AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71318

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71318.t1 MTR_2g078530 82.232 681 31 8 8 608 39 709 0.0 1030
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71318.t1 AT3G15095 52.532 158 56 6 451 594 242 394 2.42e-35 138
MS.gene71318.t1 AT3G15095 52.532 158 56 6 451 594 388 540 5.45e-35 139
MS.gene71318.t1 AT3G15095 52.532 158 56 6 451 594 520 672 1.02e-34 140

Find 136 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCGGAGGCTTCTTGTTTC+TGG 0.019685 2.1:-21998009 MS.gene71318:CDS
TGATGGGTTTCTTCTATTTC+TGG 0.055638 2.1:+21998652 None:intergenic
TTTCTTCATCTTCTCTTTGA+TGG 0.211373 2.1:+21998635 None:intergenic
TTTGATGATGTTCTTCAATT+TGG 0.233136 2.1:+21999064 None:intergenic
GAGGATGCGGTTCAAGTTTC+CGG 0.253854 2.1:+21997981 None:intergenic
TAGATCTGATCCTGTTAAAA+TGG 0.314155 2.1:-21999136 MS.gene71318:CDS
ATTAACAAAAGAGCATTCTT+TGG 0.324561 2.1:+21999165 None:intergenic
GCTCTTTAATCTTCTGCTTA+AGG 0.334978 2.1:+21999932 None:intergenic
TGTCCAATGCAAGTTACTTT+TGG 0.336613 2.1:+21999816 None:intergenic
GAAACTTCCATTGAAAGCTT+TGG 0.338002 2.1:+21998349 None:intergenic
TCAAGTACTCGACCCGGAAA+TGG 0.349198 2.1:-21998467 MS.gene71318:CDS
TTCTTCATCTTCTCTTTGAT+GGG 0.352194 2.1:+21998636 None:intergenic
GACCCGACAAGACCCATTTC+CGG 0.352963 2.1:+21998454 None:intergenic
TCCTGTTAAAATGGCTGCTT+TGG 0.359824 2.1:-21999127 MS.gene71318:CDS
ACCCGACAAGACCCATTTCC+GGG 0.363469 2.1:+21998455 None:intergenic
TGAAGATCTTGATATTGATT+TGG 0.363834 2.1:-21999268 MS.gene71318:CDS
GGGTCAGCAGAGCGAGGATA+TGG 0.365340 2.1:-21998436 MS.gene71318:CDS
CTATTCTGTCTAGTTAGATC+TGG 0.375754 2.1:+21999696 None:intergenic
CTTCTTGTTTCTGGAATAAC+CGG 0.377554 2.1:-21998000 MS.gene71318:CDS
ACCCGCCGGAGTGGAGAAAA+AGG 0.381425 2.1:-21998263 MS.gene71318:CDS
GAGGAAAAGAGTAGCTTAGA+AGG 0.383005 2.1:-21999513 MS.gene71318:CDS
GTCGGAGCTCCGGCTGGCGT+TGG 0.385599 2.1:-21997941 MS.gene71318:CDS
TGATTTCATACGGTGGTTAC+CGG 0.390540 2.1:-21998302 MS.gene71318:CDS
TTTCCGGGTCGAGTACTTGA+TGG 0.391723 2.1:+21998470 None:intergenic
GAAAAGATACAAGAAGAGTT+TGG 0.392635 2.1:-21999240 MS.gene71318:CDS
GACCGGTGCCGGAATGTCTA+TGG 0.394618 2.1:-21998143 MS.gene71318:CDS
GAGATCTTCATGTTGTTTGC+CGG 0.404192 2.1:-21998167 MS.gene71318:CDS
GCTCCGACTCCAAGCGTTGC+CGG 0.405038 2.1:+21997956 None:intergenic
CATAGTCGCCATAGACATTC+CGG 0.407449 2.1:+21998135 None:intergenic
GCAGGCTTCACCTTAACTTT+CGG 0.408009 2.1:+21998214 None:intergenic
TCGGAGCTCCGGCTGGCGTT+GGG 0.408856 2.1:-21997940 MS.gene71318:CDS
TGCATCAACGGCGGATGAGC+AGG 0.411748 2.1:+21998196 None:intergenic
CATCCTCCTCCGGCAACGCT+TGG 0.424124 2.1:-21997965 MS.gene71318:CDS
TTACAGCGCGTGAGAACAAA+TGG 0.424413 2.1:+21998064 None:intergenic
GAGAGAGATTGAAGTGATGA+TGG 0.428179 2.1:-21999388 MS.gene71318:CDS
ATCATCAATAACAAACATTC+TGG 0.431143 2.1:+21998379 None:intergenic
GTTGTTCAAAATCTCGTAAT+GGG 0.435963 2.1:-21998093 MS.gene71318:CDS
CAATGAACAAAGCATTGAAA+TGG 0.437116 2.1:-21998941 MS.gene71318:CDS
GACCCGGAAATGGGTCTTGT+CGG 0.446254 2.1:-21998457 MS.gene71318:CDS
CAAGAACAAGAGGAGGATAG+TGG 0.456344 2.1:-21999021 MS.gene71318:CDS
CCCTAAAACCCAACGCCAGC+CGG 0.464031 2.1:+21997932 None:intergenic
GGTTGGTCTCTGCTACGGCT+AGG 0.467390 2.1:+21999975 None:intergenic
CAAGTACTCGACCCGGAAAT+GGG 0.470443 2.1:-21998466 MS.gene71318:CDS
CTTGGAGTCGGAGCTCCGGC+TGG 0.470927 2.1:-21997947 MS.gene71318:CDS
TCATGTTGTTTGCCGGTGAC+CGG 0.470939 2.1:-21998160 MS.gene71318:CDS
TGCATTTGCAAGATGGTTGG+TGG 0.472132 2.1:-21999436 MS.gene71318:CDS
GCTTCACCAATGTTTCCAAC+AGG 0.474788 2.1:-21999885 MS.gene71318:CDS
TGTTCTCACGCGCTGTAAGT+CGG 0.481920 2.1:-21998059 MS.gene71318:CDS
AACAAGAGTGTTTGAAACAT+AGG 0.481996 2.1:-21999641 MS.gene71318:CDS
GACATTCCGGCACCGGTCAC+CGG 0.482056 2.1:+21998148 None:intergenic
TGAAACATAGGAATCAAAGA+TGG 0.482415 2.1:-21999629 MS.gene71318:CDS
ACTCCAAGCGTTGCCGGAGG+AGG 0.482424 2.1:+21997962 None:intergenic
GGGTCGAGTACTTGATGGAT+TGG 0.482624 2.1:+21998475 None:intergenic
AGCGTTGCCGGAGGAGGATG+CGG 0.485071 2.1:+21997968 None:intergenic
ATCTACAAAACCGAAAGTTA+AGG 0.490083 2.1:-21998224 MS.gene71318:CDS
TCACCAAAAGTAACTTGCAT+TGG 0.492535 2.1:-21999819 MS.gene71318:CDS
AGAAGAGGAGTAAGATCTAG+TGG 0.493585 2.1:-21999489 MS.gene71318:CDS
ACCCGGAAATGGGTCTTGTC+GGG 0.493633 2.1:-21998456 MS.gene71318:CDS
TGTTTGCCGGTGACCGGTGC+CGG 0.496747 2.1:-21998154 MS.gene71318:CDS
AACAAAAGAGCATTCTTTGG+TGG 0.497686 2.1:+21999168 None:intergenic
TATCAAGATGGAGATGGAAA+AGG 0.498519 2.1:-21999411 MS.gene71318:CDS
CGCCATAGACATTCCGGCAC+CGG 0.499830 2.1:+21998141 None:intergenic
GGTTGTTCAAAATCTCGTAA+TGG 0.499945 2.1:-21998094 MS.gene71318:CDS
TTTCCACCTGTTGGAAACAT+TGG 0.500086 2.1:+21999879 None:intergenic
GCTTTCAATGGAAGTTTCAA+AGG 0.505440 2.1:-21998344 MS.gene71318:CDS
GTAGAAGAAGATGAAGAGAA+AGG 0.509757 2.1:-21999210 MS.gene71318:CDS
GATCTCGGCGGCTGCATCAA+CGG 0.511129 2.1:+21998184 None:intergenic
GTTGGTCTCTGCTACGGCTA+GGG 0.512219 2.1:+21999976 None:intergenic
ACTTGAACCGCATCCTCCTC+CGG 0.514734 2.1:-21997975 MS.gene71318:CDS
AGTAGCTTAGAAGGAAGAAG+AGG 0.516596 2.1:-21999504 MS.gene71318:CDS
ATCAAGATGGAGATGGAAAA+GGG 0.516935 2.1:-21999410 MS.gene71318:CDS
GTCGGCGACGAAGCTTGCTC+CGG 0.521347 2.1:-21998026 MS.gene71318:CDS
GAAGAGAGAAAGGTGGTGAG+AGG 0.522506 2.1:-21999317 MS.gene71318:CDS
TGATGAGATGGAGATGGTAA+TGG 0.525546 2.1:-21999358 MS.gene71318:CDS
GTGAGAGGAGTTATAGTCAA+AGG 0.525983 2.1:-21999302 MS.gene71318:CDS
AACGCTTGGAGTCGGAGCTC+CGG 0.528527 2.1:-21997951 MS.gene71318:CDS
CCTCCGGCAACGCTTGGAGT+CGG 0.534842 2.1:-21997959 MS.gene71318:CDS
GGCGACGAAGCTTGCTCCGG+AGG 0.536634 2.1:-21998023 MS.gene71318:CDS
GATGATGGTGGAAGAGAGAA+AGG 0.538517 2.1:-21999327 MS.gene71318:CDS
GAAACATAGGAATCAAAGAT+GGG 0.541335 2.1:-21999628 MS.gene71318:CDS
AGCTGCATTTGCAAGATGGT+TGG 0.541489 2.1:-21999439 MS.gene71318:CDS
TGGAAGTTTCAAAGGAAACA+TGG 0.542217 2.1:-21998336 MS.gene71318:CDS
AAGAGCAACGGTAGCATGAA+AGG 0.542510 2.1:-21999915 MS.gene71318:CDS
TGGTCTTGTTCTTTGTGAAG+TGG 0.545356 2.1:+21999084 None:intergenic
TATGATTGAGCAGAAGTTGG+TGG 0.546810 2.1:-21998116 MS.gene71318:CDS
AGCAGAAGATTAAAGAGCAA+CGG 0.550190 2.1:-21999927 MS.gene71318:CDS
AGCTTCGTCGCCGACCTCAT+CGG 0.551329 2.1:+21998034 None:intergenic
GTCAAATGAAAGAGACAAAG+AGG 0.552831 2.1:-21999532 MS.gene71318:CDS
CACCGGAAAACCCGCCGGAG+TGG 0.554008 2.1:-21998272 MS.gene71318:CDS
TGTAGATGTTGAACATGAAG+AGG 0.558437 2.1:-21998989 MS.gene71318:CDS
GTGGAGCTGCATTTGCAAGA+TGG 0.558468 2.1:-21999443 MS.gene71318:CDS
AAAGCTTCACATATTGTCAA+AGG 0.559019 2.1:+21999597 None:intergenic
AGAAACAAGGGAAGAAAATG+AGG 0.559094 2.1:-21999776 MS.gene71318:CDS
CCAACAGGTGGAAAGAAAAG+AGG 0.559340 2.1:-21999870 MS.gene71318:CDS
TCACCAATGTTTCCAACAGG+TGG 0.562306 2.1:-21999882 MS.gene71318:CDS
GTGTGAGCCAAAGCTTTCAA+TGG 0.563872 2.1:-21998356 MS.gene71318:CDS
GGCAAACAACATGAAGATCT+CGG 0.567033 2.1:+21998169 None:intergenic
TGGTTGGTGGCTTATCAAGA+TGG 0.567695 2.1:-21999423 MS.gene71318:CDS
TCTGTGGTTGGTCTCTGCTA+CGG 0.568162 2.1:+21999970 None:intergenic
GGTGGAAAGAAAAGAGGGTG+TGG 0.572456 2.1:-21999864 MS.gene71318:CDS
TTCCAGAAACAAGAAGCCTC+CGG 0.575555 2.1:+21998007 None:intergenic
AGTGGTGAACATAGTAGAGA+AGG 0.583728 2.1:-21999471 MS.gene71318:CDS
TGGTTACCGGAGAGACCCAC+CGG 0.587320 2.1:-21998289 MS.gene71318:CDS
CAACAGGTGGAAAGAAAAGA+GGG 0.587348 2.1:-21999869 MS.gene71318:CDS
AGGTCAAGATCAAAGAGAAG+AGG 0.587901 2.1:-21999756 MS.gene71318:CDS
AGAACAAGAACAAGAACAAG+AGG 0.588184 2.1:-21999031 MS.gene71318:CDS
GTGGCTTATCAAGATGGAGA+TGG 0.589401 2.1:-21999417 MS.gene71318:CDS
GACTATGATTGAGCAGAAGT+TGG 0.591224 2.1:-21998119 MS.gene71318:CDS
GGAGATGGTAATGGATGATG+AGG 0.591682 2.1:-21999349 MS.gene71318:CDS
CATAGTAGAGAAGGTTCATG+TGG 0.596995 2.1:-21999462 MS.gene71318:CDS
GATGGAGCATCATGATGAGA+TGG 0.607946 2.1:-21999370 MS.gene71318:CDS
TATGCAGCACTGATTTCATA+CGG 0.610683 2.1:-21998312 MS.gene71318:CDS
ATGGATGATGAGGATGATGG+TGG 0.611699 2.1:-21999339 MS.gene71318:CDS
GGAAGTTTCAAAGGAAACAT+GGG 0.611713 2.1:-21998335 MS.gene71318:CDS
GAGTGAAGACAAAGAAACAA+GGG 0.612252 2.1:-21999788 MS.gene71318:CDS
AGACCCACCGGAAAACCCGC+CGG 0.612268 2.1:-21998277 MS.gene71318:CDS
AAGATACAAGAAGAGTTTGG+TGG 0.616336 2.1:-21999237 MS.gene71318:CDS
ACAAGAACAAGAACAAGAGG+AGG 0.619092 2.1:-21999028 MS.gene71318:CDS
TAAGTCGGAGCCGATGAGGT+CGG 0.620166 2.1:-21998044 MS.gene71318:CDS
AGAGTGAAGACAAAGAAACA+AGG 0.623325 2.1:-21999789 MS.gene71318:CDS
ATGATTGAGCAGAAGTTGGT+GGG 0.633317 2.1:-21998115 MS.gene71318:CDS
GACATACAAGAAGACCTACA+AGG 0.637773 2.1:+21999552 None:intergenic
CTCGGCGGCTGCATCAACGG+CGG 0.646549 2.1:+21998187 None:intergenic
GTAATGGATGATGAGGATGA+TGG 0.654575 2.1:-21999342 MS.gene71318:CDS
ATGAGAGTGATATCTGTGGT+TGG 0.654954 2.1:+21999958 None:intergenic
AATCCATCAAGTACTCGACC+CGG 0.659870 2.1:-21998473 MS.gene71318:CDS
GCATCATGATGAGATGGAGA+TGG 0.661675 2.1:-21999364 MS.gene71318:CDS
GAGGAACAAGTAGAAGAACA+AGG 0.666204 2.1:-21998970 MS.gene71318:CDS
CCGACTCCAAGCGTTGCCGG+AGG 0.666430 2.1:+21997959 None:intergenic
GATGGTGGAAGAGAGAAAGG+TGG 0.679136 2.1:-21999324 MS.gene71318:CDS
GCTGTAAGTCGGAGCCGATG+AGG 0.689893 2.1:-21998048 MS.gene71318:CDS
AGCAACGGTAGCATGAAAGG+TGG 0.689985 2.1:-21999912 MS.gene71318:CDS
CTTGTCGGGTCAGCAGAGCG+AGG 0.695771 2.1:-21998442 MS.gene71318:CDS
GCAGCACTGATTTCATACGG+TGG 0.747087 2.1:-21998309 MS.gene71318:CDS
GAAGATGAGAGTGATATCTG+TGG 0.766075 2.1:+21999954 None:intergenic
AAACAACATGAAGATCTCGG+CGG 0.798508 2.1:+21998172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATCATCAATAACAAACATTC+TGG + chr2.1:21999563-21999582 None:intergenic 25.0%
! TTCAACTTTATCATCATCAA+TGG + chr2.1:21999219-21999238 None:intergenic 25.0%
!! TGAAGATCTTGATATTGATT+TGG - chr2.1:21998671-21998690 MS.gene71318:CDS 25.0%
!!! ATTAACAAAAGAGCATTCTT+TGG + chr2.1:21998777-21998796 None:intergenic 25.0%
!!! TTTGATGATGTTCTTCAATT+TGG + chr2.1:21998878-21998897 None:intergenic 25.0%
AAAGCTTCACATATTGTCAA+AGG + chr2.1:21998345-21998364 None:intergenic 30.0%
AAGAAGCTATGAAAGTTTCA+GGG + chr2.1:21999373-21999392 None:intergenic 30.0%
AGAAGAAAAAGTTTCAACAG+AGG - chr2.1:21999433-21999452 MS.gene71318:CDS 30.0%
AGTGAATCAACTAAAACACA+TGG + chr2.1:21999248-21999267 None:intergenic 30.0%
ATCAACTAAAACACATGGAA+AGG + chr2.1:21999243-21999262 None:intergenic 30.0%
ATCTACAAAACCGAAAGTTA+AGG - chr2.1:21999715-21999734 MS.gene71318:CDS 30.0%
GAAAAGATACAAGAAGAGTT+TGG - chr2.1:21998699-21998718 MS.gene71318:intron 30.0%
GAAACATAGGAATCAAAGAT+GGG - chr2.1:21998311-21998330 MS.gene71318:CDS 30.0%
GATGAAGATGAAAATGAAGT+TGG - chr2.1:21999182-21999201 MS.gene71318:CDS 30.0%
GTTGTTCAAAATCTCGTAAT+GGG - chr2.1:21999846-21999865 MS.gene71318:CDS 30.0%
TAGATCTGATCCTGTTAAAA+TGG - chr2.1:21998803-21998822 MS.gene71318:intron 30.0%
TGAAACATAGGAATCAAAGA+TGG - chr2.1:21998310-21998329 MS.gene71318:CDS 30.0%
TTCTTCATCTTCTCTTTGAT+GGG + chr2.1:21999306-21999325 None:intergenic 30.0%
TTTCTTCATCTTCTCTTTGA+TGG + chr2.1:21999307-21999326 None:intergenic 30.0%
! AGAATGCTCTTTTGTTAATG+AGG - chr2.1:21998778-21998797 MS.gene71318:intron 30.0%
! TTTTGTAGATGATGATTCCA+CGG + chr2.1:21999705-21999724 None:intergenic 30.0%
!! AACAAGAGTGTTTGAAACAT+AGG - chr2.1:21998298-21998317 MS.gene71318:CDS 30.0%
!! CAATGAACAAAGCATTGAAA+TGG - chr2.1:21998998-21999017 MS.gene71318:CDS 30.0%
!! GATGAAAATGAAGTTGGTAA+TGG - chr2.1:21999188-21999207 MS.gene71318:CDS 30.0%
!!! TTAGTTGCTTTTTTCCTTGT+AGG - chr2.1:21998373-21998392 MS.gene71318:CDS 30.0%
AAGATACAAGAAGAGTTTGG+TGG - chr2.1:21998702-21998721 MS.gene71318:intron 35.0%
AGAAACAAGGGAAGAAAATG+AGG - chr2.1:21998163-21998182 MS.gene71318:CDS 35.0%
AGAACAAGAACAAGAACAAG+AGG - chr2.1:21998908-21998927 MS.gene71318:CDS 35.0%
AGAAGCTATGAAAGTTTCAG+GGG + chr2.1:21999372-21999391 None:intergenic 35.0%
AGAGTGAAGACAAAGAAACA+AGG - chr2.1:21998150-21998169 MS.gene71318:CDS 35.0%
AGCAGAAGATTAAAGAGCAA+CGG - chr2.1:21998012-21998031 MS.gene71318:CDS 35.0%
ATCAAGATGGAGATGGAAAA+GGG - chr2.1:21998529-21998548 MS.gene71318:intron 35.0%
ATCTTTCTCTTCCTCTTCAT+TGG + chr2.1:21999165-21999184 None:intergenic 35.0%
CTATTCTGTCTAGTTAGATC+TGG + chr2.1:21998246-21998265 None:intergenic 35.0%
GAAACTTCCATTGAAAGCTT+TGG + chr2.1:21999593-21999612 None:intergenic 35.0%
GAAGAAGCTATGAAAGTTTC+AGG + chr2.1:21999374-21999393 None:intergenic 35.0%
GAGTGAAGACAAAGAAACAA+GGG - chr2.1:21998151-21998170 MS.gene71318:CDS 35.0%
GCTCTTTAATCTTCTGCTTA+AGG + chr2.1:21998010-21998029 None:intergenic 35.0%
GCTTTCAATGGAAGTTTCAA+AGG - chr2.1:21999595-21999614 MS.gene71318:CDS 35.0%
GGAAGTTTCAAAGGAAACAT+GGG - chr2.1:21999604-21999623 MS.gene71318:CDS 35.0%
GGTTGTTCAAAATCTCGTAA+TGG - chr2.1:21999845-21999864 MS.gene71318:CDS 35.0%
GTAGAAGAAGATGAAGAGAA+AGG - chr2.1:21998729-21998748 MS.gene71318:intron 35.0%
GTCAAATGAAAGAGACAAAG+AGG - chr2.1:21998407-21998426 MS.gene71318:CDS 35.0%
TATCAAGATGGAGATGGAAA+AGG - chr2.1:21998528-21998547 MS.gene71318:intron 35.0%
TGGAAGTTTCAAAGGAAACA+TGG - chr2.1:21999603-21999622 MS.gene71318:CDS 35.0%
TGTAGATGTTGAACATGAAG+AGG - chr2.1:21998950-21998969 MS.gene71318:CDS 35.0%
! TCACCAAAAGTAACTTGCAT+TGG - chr2.1:21998120-21998139 MS.gene71318:CDS 35.0%
!! AACAAAAGAGCATTCTTTGG+TGG + chr2.1:21998774-21998793 None:intergenic 35.0%
!! CTTCTTGTTTCTGGAATAAC+CGG - chr2.1:21999939-21999958 MS.gene71318:CDS 35.0%
!! TATGCAGCACTGATTTCATA+CGG - chr2.1:21999627-21999646 MS.gene71318:CDS 35.0%
!! TGATGGGTTTCTTCTATTTC+TGG + chr2.1:21999290-21999309 None:intergenic 35.0%
!! TGTCCAATGCAAGTTACTTT+TGG + chr2.1:21998126-21998145 None:intergenic 35.0%
!!! CAAGTTACTTTTGGTGATGA+AGG + chr2.1:21998117-21998136 None:intergenic 35.0%
AAACAACATGAAGATCTCGG+CGG + chr2.1:21999770-21999789 None:intergenic 40.0%
AAGTGAAACACAAGCTAGTG+AGG - chr2.1:21999091-21999110 MS.gene71318:CDS 40.0%
ACAAGAACAAGAACAAGAGG+AGG - chr2.1:21998911-21998930 MS.gene71318:CDS 40.0%
AGAAGAGGAGTAAGATCTAG+TGG - chr2.1:21998450-21998469 MS.gene71318:CDS 40.0%
AGGTCAAGATCAAAGAGAAG+AGG - chr2.1:21998183-21998202 MS.gene71318:CDS 40.0%
AGTAGCTTAGAAGGAAGAAG+AGG - chr2.1:21998435-21998454 MS.gene71318:CDS 40.0%
AGTGGTGAACATAGTAGAGA+AGG - chr2.1:21998468-21998487 MS.gene71318:CDS 40.0%
ATGAGAGTGATATCTGTGGT+TGG + chr2.1:21997984-21998003 None:intergenic 40.0%
CAACAGGTGGAAAGAAAAGA+GGG - chr2.1:21998070-21998089 MS.gene71318:CDS 40.0%
CATAGTAGAGAAGGTTCATG+TGG - chr2.1:21998477-21998496 MS.gene71318:CDS 40.0%
GAAGATGAGAGTGATATCTG+TGG + chr2.1:21997988-21998007 None:intergenic 40.0%
GAAGTGGTGATTCCCAAAAA+CGG + chr2.1:21998842-21998861 None:intergenic 40.0%
GACATACAAGAAGACCTACA+AGG + chr2.1:21998390-21998409 None:intergenic 40.0%
GACTATGATTGAGCAGAAGT+TGG - chr2.1:21999820-21999839 MS.gene71318:CDS 40.0%
GAGAGAGATTGAAGTGATGA+TGG - chr2.1:21998551-21998570 MS.gene71318:intron 40.0%
GAGGAAAAGAGTAGCTTAGA+AGG - chr2.1:21998426-21998445 MS.gene71318:CDS 40.0%
GAGGAACAAGTAGAAGAACA+AGG - chr2.1:21998969-21998988 MS.gene71318:CDS 40.0%
GGCAAACAACATGAAGATCT+CGG + chr2.1:21999773-21999792 None:intergenic 40.0%
GTGAGAGGAGTTATAGTCAA+AGG - chr2.1:21998637-21998656 MS.gene71318:CDS 40.0%
TATGATTGAGCAGAAGTTGG+TGG - chr2.1:21999823-21999842 MS.gene71318:CDS 40.0%
TCCTGTTAAAATGGCTGCTT+TGG - chr2.1:21998812-21998831 MS.gene71318:intron 40.0%
TGATGAAGTAGCCAATGAAG+AGG - chr2.1:21999151-21999170 MS.gene71318:CDS 40.0%
TGATGAGATGGAGATGGTAA+TGG - chr2.1:21998581-21998600 MS.gene71318:intron 40.0%
TGATTTCATACGGTGGTTAC+CGG - chr2.1:21999637-21999656 MS.gene71318:CDS 40.0%
TGGCTACTTCATCAACTTCT+TGG + chr2.1:21999145-21999164 None:intergenic 40.0%
TTTCCACCTGTTGGAAACAT+TGG + chr2.1:21998063-21998082 None:intergenic 40.0%
! ATGATTGAGCAGAAGTTGGT+GGG - chr2.1:21999824-21999843 MS.gene71318:CDS 40.0%
! GAGATCTTCATGTTGTTTGC+CGG - chr2.1:21999772-21999791 MS.gene71318:CDS 40.0%
!! GTAATGGATGATGAGGATGA+TGG - chr2.1:21998597-21998616 MS.gene71318:intron 40.0%
!! TGCTTTGGCTAACCGTTTTT+GGG - chr2.1:21998827-21998846 MS.gene71318:intron 40.0%
!! TGGTCTTGTTCTTTGTGAAG+TGG + chr2.1:21998858-21998877 None:intergenic 40.0%
!!! AGTTTTAGAAGAGGTGGTGA+AGG - chr2.1:21998213-21998232 MS.gene71318:CDS 40.0%
!!! GAAGCTAGTTTTAGAAGAGG+TGG - chr2.1:21998207-21998226 MS.gene71318:CDS 40.0%
!!! GGTGAAGCTAGTTTTAGAAG+AGG - chr2.1:21998204-21998223 MS.gene71318:CDS 40.0%
!!! GTTTTAGAAGAGGTGGTGAA+GGG - chr2.1:21998214-21998233 MS.gene71318:CDS 40.0%
AAGAGCAACGGTAGCATGAA+AGG - chr2.1:21998024-21998043 MS.gene71318:CDS 45.0%
AATCCATCAAGTACTCGACC+CGG - chr2.1:21999466-21999485 MS.gene71318:CDS 45.0%
AGCTGCATTTGCAAGATGGT+TGG - chr2.1:21998500-21998519 MS.gene71318:intron 45.0%
CAAGAACAAGAGGAGGATAG+TGG - chr2.1:21998918-21998937 MS.gene71318:CDS 45.0%
CATAGTCGCCATAGACATTC+CGG + chr2.1:21999807-21999826 None:intergenic 45.0%
CCAACAGGTGGAAAGAAAAG+AGG - chr2.1:21998069-21998088 MS.gene71318:CDS 45.0%
GAAAGTTTCAGGGGAAGAAG+AGG + chr2.1:21999363-21999382 None:intergenic 45.0%
GCAGGCTTCACCTTAACTTT+CGG + chr2.1:21999728-21999747 None:intergenic 45.0%
GCATCATGATGAGATGGAGA+TGG - chr2.1:21998575-21998594 MS.gene71318:intron 45.0%
GCTTCACCAATGTTTCCAAC+AGG - chr2.1:21998054-21998073 MS.gene71318:CDS 45.0%
GTGGCTTATCAAGATGGAGA+TGG - chr2.1:21998522-21998541 MS.gene71318:intron 45.0%
GTGTGAGCCAAAGCTTTCAA+TGG - chr2.1:21999583-21999602 MS.gene71318:CDS 45.0%
TCACCAATGTTTCCAACAGG+TGG - chr2.1:21998057-21998076 MS.gene71318:CDS 45.0%
TGCATTTGCAAGATGGTTGG+TGG - chr2.1:21998503-21998522 MS.gene71318:intron 45.0%
TTACAGCGCGTGAGAACAAA+TGG + chr2.1:21999878-21999897 None:intergenic 45.0%
TTCCAGAAACAAGAAGCCTC+CGG + chr2.1:21999935-21999954 None:intergenic 45.0%
! ATGGATGATGAGGATGATGG+TGG - chr2.1:21998600-21998619 MS.gene71318:intron 45.0%
! CCTCTTTTCTTTCCACCTGT+TGG + chr2.1:21998072-21998091 None:intergenic 45.0%
! CTGCTTTGGCTAACCGTTTT+TGG - chr2.1:21998826-21998845 MS.gene71318:intron 45.0%
! GATGGAGCATCATGATGAGA+TGG - chr2.1:21998569-21998588 MS.gene71318:intron 45.0%
!! GATGATGGTGGAAGAGAGAA+AGG - chr2.1:21998612-21998631 MS.gene71318:intron 45.0%
!! GCCAAAGCAGCCATTTTAAC+AGG + chr2.1:21998816-21998835 None:intergenic 45.0%
!! GGAGATGGTAATGGATGATG+AGG - chr2.1:21998590-21998609 MS.gene71318:intron 45.0%
!! TGGTTGGTGGCTTATCAAGA+TGG - chr2.1:21998516-21998535 MS.gene71318:intron 45.0%
!!! ACTTTTGGTGATGAAGGCTC+TGG + chr2.1:21998111-21998130 None:intergenic 45.0%
AGCAACGGTAGCATGAAAGG+TGG - chr2.1:21998027-21998046 MS.gene71318:CDS 50.0%
AGTGGAGAAAAAGGTCACCG+TGG - chr2.1:21999685-21999704 MS.gene71318:CDS 50.0%
CAAGTACTCGACCCGGAAAT+GGG - chr2.1:21999473-21999492 MS.gene71318:CDS 50.0%
GAAGAGAGAAAGGTGGTGAG+AGG - chr2.1:21998622-21998641 MS.gene71318:intron 50.0%
GGTGGAAAGAAAAGAGGGTG+TGG - chr2.1:21998075-21998094 MS.gene71318:CDS 50.0%
GTGGAGCTGCATTTGCAAGA+TGG - chr2.1:21998496-21998515 MS.gene71318:intron 50.0%
TCAAGTACTCGACCCGGAAA+TGG - chr2.1:21999472-21999491 MS.gene71318:CDS 50.0%
TGTTCTCACGCGCTGTAAGT+CGG - chr2.1:21999880-21999899 MS.gene71318:CDS 50.0%
TTTCCGGGTCGAGTACTTGA+TGG + chr2.1:21999472-21999491 None:intergenic 50.0%
! GAGGATGCGGTTCAAGTTTC+CGG + chr2.1:21999961-21999980 None:intergenic 50.0%
! GGGTCGAGTACTTGATGGAT+TGG + chr2.1:21999467-21999486 None:intergenic 50.0%
! GGTGACCTTTTTCTCCACTC+CGG + chr2.1:21999684-21999703 None:intergenic 50.0%
! TCATGTTGTTTGCCGGTGAC+CGG - chr2.1:21999779-21999798 MS.gene71318:CDS 50.0%
!! GATGGTGGAAGAGAGAAAGG+TGG - chr2.1:21998615-21998634 MS.gene71318:intron 50.0%
!! GCAGCACTGATTTCATACGG+TGG - chr2.1:21999630-21999649 MS.gene71318:CDS 50.0%
!! TCTGTGGTTGGTCTCTGCTA+CGG + chr2.1:21997972-21997991 None:intergenic 50.0%
ACCCGACAAGACCCATTTCC+GGG + chr2.1:21999487-21999506 None:intergenic 55.0%
ACTTGAACCGCATCCTCCTC+CGG - chr2.1:21999964-21999983 MS.gene71318:CDS 55.0%
GACCCGACAAGACCCATTTC+CGG + chr2.1:21999488-21999507 None:intergenic 55.0%
TAAGTCGGAGCCGATGAGGT+CGG - chr2.1:21999895-21999914 MS.gene71318:CDS 55.0%
! ACCCGGAAATGGGTCTTGTC+GGG - chr2.1:21999483-21999502 MS.gene71318:CDS 55.0%
! ACCTTTTTCTCCACTCCGGC+GGG + chr2.1:21999680-21999699 None:intergenic 55.0%
! CTCCGGAGGCTTCTTGTTTC+TGG - chr2.1:21999930-21999949 MS.gene71318:CDS 55.0%
! GACCCGGAAATGGGTCTTGT+CGG - chr2.1:21999482-21999501 MS.gene71318:CDS 55.0%
! GACCTTTTTCTCCACTCCGG+CGG + chr2.1:21999681-21999700 None:intergenic 55.0%
! GTTGGTCTCTGCTACGGCTA+GGG + chr2.1:21997966-21997985 None:intergenic 55.0%
AACGCTTGGAGTCGGAGCTC+CGG - chr2.1:21999988-22000007 MS.gene71318:CDS 60.0%
ACCCGCCGGAGTGGAGAAAA+AGG - chr2.1:21999676-21999695 MS.gene71318:CDS 60.0%
AGCTTCGTCGCCGACCTCAT+CGG + chr2.1:21999908-21999927 None:intergenic 60.0%
CGCCATAGACATTCCGGCAC+CGG + chr2.1:21999801-21999820 None:intergenic 60.0%
GATCTCGGCGGCTGCATCAA+CGG + chr2.1:21999758-21999777 None:intergenic 60.0%
GCTGTAAGTCGGAGCCGATG+AGG - chr2.1:21999891-21999910 MS.gene71318:CDS 60.0%
GGGTCAGCAGAGCGAGGATA+TGG - chr2.1:21999503-21999522 MS.gene71318:CDS 60.0%
TGCATCAACGGCGGATGAGC+AGG + chr2.1:21999746-21999765 None:intergenic 60.0%
TGGTTACCGGAGAGACCCAC+CGG - chr2.1:21999650-21999669 MS.gene71318:CDS 60.0%
! GACCGGTGCCGGAATGTCTA+TGG - chr2.1:21999796-21999815 MS.gene71318:CDS 60.0%
! GGTTTTCCGGTGGGTCTCTC+CGG + chr2.1:21999659-21999678 None:intergenic 60.0%
!! GGTTGGTCTCTGCTACGGCT+AGG + chr2.1:21997967-21997986 None:intergenic 60.0%
AGACCCACCGGAAAACCCGC+CGG - chr2.1:21999662-21999681 MS.gene71318:CDS 65.0%
AGCGTTGCCGGAGGAGGATG+CGG + chr2.1:21999974-21999993 None:intergenic 65.0%
CATCCTCCTCCGGCAACGCT+TGG - chr2.1:21999974-21999993 MS.gene71318:CDS 65.0%
CCTCCGGCAACGCTTGGAGT+CGG - chr2.1:21999980-21999999 MS.gene71318:CDS 65.0%
CTTGTCGGGTCAGCAGAGCG+AGG - chr2.1:21999497-21999516 MS.gene71318:CDS 65.0%
TGTTTGCCGGTGACCGGTGC+CGG - chr2.1:21999785-21999804 MS.gene71318:CDS 65.0%
! ACTCCAAGCGTTGCCGGAGG+AGG + chr2.1:21999980-21999999 None:intergenic 65.0%
! GCTCCGACTCCAAGCGTTGC+CGG + chr2.1:21999986-22000005 None:intergenic 65.0%
! GTCGGCGACGAAGCTTGCTC+CGG - chr2.1:21999913-21999932 MS.gene71318:CDS 65.0%
!! ACTCCGGCGGGTTTTCCGGT+GGG + chr2.1:21999668-21999687 None:intergenic 65.0%
!! CTCCACTCCGGCGGGTTTTC+CGG + chr2.1:21999672-21999691 None:intergenic 65.0%
!! GACATTCCGGCACCGGTCAC+CGG + chr2.1:21999794-21999813 None:intergenic 65.0%
CACCGGAAAACCCGCCGGAG+TGG - chr2.1:21999667-21999686 MS.gene71318:CDS 70.0%
CTCGGCGGCTGCATCAACGG+CGG + chr2.1:21999755-21999774 None:intergenic 70.0%
CTTGGAGTCGGAGCTCCGGC+TGG - chr2.1:21999992-22000011 MS.gene71318:CDS 70.0%
TCGGAGCTCCGGCTGGCGTT+GGG - chr2.1:21999999-22000018 MS.gene71318:CDS 70.0%
! CCGACTCCAAGCGTTGCCGG+AGG + chr2.1:21999983-22000002 None:intergenic 70.0%
! GGCGACGAAGCTTGCTCCGG+AGG - chr2.1:21999916-21999935 MS.gene71318:CDS 70.0%
!! CACTCCGGCGGGTTTTCCGG+TGG + chr2.1:21999669-21999688 None:intergenic 70.0%
GTCGGAGCTCCGGCTGGCGT+TGG - chr2.1:21999998-22000017 MS.gene71318:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 21997934 22000027 21997934 ID=MS.gene71318
chr2.1 mRNA 21997934 22000027 21997934 ID=MS.gene71318.t1;Parent=MS.gene71318
chr2.1 exon 21998854 22000027 21998854 ID=MS.gene71318.t1.exon1;Parent=MS.gene71318.t1
chr2.1 CDS 21998854 22000027 21998854 ID=cds.MS.gene71318.t1;Parent=MS.gene71318.t1
chr2.1 exon 21998626 21998703 21998626 ID=MS.gene71318.t1.exon2;Parent=MS.gene71318.t1
chr2.1 CDS 21998626 21998703 21998626 ID=cds.MS.gene71318.t1;Parent=MS.gene71318.t1
chr2.1 exon 21997934 21998508 21997934 ID=MS.gene71318.t1.exon3;Parent=MS.gene71318.t1
chr2.1 CDS 21997934 21998508 21997934 ID=cds.MS.gene71318.t1;Parent=MS.gene71318.t1
Gene Sequence

>MS.gene71318

ATGAAGCTTTCATCAAAATCAATCTTAAGCCCTAGCCGTAGCAGAGACCAACCACAGATATCACTCTCATCTTCCTTAAGCAGAAGATTAAAGAGCAACGGTAGCATGAAAGGTGGTCAAGCTTCACCAATGTTTCCAACAGGTGGAAAGAAAAGAGGGTGTGGTTTTGAGAATCCAGAGCCTTCATCACCAAAAGTAACTTGCATTGGACAAGTTAGAGTGAAGACAAAGAAACAAGGGAAGAAAATGAGGTCAAGATCAAAGAGAAGAGGTGAAGCTAGTTTTAGAAGAGGTGGTGAAGGGACAAATCCAGATCTAACTAGACAGAATAGTCAAAGTTTGTATCAGAATCATCAAAGTTTGCAACAAGAGTGTTTGAAACATAGGAATCAAAGATGGGTTCATTTGCCTTTGACAATATGTGAAGCTTTGAGAGAGTTTAGTTGCTTTTTTCCTTGTAGGTCTTCTTGTATGTCAAATGAAAGAGACAAAGAGGAAAAGAGTAGCTTAGAAGGAAGAAGAGGAGTAAGATCTAGTGGTGAACATAGTAGAGAAGGTTCATGTGGAGCTGCATTTGCAAGATGGTTGGTGGCTTATCAAGATGGAGATGGAAAAGGGAGAGAGATTGAAGTGATGATGGAGCATCATGATGAGATGGAGATGGTAATGGATGATGAGGATGATGGTGGAAGAGAGAAAGGTGGTGAGAGGAGTTATAGTCAAAGGAGACATATTTTTGAAGATCTTGATATTGATTTGGTTGATGAAAAGATACAAGAAGAGTTTGGTGGTGAAGTAGAAGAAGATGAAGAGAAAGGTAGAGTTAGTATTTGTGTTCCACCAAAGAATGCTCTTTTGTTAATGAGGTGTAGATCTGATCCTGTTAAAATGGCTGCTTTGGCTAACCGTTTTTGGGAATCACCACTTCACAAAGAACAAGACCAAATTGAAGAACATCATCAAATTGAAGATGTAGAACAAGAACAAGAACAAGAGGAGGATAGTGGAGATGAAAATGTAGATGTTGAACATGAAGAGGAACAAGTAGAAGAACAAGGTTACAACAATGAACAAAGCATTGAAATGGAGCAAGTTGAAGAAGAAACAAAACAAGTAGTAGAAGTTGAAAGAGTATCACAAGAAGATAGCATTTGTGAAAGTGAAACACAAGCTAGTGAGGAAAACAATGAAATTGAAAGTAAAATAAACCAAGAAGTTGATGAAGTAGCCAATGAAGAGGAAGAGAAAGATGAAGATGAAAATGAAGTTGGTAATGGAAATGCCATTGATGATGATAAAGTTGAAACCTTTCCATGTGTTTTAGTTGATTCACTTCATGCAGATCTTGAAAAACCAGAAATAGAAGAAACCCATCAAAGAGAAGATGAAGAAAAACAAGAAAGTTCAGAACTTTCTTCTTCATCTTCCTCTTCTTCCCCTGAAACTTTCATAGCTTCTTCAGAACAAGAAAAGTATGAAGTAGAAGTAGAATCAGCAGCAGAAGAAAAAGTTTCAACAGAGGTAGAAGAACCAATCCATCAAGTACTCGACCCGGAAATGGGTCTTGTCGGGTCAGCAGAGCGAGGATATGGAACAAAAAAAGAAGAGAGAGAAAGAGAAACATTGCCAGAATGTTTGTTATTGATGATGTGTGAGCCAAAGCTTTCAATGGAAGTTTCAAAGGAAACATGGGTATGCAGCACTGATTTCATACGGTGGTTACCGGAGAGACCCACCGGAAAACCCGCCGGAGTGGAGAAAAAGGTCACCGTGGAATCATCATCTACAAAACCGAAAGTTAAGGTGAAGCCTGCTCATCCGCCGTTGATGCAGCCGCCGAGATCTTCATGTTGTTTGCCGGTGACCGGTGCCGGAATGTCTATGGCGACTATGATTGAGCAGAAGTTGGTGGGTTGTTCAAAATCTCGTAATGGGTATGAGCCATTTGTTCTCACGCGCTGTAAGTCGGAGCCGATGAGGTCGGCGACGAAGCTTGCTCCGGAGGCTTCTTGTTTCTGGAATAACCGGAAACTTGAACCGCATCCTCCTCCGGCAACGCTTGGAGTCGGAGCTCCGGCTGGCGTTGGGTTTTAG
Protein sequence

>MS.gene71318.t1

MKLSSKSILSPSRSRDQPQISLSSSLSRRLKSNGSMKGGQASPMFPTGGKKRGCGFENPEPSSPKVTCIGQVRVKTKKQGKKMRSRSKRRGEASFRRGGEGTNPDLTRQNSQSLYQNHQSLQQECLKHRNQRWVHLPLTICEALREFSCFFPCRSSCMSNERDKEEKSSLEGRRGVRSSGEHSREGSCGAAFARWLVAYQDGDGKGREIEVMMEHHDEMEMVMDDEDDGGREKGGERSYSQRRHIFEDLDIDLVDEKIQEEFGGEVEEDEEKGRVSICVPPKNALLLMRCRSDPVKMAALANRFWESPLHKEQDQIEEHHQIEDVEQEQEQEEDSGDENVDVEHEEEQVEEQGYNNEQSIEMEQVEEETKQVVEVERVSQEDSICESETQAIDSLHADLEKPEIEETHQREDEEKQEKVEEPIHQVLDPEMGLVGSAERGYGTKKEERERETLPECLLLMMCEPKLSMEVSKETWVCSTDFIRWLPERPTGKPAGVEKKVTVESSSTKPKVKVKPAHPPLMQPPRSSCCLPVTGAGMSMATMIEQKLVGCSKSRNGYEPFVLTRCKSEPMRSATKLAPEASCFWNNRKLEPHPPPATLGVGAPAGVGF