Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71233.t1 | XP_004509954.1 | 93.8 | 113 | 7 | 0 | 62 | 174 | 249 | 361 | 5.10E-57 | 230.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71233.t1 | Q9ZPQ3 | 71.3 | 115 | 29 | 1 | 63 | 173 | 202 | 316 | 8.6e-45 | 181.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71233.t1 | A0A1S2YU38 | 93.8 | 113 | 7 | 0 | 62 | 174 | 249 | 361 | 3.7e-57 | 230.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene71233 | 0.819545 | 1.10E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene71233 | 0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene052208 | MS.gene71233 | 0.803983 | 2.69E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene71233 | 0.806379 | 8.46E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene71233 | 0.808567 | 2.91E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene71233 | 0.815832 | 7.55E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene71233 | 0.823754 | 1.17E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71233.t1 | MTR_8g066120 | 92.920 | 113 | 8 | 0 | 62 | 174 | 201 | 313 | 7.12e-73 | 222 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71233.t1 | AT2G03800 | 71.304 | 115 | 29 | 1 | 63 | 173 | 202 | 316 | 4.28e-55 | 176 |
| MS.gene71233.t1 | AT2G03800 | 71.304 | 115 | 29 | 1 | 63 | 173 | 246 | 360 | 7.01e-55 | 177 |
Find 47 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACATTTGTTTCTCCTTT+TGG | 0.150136 | 8.3:-36768989 | None:intergenic |
| TGGGTTGGTCACCTACTTTC+TGG | 0.174476 | 8.3:+36768944 | MS.gene71233:CDS |
| AACACTCAATAAAAGTAATT+TGG | 0.197331 | 8.3:-36769413 | None:intergenic |
| GCGGAGCAGAATATTAAAAT+TGG | 0.268594 | 8.3:+36769386 | MS.gene71233:CDS |
| AATATAGGAAAGATGATGTT+TGG | 0.316445 | 8.3:+36768924 | MS.gene71233:intron |
| TCACCTACTTTCTGGATATT+CGG | 0.318220 | 8.3:+36768952 | MS.gene71233:CDS |
| TCTCTTCTCCCTCTTCTTCA+AGG | 0.319890 | 8.3:+36767368 | MS.gene71233:CDS |
| GATAAGAAGAAAGTCCTTCT+TGG | 0.358937 | 8.3:+36768498 | MS.gene71233:CDS |
| AGAGAGACTCTGAGTAGAAA+AGG | 0.378080 | 8.3:+36766557 | MS.gene71233:CDS |
| GGAGAAACAAATGTAGAGAT+TGG | 0.379058 | 8.3:+36768995 | MS.gene71233:CDS |
| GTCTATAAAAGCTGCATTCG+AGG | 0.406406 | 8.3:+36769033 | MS.gene71233:CDS |
| ACATTATGTGCCTCGGCATA+TGG | 0.407678 | 8.3:+36768533 | MS.gene71233:CDS |
| AATTTACTGCAGGAGTTTCA+AGG | 0.417491 | 8.3:+36769331 | MS.gene71233:intron |
| CTCCCTCTTCTTCAAGGAAA+GGG | 0.423571 | 8.3:+36767374 | MS.gene71233:CDS |
| ATAAGAAGAAAGTCCTTCTT+GGG | 0.451631 | 8.3:+36768499 | MS.gene71233:CDS |
| TTCTGGATATTCGGTGCCAA+TGG | 0.497093 | 8.3:+36768961 | MS.gene71233:CDS |
| ATGTAGAGATTGGAGGAACT+TGG | 0.504571 | 8.3:+36769005 | MS.gene71233:CDS |
| ATATAGGAAAGATGATGTTT+GGG | 0.508580 | 8.3:+36768925 | MS.gene71233:intron |
| GTCCTTCTTGGGATAGGCGG+TGG | 0.509514 | 8.3:+36768510 | MS.gene71233:CDS |
| ATTTACTGCAGGAGTTTCAA+GGG | 0.511764 | 8.3:+36769332 | MS.gene71233:intron |
| GAGAGACTCTGAGTAGAAAA+GGG | 0.522752 | 8.3:+36766558 | MS.gene71233:CDS |
| TGGCAGAAGAATGCCATCAC+AGG | 0.525499 | 8.3:+36769356 | MS.gene71233:CDS |
| TGCGCAATAATTTCGCCACC+AGG | 0.526598 | 8.3:-36769073 | None:intergenic |
| TTCCCTTTCCTTGAAGAAGA+GGG | 0.529491 | 8.3:-36767376 | None:intergenic |
| TCTCCCTCTTCTTCAAGGAA+AGG | 0.530594 | 8.3:+36767373 | MS.gene71233:CDS |
| AGGAAAGATGATGTTTGGGT+TGG | 0.533495 | 8.3:+36768929 | MS.gene71233:intron |
| TCTTGACAAAACTTCTATAC+CGG | 0.540282 | 8.3:+36766589 | MS.gene71233:CDS |
| AAGAAAGTCCTTCTTGGGAT+AGG | 0.543921 | 8.3:+36768504 | MS.gene71233:CDS |
| ACTGCAGGAGTTTCAAGGGC+TGG | 0.545446 | 8.3:+36769336 | MS.gene71233:intron |
| GAAACAAATGTAGAGATTGG+AGG | 0.558298 | 8.3:+36768998 | MS.gene71233:CDS |
| CTCCGCGAGGAATCCTGTGA+TGG | 0.566946 | 8.3:-36769369 | None:intergenic |
| ATTCCCTTTCCTTGAAGAAG+AGG | 0.570957 | 8.3:-36767377 | None:intergenic |
| ACTAACTGCAGGATTTCAGA+AGG | 0.571436 | 8.3:-36767409 | None:intergenic |
| GCACCGAATATCCAGAAAGT+AGG | 0.580008 | 8.3:-36768955 | None:intergenic |
| GTGCCAATGGAAGATCCAAA+AGG | 0.584393 | 8.3:+36768974 | MS.gene71233:CDS |
| CTGATAATGCAGCCATGGTG+AGG | 0.589998 | 8.3:+36767341 | MS.gene71233:CDS |
| GCGGTGGACATTATGTGCCT+CGG | 0.594821 | 8.3:+36768526 | MS.gene71233:CDS |
| AGATACTGATAATGCAGCCA+TGG | 0.609414 | 8.3:+36767336 | MS.gene71233:CDS |
| TTATTGCGCATCTTGACCAA+AGG | 0.621535 | 8.3:+36769086 | MS.gene71233:CDS |
| TCTGCAGATATGCTTGTCCA+TGG | 0.622203 | 8.3:+36766527 | None:intergenic |
| GTCCACCGCCTATCCCAAGA+AGG | 0.624058 | 8.3:-36768512 | None:intergenic |
| AAAGTCCTTCTTGGGATAGG+CGG | 0.642444 | 8.3:+36768507 | MS.gene71233:CDS |
| GAGTCTCTCTCTTTCCACCA+TGG | 0.651572 | 8.3:-36766544 | None:intergenic |
| GCAGATATGCTTGTCCATGG+TGG | 0.660110 | 8.3:+36766530 | None:intergenic |
| AACACTACATCCATATGCCG+AGG | 0.663300 | 8.3:-36768543 | None:intergenic |
| AGAAGAGAGAAGCCTCACCA+TGG | 0.684856 | 8.3:-36767353 | None:intergenic |
| TGCCATCACAGGATTCCTCG+CGG | 0.720531 | 8.3:+36769367 | MS.gene71233:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAGAAAAATAAAAC+GGG | - | chr8.3:36767868-36767887 | None:intergenic | 10.0% |
| !!! | AACATTTTTCTTTATAATTT+AGG | - | chr8.3:36766898-36766917 | None:intergenic | 10.0% |
| !!! | AAGTTAATTTTTTTTATTCA+AGG | - | chr8.3:36768886-36768905 | None:intergenic | 10.0% |
| !!! | GTTTGATATATATATTTTTT+TGG | + | chr8.3:36769234-36769253 | MS.gene71233:intron | 10.0% |
| !! | CATTGATAAAAAATTTAACT+TGG | - | chr8.3:36768368-36768387 | None:intergenic | 15.0% |
| !!! | CCTTAACTTAAATTATTTTT+GGG | + | chr8.3:36767826-36767845 | MS.gene71233:intron | 15.0% |
| !! | ATTATGGGAATAAATTACAT+TGG | + | chr8.3:36768643-36768662 | MS.gene71233:intron | 20.0% |
| !! | TTATTTATAAATACCATGTC+AGG | + | chr8.3:36767896-36767915 | MS.gene71233:intron | 20.0% |
| !! | TTCTATAATGAAAAATGAGA+AGG | - | chr8.3:36768322-36768341 | None:intergenic | 20.0% |
| !!! | CCCAAAAATAATTTAAGTTA+AGG | - | chr8.3:36767829-36767848 | None:intergenic | 20.0% |
| !!! | GCCTTAACTTAAATTATTTT+TGG | + | chr8.3:36767825-36767844 | MS.gene71233:intron | 20.0% |
| !!! | TTAAAGTTTCCTTCTAAAAT+CGG | + | chr8.3:36768423-36768442 | MS.gene71233:intron | 20.0% |
| !!! | TTCTGTAATTTTTCATTTTG+TGG | + | chr8.3:36767036-36767055 | MS.gene71233:intron | 20.0% |
| !!! | TTGATTTCAACTTTTAGATT+AGG | + | chr8.3:36767259-36767278 | MS.gene71233:intron | 20.0% |
| !!! | TTTTTTTATTCAAGGTAACA+AGG | - | chr8.3:36768878-36768897 | None:intergenic | 20.0% |
| ! | AAAAGAAAAATAAAACGGGA+AGG | - | chr8.3:36767864-36767883 | None:intergenic | 25.0% |
| ! | AAATTGATATACAAGACTAC+CGG | - | chr8.3:36766611-36766630 | None:intergenic | 25.0% |
| ! | AACATTATATAGAAGACACA+AGG | + | chr8.3:36767225-36767244 | MS.gene71233:intron | 25.0% |
| ! | AATATAGGAAAGATGATGTT+TGG | + | chr8.3:36768924-36768943 | MS.gene71233:intron | 25.0% |
| ! | AATGAACCAAACCTAAATAT+TGG | - | chr8.3:36768396-36768415 | None:intergenic | 25.0% |
| ! | AATTACATTGGTGAAAAACA+TGG | + | chr8.3:36768655-36768674 | MS.gene71233:intron | 25.0% |
| ! | ACCTATTCATAAAGTAGATT+TGG | - | chr8.3:36766689-36766708 | None:intergenic | 25.0% |
| ! | ACTTTATGAATAGGTTTAGA+AGG | + | chr8.3:36766694-36766713 | MS.gene71233:intron | 25.0% |
| ! | AGAACTCAAGAGTAAAAAAA+AGG | - | chr8.3:36768794-36768813 | None:intergenic | 25.0% |
| ! | AGTACACAGAAAATTATGTT+AGG | - | chr8.3:36767989-36768008 | None:intergenic | 25.0% |
| ! | ATATAGGAAAGATGATGTTT+GGG | + | chr8.3:36768925-36768944 | MS.gene71233:intron | 25.0% |
| ! | ATTACATTGGTGAAAAACAT+GGG | + | chr8.3:36768656-36768675 | MS.gene71233:intron | 25.0% |
| ! | CAATTATAAAGTCACTGAAA+TGG | - | chr8.3:36768577-36768596 | None:intergenic | 25.0% |
| ! | CCTATTCATAAAGTAGATTT+GGG | - | chr8.3:36766688-36766707 | None:intergenic | 25.0% |
| ! | CTGAATTGCATATATGTAAT+TGG | + | chr8.3:36768090-36768109 | MS.gene71233:intron | 25.0% |
| ! | TGCACACTTAAATAGATTAT+GGG | + | chr8.3:36768628-36768647 | MS.gene71233:intron | 25.0% |
| ! | TGTTAAATGAAGATTGTACT+TGG | - | chr8.3:36767080-36767099 | None:intergenic | 25.0% |
| ! | TTGTATATCAATTTACTGCT+GGG | + | chr8.3:36766617-36766636 | MS.gene71233:intron | 25.0% |
| ! | TTTGAAAAATTTCACTGAGA+AGG | - | chr8.3:36767515-36767534 | None:intergenic | 25.0% |
| !! | GAATTTTCTGATTGATGAAA+GGG | + | chr8.3:36768596-36768615 | MS.gene71233:intron | 25.0% |
| !! | TACGATTTGAAACAGATAAT+AGG | + | chr8.3:36769265-36769284 | MS.gene71233:intron | 25.0% |
| !! | TGAATTTTCTGATTGATGAA+AGG | + | chr8.3:36768595-36768614 | MS.gene71233:intron | 25.0% |
| !! | TGTAATTTTTCATTTTGTGG+TGG | + | chr8.3:36767039-36767058 | MS.gene71233:intron | 25.0% |
| !! | TTTAAGATACACAGAAATAG+AGG | + | chr8.3:36766972-36766991 | MS.gene71233:intron | 25.0% |
| !! | TTTAAGTTAAGGCTGAATAA+AGG | - | chr8.3:36767818-36767837 | None:intergenic | 25.0% |
| !!! | AAATTTTCACCGATTTTAGA+AGG | - | chr8.3:36768435-36768454 | None:intergenic | 25.0% |
| !!! | CTTAAATTATTTTTGGGACT+TGG | + | chr8.3:36767832-36767851 | MS.gene71233:intron | 25.0% |
| !!! | TTTACTCTAAAATTTACTGC+AGG | + | chr8.3:36769321-36769340 | MS.gene71233:intron | 25.0% |
| AACTGCTCATAGTATTACAA+GGG | - | chr8.3:36767731-36767750 | None:intergenic | 30.0% | |
| AGTGCTAAAACAGAATTTGA+TGG | - | chr8.3:36767134-36767153 | None:intergenic | 30.0% | |
| ATAAGAAGAAAGTCCTTCTT+GGG | + | chr8.3:36768499-36768518 | MS.gene71233:CDS | 30.0% | |
| ATATGCAATTCAGAAAGCTT+AGG | - | chr8.3:36768083-36768102 | None:intergenic | 30.0% | |
| ATGCACATTAAACTTACCTT+TGG | - | chr8.3:36769105-36769124 | None:intergenic | 30.0% | |
| ATGCATGAAGGAATAATATG+AGG | - | chr8.3:36768048-36768067 | None:intergenic | 30.0% | |
| ATTTAGGCGAAATAGATTTG+TGG | - | chr8.3:36766882-36766901 | None:intergenic | 30.0% | |
| CCCAAATCTACTTTATGAAT+AGG | + | chr8.3:36766685-36766704 | MS.gene71233:intron | 30.0% | |
| CTGCACACTTAAATAGATTA+TGG | + | chr8.3:36768627-36768646 | MS.gene71233:intron | 30.0% | |
| CTTGTATATCAATTTACTGC+TGG | + | chr8.3:36766616-36766635 | MS.gene71233:intron | 30.0% | |
| GCAAACAATTGATTACAGAA+AGG | - | chr8.3:36769131-36769150 | None:intergenic | 30.0% | |
| TAGCAAATTAATCAGACACT+TGG | + | chr8.3:36767660-36767679 | MS.gene71233:intron | 30.0% | |
| TCTCTCTTATGTCTGAAAAA+TGG | + | chr8.3:36767779-36767798 | MS.gene71233:intron | 30.0% | |
| TCTTGACAAAACTTCTATAC+CGG | + | chr8.3:36766589-36766608 | MS.gene71233:CDS | 30.0% | |
| TGTATATCAATTTACTGCTG+GGG | + | chr8.3:36766618-36766637 | MS.gene71233:intron | 30.0% | |
| TTAAAAAGCCTTCTTAGTAC+TGG | + | chr8.3:36767289-36767308 | MS.gene71233:intron | 30.0% | |
| TTCATAAAGTAGATTTGGGA+AGG | - | chr8.3:36766684-36766703 | None:intergenic | 30.0% | |
| TTTCTTCTTCTTGGATAACT+AGG | + | chr8.3:36767622-36767641 | MS.gene71233:intron | 30.0% | |
| ! | CAACTTTTAGATTAGGTAAC+AGG | + | chr8.3:36767266-36767285 | MS.gene71233:intron | 30.0% |
| ! | CATGATTTTTGAATGCATGA+AGG | - | chr8.3:36768060-36768079 | None:intergenic | 30.0% |
| ! | TTCAATCTGTTTCTTCTTCT+TGG | + | chr8.3:36767613-36767632 | MS.gene71233:intron | 30.0% |
| !! | TCTACATTTGTTTCTCCTTT+TGG | - | chr8.3:36768992-36769011 | None:intergenic | 30.0% |
| !!! | ATTTTGGCTTCTTTGAGTAT+TGG | - | chr8.3:36766814-36766833 | None:intergenic | 30.0% |
| !!! | TGCTTTGCTTTTTGCAATAT+AGG | + | chr8.3:36768909-36768928 | MS.gene71233:intron | 30.0% |
| !!! | TTTTGGCTTCTTTGAGTATT+GGG | - | chr8.3:36766813-36766832 | None:intergenic | 30.0% |
| AAGTTAAGGCTGAATAAAGG+AGG | - | chr8.3:36767815-36767834 | None:intergenic | 35.0% | |
| AATTTACTGCAGGAGTTTCA+AGG | + | chr8.3:36769331-36769350 | MS.gene71233:intron | 35.0% | |
| ACAGAACTAACCATTAGAGA+TGG | - | chr8.3:36767011-36767030 | None:intergenic | 35.0% | |
| ACTACAAAGGAATAACTCCA+AGG | - | chr8.3:36766749-36766768 | None:intergenic | 35.0% | |
| AGAAAAATAAAACGGGAAGG+AGG | - | chr8.3:36767861-36767880 | None:intergenic | 35.0% | |
| ATACACAGAAATAGAGGATC+TGG | + | chr8.3:36766978-36766997 | MS.gene71233:intron | 35.0% | |
| ATACTAAACAGAGAGAAGAG+TGG | + | chr8.3:36766645-36766664 | MS.gene71233:intron | 35.0% | |
| ATTTACTGCAGGAGTTTCAA+GGG | + | chr8.3:36769332-36769351 | MS.gene71233:intron | 35.0% | |
| ATTTCACTGAGAAGGATCAT+CGG | - | chr8.3:36767507-36767526 | None:intergenic | 35.0% | |
| CAACTGCTCATAGTATTACA+AGG | - | chr8.3:36767732-36767751 | None:intergenic | 35.0% | |
| CAGAACTAACCATTAGAGAT+GGG | - | chr8.3:36767010-36767029 | None:intergenic | 35.0% | |
| CTCATACTTAAACTAACTGC+AGG | - | chr8.3:36767423-36767442 | None:intergenic | 35.0% | |
| GAAACAAATGTAGAGATTGG+AGG | + | chr8.3:36768998-36769017 | MS.gene71233:CDS | 35.0% | |
| GATAAGAAGAAAGTCCTTCT+TGG | + | chr8.3:36768498-36768517 | MS.gene71233:CDS | 35.0% | |
| GATTGTGAGATTGCACTTAT+AGG | + | chr8.3:36768117-36768136 | MS.gene71233:intron | 35.0% | |
| GCGGAGCAGAATATTAAAAT+TGG | + | chr8.3:36769386-36769405 | MS.gene71233:CDS | 35.0% | |
| GGAGAAACAAATGTAGAGAT+TGG | + | chr8.3:36768995-36769014 | MS.gene71233:CDS | 35.0% | |
| GTTTCATCATAAACCTGACA+TGG | - | chr8.3:36767912-36767931 | None:intergenic | 35.0% | |
| TCAATGCAGAGCCAATATTT+AGG | + | chr8.3:36768382-36768401 | MS.gene71233:intron | 35.0% | |
| TCACCTACTTTCTGGATATT+CGG | + | chr8.3:36768952-36768971 | MS.gene71233:CDS | 35.0% | |
| TCTAGCTATGTCATTGCTAA+TGG | - | chr8.3:36767934-36767953 | None:intergenic | 35.0% | |
| TTGGAGTTATTCCTTTGTAG+TGG | + | chr8.3:36766748-36766767 | MS.gene71233:intron | 35.0% | |
| TTTCAGACATAAGAGAGAAG+AGG | - | chr8.3:36767777-36767796 | None:intergenic | 35.0% | |
| ! | CTGCAGTTAGTTTAAGTATG+AGG | + | chr8.3:36767421-36767440 | MS.gene71233:intron | 35.0% |
| !! | TAGGGTGAAATGAAGCATTT+TGG | - | chr8.3:36766830-36766849 | None:intergenic | 35.0% |
| AAAAGGGAATGCTAGGCTTA+GGG | - | chr8.3:36766848-36766867 | None:intergenic | 40.0% | |
| AAGAAAGTCCTTCTTGGGAT+AGG | + | chr8.3:36768504-36768523 | MS.gene71233:CDS | 40.0% | |
| AAGAGAGAAGAGGTTTGCAA+TGG | - | chr8.3:36767767-36767786 | None:intergenic | 40.0% | |
| ACTAACTGCAGGATTTCAGA+AGG | - | chr8.3:36767412-36767431 | None:intergenic | 40.0% | |
| AGAAAAATGTTGACGAAGCG+TGG | + | chr8.3:36766907-36766926 | MS.gene71233:intron | 40.0% | |
| AGAGAGACTCTGAGTAGAAA+AGG | + | chr8.3:36766557-36766576 | MS.gene71233:CDS | 40.0% | |
| AGGAAAGATGATGTTTGGGT+TGG | + | chr8.3:36768929-36768948 | MS.gene71233:intron | 40.0% | |
| ATGTAGAGATTGGAGGAACT+TGG | + | chr8.3:36769005-36769024 | MS.gene71233:CDS | 40.0% | |
| ATTCCCTTTCCTTGAAGAAG+AGG | - | chr8.3:36767380-36767399 | None:intergenic | 40.0% | |
| CACCTTTATCTTCATTCCAG+TGG | - | chr8.3:36768691-36768710 | None:intergenic | 40.0% | |
| CACTGGAATGAAGATAAAGG+TGG | + | chr8.3:36768689-36768708 | MS.gene71233:intron | 40.0% | |
| CTCCACTGGAATGAAGATAA+AGG | + | chr8.3:36768686-36768705 | MS.gene71233:intron | 40.0% | |
| GAGAGACTCTGAGTAGAAAA+GGG | + | chr8.3:36766558-36766577 | MS.gene71233:CDS | 40.0% | |
| GAGCTTGATCATTACTCTCA+GGG | + | chr8.3:36766936-36766955 | MS.gene71233:intron | 40.0% | |
| GTCTATAAAAGCTGCATTCG+AGG | + | chr8.3:36769033-36769052 | MS.gene71233:CDS | 40.0% | |
| GTGCTTACAGTGAGACTATT+TGG | + | chr8.3:36768263-36768282 | MS.gene71233:intron | 40.0% | |
| GTTGTGAACTTGTGATTGAC+TGG | + | chr8.3:36768014-36768033 | MS.gene71233:intron | 40.0% | |
| TGAAGAATTGCTTCCTTGCT+AGG | + | chr8.3:36767683-36767702 | MS.gene71233:intron | 40.0% | |
| TGAGCTTGATCATTACTCTC+AGG | + | chr8.3:36766935-36766954 | MS.gene71233:intron | 40.0% | |
| TTAAGTATGAGGCTCACACT+CGG | + | chr8.3:36767432-36767451 | MS.gene71233:intron | 40.0% | |
| TTATTGCGCATCTTGACCAA+AGG | + | chr8.3:36769086-36769105 | MS.gene71233:CDS | 40.0% | |
| TTCCCTTTCCTTGAAGAAGA+GGG | - | chr8.3:36767379-36767398 | None:intergenic | 40.0% | |
| ! | AGATACTGATAATGCAGCCA+TGG | + | chr8.3:36767336-36767355 | MS.gene71233:CDS | 40.0% |
| ! | GCAGAGCCAATATTTAGGTT+TGG | + | chr8.3:36768387-36768406 | MS.gene71233:intron | 40.0% |
| ! | TCGGCTTGCATGAAAATTCA+GGG | - | chr8.3:36767488-36767507 | None:intergenic | 40.0% |
| ! | TCTCCTTTTGGATCTTCCAT+TGG | - | chr8.3:36768980-36768999 | None:intergenic | 40.0% |
| ! | TGTGGCTTTTGCTTCGAAAA+GGG | - | chr8.3:36766864-36766883 | None:intergenic | 40.0% |
| ! | TGTGGTGGTTTGTAACTCTT+TGG | + | chr8.3:36767054-36767073 | MS.gene71233:intron | 40.0% |
| ! | TTGTGGCTTTTGCTTCGAAA+AGG | - | chr8.3:36766865-36766884 | None:intergenic | 40.0% |
| ! | TTTTAATATTCTGCTCCGCG+AGG | - | chr8.3:36769385-36769404 | None:intergenic | 40.0% |
| !! | AATGTCCCTTTTGAGCATTG+AGG | + | chr8.3:36768296-36768315 | MS.gene71233:intron | 40.0% |
| !! | ACTAAATCTGCTTTTCCTGG+TGG | + | chr8.3:36769058-36769077 | MS.gene71233:CDS | 40.0% |
| !! | ATCGGCTTGCATGAAAATTC+AGG | - | chr8.3:36767489-36767508 | None:intergenic | 40.0% |
| !! | CTTCTTTGAGTATTGGGCTT+GGG | - | chr8.3:36766807-36766826 | None:intergenic | 40.0% |
| !! | GCAACTAAATCTGCTTTTCC+TGG | + | chr8.3:36769055-36769074 | MS.gene71233:CDS | 40.0% |
| AAAGTCCTTCTTGGGATAGG+CGG | + | chr8.3:36768507-36768526 | MS.gene71233:CDS | 45.0% | |
| AAATGTTGACGAAGCGTGGA+TGG | + | chr8.3:36766911-36766930 | MS.gene71233:intron | 45.0% | |
| AACACTACATCCATATGCCG+AGG | - | chr8.3:36768546-36768565 | None:intergenic | 45.0% | |
| ACACCTAGCCAGTACTAAGA+AGG | - | chr8.3:36767300-36767319 | None:intergenic | 45.0% | |
| ACATACAGAGTCACCTAGCA+AGG | - | chr8.3:36767699-36767718 | None:intergenic | 45.0% | |
| ACATGGGAGTTAAACTCCAC+TGG | + | chr8.3:36768672-36768691 | MS.gene71233:intron | 45.0% | |
| ACATTATGTGCCTCGGCATA+TGG | + | chr8.3:36768533-36768552 | MS.gene71233:CDS | 45.0% | |
| AGAAGGCCTCAATGCTCAAA+AGG | - | chr8.3:36768305-36768324 | None:intergenic | 45.0% | |
| ATTCCTTTGTAGTGGCTGCA+TGG | + | chr8.3:36766756-36766775 | MS.gene71233:intron | 45.0% | |
| ATTCTCACACTCTTCCTGCA+GGG | + | chr8.3:36768470-36768489 | MS.gene71233:intron | 45.0% | |
| CGGCTTGCATGAAAATTCAG+GGG | - | chr8.3:36767487-36767506 | None:intergenic | 45.0% | |
| CTCCCTCTTCTTCAAGGAAA+GGG | + | chr8.3:36767374-36767393 | MS.gene71233:CDS | 45.0% | |
| CTTCTTATCATTCTCCCTGC+AGG | - | chr8.3:36768487-36768506 | None:intergenic | 45.0% | |
| GAAAAGGGAATGCTAGGCTT+AGG | - | chr8.3:36766849-36766868 | None:intergenic | 45.0% | |
| GAAGGCCTCAATGCTCAAAA+GGG | - | chr8.3:36768304-36768323 | None:intergenic | 45.0% | |
| GCACCGAATATCCAGAAAGT+AGG | - | chr8.3:36768958-36768977 | None:intergenic | 45.0% | |
| GTAGCAGAAGCAGAAACAGA+AGG | - | chr8.3:36767593-36767612 | None:intergenic | 45.0% | |
| GTGCCAATGGAAGATCCAAA+AGG | + | chr8.3:36768974-36768993 | MS.gene71233:CDS | 45.0% | |
| TCTCCCTCTTCTTCAAGGAA+AGG | + | chr8.3:36767373-36767392 | MS.gene71233:CDS | 45.0% | |
| TCTCTTCTCCCTCTTCTTCA+AGG | + | chr8.3:36767368-36767387 | MS.gene71233:CDS | 45.0% | |
| TGCTTCGAAAAGGGAATGCT+AGG | - | chr8.3:36766855-36766874 | None:intergenic | 45.0% | |
| TGGTACTCTCCCATCTCTAA+TGG | + | chr8.3:36766998-36767017 | MS.gene71233:intron | 45.0% | |
| TTCCTTTGTAGTGGCTGCAT+GGG | + | chr8.3:36766757-36766776 | MS.gene71233:intron | 45.0% | |
| !! | AAGCCTTCTTAGTACTGGCT+AGG | + | chr8.3:36767294-36767313 | MS.gene71233:intron | 45.0% |
| !! | GCTTCTTTGAGTATTGGGCT+TGG | - | chr8.3:36766808-36766827 | None:intergenic | 45.0% |
| !! | TTCTGGATATTCGGTGCCAA+TGG | + | chr8.3:36768961-36768980 | MS.gene71233:CDS | 45.0% |
| !! | TATAAAAAAGAAAAATAAAA+CGG | - | chr8.3:36767869-36767888 | None:intergenic | 5.0% |
| !!! | TTTGATATATATATTTTTTT+GGG | + | chr8.3:36769235-36769254 | MS.gene71233:intron | 5.0% |
| AACCCATGCAGCCACTACAA+AGG | - | chr8.3:36766762-36766781 | None:intergenic | 50.0% | |
| AACTCCAAGGATCATGCTCC+CGG | - | chr8.3:36766736-36766755 | None:intergenic | 50.0% | |
| AGAAGAGAGAAGCCTCACCA+TGG | - | chr8.3:36767356-36767375 | None:intergenic | 50.0% | |
| GAGAGAAGAGTGGACGTCTT+AGG | + | chr8.3:36766655-36766674 | MS.gene71233:intron | 50.0% | |
| GAGTCTCTCTCTTTCCACCA+TGG | - | chr8.3:36766547-36766566 | None:intergenic | 50.0% | |
| GATTCTCACACTCTTCCTGC+AGG | + | chr8.3:36768469-36768488 | MS.gene71233:intron | 50.0% | |
| TGCGCAATAATTTCGCCACC+AGG | - | chr8.3:36769076-36769095 | None:intergenic | 50.0% | |
| TGGCAGAAGAATGCCATCAC+AGG | + | chr8.3:36769356-36769375 | MS.gene71233:CDS | 50.0% | |
| ! | CTGATAATGCAGCCATGGTG+AGG | + | chr8.3:36767341-36767360 | MS.gene71233:CDS | 50.0% |
| !! | TGGGTTGGTCACCTACTTTC+TGG | + | chr8.3:36768944-36768963 | MS.gene71233:CDS | 50.0% |
| ACTCCAAGGATCATGCTCCC+GGG | - | chr8.3:36766735-36766754 | None:intergenic | 55.0% | |
| ACTGCAGGAGTTTCAAGGGC+TGG | + | chr8.3:36769336-36769355 | MS.gene71233:intron | 55.0% | |
| AGGAGCCATTGTCTGATCCC+CGG | + | chr8.3:36766714-36766733 | MS.gene71233:intron | 55.0% | |
| GCGGTGGACATTATGTGCCT+CGG | + | chr8.3:36768526-36768545 | MS.gene71233:CDS | 55.0% | |
| GTATGAGGCTCACACTCGGA+AGG | + | chr8.3:36767436-36767455 | MS.gene71233:intron | 55.0% | |
| TGCCATCACAGGATTCCTCG+CGG | + | chr8.3:36769367-36769386 | MS.gene71233:CDS | 55.0% | |
| CTCCAAGGATCATGCTCCCG+GGG | - | chr8.3:36766734-36766753 | None:intergenic | 60.0% | |
| CTCCGCGAGGAATCCTGTGA+TGG | - | chr8.3:36769372-36769391 | None:intergenic | 60.0% | |
| GCTCTCTTCACACGTGCGCA+CGG | + | chr8.3:36767537-36767556 | MS.gene71233:intron | 60.0% | |
| GGAGCCATTGTCTGATCCCC+GGG | + | chr8.3:36766715-36766734 | MS.gene71233:intron | 60.0% | |
| GTCCACCGCCTATCCCAAGA+AGG | - | chr8.3:36768515-36768534 | None:intergenic | 60.0% | |
| GTCCTTCTTGGGATAGGCGG+TGG | + | chr8.3:36768510-36768529 | MS.gene71233:CDS | 60.0% | |
| TGCTCCCGGGGATCAGACAA+TGG | - | chr8.3:36766722-36766741 | None:intergenic | 60.0% | |
| ! | ATCCCCGGGAGCATGATCCT+TGG | + | chr8.3:36766729-36766748 | MS.gene71233:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 36766536 | 36769430 | 36766536 | ID=MS.gene71233 |
| chr8.3 | mRNA | 36766536 | 36769430 | 36766536 | ID=MS.gene71233.t1;Parent=MS.gene71233 |
| chr8.3 | exon | 36766536 | 36766610 | 36766536 | ID=MS.gene71233.t1.exon1;Parent=MS.gene71233.t1 |
| chr8.3 | CDS | 36766536 | 36766610 | 36766536 | ID=cds.MS.gene71233.t1;Parent=MS.gene71233.t1 |
| chr8.3 | exon | 36767316 | 36767425 | 36767316 | ID=MS.gene71233.t1.exon2;Parent=MS.gene71233.t1 |
| chr8.3 | CDS | 36767316 | 36767425 | 36767316 | ID=cds.MS.gene71233.t1;Parent=MS.gene71233.t1 |
| chr8.3 | exon | 36768491 | 36768565 | 36768491 | ID=MS.gene71233.t1.exon3;Parent=MS.gene71233.t1 |
| chr8.3 | CDS | 36768491 | 36768565 | 36768491 | ID=cds.MS.gene71233.t1;Parent=MS.gene71233.t1 |
| chr8.3 | exon | 36768931 | 36769107 | 36768931 | ID=MS.gene71233.t1.exon4;Parent=MS.gene71233.t1 |
| chr8.3 | CDS | 36768931 | 36769107 | 36768931 | ID=cds.MS.gene71233.t1;Parent=MS.gene71233.t1 |
| chr8.3 | exon | 36769343 | 36769430 | 36769343 | ID=MS.gene71233.t1.exon5;Parent=MS.gene71233.t1 |
| chr8.3 | CDS | 36769343 | 36769430 | 36769343 | ID=cds.MS.gene71233.t1;Parent=MS.gene71233.t1 |
| Gene Sequence |
| Protein sequence |
