AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05640.t1 MTR_3g462130 99.624 266 1 0 1 266 1 266 0.0 545
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05640.t1 AT2G29570 89.057 265 28 1 1 265 1 264 5.97e-179 493
MS.gene05640.t1 AT1G07370 90.152 264 25 1 1 264 1 263 1.59e-178 491

Find 60 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTTCTCAAGAAGGTTT+TGG 0.265918 3.2:-53177787 MS.gene05640:CDS
CTGTGACCGGAATCTTTCTA+TGG 0.269865 3.2:-53177631 MS.gene05640:CDS
TGATGATATCATTACTATTA+AGG 0.286022 3.2:-53177562 MS.gene05640:CDS
TAGTGAGCACCTTGGAATTC+CGG 0.336220 3.2:-53176108 MS.gene05640:CDS
TTGCTGAGATGGGTTATGTT+AGG 0.359199 3.2:-53175484 MS.gene05640:CDS
GGGTTATGTTAGGTTCTATC+TGG 0.362548 3.2:-53175474 MS.gene05640:CDS
CATCTATATCCAACTAAACT+TGG 0.366524 3.2:+53175414 None:intergenic
TGGTTTCTCCCTTCAAGCTA+TGG 0.380238 3.2:-53177715 MS.gene05640:CDS
TTAGAACTCCGTCTAGTTCA+AGG 0.383436 3.2:-53177810 MS.gene05640:CDS
GGGTATGAATCTGAACAATA+TGG 0.386205 3.2:-53177610 MS.gene05640:CDS
AAAATCAGAAATCTTGTCTT+GGG 0.388430 3.2:+53176154 None:intergenic
GAGCTGCAAACATAGTTTGC+AGG 0.393234 3.2:-53175845 MS.gene05640:CDS
CAAAATCAGAAATCTTGTCT+TGG 0.404879 3.2:+53176153 None:intergenic
GCGCTTCTGCTTCGTTCTGA+AGG 0.415834 3.2:-53177669 MS.gene05640:CDS
TCATACCCATAGAAAGATTC+CGG 0.424128 3.2:+53177625 None:intergenic
ATCCAACTAAACTTGGGGCT+TGG 0.430031 3.2:+53175421 None:intergenic
AATTTCGATTGTTCCTCTAC+TGG 0.431335 3.2:-53177735 MS.gene05640:CDS
CGCTTCTGCTTCGTTCTGAA+GGG 0.435644 3.2:-53177668 MS.gene05640:CDS
CTGAATATGATGCCATTGTT+AGG 0.450696 3.2:-53176082 MS.gene05640:CDS
TGTAAAGATCTTAGTAGCAT+TGG 0.452246 3.2:-53176032 MS.gene05640:CDS
GGCTAGAATCCATAGCTTGA+AGG 0.455099 3.2:+53177706 None:intergenic
TGCAGCTCCAATGTCACCCT+TGG 0.455509 3.2:+53175860 None:intergenic
ATCTATATCCAACTAAACTT+GGG 0.464393 3.2:+53175415 None:intergenic
TCAAGGTTCACTTCTCAAGA+AGG 0.468437 3.2:-53177793 MS.gene05640:CDS
AGTTGTCATCTCGGTTACTA+AGG 0.478522 3.2:-53175901 MS.gene05640:CDS
TTGTGTTGCAGTTGTCATCT+CGG 0.492719 3.2:-53175910 MS.gene05640:intron
TTGAGCATTATCGCTGTGAC+CGG 0.503477 3.2:-53177644 MS.gene05640:CDS
TCTATGACAGTAGCATCATC+AGG 0.509310 3.2:+53175635 None:intergenic
TGCCATCTGCTGAGTTTGCT+AGG 0.512820 3.2:-53176058 MS.gene05640:CDS
CAGACTGATGGTAACTGTGC+TGG 0.524507 3.2:+53175541 None:intergenic
ATGGCATCATATTCAGCCTC+CGG 0.535879 3.2:+53176089 None:intergenic
TGAGTACAAAATTGCTGAGA+TGG 0.536273 3.2:-53175495 MS.gene05640:CDS
CTTAGTAGCATTGGTGACAC+TGG 0.547229 3.2:-53176023 MS.gene05640:intron
GCTAGAATCCATAGCTTGAA+GGG 0.562764 3.2:+53177707 None:intergenic
ACTAGGGCTTTCGAACATGA+AGG 0.573205 3.2:+53177515 None:intergenic
TGTCATCTCGGTTACTAAGG+AGG 0.575341 3.2:-53175898 MS.gene05640:CDS
GTCATCTCGGTTACTAAGGA+GGG 0.577137 3.2:-53175897 MS.gene05640:CDS
TGTGACCGGAATCTTTCTAT+GGG 0.581805 3.2:-53177630 MS.gene05640:CDS
GCGAAGATGTTGAAGTGTGC+TGG 0.584665 3.2:-53177588 MS.gene05640:CDS
ATCCTAGCAAACTCAGCAGA+TGG 0.593618 3.2:+53176056 None:intergenic
ATTACTATTAAGGCTGACGA+TGG 0.597215 3.2:-53177552 MS.gene05640:CDS
GTATCTTAATGCAAATTGCA+AGG 0.597267 3.2:+53175595 None:intergenic
GCTGGACAAAGGAGTTGCCT+TGG 0.607604 3.2:+53175559 None:intergenic
GAAGCGCGACAAGAGCCACA+TGG 0.615310 3.2:+53177685 None:intergenic
TCTATATCCAACTAAACTTG+GGG 0.615964 3.2:+53175416 None:intergenic
TAGTTCATTTGACAGACTGA+TGG 0.616907 3.2:+53175529 None:intergenic
ATTCAGCCTCCGGAATTCCA+AGG 0.619118 3.2:+53176099 None:intergenic
AATGCAAATTGCAAGGACAC+AGG 0.621947 3.2:+53175602 None:intergenic
GAGTACAAAATTGCTGAGAT+GGG 0.628489 3.2:-53175494 MS.gene05640:CDS
ATGGTAACTGTGCTGGACAA+AGG 0.631448 3.2:+53175548 None:intergenic
GCAGAACACTACTGTGGACA+AGG 0.634025 3.2:-53175823 MS.gene05640:intron
TTACTATTAAGGCTGACGAT+GGG 0.635060 3.2:-53177551 MS.gene05640:CDS
AACTAGACGGAGTTCTAACA+TGG 0.638008 3.2:+53177815 None:intergenic
GACATTGATAGTGAGCACCT+TGG 0.640024 3.2:-53176116 MS.gene05640:CDS
AGCAGATGGCATCCTAACAA+TGG 0.641376 3.2:+53176070 None:intergenic
AGCTATGGATTCTAGCCATG+TGG 0.667722 3.2:-53177700 MS.gene05640:CDS
TTGAAGGGAGAAACCAGTAG+AGG 0.670541 3.2:+53177722 None:intergenic
TGAGCACCTTGGAATTCCGG+AGG 0.683837 3.2:-53176105 MS.gene05640:CDS
GAAGTGAACCTTGAACTAGA+CGG 0.688677 3.2:+53177802 None:intergenic
TTGCAGGCAGAACACTACTG+TGG 0.709888 3.2:-53175829 MS.gene05640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGTATTTGATAAATTTAA+GGG - chr3.2:53176905-53176924 MS.gene05640:intron 15.0%
!! TATTGTTTGATATAACATTA+TGG - chr3.2:53176463-53176482 MS.gene05640:intron 15.0%
!! TGATGTATTTGATAAATTTA+AGG - chr3.2:53176904-53176923 MS.gene05640:intron 15.0%
!!! AGATTTTAATTTGAAATGTT+AGG - chr3.2:53175912-53175931 MS.gene05640:intron 15.0%
!!! GATATCTATTTTCTTTATAT+TGG - chr3.2:53176118-53176137 MS.gene05640:CDS 15.0%
!!! GATTTTAATTTGAAATGTTA+GGG - chr3.2:53175913-53175932 MS.gene05640:intron 15.0%
!!! TTTTAATTGACATTTTTACA+TGG - chr3.2:53177557-53177576 MS.gene05640:CDS 15.0%
!! AGATTATAAAATCTCAAAAC+AGG + chr3.2:53176315-53176334 None:intergenic 20.0%
!! GATTATAAAATCTCAAAACA+GGG + chr3.2:53176314-53176333 None:intergenic 20.0%
!! TAACACTAAAACTAAAGAAT+TGG + chr3.2:53175768-53175787 None:intergenic 20.0%
!! TGATGATATCATTACTATTA+AGG - chr3.2:53175678-53175697 MS.gene05640:intron 20.0%
!! TGTTAAATTCTGTATGATTT+GGG - chr3.2:53176787-53176806 MS.gene05640:intron 20.0%
!!! ATGATTATTTTGGTGTTAAT+TGG - chr3.2:53175835-53175854 MS.gene05640:CDS 20.0%
!!! GATCTATGATTTGAATTTTA+GGG - chr3.2:53176256-53176275 MS.gene05640:intron 20.0%
!!! GTTTTTAATTGGGTTAATTA+GGG - chr3.2:53175794-53175813 MS.gene05640:intron 20.0%
!!! TCATTGTTGTATGATTATTT+TGG - chr3.2:53175825-53175844 MS.gene05640:CDS 20.0%
!!! TGATCTATGATTTGAATTTT+AGG - chr3.2:53176255-53176274 MS.gene05640:intron 20.0%
!!! TGATTATTTTGGTGTTAATT+GGG - chr3.2:53175836-53175855 MS.gene05640:CDS 20.0%
!!! TGTTAATTGATTGAATGTTT+TGG - chr3.2:53175881-53175900 MS.gene05640:CDS 20.0%
!!! TTTAGTTTTAGTGTTACTTA+GGG - chr3.2:53175772-53175791 MS.gene05640:intron 20.0%
!!! TTTTGGTATCTATTTTGTTA+TGG - chr3.2:53176664-53176683 MS.gene05640:intron 20.0%
! AAAATCAGAAATCTTGTCTT+GGG + chr3.2:53177089-53177108 None:intergenic 25.0%
! AAAGAAAACGAAACTTACTA+GGG + chr3.2:53175744-53175763 None:intergenic 25.0%
! ACAAATAACTTGAACTACAA+AGG + chr3.2:53176872-53176891 None:intergenic 25.0%
! ATGTTACGGTATCATATTTA+TGG - chr3.2:53176969-53176988 MS.gene05640:intron 25.0%
! GATACATTTGATCAATTTCA+GGG - chr3.2:53176597-53176616 MS.gene05640:intron 25.0%
! GGTCTATTTGATAAATTTCA+GGG - chr3.2:53176758-53176777 MS.gene05640:intron 25.0%
! GTGTTAAATTCTGTATGATT+TGG - chr3.2:53176786-53176805 MS.gene05640:intron 25.0%
! TAAAGAAAACGAAACTTACT+AGG + chr3.2:53175745-53175764 None:intergenic 25.0%
! TAATAACATATGAACCACAA+TGG + chr3.2:53177022-53177041 None:intergenic 25.0%
! TGATACATTTGATCAATTTC+AGG - chr3.2:53176596-53176615 MS.gene05640:intron 25.0%
! TGCAACAAAAATGAAAACAT+TGG + chr3.2:53176371-53176390 None:intergenic 25.0%
! TGGTCTATTTGATAAATTTC+AGG - chr3.2:53176757-53176776 MS.gene05640:intron 25.0%
!! AACAGTTACAAAAACAGTTT+TGG + chr3.2:53176168-53176187 None:intergenic 25.0%
!! AATTAGTTTGAAACCTACAA+GGG - chr3.2:53176052-53176071 MS.gene05640:CDS 25.0%
!! AGATTTTATAATCTTGCATG+TGG - chr3.2:53176321-53176340 MS.gene05640:intron 25.0%
!! ATACATGAATTCTTTTACCA+AGG - chr3.2:53177664-53177683 MS.gene05640:CDS 25.0%
!!! CTTTAGTTTTAGTGTTACTT+AGG - chr3.2:53175771-53175790 MS.gene05640:intron 25.0%
!!! GAACTTTTTTGCTAAAGAAT+GGG - chr3.2:53176214-53176233 MS.gene05640:intron 25.0%
!!! GATTATTTTGGTGTTAATTG+GGG - chr3.2:53175837-53175856 MS.gene05640:CDS 25.0%
!!! GGTTTTTAATTGGGTTAATT+AGG - chr3.2:53175793-53175812 MS.gene05640:intron 25.0%
!!! GTTACTTAGGGTTTTTAATT+GGG - chr3.2:53175784-53175803 MS.gene05640:intron 25.0%
!!! TGTTACTTAGGGTTTTTAAT+TGG - chr3.2:53175783-53175802 MS.gene05640:intron 25.0%
ATAACATGTAACCCTGAAAT+TGG + chr3.2:53176721-53176740 None:intergenic 30.0%
ATTTCAGGGTTACATGTTAT+CGG - chr3.2:53176721-53176740 MS.gene05640:intron 30.0%
CAAAATCAGAAATCTTGTCT+TGG + chr3.2:53177090-53177109 None:intergenic 30.0%
GTATCTTAATGCAAATTGCA+AGG + chr3.2:53177648-53177667 None:intergenic 30.0%
GTGTTAATTGATTGAATCGT+TGG - chr3.2:53176019-53176038 MS.gene05640:intron 30.0%
GTTCAATGTCAATTCTTTGT+GGG - chr3.2:53175993-53176012 MS.gene05640:intron 30.0%
TCAAACAATATGAACTACAG+TGG + chr3.2:53176453-53176472 None:intergenic 30.0%
TGTAAAGATCTTAGTAGCAT+TGG - chr3.2:53177208-53177227 MS.gene05640:intron 30.0%
TGTTCAATGTCAATTCTTTG+TGG - chr3.2:53175992-53176011 MS.gene05640:intron 30.0%
TTACGGTATCATATTTATGG+TGG - chr3.2:53176972-53176991 MS.gene05640:intron 30.0%
TTGTAGTTCCATATGTTATC+TGG - chr3.2:53176561-53176580 MS.gene05640:intron 30.0%
TTGTTTGGGTATCATAATTG+TGG - chr3.2:53176822-53176841 MS.gene05640:intron 30.0%
! AATTGGGTTAATTAGGGTTT+TGG - chr3.2:53175800-53175819 MS.gene05640:intron 30.0%
! AGGGTCTTTTACTCTTTTAA+TGG - chr3.2:53176071-53176090 MS.gene05640:CDS 30.0%
! ATTGGGTTAATTAGGGTTTT+GGG - chr3.2:53175801-53175820 MS.gene05640:intron 30.0%
! ATTTTGTACTCAACAACAAC+TGG + chr3.2:53177737-53177756 None:intergenic 30.0%
! ATTTTTGTTGCATGCTTAAC+TGG - chr3.2:53176379-53176398 MS.gene05640:intron 30.0%
! CACTTTTGTTCATCTGTTAT+AGG - chr3.2:53177244-53177263 MS.gene05640:intron 30.0%
! GAATTAGTTTGAAACCTACA+AGG - chr3.2:53176051-53176070 MS.gene05640:CDS 30.0%
! GATCACATTTTACAACCATA+GGG - chr3.2:53177460-53177479 MS.gene05640:intron 30.0%
! GGGTCTTTTACTCTTTTAAT+GGG - chr3.2:53176072-53176091 MS.gene05640:CDS 30.0%
! TCATCATCTTCCTCTATTTT+TGG + chr3.2:53177794-53177813 None:intergenic 30.0%
! TGATCACATTTTACAACCAT+AGG - chr3.2:53177459-53177478 MS.gene05640:intron 30.0%
!!! ATGCTAATTTCGTGCTATTT+TGG - chr3.2:53175955-53175974 MS.gene05640:intron 30.0%
!!! GGAACTTTTTTGCTAAAGAA+TGG - chr3.2:53176213-53176232 MS.gene05640:intron 30.0%
!!! TGCTAATTTCGTGCTATTTT+GGG - chr3.2:53175956-53175975 MS.gene05640:intron 30.0%
!!! TTTTACATGGTTGTTTTTGC+TGG - chr3.2:53177570-53177589 MS.gene05640:CDS 30.0%
AAAGAGTAAAAGACCCTTGT+AGG + chr3.2:53176068-53176087 None:intergenic 35.0%
AATTTCGATTGTTCCTCTAC+TGG - chr3.2:53175505-53175524 MS.gene05640:CDS 35.0%
ACGCTTATAAAAAGTCCCTA+TGG + chr3.2:53177478-53177497 None:intergenic 35.0%
ATTACTATTAAGGCTGACGA+TGG - chr3.2:53175688-53175707 MS.gene05640:intron 35.0%
CTGAATATGATGCCATTGTT+AGG - chr3.2:53177158-53177177 MS.gene05640:intron 35.0%
GAGTACAAAATTGCTGAGAT+GGG - chr3.2:53177746-53177765 MS.gene05640:CDS 35.0%
GGGTATGAATCTGAACAATA+TGG - chr3.2:53175630-53175649 MS.gene05640:CDS 35.0%
GGTATCACTTGTGACTTATT+GGG - chr3.2:53176993-53177012 MS.gene05640:intron 35.0%
TAGTTCATTTGACAGACTGA+TGG + chr3.2:53177714-53177733 None:intergenic 35.0%
TCATACCCATAGAAAGATTC+CGG + chr3.2:53175618-53175637 None:intergenic 35.0%
TGAGTACAAAATTGCTGAGA+TGG - chr3.2:53177745-53177764 MS.gene05640:CDS 35.0%
TGGTATCACTTGTGACTTAT+TGG - chr3.2:53176992-53177011 MS.gene05640:intron 35.0%
TTACTATTAAGGCTGACGAT+GGG - chr3.2:53175689-53175708 MS.gene05640:intron 35.0%
! GGACTTTTTATAAGCGTTAC+AGG - chr3.2:53177481-53177500 MS.gene05640:intron 35.0%
! TTCACTTCTCAAGAAGGTTT+TGG - chr3.2:53175453-53175472 MS.gene05640:CDS 35.0%
!! CAGATTTTAGAAGCTGAGTA+GGG - chr3.2:53176192-53176211 MS.gene05640:intron 35.0%
!! GTTTTAGTGTTCAATACTGC+AGG - chr3.2:53176619-53176638 MS.gene05640:intron 35.0%
!! TCAGATTTTAGAAGCTGAGT+AGG - chr3.2:53176191-53176210 MS.gene05640:intron 35.0%
!! TTTGGTGTTAATTGGGGTTA+GGG - chr3.2:53175843-53175862 MS.gene05640:CDS 35.0%
!!! TGATTTTGAGATGAAGCTGA+TGG - chr3.2:53177102-53177121 MS.gene05640:intron 35.0%
!!! TTCGTGCTATTTTGGGTTTA+GGG - chr3.2:53175963-53175982 MS.gene05640:intron 35.0%
!!! TTTCGTGCTATTTTGGGTTT+AGG - chr3.2:53175962-53175981 MS.gene05640:intron 35.0%
!!! TTTTGGTGTTAATTGGGGTT+AGG - chr3.2:53175842-53175861 MS.gene05640:CDS 35.0%
AATGCAAATTGCAAGGACAC+AGG + chr3.2:53177641-53177660 None:intergenic 40.0%
ACTAAGTGGGATCAGTTACA+TGG + chr3.2:53176500-53176519 None:intergenic 40.0%
AGCATGCACCAGATAACATA+TGG + chr3.2:53176572-53176591 None:intergenic 40.0%
AGTTGTCATCTCGGTTACTA+AGG - chr3.2:53177339-53177358 MS.gene05640:intron 40.0%
ATGTAACTGATCCCACTTAG+TGG - chr3.2:53176499-53176518 MS.gene05640:intron 40.0%
GAAGTGAACCTTGAACTAGA+CGG + chr3.2:53175441-53175460 None:intergenic 40.0%
GCTAGAATCCATAGCTTGAA+GGG + chr3.2:53175536-53175555 None:intergenic 40.0%
GGGTTATGTTAGGTTCTATC+TGG - chr3.2:53177766-53177785 MS.gene05640:CDS 40.0%
TAGCCACACAAAAACAAGTC+AGG + chr3.2:53177056-53177075 None:intergenic 40.0%
TCAAGGTTCACTTCTCAAGA+AGG - chr3.2:53175447-53175466 MS.gene05640:CDS 40.0%
TCTATGACAGTAGCATCATC+AGG + chr3.2:53177608-53177627 None:intergenic 40.0%
TGATACCCAAACAAGAACAG+AGG + chr3.2:53176816-53176835 None:intergenic 40.0%
TGTAACTGATCCCACTTAGT+GGG - chr3.2:53176500-53176519 MS.gene05640:intron 40.0%
TGTCTGCTCTGTTCATGTTA+CGG - chr3.2:53176955-53176974 MS.gene05640:intron 40.0%
TGTGACCGGAATCTTTCTAT+GGG - chr3.2:53175610-53175629 MS.gene05640:CDS 40.0%
TGTTAATTGGGGTTAGGGTT+TGG - chr3.2:53175848-53175867 MS.gene05640:CDS 40.0%
TTGTGTTGCAGTTGTCATCT+CGG - chr3.2:53177330-53177349 MS.gene05640:intron 40.0%
! CAAGTCTTATCCCACTAAGT+GGG + chr3.2:53176513-53176532 None:intergenic 40.0%
! CTATCTGGCTCCAAAAATAG+AGG - chr3.2:53177781-53177800 MS.gene05640:CDS 40.0%
! GGTATCCTCTGTTCTTGTTT+GGG - chr3.2:53176808-53176827 MS.gene05640:intron 40.0%
! GGTGTGAAGTTTTCAACCAA+GGG - chr3.2:53177364-53177383 MS.gene05640:intron 40.0%
! TGCTTAACTGGTCTAGAGTT+TGG - chr3.2:53176391-53176410 MS.gene05640:intron 40.0%
! TGTGTGCTCTGTTCATGTTT+TGG - chr3.2:53176647-53176666 MS.gene05640:intron 40.0%
! TTAGAACTCCGTCTAGTTCA+AGG - chr3.2:53175430-53175449 MS.gene05640:CDS 40.0%
! TTTTCAACCAAGGGTGACAT+TGG - chr3.2:53177373-53177392 MS.gene05640:intron 40.0%
!! CTAGCTTTTGGCCAATTTCA+GGG - chr3.2:53176707-53176726 MS.gene05640:intron 40.0%
!! TTGCTGAGATGGGTTATGTT+AGG - chr3.2:53177756-53177775 MS.gene05640:CDS 40.0%
!!! ATGACTTGTGAGCTAGCTTT+TGG - chr3.2:53176695-53176714 MS.gene05640:intron 40.0%
!!! CTATTTTGGGTTTAGGGCTT+TGG - chr3.2:53175969-53175988 MS.gene05640:intron 40.0%
!!! GAAGGTTTTGGAATCGATCA+AGG - chr3.2:53175465-53175484 MS.gene05640:CDS 40.0%
!!! GATCCTGACTTGTTTTTGTG+TGG - chr3.2:53177050-53177069 MS.gene05640:intron 40.0%
ACTAGGGCTTTCGAACATGA+AGG + chr3.2:53175728-53175747 None:intergenic 45.0%
AGCAGATGGCATCCTAACAA+TGG + chr3.2:53177173-53177192 None:intergenic 45.0%
AGCTATGGATTCTAGCCATG+TGG - chr3.2:53175540-53175559 MS.gene05640:CDS 45.0%
ATCCTAGCAAACTCAGCAGA+TGG + chr3.2:53177187-53177206 None:intergenic 45.0%
ATGGCATCATATTCAGCCTC+CGG + chr3.2:53177154-53177173 None:intergenic 45.0%
ATGGTAACTGTGCTGGACAA+AGG + chr3.2:53177695-53177714 None:intergenic 45.0%
CCACTTAGTGGGATAAGACT+TGG - chr3.2:53176511-53176530 MS.gene05640:intron 45.0%
CTGTGACCGGAATCTTTCTA+TGG - chr3.2:53175609-53175628 MS.gene05640:CDS 45.0%
GACTTATTGGGTAGCCATTG+TGG - chr3.2:53177005-53177024 MS.gene05640:intron 45.0%
GGCTAGAATCCATAGCTTGA+AGG + chr3.2:53175537-53175556 None:intergenic 45.0%
GGGTATCCTCTGTTCTTGTT+TGG - chr3.2:53176807-53176826 MS.gene05640:intron 45.0%
GTCATCTCGGTTACTAAGGA+GGG - chr3.2:53177343-53177362 MS.gene05640:intron 45.0%
TAGTGAGCACCTTGGAATTC+CGG - chr3.2:53177132-53177151 MS.gene05640:intron 45.0%
TGGTTTCTCCCTTCAAGCTA+TGG - chr3.2:53175525-53175544 MS.gene05640:CDS 45.0%
TGTCATCTCGGTTACTAAGG+AGG - chr3.2:53177342-53177361 MS.gene05640:intron 45.0%
TTGAAGGGAGAAACCAGTAG+AGG + chr3.2:53175521-53175540 None:intergenic 45.0%
TTGAGCATTATCGCTGTGAC+CGG - chr3.2:53175596-53175615 MS.gene05640:CDS 45.0%
! ATTGGGGTTAGGGTTTGGTT+TGG - chr3.2:53175853-53175872 MS.gene05640:CDS 45.0%
! CCAAGTCTTATCCCACTAAG+TGG + chr3.2:53176514-53176533 None:intergenic 45.0%
! GAGCTGCAAACATAGTTTGC+AGG - chr3.2:53177395-53177414 MS.gene05640:intron 45.0%
! GGGTGTGAAGTTTTCAACCA+AGG - chr3.2:53177363-53177382 MS.gene05640:intron 45.0%
! TTATCGGTTGCGTGCTTAAC+TGG - chr3.2:53176737-53176756 MS.gene05640:intron 45.0%
! TTGGGGTTAGGGTTTGGTTT+GGG - chr3.2:53175854-53175873 MS.gene05640:CDS 45.0%
!! CTTAGTAGCATTGGTGACAC+TGG - chr3.2:53177217-53177236 MS.gene05640:intron 45.0%
!! GACATTGATAGTGAGCACCT+TGG - chr3.2:53177124-53177143 MS.gene05640:intron 45.0%
!!! GCTAGCTTTTGGCCAATTTC+AGG - chr3.2:53176706-53176725 MS.gene05640:intron 45.0%
ATTCAGCCTCCGGAATTCCA+AGG + chr3.2:53177144-53177163 None:intergenic 50.0%
CAGACTGATGGTAACTGTGC+TGG + chr3.2:53177702-53177721 None:intergenic 50.0%
GCAGAACACTACTGTGGACA+AGG - chr3.2:53177417-53177436 MS.gene05640:intron 50.0%
GCGAAGATGTTGAAGTGTGC+TGG - chr3.2:53175652-53175671 MS.gene05640:intron 50.0%
TTGCAGGCAGAACACTACTG+TGG - chr3.2:53177411-53177430 MS.gene05640:intron 50.0%
! CGCTTCTGCTTCGTTCTGAA+GGG - chr3.2:53175572-53175591 MS.gene05640:CDS 50.0%
! TGCCATCTGCTGAGTTTGCT+AGG - chr3.2:53177182-53177201 MS.gene05640:intron 50.0%
!! TGGGGTTAGGGTTTGGTTTG+GGG - chr3.2:53175855-53175874 MS.gene05640:CDS 50.0%
GCGCTTCTGCTTCGTTCTGA+AGG - chr3.2:53175571-53175590 MS.gene05640:CDS 55.0%
GCTGGACAAAGGAGTTGCCT+TGG + chr3.2:53177684-53177703 None:intergenic 55.0%
TGAGCACCTTGGAATTCCGG+AGG - chr3.2:53177135-53177154 MS.gene05640:intron 55.0%
TGCAGCTCCAATGTCACCCT+TGG + chr3.2:53177383-53177402 None:intergenic 55.0%
GAAGCGCGACAAGAGCCACA+TGG + chr3.2:53175558-53175577 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 53175427 53177835 53175427 ID=MS.gene05640
chr3.2 mRNA 53175427 53177835 53175427 ID=MS.gene05640.t1;Parent=MS.gene05640
chr3.2 exon 53177517 53177835 53177517 ID=MS.gene05640.t1.exon1;Parent=MS.gene05640.t1
chr3.2 CDS 53177517 53177835 53177517 ID=cds.MS.gene05640.t1;Parent=MS.gene05640.t1
chr3.2 exon 53176024 53176176 53176024 ID=MS.gene05640.t1.exon2;Parent=MS.gene05640.t1
chr3.2 CDS 53176024 53176176 53176024 ID=cds.MS.gene05640.t1;Parent=MS.gene05640.t1
chr3.2 exon 53175824 53175921 53175824 ID=MS.gene05640.t1.exon3;Parent=MS.gene05640.t1
chr3.2 CDS 53175824 53175921 53175824 ID=cds.MS.gene05640.t1;Parent=MS.gene05640.t1
chr3.2 exon 53175427 53175657 53175427 ID=MS.gene05640.t1.exon4;Parent=MS.gene05640.t1
chr3.2 CDS 53175427 53175657 53175427 ID=cds.MS.gene05640.t1;Parent=MS.gene05640.t1
Gene Sequence

>MS.gene05640

ATGTTAGAACTCCGTCTAGTTCAAGGTTCACTTCTCAAGAAGGTTTTGGAATCGATCAAGGAACTCGTCAACGATGCAAATTTCGATTGTTCCTCTACTGGTTTCTCCCTTCAAGCTATGGATTCTAGCCATGTGGCTCTTGTCGCGCTTCTGCTTCGTTCTGAAGGGTTTGAGCATTATCGCTGTGACCGGAATCTTTCTATGGGTATGAATCTGAACAATATGGCGAAGATGTTGAAGTGTGCTGGTAATGATGATATCATTACTATTAAGGCTGACGATGGGAGTGATACTGTTACCTTCATGTTCGAAAGCCCTAGTAAGTTTCGTTTTCTTTACCAATTCTTTAGTTTTAGTGTTACTTAGGGTTTTTAATTGGGTTAATTAGGGTTTTGGGTTCATTGTTGTATGATTATTTTGGTGTTAATTGGGGTTAGGGTTTGGTTTGGGGTTGTGTTAATTGATTGAATGTTTTGGTTTCTGTCAGATTTTAATTTGAAATGTTAGGGTTTAGTGTTAATTGATTGAATGCTAATTTCGTGCTATTTTGGGTTTAGGGCTTTGGTGTTCAATGTCAATTCTTTGTGGGATTGTGTTAATTGATTGAATCGTTGGTTTCTCTTTGAATTAGTTTGAAACCTACAAGGGTCTTTTACTCTTTTAATGGGTTTAGTGTTGAAATTTCATGTCTGATATCTATTTTCTTTATATTGGAGTAGTTATTCTTTTTTCTCATTTCCAAAACTGTTTTTGTAACTGTTCTTTCAGATTTTAGAAGCTGAGTAGGGAACTTTTTTGCTAAAGAATGGGTTTTGTTGCATGCTTAACTGATCTATGATTTGAATTTTAGGGTTTATTGTTTAATTCTGTAATATTTGTATGTGCCCTGTTTTGAGATTTTATAATCTTGCATGTGGATTAAAGAACATATGTTCTTTTTACCAATGTTTTCATTTTTGTTGCATGCTTAACTGGTCTAGAGTTTGGTGTTTGATGTTGCATCACTTATGACTTATTAGTTAGCCACTGTAGTTCATATTGTTTGATATAACATTATGGCGTAATTTGATCCATGTAACTGATCCCACTTAGTGGGATAAGACTTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTAGTTCCATATGTTATCTGGTGCATGCTTAACTGATACATTTGATCAATTTCAGGGTTTTAGTGTTCAATACTGCAGGATTTGTGTGTGCTCTGTTCATGTTTTGGTATCTATTTTGTTATGGTGTCACTTATGACTTGTGAGCTAGCTTTTGGCCAATTTCAGGGTTACATGTTATCGGTTGCGTGCTTAACTGGTCTATTTGATAAATTTCAGGGTTTTAGTGTTAAATTCTGTATGATTTGGGTATCCTCTGTTCTTGTTTGGGTATCATAATTGTGGTGTCACTTATGAATTAAGAGTTAGCCTTTGTAGTTCAAGTTATTTGTTGTATGCTTAACTGATGTATTTGATAAATTTAAGGGTTTCAATGTTTAATTCTGTAAGATTTATGTCTGCTCTGTTCATGTTACGGTATCATATTTATGGTGGTATCACTTGTGACTTATTGGGTAGCCATTGTGGTTCATATGTTATTATAGTGTAAGATCCTGACTTGTTTTTGTGTGGCTATGTGATGAAGCCCAAGACAAGATTTCTGATTTTGAGATGAAGCTGATGGACATTGATAGTGAGCACCTTGGAATTCCGGAGGCTGAATATGATGCCATTGTTAGGATGCCATCTGCTGAGTTTGCTAGGATTTGTAAAGATCTTAGTAGCATTGGTGACACTGGTAATCACTTTTGTTCATCTGTTATAGGATTTTCTTCTAATGCTTGACTGTTCTTTTGAGTGTCGTGTTGATTAATATTTGTAATTTGCTGTTGTGTTGCAGTTGTCATCTCGGTTACTAAGGAGGGTGTGAAGTTTTCAACCAAGGGTGACATTGGAGCTGCAAACATAGTTTGCAGGCAGAACACTACTGTGGACAAGGTGAGATATTGATTCATTTTTGATCACATTTTACAACCATAGGGACTTTTTATAAGCGTTACAGGCTTGTAGCTAAAATGCTAAATGTGTTTTATTTGTGTTTGATTGTTGAATTTGATTTTAATTGACATTTTTACATGGTTGTTTTTGCTGGTTGATGTTGCAGCCTGATGATGCTACTGTCATAGAGATGAAAGAGCCTGTGTCCTTGCAATTTGCATTAAGATACATGAATTCTTTTACCAAGGCAACTCCTTTGTCCAGCACAGTTACCATCAGTCTGTCAAATGAACTACCAGTTGTTGTTGAGTACAAAATTGCTGAGATGGGTTATGTTAGGTTCTATCTGGCTCCAAAAATAGAGGAAGATGATGAAGAAACCAAGCCCCAAGTTTAG

Protein sequence

>MS.gene05640.t1

MLELRLVQGSLLKKVLESIKELVNDANFDCSSTGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYDAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGAANIVCRQNTTVDKPDDATVIEMKEPVSLQFALRYMNSFTKATPLSSTVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDDEETKPQV