Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71016.t1 | XP_003590183.2 | 97.4 | 729 | 19 | 0 | 1 | 729 | 98 | 826 | 0.00E+00 | 1439.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71016.t1 | Q84LK0 | 71.4 | 730 | 208 | 1 | 1 | 729 | 96 | 825 | 3.9e-309 | 1061.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71016.t1 | G7I6Q0 | 97.4 | 729 | 19 | 0 | 1 | 729 | 98 | 826 | 0.0e+00 | 1439.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene71016 | 0.809313 | 2.01E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene71016 | 0.810865 | 9.32E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene71016 | 0.800684 | 1.28E-48 | -1.69E-46 |
| MS.gene059711 | MS.gene71016 | 0.830872 | 2.30E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71016.t1 | MTR_1g045670 | 97.394 | 729 | 19 | 0 | 1 | 729 | 98 | 826 | 0.0 | 1481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71016.t1 | AT3G24320 | 71.370 | 730 | 208 | 1 | 1 | 729 | 96 | 825 | 0.0 | 1090 |
| MS.gene71016.t1 | AT3G24320 | 69.310 | 580 | 177 | 1 | 151 | 729 | 1 | 580 | 0.0 | 826 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATGTATATGGACTTAT+TGG | 0.082800 | 1.4:-30168283 | MS.gene71016:CDS |
| TTTGAAATAACCTTGAATTT+TGG | 0.143407 | 1.4:+30165662 | None:intergenic |
| TAACCGTGTCTTCGGGAAAT+AGG | 0.174632 | 1.4:-30166682 | MS.gene71016:CDS |
| GTAGATGTTCCAAGAGTTAA+AGG | 0.212866 | 1.4:+30166653 | None:intergenic |
| CTTTGGTTCTCAGGTATGTT+AGG | 0.214976 | 1.4:-30165722 | MS.gene71016:intron |
| CGACCCTGTTTCTGATCTTT+TGG | 0.234521 | 1.4:-30166869 | MS.gene71016:CDS |
| TGATCACAAAAGTTCATTTC+AGG | 0.235726 | 1.4:-30160204 | None:intergenic |
| TATAGACTACCTCAAGCTTC+TGG | 0.239162 | 1.4:+30161309 | None:intergenic |
| CTTGGAACATCTACTCAAAT+TGG | 0.241948 | 1.4:-30166644 | MS.gene71016:intron |
| AAGCATGATAGAGTCAAAAT+AGG | 0.256430 | 1.4:+30160253 | None:intergenic |
| AGATATAAAACGACGTTTCT+TGG | 0.262650 | 1.4:+30168499 | None:intergenic |
| ACTTGGGATATGTGGACTTA+TGG | 0.268862 | 1.4:-30160300 | MS.gene71016:CDS |
| TTCTTGGTTCGAGCTTGAGC+TGG | 0.277875 | 1.4:+30168515 | None:intergenic |
| GAAATATTGAAACATTTAAT+TGG | 0.278079 | 1.4:-30164407 | MS.gene71016:CDS |
| TTGCCTTGACATTTGCTTCA+TGG | 0.279311 | 1.4:+30162170 | None:intergenic |
| TTCTTTGGTTTCAGAATCTT+AGG | 0.288160 | 1.4:-30168805 | MS.gene71016:intron |
| CAAGGCAAACACTAGAGTTT+TGG | 0.296309 | 1.4:-30162155 | MS.gene71016:CDS |
| CCAGGAAATCCCTATGTATA+TGG | 0.297064 | 1.4:-30168292 | MS.gene71016:CDS |
| GGTCCCACGTGGGTGGCTAC+TGG | 0.307487 | 1.4:-30164386 | MS.gene71016:CDS |
| GAATCCTTTACTCACAATAT+TGG | 0.308722 | 1.4:+30166481 | None:intergenic |
| AACGCTTTATACCAAATATA+TGG | 0.309972 | 1.4:-30162420 | MS.gene71016:CDS |
| CCTATGTATATGGACTTATT+GGG | 0.310239 | 1.4:-30168282 | MS.gene71016:CDS |
| CACAACAGGGCAACCAGCTC+TGG | 0.320896 | 1.4:+30169342 | None:intergenic |
| ACGTCCAAGTGGGCAGAATT+TGG | 0.331384 | 1.4:-30166949 | MS.gene71016:CDS |
| ACCACACTGCTTCCTGTTCC+CGG | 0.334290 | 1.4:+30162452 | None:intergenic |
| CCATATACATAGGGATTTCC+TGG | 0.337764 | 1.4:+30168292 | None:intergenic |
| TTCTGAAGAATATGTCTTCA+TGG | 0.338718 | 1.4:+30167478 | None:intergenic |
| ATTTGTGCTGCTGCACTACT+TGG | 0.350396 | 1.4:-30160317 | MS.gene71016:CDS |
| TCTACAAAGTTCAATATGAT+TGG | 0.351830 | 1.4:+30164484 | None:intergenic |
| TCTGCTATGTTGAACCAATA+TGG | 0.360428 | 1.4:+30160431 | None:intergenic |
| AACCGTGTCTTCGGGAAATA+GGG | 0.360958 | 1.4:-30166681 | MS.gene71016:CDS |
| TTCTGGGATTCTACTATTGT+AGG | 0.364870 | 1.4:+30161326 | None:intergenic |
| GGGGTACCAGTCCATATATT+TGG | 0.374561 | 1.4:+30162409 | None:intergenic |
| CAGTGTAACATGCTCAATTC+CGG | 0.387233 | 1.4:-30165481 | MS.gene71016:CDS |
| AGACATTCTGAATGGTTTGA+TGG | 0.391680 | 1.4:-30166892 | MS.gene71016:CDS |
| TCGTAACGTAACCGTGTCTT+CGG | 0.393490 | 1.4:-30166690 | MS.gene71016:CDS |
| AGGGAGAAATATCTTATTCC+CGG | 0.394099 | 1.4:-30162471 | MS.gene71016:CDS |
| TAGTTGGTTTATTACCATAT+TGG | 0.395583 | 1.4:-30160445 | MS.gene71016:CDS |
| TTTGGTTCTCAGGTATGTTA+GGG | 0.397494 | 1.4:-30165721 | MS.gene71016:intron |
| ATAGACTACCTCAAGCTTCT+GGG | 0.407010 | 1.4:+30161310 | None:intergenic |
| GTGAAGGGAGAAGAAGGAAA+TGG | 0.407787 | 1.4:-30161355 | MS.gene71016:CDS |
| AGGGCTCAACCTTTAACTCT+TGG | 0.413129 | 1.4:-30166662 | MS.gene71016:CDS |
| CGTAACGTAACCGTGTCTTC+GGG | 0.413318 | 1.4:-30166689 | MS.gene71016:CDS |
| TGTTTAATTTGTTCCTCTCC+AGG | 0.418327 | 1.4:+30162388 | None:intergenic |
| TGGAATACCTTCTTTGTTGA+AGG | 0.419005 | 1.4:-30166533 | MS.gene71016:CDS |
| ATCAAACCATTCAGAATGTC+TGG | 0.427480 | 1.4:+30166894 | None:intergenic |
| TTGACCAAAAGATCAGAAAC+AGG | 0.429669 | 1.4:+30166865 | None:intergenic |
| CTTGATTTACCACCACCATT+TGG | 0.431025 | 1.4:+30160353 | None:intergenic |
| GGAGACTTCTATGAAACTCT+TGG | 0.431107 | 1.4:-30169436 | MS.gene71016:CDS |
| TTCAATATTTCATTGAGCTC+AGG | 0.431501 | 1.4:+30164419 | None:intergenic |
| CTTGAATACTCAAATTTGCT+TGG | 0.433294 | 1.4:-30170863 | MS.gene71016:CDS |
| ACATAGGTAAAGGAGCTCTA+TGG | 0.435253 | 1.4:-30166734 | MS.gene71016:intron |
| AATATCTTATTCCCGGGAAC+AGG | 0.435984 | 1.4:-30162464 | MS.gene71016:CDS |
| TGAAGGGAGAAGAAGGAAAT+GGG | 0.436793 | 1.4:-30161354 | MS.gene71016:CDS |
| TTGAGGATATGGAGTCTGTA+TGG | 0.437197 | 1.4:-30162741 | MS.gene71016:CDS |
| CCTACTACAGGCATAGGTTC+TGG | 0.437803 | 1.4:+30168238 | None:intergenic |
| TTCACCAAATTCTGCCCACT+TGG | 0.439880 | 1.4:+30166945 | None:intergenic |
| GTCTCAACTTAGAGCTCCTA+AGG | 0.447138 | 1.4:-30162491 | MS.gene71016:CDS |
| TCAGAATCTTAGGCAAACTT+TGG | 0.447427 | 1.4:-30168795 | MS.gene71016:intron |
| CAATCATTATTTCTATTGAC+AGG | 0.448373 | 1.4:-30160377 | MS.gene71016:CDS |
| TATTTCTGCATACATCTTTG+AGG | 0.450139 | 1.4:-30167397 | MS.gene71016:CDS |
| GAGATTGCATCCAAAATTCA+AGG | 0.450407 | 1.4:-30165672 | MS.gene71016:intron |
| TATGCGGGTTTAAATCCCTT+TGG | 0.450508 | 1.4:-30169388 | MS.gene71016:CDS |
| AAACATGCTTTAGATTCTAA+AGG | 0.460656 | 1.4:-30162361 | MS.gene71016:CDS |
| AGCATGATAGAGTCAAAATA+GGG | 0.468162 | 1.4:+30160254 | None:intergenic |
| TCTTGGTTCGAGCTTGAGCT+GGG | 0.468735 | 1.4:+30168516 | None:intergenic |
| GAATAAGATATTTCTCCCTT+AGG | 0.469726 | 1.4:+30162475 | None:intergenic |
| GATTCTAAAGGTAGAAAGGT+AGG | 0.469843 | 1.4:-30162349 | MS.gene71016:CDS |
| GTCCCACGTGGGTGGCTACT+GGG | 0.474837 | 1.4:-30164385 | MS.gene71016:CDS |
| AATCGCAAGATGAAGATAGT+TGG | 0.476644 | 1.4:-30160461 | MS.gene71016:CDS |
| ATAGATTCTAATTTGAAGAA+TGG | 0.478962 | 1.4:-30170839 | MS.gene71016:CDS |
| TTTAGATTCTAAAGGTAGAA+AGG | 0.482930 | 1.4:-30162353 | MS.gene71016:CDS |
| CACATGAGCATATAACGCTT+TGG | 0.483246 | 1.4:+30162054 | None:intergenic |
| GAAGAAACACACGTAAATTC+CGG | 0.487982 | 1.4:+30165462 | None:intergenic |
| GATTGACGAAGTAATATCTC+TGG | 0.490505 | 1.4:-30162818 | MS.gene71016:CDS |
| AGGAATTTCTCATTCGGCAA+GGG | 0.490800 | 1.4:-30167528 | MS.gene71016:CDS |
| GCTGCACTACTTGGGATATG+TGG | 0.491552 | 1.4:-30160308 | MS.gene71016:CDS |
| GGAATCACGGCGGATTCAGC+AGG | 0.494688 | 1.4:+30160275 | None:intergenic |
| GAGACTTCTATGAAACTCTT+GGG | 0.495809 | 1.4:-30169435 | MS.gene71016:CDS |
| CCCAATAAGTCCATATACAT+AGG | 0.496515 | 1.4:+30168282 | None:intergenic |
| TTGGATGCAATCTCATAAGA+AGG | 0.501103 | 1.4:+30165681 | None:intergenic |
| GTTTAATTTGTTCCTCTCCA+GGG | 0.501339 | 1.4:+30162389 | None:intergenic |
| ACTTTCAGGCATGCTCATCC+AGG | 0.506081 | 1.4:-30168310 | MS.gene71016:intron |
| AAGTAAGCACATCATTTATG+TGG | 0.507055 | 1.4:+30162698 | None:intergenic |
| ATCTGATCGTAGACCGCCAA+AGG | 0.508138 | 1.4:+30169372 | None:intergenic |
| CCACACTGCTTCCTGTTCCC+GGG | 0.508620 | 1.4:+30162453 | None:intergenic |
| CCAGAACCTATGCCTGTAGT+AGG | 0.508789 | 1.4:-30168238 | MS.gene71016:intron |
| GCGGGTTTAAATCCCTTTGG+CGG | 0.509226 | 1.4:-30169385 | MS.gene71016:CDS |
| ACAGGAAGCAGTGTGGTTCA+AGG | 0.510474 | 1.4:-30162446 | MS.gene71016:CDS |
| TTGGATGATCTTACACGCAA+TGG | 0.510915 | 1.4:-30168776 | MS.gene71016:CDS |
| TGTTTGTGCAGTCTGAAGGC+AGG | 0.511359 | 1.4:-30169744 | MS.gene71016:intron |
| GTAGTTCCAGACATTCTGAA+TGG | 0.514478 | 1.4:-30166900 | MS.gene71016:CDS |
| TTTCTATTGACAGGACCAAA+TGG | 0.518729 | 1.4:-30160368 | MS.gene71016:CDS |
| TTTAATTTGTTCCTCTCCAG+GGG | 0.519994 | 1.4:+30162390 | None:intergenic |
| AGTAAGACCTTCAACAAAGA+AGG | 0.520985 | 1.4:+30166526 | None:intergenic |
| AGGTGGAGGCCGCCTTATCA+AGG | 0.528089 | 1.4:-30162303 | MS.gene71016:intron |
| AATATGTCTTCATGGTCTCT+AGG | 0.529158 | 1.4:+30167486 | None:intergenic |
| CTTGCAGTGAAGGGAGAAGA+AGG | 0.529921 | 1.4:-30161361 | MS.gene71016:intron |
| ACAACAGGGCAACCAGCTCT+GGG | 0.532588 | 1.4:+30169343 | None:intergenic |
| TGTATTGTGGAGGAAGTTCA+AGG | 0.534291 | 1.4:-30168539 | MS.gene71016:CDS |
| TACGTGTGTTTCTTCAGCAA+AGG | 0.535657 | 1.4:-30165454 | MS.gene71016:intron |
| ATTCTAATTTGAAGAATGGA+AGG | 0.536629 | 1.4:-30170835 | MS.gene71016:intron |
| TCAGGTGTCATTCCGACGGA+TGG | 0.539058 | 1.4:-30166553 | MS.gene71016:intron |
| CCAATAAGTCCATATACATA+GGG | 0.541341 | 1.4:+30168283 | None:intergenic |
| TTCATCAGGAATAGCAGAGA+AGG | 0.546650 | 1.4:+30162768 | None:intergenic |
| CAACAATGAATCTAATTGAA+AGG | 0.547593 | 1.4:-30170886 | None:intergenic |
| CAGAGCTGGTTGCCCTGTTG+TGG | 0.547718 | 1.4:-30169341 | MS.gene71016:intron |
| AGACATTGACTTCAAAACCT+TGG | 0.551104 | 1.4:-30164360 | MS.gene71016:intron |
| TCAGATAGCATCCCCAGAGC+TGG | 0.552374 | 1.4:-30169355 | MS.gene71016:CDS |
| TGCTAAGCTACTTGAATGGA+AGG | 0.553515 | 1.4:-30164510 | MS.gene71016:CDS |
| TTTGTGCTGCTGCACTACTT+GGG | 0.553681 | 1.4:-30160316 | MS.gene71016:CDS |
| GTCCTCAGCTGCTTTGTCCA+CGG | 0.556624 | 1.4:+30162675 | None:intergenic |
| CAGGAAGCAGTGTGGTTCAA+GGG | 0.561932 | 1.4:-30162445 | MS.gene71016:CDS |
| TGTATTCTAGTTGAATATGC+GGG | 0.564114 | 1.4:-30169403 | MS.gene71016:CDS |
| TTCTGCATACATCTTTGAGG+AGG | 0.564693 | 1.4:-30167394 | MS.gene71016:CDS |
| TTGTATTCTAGTTGAATATG+CGG | 0.566102 | 1.4:-30169404 | MS.gene71016:CDS |
| TTTATACCAAATATATGGAC+TGG | 0.566964 | 1.4:-30162415 | MS.gene71016:CDS |
| TGGGCAGAATTTGGTGAAGG+GGG | 0.568706 | 1.4:-30166940 | MS.gene71016:CDS |
| GTAGAAAGGTAGGTGAGGAA+TGG | 0.569613 | 1.4:-30162339 | MS.gene71016:CDS |
| GGGAGAAATATCTTATTCCC+GGG | 0.571092 | 1.4:-30162470 | MS.gene71016:CDS |
| AAGGAATTTCTCATTCGGCA+AGG | 0.571429 | 1.4:-30167529 | MS.gene71016:CDS |
| AGCCCTATTTCCCGAAGACA+CGG | 0.578819 | 1.4:+30166679 | None:intergenic |
| AAATGATGTGCTTACTTCCG+TGG | 0.579926 | 1.4:-30162692 | MS.gene71016:CDS |
| AACATTTAATTGGTCCCACG+TGG | 0.581952 | 1.4:-30164397 | MS.gene71016:CDS |
| AAGTGGGCAGAATTTGGTGA+AGG | 0.584310 | 1.4:-30166943 | MS.gene71016:CDS |
| TTCCGTGGACAAAGCAGCTG+AGG | 0.588630 | 1.4:-30162677 | MS.gene71016:CDS |
| AATATATGGACTGGTACCCC+TGG | 0.588784 | 1.4:-30162406 | MS.gene71016:CDS |
| TTACTTCCACCACATTGCAG+TGG | 0.589221 | 1.4:-30166508 | MS.gene71016:CDS |
| GTGGTAAATCAAGTTTACTT+CGG | 0.593011 | 1.4:-30160343 | MS.gene71016:CDS |
| AGAGTCAAAATAGGGAATCA+CGG | 0.597474 | 1.4:+30160262 | None:intergenic |
| CTATGTATATGGACTTATTG+GGG | 0.597957 | 1.4:-30168281 | MS.gene71016:CDS |
| TAAAGGTAGAAAGGTAGGTG+AGG | 0.597978 | 1.4:-30162344 | MS.gene71016:CDS |
| GGAATTTCTCATTCGGCAAG+GGG | 0.600989 | 1.4:-30167527 | MS.gene71016:CDS |
| CTGCAGAGTAAAACTTGACG+TGG | 0.603855 | 1.4:+30169681 | None:intergenic |
| AGTGGGCAGAATTTGGTGAA+GGG | 0.606015 | 1.4:-30166942 | MS.gene71016:CDS |
| TTCATACCTACTACAGGCAT+AGG | 0.606169 | 1.4:+30168232 | None:intergenic |
| CATCTCAGGTGTCATTCCGA+CGG | 0.606918 | 1.4:-30166557 | MS.gene71016:intron |
| GCTCTATGGTCTTGATCATG+AGG | 0.608538 | 1.4:-30166720 | MS.gene71016:CDS |
| AGATTGCTAAGCTACTTGAA+TGG | 0.611550 | 1.4:-30164514 | MS.gene71016:CDS |
| TATTGGTTCAACATAGCAGA+AGG | 0.611717 | 1.4:-30160428 | MS.gene71016:CDS |
| GTGGGCAGAATTTGGTGAAG+GGG | 0.613445 | 1.4:-30166941 | MS.gene71016:CDS |
| ATGTATGCAGAAATAAGTGA+TGG | 0.616639 | 1.4:+30167405 | None:intergenic |
| TTTAATTGGTCCCACGTGGG+TGG | 0.617159 | 1.4:-30164393 | MS.gene71016:CDS |
| AGTAGAATCCCAGAAGCTTG+AGG | 0.618095 | 1.4:-30161318 | MS.gene71016:intron |
| ATGGTTTACCACTACGAAGG+TGG | 0.620328 | 1.4:-30162320 | MS.gene71016:CDS |
| TACACGCAATGGTTATTCAG+TGG | 0.620651 | 1.4:-30168765 | MS.gene71016:intron |
| TTTGTCTTGACAGTGTATTG+TGG | 0.626135 | 1.4:-30168552 | MS.gene71016:intron |
| TTGACAGGACCAAATGGTGG+TGG | 0.627465 | 1.4:-30160362 | MS.gene71016:CDS |
| AAAGAAGGTATTCCATCCGT+CGG | 0.632398 | 1.4:+30166541 | None:intergenic |
| GATGCAATCTCATAAGAAGG+AGG | 0.635557 | 1.4:+30165684 | None:intergenic |
| TCTGATCGTAGACCGCCAAA+GGG | 0.635573 | 1.4:+30169373 | None:intergenic |
| GACGAAGTAATATCTCTGGA+TGG | 0.636880 | 1.4:-30162814 | MS.gene71016:CDS |
| GTACCATGAAGCAAATGTCA+AGG | 0.637451 | 1.4:-30162173 | MS.gene71016:CDS |
| GGGCAGAATTTGGTGAAGGG+GGG | 0.640513 | 1.4:-30166939 | MS.gene71016:CDS |
| GATATGGAGTCTGTATGGAA+AGG | 0.640527 | 1.4:-30162736 | MS.gene71016:CDS |
| ATGGACTGGTACCCCTGGAG+AGG | 0.642746 | 1.4:-30162401 | MS.gene71016:CDS |
| GTCTTGACAGTGTATTGTGG+AGG | 0.642804 | 1.4:-30168549 | MS.gene71016:intron |
| GTTTACCACTACGAAGGTGG+AGG | 0.643110 | 1.4:-30162317 | MS.gene71016:CDS |
| AAGCGTTATATGCTCATGTG+AGG | 0.646209 | 1.4:-30162051 | MS.gene71016:intron |
| TCTTTGAGGAGGAATTCTTG+TGG | 0.648468 | 1.4:-30167383 | MS.gene71016:intron |
| TCTCAACTTAGAGCTCCTAA+GGG | 0.649001 | 1.4:-30162490 | MS.gene71016:CDS |
| ATGCAATCTCATAAGAAGGA+GGG | 0.653021 | 1.4:+30165685 | None:intergenic |
| CTATTGACAGGACCAAATGG+TGG | 0.654961 | 1.4:-30160365 | MS.gene71016:CDS |
| AGGAGCTCTAAGTTGAGACA+TGG | 0.668968 | 1.4:+30162495 | None:intergenic |
| ACATTTAATTGGTCCCACGT+GGG | 0.675111 | 1.4:-30164396 | MS.gene71016:CDS |
| TGGTTCAACATAGCAGAAGG+AGG | 0.676802 | 1.4:-30160425 | MS.gene71016:CDS |
| GGCGGCCTCCACCTTCGTAG+TGG | 0.679029 | 1.4:+30162312 | None:intergenic |
| TATTTCAGGAACGTCCAAGT+GGG | 0.679077 | 1.4:-30166959 | MS.gene71016:intron |
| TAAGCTACTTGAATGGAAGG+AGG | 0.685452 | 1.4:-30164507 | MS.gene71016:CDS |
| CAACAGGGCAACCAGCTCTG+GGG | 0.696033 | 1.4:+30169344 | None:intergenic |
| GGTAATCCACTGCAATGTGG+TGG | 0.696559 | 1.4:+30166502 | None:intergenic |
| GTATTTCAGGAACGTCCAAG+TGG | 0.706411 | 1.4:-30166960 | MS.gene71016:intron |
| TGACCAAAAGATCAGAAACA+GGG | 0.713078 | 1.4:+30166866 | None:intergenic |
| TAACCCAGTAGCCACCCACG+TGG | 0.719610 | 1.4:+30164382 | None:intergenic |
| CCCGGGAACAGGAAGCAGTG+TGG | 0.720310 | 1.4:-30162453 | MS.gene71016:CDS |
| GGAATGGTTTACCACTACGA+AGG | 0.726194 | 1.4:-30162323 | MS.gene71016:CDS |
| GAATTTCTCATTCGGCAAGG+GGG | 0.728126 | 1.4:-30167526 | MS.gene71016:CDS |
| TTTGGTAATCACGAGCAATG+TGG | 0.728156 | 1.4:+30162072 | None:intergenic |
| AAAATGCCAATACCACAACA+GGG | 0.735670 | 1.4:+30169329 | None:intergenic |
| AACCCAGTAGCCACCCACGT+GGG | 0.743986 | 1.4:+30164383 | None:intergenic |
| ATTGGTAATCCACTGCAATG+TGG | 0.767045 | 1.4:+30166499 | None:intergenic |
| GTCAAAATAGGGAATCACGG+CGG | 0.796421 | 1.4:+30160265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 30160205 | 30170903 | 30160205 | ID=MS.gene71016 |
| chr1.4 | mRNA | 30160205 | 30170903 | 30160205 | ID=MS.gene71016.t1;Parent=MS.gene71016 |
| chr1.4 | exon | 30170836 | 30170903 | 30170836 | ID=MS.gene71016.t1.exon1;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30170836 | 30170903 | 30170836 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30169680 | 30169755 | 30169680 | ID=MS.gene71016.t1.exon2;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30169680 | 30169755 | 30169680 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30169342 | 30169461 | 30169342 | ID=MS.gene71016.t1.exon3;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30169342 | 30169461 | 30169342 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30168766 | 30168813 | 30168766 | ID=MS.gene71016.t1.exon4;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30168766 | 30168813 | 30168766 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30168497 | 30168561 | 30168497 | ID=MS.gene71016.t1.exon5;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30168497 | 30168561 | 30168497 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30168239 | 30168324 | 30168239 | ID=MS.gene71016.t1.exon6;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30168239 | 30168324 | 30168239 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30167384 | 30167548 | 30167384 | ID=MS.gene71016.t1.exon7;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30167384 | 30167548 | 30167384 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30166864 | 30166973 | 30166864 | ID=MS.gene71016.t1.exon8;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30166864 | 30166973 | 30166864 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30166645 | 30166750 | 30166645 | ID=MS.gene71016.t1.exon9;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30166645 | 30166750 | 30166645 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30166496 | 30166571 | 30166496 | ID=MS.gene71016.t1.exon10;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30166496 | 30166571 | 30166496 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30165673 | 30165731 | 30165673 | ID=MS.gene71016.t1.exon11;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30165673 | 30165731 | 30165673 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30165455 | 30165522 | 30165455 | ID=MS.gene71016.t1.exon12;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30165455 | 30165522 | 30165455 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30164361 | 30164534 | 30164361 | ID=MS.gene71016.t1.exon13;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30164361 | 30164534 | 30164361 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30162663 | 30162869 | 30162663 | ID=MS.gene71016.t1.exon14;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30162663 | 30162869 | 30162663 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30162304 | 30162560 | 30162304 | ID=MS.gene71016.t1.exon15;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30162304 | 30162560 | 30162304 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30162052 | 30162195 | 30162052 | ID=MS.gene71016.t1.exon16;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30162052 | 30162195 | 30162052 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30161319 | 30161376 | 30161319 | ID=MS.gene71016.t1.exon17;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30161319 | 30161376 | 30161319 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| chr1.4 | exon | 30160205 | 30160504 | 30160205 | ID=MS.gene71016.t1.exon18;Parent=MS.gene71016.t1 |
| chr1.4 | CDS | 30160205 | 30160504 | 30160205 | ID=cds.MS.gene71016.t1;Parent=MS.gene71016.t1 |
| Gene Sequence |
| Protein sequence |
