Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71449.t1 | XP_003590791.1 | 84.3 | 383 | 60 | 0 | 1 | 383 | 1 | 383 | 8.40E-145 | 523.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71449.t1 | Q84WL6 | 41.1 | 372 | 168 | 7 | 7 | 373 | 2 | 327 | 8.2e-48 | 192.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71449.t1 | G7I3Y8 | 84.3 | 383 | 60 | 0 | 1 | 383 | 1 | 383 | 6.1e-145 | 523.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051914 | MS.gene71449 | 0.803926 | 2.76E-49 | -1.69E-46 |
| MS.gene054662 | MS.gene71449 | 0.829359 | 5.38E-55 | -1.69E-46 |
| MS.gene05640 | MS.gene71449 | 0.806394 | 8.40E-50 | -1.69E-46 |
| MS.gene05652 | MS.gene71449 | 0.802757 | 4.82E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene71449 | 0.800814 | 1.21E-48 | -1.69E-46 |
| MS.gene05960 | MS.gene71449 | 0.818328 | 2.08E-52 | -1.69E-46 |
| MS.gene06093 | MS.gene71449 | 0.823147 | 1.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71449.t1 | MTR_1g075310 | 92.689 | 383 | 28 | 0 | 1 | 383 | 1 | 383 | 0.0 | 726 |
| MS.gene71449.t1 | MTR_1g080690 | 37.736 | 318 | 161 | 9 | 1 | 313 | 8 | 293 | 3.62e-43 | 154 |
| MS.gene71449.t1 | MTR_7g115310 | 59.559 | 136 | 51 | 1 | 179 | 314 | 178 | 309 | 2.99e-32 | 129 |
| MS.gene71449.t1 | MTR_7g106750 | 54.198 | 131 | 54 | 3 | 185 | 315 | 213 | 337 | 1.18e-30 | 121 |
| MS.gene71449.t1 | MTR_1g012530 | 60.870 | 92 | 36 | 0 | 217 | 308 | 229 | 320 | 2.09e-29 | 118 |
| MS.gene71449.t1 | MTR_3g107050 | 60.870 | 92 | 36 | 0 | 217 | 308 | 212 | 303 | 8.26e-29 | 117 |
| MS.gene71449.t1 | MTR_1g055085 | 61.290 | 93 | 35 | 1 | 213 | 305 | 231 | 322 | 2.18e-27 | 112 |
| MS.gene71449.t1 | MTR_1g012530 | 58.667 | 75 | 31 | 0 | 217 | 291 | 229 | 303 | 3.88e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71449.t1 | AT3G23090 | 49.701 | 334 | 128 | 7 | 7 | 333 | 2 | 302 | 7.96e-84 | 259 |
| MS.gene71449.t1 | AT3G23090 | 49.701 | 334 | 128 | 7 | 7 | 333 | 38 | 338 | 2.73e-83 | 259 |
| MS.gene71449.t1 | AT3G23090 | 49.401 | 334 | 129 | 7 | 7 | 333 | 3 | 303 | 5.74e-83 | 256 |
| MS.gene71449.t1 | AT3G23090 | 49.112 | 338 | 128 | 8 | 7 | 333 | 2 | 306 | 2.35e-82 | 255 |
| MS.gene71449.t1 | AT3G23090 | 49.112 | 338 | 128 | 8 | 7 | 333 | 38 | 342 | 8.99e-82 | 255 |
| MS.gene71449.t1 | AT1G54460 | 47.566 | 267 | 107 | 8 | 63 | 326 | 40 | 276 | 2.74e-60 | 198 |
| MS.gene71449.t1 | AT3G04630 | 60.993 | 141 | 52 | 2 | 168 | 305 | 82 | 222 | 2.52e-50 | 171 |
| MS.gene71449.t1 | AT3G04630 | 60.993 | 141 | 52 | 2 | 168 | 305 | 78 | 218 | 3.02e-50 | 171 |
| MS.gene71449.t1 | AT3G04630 | 62.222 | 135 | 49 | 1 | 173 | 305 | 83 | 217 | 4.04e-50 | 170 |
| MS.gene71449.t1 | AT5G28646 | 52.174 | 161 | 68 | 3 | 156 | 314 | 34 | 187 | 3.51e-41 | 144 |
| MS.gene71449.t1 | AT5G28646 | 52.174 | 161 | 68 | 3 | 156 | 314 | 34 | 187 | 3.51e-41 | 144 |
| MS.gene71449.t1 | AT5G28646 | 57.895 | 133 | 50 | 2 | 184 | 314 | 55 | 183 | 1.25e-40 | 142 |
| MS.gene71449.t1 | AT2G35880 | 57.252 | 131 | 53 | 2 | 178 | 308 | 210 | 337 | 3.90e-33 | 129 |
| MS.gene71449.t1 | AT2G35880 | 57.252 | 131 | 53 | 2 | 178 | 308 | 210 | 337 | 3.90e-33 | 129 |
| MS.gene71449.t1 | AT2G35880 | 57.252 | 131 | 53 | 2 | 178 | 308 | 210 | 337 | 3.90e-33 | 129 |
| MS.gene71449.t1 | AT4G32330 | 53.279 | 122 | 57 | 0 | 189 | 310 | 180 | 301 | 2.31e-30 | 121 |
| MS.gene71449.t1 | AT4G32330 | 53.279 | 122 | 57 | 0 | 189 | 310 | 180 | 301 | 2.31e-30 | 121 |
| MS.gene71449.t1 | AT4G32330 | 53.279 | 122 | 57 | 0 | 189 | 310 | 180 | 301 | 2.31e-30 | 121 |
| MS.gene71449.t1 | AT4G32330 | 60.638 | 94 | 37 | 0 | 217 | 310 | 207 | 300 | 5.25e-30 | 120 |
| MS.gene71449.t1 | AT2G25480 | 60.870 | 92 | 36 | 0 | 217 | 308 | 183 | 274 | 3.57e-27 | 111 |
| MS.gene71449.t1 | AT2G25480 | 60.870 | 92 | 36 | 0 | 217 | 308 | 184 | 275 | 3.58e-27 | 111 |
| MS.gene71449.t1 | AT1G70950 | 50.617 | 81 | 40 | 0 | 218 | 298 | 330 | 410 | 4.35e-16 | 80.1 |
Find 77 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCAATATTGTGGTTAT+TGG | 0.126610 | 1.3:+53897005 | None:intergenic |
| GATTCATGTTCAGTTGCTTC+TGG | 0.221500 | 1.3:-53896405 | MS.gene71449:CDS |
| CTCTTTCGCCGGCCCAGCTT+TGG | 0.232565 | 1.3:+53895382 | None:intergenic |
| TCTGAATGTTTCTTGTTATC+AGG | 0.235516 | 1.3:+53896435 | None:intergenic |
| GATGGAATCTCGCACGATTC+AGG | 0.274119 | 1.3:-53897042 | MS.gene71449:CDS |
| CTTTCAGTTGCTAGGGAAAA+TGG | 0.316077 | 1.3:+53896739 | None:intergenic |
| ACTCCTCCTCAACTGTTTGA+TGG | 0.328938 | 1.3:+53895882 | None:intergenic |
| TCTGAAGGGGTCAAAGAAAA+AGG | 0.336391 | 1.3:-53895337 | MS.gene71449:CDS |
| TTGCTTCTGCTCCAAGCTTT+CGG | 0.336692 | 1.3:-53896211 | MS.gene71449:CDS |
| CTGATTCTGCTTAAGCGTAT+TGG | 0.344910 | 1.3:+53896624 | None:intergenic |
| AACGGTTTCCTTGGAACTAA+AGG | 0.390764 | 1.3:+53896462 | None:intergenic |
| AATATTGTGGTTATTGGTTA+CGG | 0.395125 | 1.3:+53897011 | None:intergenic |
| ATTCATGTTCAGTTGCTTCT+GGG | 0.401381 | 1.3:-53896404 | MS.gene71449:intron |
| TTGTTATCTTCTTCAAAAGT+AGG | 0.404232 | 1.3:+53896694 | None:intergenic |
| ATCACTCAAGTTACAGTTGT+TGG | 0.411012 | 1.3:+53895279 | None:intergenic |
| GAAGATAACAAGGCTGCTAA+TGG | 0.426994 | 1.3:-53896682 | MS.gene71449:CDS |
| TCAGGTTTCAACGGTTTCCT+TGG | 0.446814 | 1.3:+53896453 | None:intergenic |
| AGTGTGCTCGGTCTCGTTGT+CGG | 0.447114 | 1.3:+53895216 | None:intergenic |
| CTGTGAGGTCGTTCAAGTCC+AGG | 0.451888 | 1.3:-53896241 | MS.gene71449:CDS |
| CAATACGCTTAAGCAGAATC+AGG | 0.458615 | 1.3:-53896623 | MS.gene71449:intron |
| CGTTCAGTCGACCGAAAGCT+TGG | 0.459272 | 1.3:+53896200 | None:intergenic |
| TTCGATTAATTCAGTGTGCT+CGG | 0.459851 | 1.3:+53895204 | None:intergenic |
| ACGTGCAAAATCTCCAAAGC+TGG | 0.463249 | 1.3:-53895395 | MS.gene71449:CDS |
| TACAACAGAAGTTTCTGTTA+AGG | 0.465193 | 1.3:-53896905 | MS.gene71449:CDS |
| CCATGAGGGGCCTCCACCTA+AGG | 0.469379 | 1.3:-53895824 | MS.gene71449:CDS |
| ATTAATATGATCAAAGTGAA+TGG | 0.469665 | 1.3:-53895178 | MS.gene71449:CDS |
| CAAAATCTCCAAAGCTGGGC+CGG | 0.476917 | 1.3:-53895390 | MS.gene71449:CDS |
| TTCAGATATTTGTATCATCA+AGG | 0.486869 | 1.3:-53897091 | MS.gene71449:CDS |
| ATCGATTAAGGAAGAGAAAG+AGG | 0.493171 | 1.3:-53895908 | MS.gene71449:intron |
| ACCTTCTTCAAGTCAACCTT+AGG | 0.493715 | 1.3:+53895808 | None:intergenic |
| TGAAGTCTCCTTTAGTTCCA+AGG | 0.494501 | 1.3:-53896470 | MS.gene71449:CDS |
| GAATAGACTACGACACGATC+TGG | 0.495634 | 1.3:+53897066 | None:intergenic |
| AGCAGAAGCAACAGTTGCCC+TGG | 0.512471 | 1.3:+53896223 | None:intergenic |
| TTCTTCAAGTCAACCTTAGG+TGG | 0.518571 | 1.3:+53895811 | None:intergenic |
| GGCCCCTCATGGTAAAAGCT+TGG | 0.526227 | 1.3:+53895835 | None:intergenic |
| TCATGGTAAAAGCTTGGCAT+AGG | 0.526470 | 1.3:+53895841 | None:intergenic |
| AGCACGCCTTTCAGTTGCTA+GGG | 0.527177 | 1.3:+53896732 | None:intergenic |
| TTCAAGTCAACCTTAGGTGG+AGG | 0.528551 | 1.3:+53895814 | None:intergenic |
| GAAAATGGTCGCGGAACTGT+AGG | 0.532713 | 1.3:+53896754 | None:intergenic |
| CACCGCTGTTGCTCTTTCGC+CGG | 0.539391 | 1.3:+53895371 | None:intergenic |
| TAGCACGCCTTTCAGTTGCT+AGG | 0.543009 | 1.3:+53896731 | None:intergenic |
| TTCTTGTTATCAGGTTTCAA+CGG | 0.554280 | 1.3:+53896444 | None:intergenic |
| AGAGGAAAAGCAACAAGCAA+TGG | 0.560439 | 1.3:-53896059 | MS.gene71449:CDS |
| GGTGTAGTTAATTCATCTGA+AGG | 0.562023 | 1.3:-53895352 | MS.gene71449:CDS |
| CATGGTAAAAGCTTGGCATA+GGG | 0.564639 | 1.3:+53895842 | None:intergenic |
| CACAAAGGAATACGAGGTGA+AGG | 0.571994 | 1.3:-53896932 | MS.gene71449:CDS |
| CGTGCAAAATCTCCAAAGCT+GGG | 0.573361 | 1.3:-53895394 | MS.gene71449:CDS |
| CATAAGACTCTGCAATATTG+TGG | 0.573869 | 1.3:+53896998 | None:intergenic |
| CCTTAGGTGGAGGCCCCTCA+TGG | 0.574648 | 1.3:+53895824 | None:intergenic |
| ACTACCGACAGTGGCTTGGA+TGG | 0.577481 | 1.3:-53895253 | MS.gene71449:CDS |
| GTGTAGTTAATTCATCTGAA+GGG | 0.579266 | 1.3:-53895351 | MS.gene71449:CDS |
| TGAATCGTGCGAGATTCCAT+CGG | 0.580124 | 1.3:+53897044 | None:intergenic |
| ATAACAAGGCTGCTAATGGA+AGG | 0.581013 | 1.3:-53896678 | MS.gene71449:CDS |
| ACCTAAGGTTGACTTGAAGA+AGG | 0.581399 | 1.3:-53895809 | MS.gene71449:intron |
| ATCAAAGTGAATGGACAAGC+GGG | 0.581724 | 1.3:-53895169 | MS.gene71449:CDS |
| TGAACGTGCACAAAGAAGAA+AGG | 0.582792 | 1.3:-53896183 | MS.gene71449:CDS |
| TGTGACTACCGACAGTGGCT+TGG | 0.584826 | 1.3:-53895257 | MS.gene71449:CDS |
| AAGCCATCAAACAGTTGAGG+AGG | 0.591790 | 1.3:-53895885 | MS.gene71449:CDS |
| TGTGAGGTCGTTCAAGTCCA+GGG | 0.595446 | 1.3:-53896240 | MS.gene71449:CDS |
| AGGAAGCCATCAAACAGTTG+AGG | 0.603449 | 1.3:-53895888 | MS.gene71449:CDS |
| TCAAAATGAAGCAAGGAGCA+AGG | 0.605637 | 1.3:-53896023 | MS.gene71449:intron |
| AGAAGAATCAAAATGAAGCA+AGG | 0.613159 | 1.3:-53896030 | MS.gene71449:CDS |
| GTTGCTAGGGAAAATGGTCG+CGG | 0.629133 | 1.3:+53896745 | None:intergenic |
| GAGACCATCCAAGCCACTGT+CGG | 0.630660 | 1.3:+53895249 | None:intergenic |
| GGCCGGCGAAAGAGCAACAG+CGG | 0.632330 | 1.3:-53895373 | MS.gene71449:CDS |
| CGTGTCGTAGTCTATTCCGA+TGG | 0.632799 | 1.3:-53897060 | MS.gene71449:CDS |
| TGTAGTTAATTCATCTGAAG+GGG | 0.636048 | 1.3:-53895350 | MS.gene71449:CDS |
| TCTGATGTTAGATACGTCGG+AGG | 0.654106 | 1.3:+53896882 | None:intergenic |
| GATCAAAGTGAATGGACAAG+CGG | 0.657804 | 1.3:-53895170 | MS.gene71449:CDS |
| GTAGGCTTCACAGTATCTCG+TGG | 0.668687 | 1.3:+53896772 | None:intergenic |
| AAATGAGGAGAAGTTAACAT+CGG | 0.669633 | 1.3:-53896857 | MS.gene71449:CDS |
| AGAGAGCACAAAGGAATACG+AGG | 0.687992 | 1.3:-53896938 | MS.gene71449:CDS |
| ACGTGCACAAAGAAGAAAGG+AGG | 0.694653 | 1.3:-53896180 | MS.gene71449:intron |
| TAGTTCAGAAGAGAGCACAA+AGG | 0.711655 | 1.3:-53896947 | MS.gene71449:CDS |
| AAAGAACTGCAACTTCTGTG+AGG | 0.712590 | 1.3:-53896256 | MS.gene71449:intron |
| AGTGATGTGACTACCGACAG+TGG | 0.716119 | 1.3:-53895262 | MS.gene71449:CDS |
| TAACAAGAAACATTCAGACG+AGG | 0.732280 | 1.3:-53896430 | MS.gene71449:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAACAACTTAATTAAG+TGG | - | chr1.3:53896503-53896522 | MS.gene71449:intron | 15.0% |
| !!! | ATAGTTTTATTCAAAATTAG+AGG | - | chr1.3:53896175-53896194 | MS.gene71449:intron | 15.0% |
| !! | AAACTATAGCACAAATAAAA+AGG | + | chr1.3:53896162-53896181 | None:intergenic | 20.0% |
| !! | AACTATAGCACAAATAAAAA+GGG | + | chr1.3:53896161-53896180 | None:intergenic | 20.0% |
| !! | ATTAATATGATCAAAGTGAA+TGG | - | chr1.3:53897074-53897093 | MS.gene71449:CDS | 20.0% |
| !! | CAAAATGACAATGTAATTTA+TGG | + | chr1.3:53896285-53896304 | None:intergenic | 20.0% |
| !! | TAATTAAGTGGTTATCATAT+AGG | - | chr1.3:53896515-53896534 | MS.gene71449:intron | 20.0% |
| !!! | ATTAAGTTGTTTATATCAAC+AGG | + | chr1.3:53896499-53896518 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATATCAACA+GGG | + | chr1.3:53896498-53896517 | None:intergenic | 20.0% |
| !!! | TTTGACTTCATTTTATCTTT+TGG | + | chr1.3:53896566-53896585 | None:intergenic | 20.0% |
| ! | AATGACAAAGTTAACATGTA+TGG | - | chr1.3:53896819-53896838 | MS.gene71449:CDS | 25.0% |
| ! | ATCTAACATCAGAAAAAATG+AGG | - | chr1.3:53895380-53895399 | MS.gene71449:CDS | 25.0% |
| ! | TTATAAACCTTATAGTCGAA+GGG | - | chr1.3:53895878-53895897 | MS.gene71449:CDS | 25.0% |
| ! | TTCAGATATTTGTATCATCA+AGG | - | chr1.3:53895161-53895180 | MS.gene71449:CDS | 25.0% |
| ! | TTGTTATCTTCTTCAAAAGT+AGG | + | chr1.3:53895561-53895580 | None:intergenic | 25.0% |
| !! | AATATTGTGGTTATTGGTTA+CGG | + | chr1.3:53895244-53895263 | None:intergenic | 25.0% |
| !!! | AGCACATTCTTTTTATTTAC+AGG | + | chr1.3:53895603-53895622 | None:intergenic | 25.0% |
| !!! | TAAGTAGCTTTGTTTCAATA+GGG | - | chr1.3:53896109-53896128 | MS.gene71449:intron | 25.0% |
| !!! | TACTTTTGAAGAAGATAACA+AGG | - | chr1.3:53895560-53895579 | MS.gene71449:intron | 25.0% |
| !!! | TCTAATTTGTTCATCGATTA+AGG | - | chr1.3:53896332-53896351 | MS.gene71449:intron | 25.0% |
| !!! | TTAAGTAGCTTTGTTTCAAT+AGG | - | chr1.3:53896108-53896127 | MS.gene71449:intron | 25.0% |
| AAATGAGGAGAAGTTAACAT+CGG | - | chr1.3:53895395-53895414 | MS.gene71449:CDS | 30.0% | |
| AATAGATTAGACAATGAAGG+AGG | + | chr1.3:53895679-53895698 | None:intergenic | 30.0% | |
| AGAAGAATCAAAATGAAGCA+AGG | - | chr1.3:53896222-53896241 | MS.gene71449:CDS | 30.0% | |
| AGAGATTTCTTCATTATCTC+AGG | - | chr1.3:53896257-53896276 | MS.gene71449:intron | 30.0% | |
| AGCAATAGATTAGACAATGA+AGG | + | chr1.3:53895682-53895701 | None:intergenic | 30.0% | |
| ATCTATTGCTGAACTGTTTA+TGG | - | chr1.3:53895692-53895711 | MS.gene71449:intron | 30.0% | |
| CAAATTAGAGTGAGAAAACT+AGG | + | chr1.3:53896321-53896340 | None:intergenic | 30.0% | |
| CTTATAAACCTTATAGTCGA+AGG | - | chr1.3:53895877-53895896 | MS.gene71449:CDS | 30.0% | |
| GTGTAGTTAATTCATCTGAA+GGG | - | chr1.3:53896901-53896920 | MS.gene71449:CDS | 30.0% | |
| TACAACAGAAGTTTCTGTTA+AGG | - | chr1.3:53895347-53895366 | MS.gene71449:CDS | 30.0% | |
| TCGTACATGATACTGTTATA+AGG | + | chr1.3:53896681-53896700 | None:intergenic | 30.0% | |
| TGTAGTTAATTCATCTGAAG+GGG | - | chr1.3:53896902-53896921 | MS.gene71449:CDS | 30.0% | |
| TTATAACAGTATCATGTACG+AGG | - | chr1.3:53896680-53896699 | MS.gene71449:CDS | 30.0% | |
| ! | AAGTTAACATCGGATTTTGA+GGG | - | chr1.3:53895405-53895424 | MS.gene71449:CDS | 30.0% |
| ! | TCTGAATGTTTCTTGTTATC+AGG | + | chr1.3:53895820-53895839 | None:intergenic | 30.0% |
| ! | TTCTTGTTATCAGGTTTCAA+CGG | + | chr1.3:53895811-53895830 | None:intergenic | 30.0% |
| ! | TTTTCTGATGTTAGATACGT+CGG | + | chr1.3:53895376-53895395 | None:intergenic | 30.0% |
| AGAAGTTGCAGTTCTTTACA+TGG | + | chr1.3:53895993-53896012 | None:intergenic | 35.0% | |
| ATCACTCAAGTTACAGTTGT+TGG | + | chr1.3:53896976-53896995 | None:intergenic | 35.0% | |
| ATCGATTAAGGAAGAGAAAG+AGG | - | chr1.3:53896344-53896363 | MS.gene71449:intron | 35.0% | |
| ATTCATGTTCAGTTGCTTCT+GGG | - | chr1.3:53895848-53895867 | MS.gene71449:CDS | 35.0% | |
| CATAAGACTCTGCAATATTG+TGG | + | chr1.3:53895257-53895276 | None:intergenic | 35.0% | |
| CTCTGCAATATTGTGGTTAT+TGG | + | chr1.3:53895250-53895269 | None:intergenic | 35.0% | |
| GGAGGAAGCAAATTCAAAAT+CGG | + | chr1.3:53895661-53895680 | None:intergenic | 35.0% | |
| GGTGTAGTTAATTCATCTGA+AGG | - | chr1.3:53896900-53896919 | MS.gene71449:CDS | 35.0% | |
| TAACAAGAAACATTCAGACG+AGG | - | chr1.3:53895822-53895841 | MS.gene71449:CDS | 35.0% | |
| TTCGAAACCGCAAAAAACAA+GGG | - | chr1.3:53895446-53895465 | MS.gene71449:intron | 35.0% | |
| TTCGATTAATTCAGTGTGCT+CGG | + | chr1.3:53897051-53897070 | None:intergenic | 35.0% | |
| ! | GAAGTTAACATCGGATTTTG+AGG | - | chr1.3:53895404-53895423 | MS.gene71449:CDS | 35.0% |
| ! | GACTTGAAGAAGGTATGTAA+TGG | - | chr1.3:53896453-53896472 | MS.gene71449:CDS | 35.0% |
| ! | GGTTTTCTTCCCAAATTGAT+CGG | - | chr1.3:53896130-53896149 | MS.gene71449:intron | 35.0% |
| !!! | TGATTACCCCTTGTTTTTTG+CGG | + | chr1.3:53895456-53895475 | None:intergenic | 35.0% |
| AAAGAACTGCAACTTCTGTG+AGG | - | chr1.3:53895996-53896015 | MS.gene71449:intron | 40.0% | |
| AACGGTTTCCTTGGAACTAA+AGG | + | chr1.3:53895793-53895812 | None:intergenic | 40.0% | |
| ACCTTCTTCAAGTCAACCTT+AGG | + | chr1.3:53896447-53896466 | None:intergenic | 40.0% | |
| AGAGGAAAAGCAACAAGCAA+TGG | - | chr1.3:53896193-53896212 | MS.gene71449:CDS | 40.0% | |
| ATAACAAGGCTGCTAATGGA+AGG | - | chr1.3:53895574-53895593 | MS.gene71449:intron | 40.0% | |
| ATCAAAGTGAATGGACAAGC+GGG | - | chr1.3:53897083-53897102 | MS.gene71449:CDS | 40.0% | |
| CAATACGCTTAAGCAGAATC+AGG | - | chr1.3:53895629-53895648 | MS.gene71449:intron | 40.0% | |
| CAGTTCTTTACATGGTCAAG+GGG | + | chr1.3:53895985-53896004 | None:intergenic | 40.0% | |
| CATGGTAAAAGCTTGGCATA+GGG | + | chr1.3:53896413-53896432 | None:intergenic | 40.0% | |
| CTGATTCTGCTTAAGCGTAT+TGG | + | chr1.3:53895631-53895650 | None:intergenic | 40.0% | |
| CTTTCAGTTGCTAGGGAAAA+TGG | + | chr1.3:53895516-53895535 | None:intergenic | 40.0% | |
| GAAGATAACAAGGCTGCTAA+TGG | - | chr1.3:53895570-53895589 | MS.gene71449:intron | 40.0% | |
| GATCAAAGTGAATGGACAAG+CGG | - | chr1.3:53897082-53897101 | MS.gene71449:CDS | 40.0% | |
| GATTCATGTTCAGTTGCTTC+TGG | - | chr1.3:53895847-53895866 | MS.gene71449:CDS | 40.0% | |
| GCAGTTCTTTACATGGTCAA+GGG | + | chr1.3:53895986-53896005 | None:intergenic | 40.0% | |
| GTTCGAAACCGCAAAAAACA+AGG | - | chr1.3:53895445-53895464 | MS.gene71449:intron | 40.0% | |
| TAAAGGAGACTTCAACTGCA+AGG | + | chr1.3:53895776-53895795 | None:intergenic | 40.0% | |
| TCAAAATGAAGCAAGGAGCA+AGG | - | chr1.3:53896229-53896248 | MS.gene71449:CDS | 40.0% | |
| TCATGGTAAAAGCTTGGCAT+AGG | + | chr1.3:53896414-53896433 | None:intergenic | 40.0% | |
| TCGAAACCGCAAAAAACAAG+GGG | - | chr1.3:53895447-53895466 | MS.gene71449:intron | 40.0% | |
| TCTGAAGGGGTCAAAGAAAA+AGG | - | chr1.3:53896915-53896934 | MS.gene71449:CDS | 40.0% | |
| TGAACGTGCACAAAGAAGAA+AGG | - | chr1.3:53896069-53896088 | MS.gene71449:CDS | 40.0% | |
| TGCAGTTCTTTACATGGTCA+AGG | + | chr1.3:53895987-53896006 | None:intergenic | 40.0% | |
| TTCTTCAAGTCAACCTTAGG+TGG | + | chr1.3:53896444-53896463 | None:intergenic | 40.0% | |
| TTTGACACCCTTCGACTATA+AGG | + | chr1.3:53895888-53895907 | None:intergenic | 40.0% | |
| ! | ATGCCAAGCTTTTACCATGA+GGG | - | chr1.3:53896414-53896433 | MS.gene71449:CDS | 40.0% |
| ! | CATTTTCCCTAGCAACTGAA+AGG | - | chr1.3:53895514-53895533 | MS.gene71449:intron | 40.0% |
| ! | TAGTTCAGAAGAGAGCACAA+AGG | - | chr1.3:53895305-53895324 | MS.gene71449:CDS | 40.0% |
| ! | TATGCCAAGCTTTTACCATG+AGG | - | chr1.3:53896413-53896432 | MS.gene71449:CDS | 40.0% |
| ! | TGAAGTCTCCTTTAGTTCCA+AGG | - | chr1.3:53895782-53895801 | MS.gene71449:intron | 40.0% |
| ! | TTTGGAGATTTTGCACGTGT+GGG | + | chr1.3:53896855-53896874 | None:intergenic | 40.0% |
| !! | ACCTAAGGTTGACTTGAAGA+AGG | - | chr1.3:53896443-53896462 | MS.gene71449:CDS | 40.0% |
| AAGCCATCAAACAGTTGAGG+AGG | - | chr1.3:53896367-53896386 | MS.gene71449:intron | 45.0% | |
| ACGTGCAAAATCTCCAAAGC+TGG | - | chr1.3:53896857-53896876 | MS.gene71449:CDS | 45.0% | |
| ACGTGCACAAAGAAGAAAGG+AGG | - | chr1.3:53896072-53896091 | MS.gene71449:CDS | 45.0% | |
| ACTCCTCCTCAACTGTTTGA+TGG | + | chr1.3:53896373-53896392 | None:intergenic | 45.0% | |
| AGGAAGCCATCAAACAGTTG+AGG | - | chr1.3:53896364-53896383 | MS.gene71449:intron | 45.0% | |
| AGGGGTCAAAGAAAAAGGAG+CGG | - | chr1.3:53896920-53896939 | MS.gene71449:CDS | 45.0% | |
| CACAAAGGAATACGAGGTGA+AGG | - | chr1.3:53895320-53895339 | MS.gene71449:CDS | 45.0% | |
| CGTGCAAAATCTCCAAAGCT+GGG | - | chr1.3:53896858-53896877 | MS.gene71449:CDS | 45.0% | |
| GAATAGACTACGACACGATC+TGG | + | chr1.3:53895189-53895208 | None:intergenic | 45.0% | |
| TCAGGTTTCAACGGTTTCCT+TGG | + | chr1.3:53895802-53895821 | None:intergenic | 45.0% | |
| TCTGATGTTAGATACGTCGG+AGG | + | chr1.3:53895373-53895392 | None:intergenic | 45.0% | |
| TGAATCGTGCGAGATTCCAT+CGG | + | chr1.3:53895211-53895230 | None:intergenic | 45.0% | |
| TTCAAGTCAACCTTAGGTGG+AGG | + | chr1.3:53896441-53896460 | None:intergenic | 45.0% | |
| TTGCTTCTGCTCCAAGCTTT+CGG | - | chr1.3:53896041-53896060 | MS.gene71449:CDS | 45.0% | |
| ! | AAGGGATGCACCGATCAATT+TGG | + | chr1.3:53896143-53896162 | None:intergenic | 45.0% |
| ! | AGAGAGCACAAAGGAATACG+AGG | - | chr1.3:53895314-53895333 | MS.gene71449:CDS | 45.0% |
| ! | AGGGATGCACCGATCAATTT+GGG | + | chr1.3:53896142-53896161 | None:intergenic | 45.0% |
| ! | TGCCAAGCTTTTACCATGAG+GGG | - | chr1.3:53896415-53896434 | MS.gene71449:CDS | 45.0% |
| !! | CTTTGGAGATTTTGCACGTG+TGG | + | chr1.3:53896856-53896875 | None:intergenic | 45.0% |
| AGCACGCCTTTCAGTTGCTA+GGG | + | chr1.3:53895523-53895542 | None:intergenic | 50.0% | |
| AGTGATGTGACTACCGACAG+TGG | - | chr1.3:53896990-53897009 | MS.gene71449:CDS | 50.0% | |
| CAAAATCTCCAAAGCTGGGC+CGG | - | chr1.3:53896862-53896881 | MS.gene71449:CDS | 50.0% | |
| CGTGTCGTAGTCTATTCCGA+TGG | - | chr1.3:53895192-53895211 | MS.gene71449:CDS | 50.0% | |
| GAAAATGGTCGCGGAACTGT+AGG | + | chr1.3:53895501-53895520 | None:intergenic | 50.0% | |
| GATGGAATCTCGCACGATTC+AGG | - | chr1.3:53895210-53895229 | MS.gene71449:CDS | 50.0% | |
| GTAGGCTTCACAGTATCTCG+TGG | + | chr1.3:53895483-53895502 | None:intergenic | 50.0% | |
| GTTGCTAGGGAAAATGGTCG+CGG | + | chr1.3:53895510-53895529 | None:intergenic | 50.0% | |
| TAGCACGCCTTTCAGTTGCT+AGG | + | chr1.3:53895524-53895543 | None:intergenic | 50.0% | |
| TGTGAGGTCGTTCAAGTCCA+GGG | - | chr1.3:53896012-53896031 | MS.gene71449:intron | 50.0% | |
| AGCAGAAGCAACAGTTGCCC+TGG | + | chr1.3:53896032-53896051 | None:intergenic | 55.0% | |
| AGTGTGCTCGGTCTCGTTGT+CGG | + | chr1.3:53897039-53897058 | None:intergenic | 55.0% | |
| CGTTCAGTCGACCGAAAGCT+TGG | + | chr1.3:53896055-53896074 | None:intergenic | 55.0% | |
| CTGTGAGGTCGTTCAAGTCC+AGG | - | chr1.3:53896011-53896030 | MS.gene71449:intron | 55.0% | |
| GAGACCATCCAAGCCACTGT+CGG | + | chr1.3:53897006-53897025 | None:intergenic | 55.0% | |
| GGCCCCTCATGGTAAAAGCT+TGG | + | chr1.3:53896420-53896439 | None:intergenic | 55.0% | |
| TGTGACTACCGACAGTGGCT+TGG | - | chr1.3:53896995-53897014 | MS.gene71449:CDS | 55.0% | |
| ! | ACTACCGACAGTGGCTTGGA+TGG | - | chr1.3:53896999-53897018 | MS.gene71449:CDS | 55.0% |
| ! | GGAGATTTTGCACGTGTGGG+TGG | + | chr1.3:53896852-53896871 | None:intergenic | 55.0% |
| CACCGCTGTTGCTCTTTCGC+CGG | + | chr1.3:53896884-53896903 | None:intergenic | 60.0% | |
| TTGCACGTGTGGGTGGTAGC+TGG | + | chr1.3:53896845-53896864 | None:intergenic | 60.0% | |
| CCATGAGGGGCCTCCACCTA+AGG | - | chr1.3:53896428-53896447 | MS.gene71449:CDS | 65.0% | |
| CCTTAGGTGGAGGCCCCTCA+TGG | + | chr1.3:53896431-53896450 | None:intergenic | 65.0% | |
| CTCTTTCGCCGGCCCAGCTT+TGG | + | chr1.3:53896873-53896892 | None:intergenic | 65.0% | |
| GGCCGGCGAAAGAGCAACAG+CGG | - | chr1.3:53896879-53896898 | MS.gene71449:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 53895147 | 53897127 | 53895147 | ID=MS.gene71449 |
| chr1.3 | mRNA | 53895147 | 53897127 | 53895147 | ID=MS.gene71449.t1;Parent=MS.gene71449 |
| chr1.3 | exon | 53896624 | 53897127 | 53896624 | ID=MS.gene71449.t1.exon1;Parent=MS.gene71449.t1 |
| chr1.3 | CDS | 53896624 | 53897127 | 53896624 | ID=cds.MS.gene71449.t1;Parent=MS.gene71449.t1 |
| chr1.3 | exon | 53896405 | 53896493 | 53896405 | ID=MS.gene71449.t1.exon2;Parent=MS.gene71449.t1 |
| chr1.3 | CDS | 53896405 | 53896493 | 53896405 | ID=cds.MS.gene71449.t1;Parent=MS.gene71449.t1 |
| chr1.3 | exon | 53896181 | 53896274 | 53896181 | ID=MS.gene71449.t1.exon3;Parent=MS.gene71449.t1 |
| chr1.3 | CDS | 53896181 | 53896274 | 53896181 | ID=cds.MS.gene71449.t1;Parent=MS.gene71449.t1 |
| chr1.3 | exon | 53896024 | 53896095 | 53896024 | ID=MS.gene71449.t1.exon4;Parent=MS.gene71449.t1 |
| chr1.3 | CDS | 53896024 | 53896095 | 53896024 | ID=cds.MS.gene71449.t1;Parent=MS.gene71449.t1 |
| chr1.3 | exon | 53895810 | 53895920 | 53895810 | ID=MS.gene71449.t1.exon5;Parent=MS.gene71449.t1 |
| chr1.3 | CDS | 53895810 | 53895920 | 53895810 | ID=cds.MS.gene71449.t1;Parent=MS.gene71449.t1 |
| chr1.3 | exon | 53895147 | 53895428 | 53895147 | ID=MS.gene71449.t1.exon6;Parent=MS.gene71449.t1 |
| chr1.3 | CDS | 53895147 | 53895428 | 53895147 | ID=cds.MS.gene71449.t1;Parent=MS.gene71449.t1 |
| Gene Sequence |
| Protein sequence |
