35.0%
CTACAAATGATGAGAAGAAG+AGG + chr1.2:61151152-61151171 MS.gene70814:CDS 35.0%
GAGAATTTCACAAGGAATGT+TGG + chr1.2:61151804-61151823 MS.gene70814:CDS 35.0%
GTCAAAGAAAAGTGAAGAAG+AGG + chr1.2:61151114-61151133 MS.gene70814:CDS 35.0%
TCCTTCTTCTTCTACTACTT+TGG + chr1.2:61151603-61151622 MS.gene70814:CDS 35.0%
TGAAGATGACATTGAAGCTA+AGG - chr1.2:61151461-61151480 None:intergenic 35.0%
TTCTTCTTCTACTACTTTGG+TGG + chr1.2:61151606-61151625 MS.gene70814:CDS 35.0%
TTTCAAGAGTTTCCGGATTA+GGG - chr1.2:61151543-61151562 None:intergenic 35.0%
! AATGCCAACACTTCATCTTT+TGG - chr1.2:61151712-61151731 None:intergenic 35.0%
!! TGTTGGCATTGATAAACTTG+AGG + chr1.2:61151722-61151741 MS.gene70814:CDS 35.0%
!! TTTTCAAGAGTTTCCGGATT+AGG - chr1.2:61151544-61151563 None:intergenic 35.0%
!!! TTTTAGGTTTGTTACTGAGC+TGG + chr1.2:61150964-61150983 MS.gene70814:CDS 35.0%
AAGAGGTTTATCAAGGTGGT+GGG + chr1.2:61150987-61151006 MS.gene70814:CDS 40.0%
ACATGTTCCCAAGTGAAATC+TGG - chr1.2:61150398-61150417 None:intergenic 40.0%
AGCTTGGAAGAAACAAGAGA+TGG + chr1.2:61151321-61151340 MS.gene70814:CDS 40.0%
ATGGCCAAAAGATGAAGTGT+TGG + chr1.2:61151705-61151724 MS.gene70814:CDS 40.0%
CATGTTCCCAAGTGAAATCT+GGG - chr1.2:61150397-61150416 None:intergenic 40.0%
GAAGAAGAGGTAGTTGAGAA+AGG + chr1.2:61151127-61151146 MS.gene70814:CDS 40.0%
GAATGTGGCTGAAGAAAATG+TGG + chr1.2:61152026-61152045 MS.gene70814:CDS 40.0%
GAGAAGAAGAGGAAAAGATC+AGG + chr1.2:61151163-61151182 MS.gene70814:CDS 40.0%
GAGACGATATTGGTAGAAGA+TGG + chr1.2:61151686-61151705 MS.gene70814:CDS 40.0%
GAGTGTGGTGAAGAAAATGA+TGG + chr1.2:61151222-61151241 MS.gene70814:CDS 40.0%
GGAAGGAAATAGCAACAACA+AGG + chr1.2:61151768-61151787 MS.gene70814:CDS 40.0%
GTGTTTGTGAGCTGAATTGA+AGG - chr1.2:61150656-61150675 None:intergenic 40.0%
TACATATTTACGGTGTGCAC+AGG + chr1.2:61150822-61150841 MS.gene70814:intron 40.0%
TCACAAGGAATGTTGGAGTT+AGG + chr1.2:61151811-61151830 MS.gene70814:CDS 40.0%
TGTAGAGGAGGATTCAAGAA+TGG + chr1.2:61151078-61151097 MS.gene70814:CDS 40.0%
TGTGAAATTCTCTCCCAAAG+TGG - chr1.2:61151796-61151815 None:intergenic 40.0%
TTCCTCAACTCATTGATCCT+TGG + chr1.2:61150315-61150334 MS.gene70814:CDS 40.0%
TTGAATCCTCCTCTACATGA+GGG - chr1.2:61151075-61151094 None:intergenic 40.0%
TTGGTTCCCAGATTTCACTT+GGG + chr1.2:61150388-61150407 MS.gene70814:CDS 40.0%
TTTGAAGATCAGATCCAGCA+TGG + chr1.2:61150361-61150380 MS.gene70814:CDS 40.0%
! AAAGAGGTGCAAAGAGAAGT+GGG + chr1.2:61151849-61151868 MS.gene70814:CDS 40.0%
! ACGTAGTGCTGAAAAATGCA+AGG + chr1.2:61150868-61150887 MS.gene70814:CDS 40.0%
! CTTTGGGAGAGAATTTCACA+AGG + chr1.2:61151796-61151815 MS.gene70814:CDS 40.0%
! GATACAAGAGAAGTGCAAAG+AGG + chr1.2:61151833-61151852 MS.gene70814:CDS 40.0%
! TAAGGGTTTTTGTGAGAGTG+TGG + chr1.2:61151207-61151226 MS.gene70814:CDS 40.0%
!! GAACAAAGAGCTTGAGTTGA+TGG + chr1.2:61151351-61151370 MS.gene70814:CDS 40.0%
!! TTTTGGTCCTATTTCTCTCG+AGG - chr1.2:61150698-61150717 None:intergenic 40.0%
AAGAAGGAAGGGTTGAGCTA+GGG - chr1.2:61151591-61151610 None:intergenic 45.0%
ACACACACCTCGAGAGAAAT+AGG + chr1.2:61150688-61150707 MS.gene70814:intron 45.0%
AGAGGTTTATCAAGGTGGTG+GGG + chr1.2:61150988-61151007 MS.gene70814:CDS 45.0%
CTGGAAGAGGTTTATCAAGG+TGG + chr1.2:61150983-61151002 MS.gene70814:CDS 45.0%
CTTGAATCCTCCTCTACATG+AGG - chr1.2:61151076-61151095 None:intergenic 45.0%
GAAATAGGGTTGTTCTTGCG+AGG - chr1.2:61151637-61151656 None:intergenic 45.0%
GAACGAGGTGCAAGACAAAA+CGG + chr1.2:61151048-61151067 MS.gene70814:CDS 45.0%
GAAGAGGTTTATCAAGGTGG+TGG + chr1.2:61150986-61151005 MS.gene70814:CDS 45.0%
GAGCTAGGGTTTACAGGTAT+TGG - chr1.2:61151577-61151596 None:intergenic 45.0%
GAGCTGGAAGAGGTTTATCA+AGG + chr1.2:61150980-61150999 MS.gene70814:CDS 45.0%
GATGAAAACCAAGATGGTGC+TGG + chr1.2:61152069-61152088 MS.gene70814:CDS 45.0%
GCACATGAACAAGCTATTGC+TGG + chr1.2:61151373-61151392 MS.gene70814:CDS 45.0%
GCACTCACAAAACCCTAATC+CGG + chr1.2:61151528-61151547 MS.gene70814:CDS 45.0%
GTCCAAGGATCAATGAGTTG+AGG - chr1.2:61150320-61150339 None:intergenic 45.0%
GTGTGTCTTTGTCTACCACA+TGG - chr1.2:61150628-61150647 None:intergenic 45.0%
TCACTTGGGAACATGTCTCA+AGG + chr1.2:61150402-61150421 MS.gene70814:CDS 45.0%
! CAAAGAGGTGCAAAGAGAAG+TGG + chr1.2:61151848-61151867 MS.gene70814:CDS 45.0%
! CAACAACAAGGCACCACTTT+GGG + chr1.2:61151780-61151799 MS.gene70814:CDS 45.0%
! GTTGGTTCCCAGATTTCACT+TGG + chr1.2:61150387-61150406 MS.gene70814:CDS 45.0%
! GTTTGTTACTGAGCTGGAAG+AGG + chr1.2:61150970-61150989 MS.gene70814:CDS 45.0%
AGCAGCGAGAGAGACGATAT+TGG + chr1.2:61151676-61151695 MS.gene70814:CDS 50.0%
AGGGTTGAGCTAGGGTTTAC+AGG - chr1.2:61151583-61151602 None:intergenic 50.0%
CAAAACGGACCCTCATGTAG+AGG + chr1.2:61151063-61151082 MS.gene70814:CDS 50.0%
CAGGTGAGTCTTCTCAAGTG+GGG + chr1.2:61152094-61152113 MS.gene70814:CDS 50.0%
CTCTCTCGCTGCTCGATATA+AGG - chr1.2:61151669-61151688 None:intergenic 50.0%
GAAGAAGGAAGGGTTGAGCT+AGG - chr1.2:61151592-61151611 None:intergenic 50.0%
GCAGGTGAGTCTTCTCAAGT+GGG + chr1.2:61152093-61152112 MS.gene70814:CDS 50.0%
TCAGATCCAGCATGGAGAGT+TGG + chr1.2:61150369-61150388 MS.gene70814:CDS 50.0%
TGCAGGTGAGTCTTCTCAAG+TGG + chr1.2:61152092-61152111 MS.gene70814:CDS 50.0%
! GAGGTTTATCAAGGTGGTGG+GGG + chr1.2:61150989-61151008 MS.gene70814:CDS 50.0%
! GCAACAACAAGGCACCACTT+TGG + chr1.2:61151779-61151798 MS.gene70814:CDS 50.0%
AACGGACCCTCATGTAGAGG+AGG + chr1.2:61151066-61151085 MS.gene70814:CDS 55.0%
CACAGGAAGCTAGCTGACGT+TGG + chr1.2:61150839-61150858 MS.gene70814:intron 55.0%
TGAGGCTGAAAAGGCGAACG+AGG + chr1.2:61151033-61151052 MS.gene70814:CDS 55.0%
TGGGAACCAACTCTCCATGC+TGG - chr1.2:61150378-61150397 None:intergenic 55.0%
!! AACCAAGATGGTGCTGGTGC+AGG + chr1.2:61152075-61152094 MS.gene70814:CDS 55.0%
CACCTGCACCAGCACCATCT+TGG - chr1.2:61152080-61152099 None:intergenic 60.0%
CTCTCGAGGTGTGTGTCTCG+TGG - chr1.2:61150684-61150703 None:intergenic 60.0%
CTCAAGTGGGGCCTCCAAGC+TGG + chr1.2:61152106-61152125 MS.gene70814:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 61150275 61152131 61150275 ID=MS.gene70814
chr1.2 mRNA 61150275 61152131 61150275 ID=MS.gene70814.t1;Parent=MS.gene70814
chr1.2 exon 61150275 61150423 61150275 ID=MS.gene70814.t1.exon1;Parent=MS.gene70814.t1
chr1.2 CDS 61150275 61150423 61150275 ID=cds.MS.gene70814.t1;Parent=MS.gene70814.t1
chr1.2 exon 61150844 61152131 61150844 ID=MS.gene70814.t1.exon2;Parent=MS.gene70814.t1
chr1.2 CDS 61150844 61152131 61150844 ID=cds.MS.gene70814.t1;Parent=MS.gene70814.t1
Gene Sequence

>MS.gene70814

ATGAGCAACTTCCAAATTGAAAGAGATCAAAGACAAATACTTCCTCAACTCATTGATCCTTGGACTAATGATGAAGTTCTTGCACTTTTGAAGATCAGATCCAGCATGGAGAGTTGGTTCCCAGATTTCACTTGGGAACATGTCTCAAGGTATACAAATATATCATTGTAATTCTAACATCTCCTTCACTTCATCCATTTAATCAAGTCATTAACAATCATACCAATAATTAATAATATGAGCTAGATATTTATAAATCTTAACTAATGTATATTCTTTCCACGAATTTCTTCTTTTCTTAATACTACTAGTTTTATTAACATTTGCGTGAGTATTATTAAAAAAAGTATCCATGTGGTAGACAAAGACACACGTGCACCTTCAATTCAGCTCACAAACACTGACACCACGAGACACACACCTCGAGAGAAATAGGACCAAAAATTGAAGGAACAGAATTTGTCTATTATTACTATGTATTGAATACGCTTGTGTGTTAGAGTAATTCAATGCTTTTTAATTCTATGATTAATTGTTTTTTTGGATTTACATATTTACGGTGTGCACAGGAAGCTAGCTGACGTTGGTTATAAACGTAGTGCTGAAAAATGCAAGGAAAAATTTGAAGAAGAAAGCAGATTCTTCAACAACATTAATAATAATCATAATCAAAATAGTTTTGGTAAGAATTTTAGGTTTGTTACTGAGCTGGAAGAGGTTTATCAAGGTGGTGGGGGTGAGAATAACAAAAATCTAGTTGAGGCTGAAAAGGCGAACGAGGTGCAAGACAAAACGGACCCTCATGTAGAGGAGGATTCAAGAATGGATGATGTATTGGTGTCAAAGAAAAGTGAAGAAGAGGTAGTTGAGAAAGGTACTACAAATGATGAGAAGAAGAGGAAAAGATCAGGTGATGATAGATTTGAAGTGTTTAAGGGTTTTTGTGAGAGTGTGGTGAAGAAAATGATGGATCAACAAGAAGAAATGCACAACAAGCTTATTGAAGATATGATTAAAAGAGATGAAGAGAAGTTTAGTAGAGAAGAAGCTTGGAAGAAACAAGAGATGGAGAAAATGAACAAAGAGCTTGAGTTGATGGCACATGAACAAGCTATTGCTGGTGATAGACAATCACATATAATTCAATTCTTGAACAAATTCTCAACAAGTGCTAATTCTTCTTCCTTAGCTTCAATGTCATCTTCACTTCAAGCTTATTTAGCAACATTAACTTCAAACTCTTCTTCTACATTGCACTCACAAAACCCTAATCCGGAAACTCTTGAAAAAACTCTTCAACCAATACCTGTAAACCCTAGCTCAACCCTTCCTTCTTCTTCTACTACTTTGGTGGCTCAGCCTCGCAAGAACAACCCTATTTCTTCATATAGCCTTATATCGAGCAGCGAGAGAGACGATATTGGTAGAAGATGGCCAAAAGATGAAGTGTTGGCATTGATAAACTTGAGGTGCAACAACAACAATGAAGAAAAGGAAGGAAATAGCAACAACAAGGCACCACTTTGGGAGAGAATTTCACAAGGAATGTTGGAGTTAGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAATATAAACAAGTACTTCAGAAAAACAAAGGATGCTAATAGGAAAAGGTCACTTGATTCAAGAACTTGTCCTTACTTTCATCTATTGAGCAATCTTTATAATCAAGGTAAGCTTGTTCTTCAATCTGATCAAAAGCAAGAAAGCAATAACGTGAATGTGGCTGAAGAAAATGTGGTTCAAGAGAAAGCAACACAAGATGAAAACCAAGATGGTGCTGGTGCAGGTGAGTCTTCTCAAGTGGGGCCTCCAAGCTGGTAA
Protein sequence

>MS.gene70814.t1

MSNFQIERDQRQILPQLIDPWTNDEVLALLKIRSSMESWFPDFTWEHVSRKLADVGYKRSAEKCKEKFEEESRFFNNINNNHNQNSFGKNFRFVTELEEVYQGGGGENNKNLVEAEKANEVQDKTDPHVEEDSRMDDVLVSKKSEEEVVEKGTTNDEKKRKRSGDDRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMIKRDEEKFSREEAWKKQEMEKMNKELELMAHEQAIAGDRQSHIIQFLNKFSTSANSSSLASMSSSLQAYLATLTSNSSSTLHSQNPNPETLEKTLQPIPVNPSSTLPSSSTTLVAQPRKNNPISSYSLISSSERDDIGRRWPKDEVLALINLRCNNNNEEKEGNSNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKRSLDSRTCPYFHLLSNLYNQGKLVLQSDQKQESNNVNVAEENVVQEKATQDENQDGAGAGESSQVGPPSW