Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70817.t1 | XP_013468989.1 | 96.7 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 1.10E-102 | 382.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70817.t1 | A0A072VN18 | 96.7 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 7.7e-103 | 382.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050961 | MS.gene70817 | 0.828307 | 9.67E-55 | -1.69E-46 |
| MS.gene052533 | MS.gene70817 | 0.8071 | 5.96E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70817.t1 | MTR_1g080990 | 96.685 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 4.87e-130 | 365 |
| MS.gene70817.t1 | MTR_1g080990 | 98.065 | 155 | 3 | 0 | 1 | 155 | 1 | 155 | 3.29e-112 | 318 |
| MS.gene70817.t1 | MTR_1g080990 | 72.928 | 181 | 7 | 1 | 1 | 181 | 1 | 139 | 2.33e-85 | 250 |
| MS.gene70817.t1 | MTR_7g114890 | 50.270 | 185 | 81 | 4 | 1 | 174 | 1 | 185 | 8.85e-56 | 177 |
| MS.gene70817.t1 | MTR_7g114890 | 50.270 | 185 | 81 | 4 | 1 | 174 | 1 | 185 | 9.95e-56 | 177 |
| MS.gene70817.t1 | MTR_1g041410 | 49.057 | 159 | 76 | 2 | 12 | 166 | 10 | 167 | 5.48e-50 | 162 |
| MS.gene70817.t1 | MTR_7g114890 | 48.503 | 167 | 75 | 4 | 1 | 156 | 1 | 167 | 6.09e-46 | 150 |
| MS.gene70817.t1 | MTR_7g114880 | 40.909 | 88 | 47 | 3 | 1 | 85 | 1 | 86 | 3.05e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70817.t1 | AT4G14746 | 37.423 | 163 | 90 | 3 | 10 | 166 | 10 | 166 | 7.93e-32 | 115 |
| MS.gene70817.t1 | AT4G14746 | 33.645 | 107 | 60 | 3 | 10 | 111 | 10 | 110 | 1.24e-12 | 64.3 |
Find 60 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGAAGATTATAATAAT+TGG | 0.152675 | 1.2:-61190901 | None:intergenic |
| TTTGTTTGTGAATGCGATTC+TGG | 0.220907 | 1.2:+61190100 | MS.gene70817:CDS |
| TTCTGATGATGTGTCTAATT+TGG | 0.220919 | 1.2:+61191349 | MS.gene70817:CDS |
| GTGTGTATGTGTCTTGTTCT+TGG | 0.257626 | 1.2:-61190862 | None:intergenic |
| TTGAGAAGATTATAATAATT+GGG | 0.290960 | 1.2:-61190900 | None:intergenic |
| TCCCCAGCAAGCTCAATCTT+TGG | 0.317543 | 1.2:+61191375 | MS.gene70817:CDS |
| CCTCCAAAGATTGAGCTTGC+TGG | 0.322376 | 1.2:-61191378 | None:intergenic |
| TGAAACTTTAATTCCAAGTC+TGG | 0.344971 | 1.2:-61191090 | None:intergenic |
| ATGGGTTCTTTCAAGTTGTT+GGG | 0.370656 | 1.2:+61189741 | MS.gene70817:CDS |
| CTTGTAGGTAGCTTGAATTA+TGG | 0.388414 | 1.2:+61190340 | MS.gene70817:intron |
| AATGGGTTCTTTCAAGTTGT+TGG | 0.394087 | 1.2:+61189740 | None:intergenic |
| CTCCAAAGATTGAGCTTGCT+GGG | 0.403250 | 1.2:-61191377 | None:intergenic |
| ATATATCATCATCTTCATCT+TGG | 0.410673 | 1.2:-61190135 | None:intergenic |
| ATTAAAGTTTCAAATTCAAC+CGG | 0.417259 | 1.2:+61191101 | MS.gene70817:CDS |
| TATATCATCATCTTCATCTT+GGG | 0.418577 | 1.2:-61190134 | None:intergenic |
| TTGCGAGGTAAAGTCTTCTC+TGG | 0.418920 | 1.2:-61190388 | None:intergenic |
| TCTGGAACTGGAGGAGGTGC+TGG | 0.422912 | 1.2:-61190370 | None:intergenic |
| GGATCTGATTGTTCCAGACT+TGG | 0.423037 | 1.2:+61191077 | MS.gene70817:CDS |
| AAAATCCCCTTTGGCAGCCA+TGG | 0.429161 | 1.2:-61189796 | None:intergenic |
| GGTAAAGTCTTCTCTGGAAC+TGG | 0.430461 | 1.2:-61190382 | None:intergenic |
| ACTGTGTTGTTGATTTCAAC+GGG | 0.460186 | 1.2:+61191417 | MS.gene70817:CDS |
| TACTTCCCATGGCTGCCAAA+GGG | 0.472045 | 1.2:+61189790 | MS.gene70817:CDS |
| GTCTTCTCTGGAACTGGAGG+AGG | 0.479737 | 1.2:-61190376 | None:intergenic |
| CACTGTGTTGTTGATTTCAA+CGG | 0.481718 | 1.2:+61191416 | MS.gene70817:CDS |
| TCTTTGGAGGAAGGTTCCAT+TGG | 0.490994 | 1.2:+61191391 | MS.gene70817:CDS |
| TTTCAACGGGTATGGTTATG+TGG | 0.491371 | 1.2:+61191430 | MS.gene70817:CDS |
| GTTGTTGATTTCAACGGGTA+TGG | 0.491561 | 1.2:+61191422 | MS.gene70817:CDS |
| CCAGCAAGCTCAATCTTTGG+AGG | 0.494478 | 1.2:+61191378 | MS.gene70817:CDS |
| ATCATCAACAAAATCCCCTT+TGG | 0.497557 | 1.2:-61189805 | None:intergenic |
| ATGGTTATGTGGAGCTAGCT+AGG | 0.499858 | 1.2:+61191441 | MS.gene70817:CDS |
| GTTGTTGGGTCTTATAGCCA+TGG | 0.505786 | 1.2:+61189755 | MS.gene70817:CDS |
| AGCTAGCTAGGATGCATAGA+TGG | 0.514556 | 1.2:+61191453 | MS.gene70817:CDS |
| TGAGAAGATTATAATAATTG+GGG | 0.515021 | 1.2:-61190899 | None:intergenic |
| ATTCACAAACAAAGTTCAAA+GGG | 0.522384 | 1.2:-61190090 | None:intergenic |
| TTTGTGAATGCGATTCTGGC+TGG | 0.522677 | 1.2:+61190104 | MS.gene70817:CDS |
| ACCATGACTCTCAACATCTC+CGG | 0.532665 | 1.2:-61191120 | None:intergenic |
| CATTCACAAACAAAGTTCAA+AGG | 0.535528 | 1.2:-61190091 | None:intergenic |
| CTACTTCCCATGGCTGCCAA+AGG | 0.546322 | 1.2:+61189789 | MS.gene70817:CDS |
| TCTCATGTTACTACTTCCCA+TGG | 0.547836 | 1.2:+61189779 | MS.gene70817:CDS |
| TATTGGGCATATTGTGGAGA+AGG | 0.548373 | 1.2:+61190831 | MS.gene70817:CDS |
| CAAGCTCAATCTTTGGAGGA+AGG | 0.555181 | 1.2:+61191382 | MS.gene70817:CDS |
| AGAAAAGGTTTGTGAAGAAG+TGG | 0.556344 | 1.2:+61190030 | MS.gene70817:intron |
| AAATCCCCTTTGGCAGCCAT+GGG | 0.560106 | 1.2:-61189795 | None:intergenic |
| TCAACAACACAGTGATCCAA+TGG | 0.563270 | 1.2:-61191407 | None:intergenic |
| GCTTGCTATTGGGCATATTG+TGG | 0.565530 | 1.2:+61190825 | MS.gene70817:intron |
| ACCGGAGATGTTGAGAGTCA+TGG | 0.572906 | 1.2:+61191119 | MS.gene70817:CDS |
| GAACTGGAGGAGGTGCTGGT+TGG | 0.589415 | 1.2:-61190366 | None:intergenic |
| GAAGAAGTGGAGTGTGGGAA+AGG | 0.596466 | 1.2:+61190043 | MS.gene70817:CDS |
| GCTTACATTCACTGTAACAA+GGG | 0.603257 | 1.2:-61190935 | None:intergenic |
| TCCAAAGATTGAGCTTGCTG+GGG | 0.605382 | 1.2:-61191376 | None:intergenic |
| TGCTTACATTCACTGTAACA+AGG | 0.610685 | 1.2:-61190936 | None:intergenic |
| ACTTCCCATGGCTGCCAAAG+GGG | 0.616013 | 1.2:+61189791 | MS.gene70817:CDS |
| AAAGTCTTCTCTGGAACTGG+AGG | 0.629011 | 1.2:-61190379 | None:intergenic |
| GTTTGTGAAGAAGTGGAGTG+TGG | 0.633621 | 1.2:+61190037 | MS.gene70817:CDS |
| TTTGTGAAGAAGTGGAGTGT+GGG | 0.637331 | 1.2:+61190038 | MS.gene70817:CDS |
| TTACATTGAGGAATGACACA+TGG | 0.645633 | 1.2:-61190175 | None:intergenic |
| GTTACACTTACGATCAAAAG+CGG | 0.661338 | 1.2:-61190416 | None:intergenic |
| AAGTAGTAACATGAGAACCA+TGG | 0.695164 | 1.2:-61189772 | None:intergenic |
| TCAAAAGCGGAAATATTGCG+AGG | 0.697244 | 1.2:-61190403 | None:intergenic |
| GTGTGGGAAAGGAAACTGTG+TGG | 0.765418 | 1.2:+61190054 | MS.gene70817:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTTAATTTTTTTTATGA+AGG | + | chr1.2:61190271-61190290 | MS.gene70817:intron | 10.0% |
| !! | ATTGAGAAGATTATAATAAT+TGG | - | chr1.2:61190904-61190923 | None:intergenic | 15.0% |
| !! | CAAAATAACTGAATAAATAA+AGG | - | chr1.2:61190970-61190989 | None:intergenic | 15.0% |
| !! | TATATATGCATTAGATATAT+AGG | - | chr1.2:61189875-61189894 | None:intergenic | 15.0% |
| !! | TTGAGAAGATTATAATAATT+GGG | - | chr1.2:61190903-61190922 | None:intergenic | 15.0% |
| !!! | AAAGGTTCATAATTTTTTTT+TGG | + | chr1.2:61190656-61190675 | MS.gene70817:intron | 15.0% |
| !! | AACCATATTATCAATTCAAA+AGG | + | chr1.2:61190638-61190657 | MS.gene70817:intron | 20.0% |
| !! | ACTGAATAAATAAAGGTTTA+AGG | - | chr1.2:61190963-61190982 | None:intergenic | 20.0% |
| !! | ATATCTAATGCATATATACA+TGG | + | chr1.2:61189877-61189896 | MS.gene70817:intron | 20.0% |
| !! | ATCCATATATATATATGTCA+CGG | - | chr1.2:61189999-61190018 | None:intergenic | 20.0% |
| !! | ATTAAAGTTTCAAATTCAAC+CGG | + | chr1.2:61191101-61191120 | MS.gene70817:CDS | 20.0% |
| !! | TATTCTATCATTTATCTTGT+AGG | + | chr1.2:61190325-61190344 | MS.gene70817:intron | 20.0% |
| !! | TGAGAAGATTATAATAATTG+GGG | - | chr1.2:61190902-61190921 | None:intergenic | 20.0% |
| !! | TTCATATTATATGCACAAAA+AGG | + | chr1.2:61190687-61190706 | MS.gene70817:intron | 20.0% |
| !!! | AAATTTTGCTAGTTTTCTTA+TGG | + | chr1.2:61191277-61191296 | MS.gene70817:intron | 20.0% |
| !!! | AACCTTTTGAATTGATAATA+TGG | - | chr1.2:61190643-61190662 | None:intergenic | 20.0% |
| !!! | GGTTCAAGATTTTTAAATTT+AGG | + | chr1.2:61191245-61191264 | MS.gene70817:intron | 20.0% |
| !!! | TTATTCAGTTATTTTGACAA+TGG | + | chr1.2:61190974-61190993 | MS.gene70817:intron | 20.0% |
| ! | AACCGTGACATATATATATA+TGG | + | chr1.2:61189994-61190013 | MS.gene70817:intron | 25.0% |
| ! | AATTGAAGTTCATTAACACT+AGG | + | chr1.2:61190547-61190566 | MS.gene70817:intron | 25.0% |
| ! | AGAGATTGAAATTTACATTG+AGG | - | chr1.2:61190190-61190209 | None:intergenic | 25.0% |
| ! | ATATATCATCATCTTCATCT+TGG | - | chr1.2:61190138-61190157 | None:intergenic | 25.0% |
| ! | ATTCACAAACAAAGTTCAAA+GGG | - | chr1.2:61190093-61190112 | None:intergenic | 25.0% |
| ! | ATTGAAGTTCATTAACACTA+GGG | + | chr1.2:61190548-61190567 | MS.gene70817:intron | 25.0% |
| ! | CAAGATAAATGATAGAATAG+AGG | - | chr1.2:61190324-61190343 | None:intergenic | 25.0% |
| ! | CAAGTAAATAAGAGTTAGTA+AGG | - | chr1.2:61190219-61190238 | None:intergenic | 25.0% |
| ! | GGATATATTAATTGCAGAAA+AGG | + | chr1.2:61190015-61190034 | MS.gene70817:intron | 25.0% |
| ! | TATATCATCATCTTCATCTT+GGG | - | chr1.2:61190137-61190156 | None:intergenic | 25.0% |
| !!! | AAGAGTACCTTCAAAATTTA+AGG | - | chr1.2:61191057-61191076 | None:intergenic | 25.0% |
| !!! | AATATGGTTCAGTTTTTTTG+TGG | - | chr1.2:61190627-61190646 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTAGCTTGCTAT+TGG | + | chr1.2:61190814-61190833 | MS.gene70817:intron | 25.0% |
| !!! | TATTTTTGTAGCTTGCTATT+GGG | + | chr1.2:61190815-61190834 | MS.gene70817:intron | 25.0% |
| !!! | TTAAATTTTGAAGGTACTCT+TGG | + | chr1.2:61191056-61191075 | MS.gene70817:intron | 25.0% |
| AAAAATGAGTTTACGTACCA+AGG | - | chr1.2:61189833-61189852 | None:intergenic | 30.0% | |
| AACACAGAAATTGTTACCAA+CGG | + | chr1.2:61191214-61191233 | MS.gene70817:intron | 30.0% | |
| ACAAAAAGGTTTCATGAGTT+TGG | + | chr1.2:61190701-61190720 | MS.gene70817:intron | 30.0% | |
| AGAAGAATATTGACCAAACA+TGG | + | chr1.2:61191014-61191033 | MS.gene70817:intron | 30.0% | |
| AGTAAAGTCTTGCTAAAATC+AGG | + | chr1.2:61190490-61190509 | MS.gene70817:intron | 30.0% | |
| CATTCACAAACAAAGTTCAA+AGG | - | chr1.2:61190094-61190113 | None:intergenic | 30.0% | |
| CCAAGATATTAATCCATGTT+TGG | - | chr1.2:61191030-61191049 | None:intergenic | 30.0% | |
| GTAAATAAGAGTTAGTAAGG+AGG | - | chr1.2:61190216-61190235 | None:intergenic | 30.0% | |
| TGAAACTTTAATTCCAAGTC+TGG | - | chr1.2:61191093-61191112 | None:intergenic | 30.0% | |
| TGATAGAATAGAGGAGATTT+AGG | - | chr1.2:61190315-61190334 | None:intergenic | 30.0% | |
| TGGTAACAATTTCTGTGTTA+GGG | - | chr1.2:61191213-61191232 | None:intergenic | 30.0% | |
| TTGAAGTTCATTAACACTAG+GGG | + | chr1.2:61190549-61190568 | MS.gene70817:intron | 30.0% | |
| ! | AACATGGATTAATATCTTGG+TGG | + | chr1.2:61191030-61191049 | MS.gene70817:intron | 30.0% |
| ! | CCAAACATGGATTAATATCT+TGG | + | chr1.2:61191027-61191046 | MS.gene70817:intron | 30.0% |
| ! | TTCTGATGATGTGTCTAATT+TGG | + | chr1.2:61191349-61191368 | MS.gene70817:CDS | 30.0% |
| ! | TTGGTAACAATTTCTGTGTT+AGG | - | chr1.2:61191214-61191233 | None:intergenic | 30.0% |
| !! | ACTTAACTCTTTGTTGACTT+TGG | + | chr1.2:61190442-61190461 | MS.gene70817:intron | 30.0% |
| AAGTAGTAACATGAGAACCA+TGG | - | chr1.2:61189775-61189794 | None:intergenic | 35.0% | |
| AGAAAAGGTTTGTGAAGAAG+TGG | + | chr1.2:61190030-61190049 | MS.gene70817:intron | 35.0% | |
| ATCATCAACAAAATCCCCTT+TGG | - | chr1.2:61189808-61189827 | None:intergenic | 35.0% | |
| ATCCATAAACTGAACCAAAC+TGG | + | chr1.2:61190600-61190619 | MS.gene70817:intron | 35.0% | |
| CTTGTAGGTAGCTTGAATTA+TGG | + | chr1.2:61190340-61190359 | MS.gene70817:intron | 35.0% | |
| GCTTACATTCACTGTAACAA+GGG | - | chr1.2:61190938-61190957 | None:intergenic | 35.0% | |
| GTTACACTTACGATCAAAAG+CGG | - | chr1.2:61190419-61190438 | None:intergenic | 35.0% | |
| TGCTTACATTCACTGTAACA+AGG | - | chr1.2:61190939-61190958 | None:intergenic | 35.0% | |
| TTACATTGAGGAATGACACA+TGG | - | chr1.2:61190178-61190197 | None:intergenic | 35.0% | |
| TTTGTTTGTGAATGCGATTC+TGG | + | chr1.2:61190100-61190119 | MS.gene70817:CDS | 35.0% | |
| !! | ACTGTGTTGTTGATTTCAAC+GGG | + | chr1.2:61191417-61191436 | MS.gene70817:CDS | 35.0% |
| !! | ATGGGTTCTTTCAAGTTGTT+GGG | + | chr1.2:61189741-61189760 | MS.gene70817:CDS | 35.0% |
| !! | CACTGTGTTGTTGATTTCAA+CGG | + | chr1.2:61191416-61191435 | MS.gene70817:CDS | 35.0% |
| !! | TGGTGGACCTTAAATTTTGA+AGG | + | chr1.2:61191047-61191066 | MS.gene70817:intron | 35.0% |
| !!! | AGTTTTTTTGTGGTCCAGTT+TGG | - | chr1.2:61190617-61190636 | None:intergenic | 35.0% |
| !!! | GATTTTGTTGATGATGTCCT+TGG | + | chr1.2:61189813-61189832 | MS.gene70817:CDS | 35.0% |
| TATTGGGCATATTGTGGAGA+AGG | + | chr1.2:61190831-61190850 | MS.gene70817:CDS | 40.0% | |
| TCAAAAGCGGAAATATTGCG+AGG | - | chr1.2:61190406-61190425 | None:intergenic | 40.0% | |
| TCAACAACACAGTGATCCAA+TGG | - | chr1.2:61191410-61191429 | None:intergenic | 40.0% | |
| TCTCATGTTACTACTTCCCA+TGG | + | chr1.2:61189779-61189798 | MS.gene70817:CDS | 40.0% | |
| TTTCAACGGGTATGGTTATG+TGG | + | chr1.2:61191430-61191449 | MS.gene70817:CDS | 40.0% | |
| TTTGTGAAGAAGTGGAGTGT+GGG | + | chr1.2:61190038-61190057 | MS.gene70817:CDS | 40.0% | |
| ! | GTCCAGTTTGGTTCAGTTTA+TGG | - | chr1.2:61190605-61190624 | None:intergenic | 40.0% |
| ! | GTGTGTATGTGTCTTGTTCT+TGG | - | chr1.2:61190865-61190884 | None:intergenic | 40.0% |
| !! | GTTGTTGATTTCAACGGGTA+TGG | + | chr1.2:61191422-61191441 | MS.gene70817:CDS | 40.0% |
| !! | TTGTTACCAACGGACTAATG+AGG | + | chr1.2:61191224-61191243 | MS.gene70817:intron | 40.0% |
| ACCATGACTCTCAACATCTC+CGG | - | chr1.2:61191123-61191142 | None:intergenic | 45.0% | |
| AGCTAGCTAGGATGCATAGA+TGG | + | chr1.2:61191453-61191472 | MS.gene70817:CDS | 45.0% | |
| ATGGTTATGTGGAGCTAGCT+AGG | + | chr1.2:61191441-61191460 | MS.gene70817:CDS | 45.0% | |
| CTTGAACCTCATTAGTCCGT+TGG | - | chr1.2:61191233-61191252 | None:intergenic | 45.0% | |
| GGATCTGATTGTTCCAGACT+TGG | + | chr1.2:61191077-61191096 | MS.gene70817:CDS | 45.0% | |
| GTTTGTGAAGAAGTGGAGTG+TGG | + | chr1.2:61190037-61190056 | MS.gene70817:CDS | 45.0% | |
| TTGCGAGGTAAAGTCTTCTC+TGG | - | chr1.2:61190391-61190410 | None:intergenic | 45.0% | |
| TTTGTGAATGCGATTCTGGC+TGG | + | chr1.2:61190104-61190123 | MS.gene70817:CDS | 45.0% | |
| ! | ACTAGGGGTGTGCAAAAATG+TGG | + | chr1.2:61190564-61190583 | MS.gene70817:intron | 45.0% |
| ! | CAAGCTCAATCTTTGGAGGA+AGG | + | chr1.2:61191382-61191401 | MS.gene70817:CDS | 45.0% |
| ! | CTCCAAAGATTGAGCTTGCT+GGG | - | chr1.2:61191380-61191399 | None:intergenic | 45.0% |
| ! | GTTGTTGGGTCTTATAGCCA+TGG | + | chr1.2:61189755-61189774 | MS.gene70817:CDS | 45.0% |
| ! | TCTTTGGAGGAAGGTTCCAT+TGG | + | chr1.2:61191391-61191410 | MS.gene70817:CDS | 45.0% |
| !! | AAAGTCTTCTCTGGAACTGG+AGG | - | chr1.2:61190382-61190401 | None:intergenic | 45.0% |
| !! | GCTTGCTATTGGGCATATTG+TGG | + | chr1.2:61190825-61190844 | MS.gene70817:intron | 45.0% |
| !! | GGTAAAGTCTTCTCTGGAAC+TGG | - | chr1.2:61190385-61190404 | None:intergenic | 45.0% |
| !! | TCCAAAGATTGAGCTTGCTG+GGG | - | chr1.2:61191379-61191398 | None:intergenic | 45.0% |
| !! | AAATAAATATATAAGAATTA+AGG | + | chr1.2:61190245-61190264 | MS.gene70817:intron | 5.0% |
| AAAATCCCCTTTGGCAGCCA+TGG | - | chr1.2:61189799-61189818 | None:intergenic | 50.0% | |
| AAATCCCCTTTGGCAGCCAT+GGG | - | chr1.2:61189798-61189817 | None:intergenic | 50.0% | |
| ACCGGAGATGTTGAGAGTCA+TGG | + | chr1.2:61191119-61191138 | MS.gene70817:CDS | 50.0% | |
| CCAGCAAGCTCAATCTTTGG+AGG | + | chr1.2:61191378-61191397 | MS.gene70817:CDS | 50.0% | |
| CCTCCAAAGATTGAGCTTGC+TGG | - | chr1.2:61191381-61191400 | None:intergenic | 50.0% | |
| GAAGAAGTGGAGTGTGGGAA+AGG | + | chr1.2:61190043-61190062 | MS.gene70817:CDS | 50.0% | |
| GTGTGGGAAAGGAAACTGTG+TGG | + | chr1.2:61190054-61190073 | MS.gene70817:CDS | 50.0% | |
| TACTTCCCATGGCTGCCAAA+GGG | + | chr1.2:61189790-61189809 | MS.gene70817:CDS | 50.0% | |
| TCCCCAGCAAGCTCAATCTT+TGG | + | chr1.2:61191375-61191394 | MS.gene70817:CDS | 50.0% | |
| ACTTCCCATGGCTGCCAAAG+GGG | + | chr1.2:61189791-61189810 | MS.gene70817:CDS | 55.0% | |
| CTACTTCCCATGGCTGCCAA+AGG | + | chr1.2:61189789-61189808 | MS.gene70817:CDS | 55.0% | |
| !! | GTCTTCTCTGGAACTGGAGG+AGG | - | chr1.2:61190379-61190398 | None:intergenic | 55.0% |
| ! | TCTGGAACTGGAGGAGGTGC+TGG | - | chr1.2:61190373-61190392 | None:intergenic | 60.0% |
| !! | GAACTGGAGGAGGTGCTGGT+TGG | - | chr1.2:61190369-61190388 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 61189741 | 61191493 | 61189741 | ID=MS.gene70817 |
| chr1.2 | mRNA | 61189741 | 61191493 | 61189741 | ID=MS.gene70817.t1;Parent=MS.gene70817 |
| chr1.2 | exon | 61189741 | 61189834 | 61189741 | ID=MS.gene70817.t1.exon1;Parent=MS.gene70817.t1 |
| chr1.2 | CDS | 61189741 | 61189834 | 61189741 | ID=cds.MS.gene70817.t1;Parent=MS.gene70817.t1 |
| chr1.2 | exon | 61190032 | 61190193 | 61190032 | ID=MS.gene70817.t1.exon2;Parent=MS.gene70817.t1 |
| chr1.2 | CDS | 61190032 | 61190193 | 61190032 | ID=cds.MS.gene70817.t1;Parent=MS.gene70817.t1 |
| chr1.2 | exon | 61190347 | 61190427 | 61190347 | ID=MS.gene70817.t1.exon3;Parent=MS.gene70817.t1 |
| chr1.2 | CDS | 61190347 | 61190427 | 61190347 | ID=cds.MS.gene70817.t1;Parent=MS.gene70817.t1 |
| chr1.2 | exon | 61190826 | 61190951 | 61190826 | ID=MS.gene70817.t1.exon4;Parent=MS.gene70817.t1 |
| chr1.2 | CDS | 61190826 | 61190951 | 61190826 | ID=cds.MS.gene70817.t1;Parent=MS.gene70817.t1 |
| chr1.2 | exon | 61191069 | 61191140 | 61191069 | ID=MS.gene70817.t1.exon5;Parent=MS.gene70817.t1 |
| chr1.2 | CDS | 61191069 | 61191140 | 61191069 | ID=cds.MS.gene70817.t1;Parent=MS.gene70817.t1 |
| chr1.2 | exon | 61191333 | 61191493 | 61191333 | ID=MS.gene70817.t1.exon6;Parent=MS.gene70817.t1 |
| chr1.2 | CDS | 61191333 | 61191493 | 61191333 | ID=cds.MS.gene70817.t1;Parent=MS.gene70817.t1 |
| Gene Sequence |
| Protein sequence |
