AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71566

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71566.t1 MTR_1g105860 90.566 265 25 0 1 265 18 282 0.0 505
MS.gene71566.t1 MTR_1g105860 90.566 265 25 0 1 265 1 265 0.0 504
MS.gene71566.t1 MTR_1g105855 79.197 274 47 2 1 265 18 290 1.57e-158 442
MS.gene71566.t1 MTR_1g105885 71.094 256 68 4 1 255 1 251 1.87e-132 375
MS.gene71566.t1 MTR_1g105850 62.869 237 88 0 22 258 25 261 8.90e-110 319
MS.gene71566.t1 MTR_1g021638 60.870 253 96 2 6 255 1 253 2.58e-106 311
MS.gene71566.t1 MTR_1g021632 55.094 265 114 3 6 265 1 265 9.74e-96 295
MS.gene71566.t1 MTR_0341s0010 54.475 257 110 4 6 255 1 257 4.38e-93 277
MS.gene71566.t1 MTR_1g021642 55.385 260 109 4 1 254 8 266 3.92e-92 286
MS.gene71566.t1 MTR_1g021610 54.032 248 110 2 14 258 10 256 5.82e-92 285
MS.gene71566.t1 MTR_1g021635 55.118 254 111 2 6 256 1 254 1.02e-91 285
MS.gene71566.t1 MTR_1g021630 54.475 257 110 4 6 255 1 257 5.70e-89 277
MS.gene71566.t1 MTR_1g105820 50.193 259 117 6 4 260 8 256 2.56e-79 252
MS.gene71566.t1 MTR_1g105755 48.361 244 117 5 13 256 15 249 3.28e-72 232
MS.gene71566.t1 MTR_5g068260 48.780 246 118 5 10 255 8 245 4.76e-70 228
MS.gene71566.t1 MTR_5g068250 50.909 220 104 3 40 259 39 254 1.53e-66 216
MS.gene71566.t1 MTR_1g105750 48.828 256 122 5 2 256 6 253 1.95e-63 210
MS.gene71566.t1 MTR_5g068190 46.586 249 120 6 10 254 8 247 1.27e-62 208
MS.gene71566.t1 MTR_1g105800 47.718 241 117 5 16 256 19 250 4.26e-61 204
MS.gene71566.t1 MTR_0341s0020 44.747 257 104 5 6 255 1 226 1.80e-60 202
MS.gene71566.t1 MTR_5g065130 42.802 257 128 7 11 262 6 248 2.38e-54 186
MS.gene71566.t1 MTR_1g105840 40.467 257 142 4 6 262 1 246 3.30e-53 183
MS.gene71566.t1 MTR_1g105710 43.243 222 110 9 43 255 33 247 4.79e-44 158
MS.gene71566.t1 MTR_1g105700 37.903 248 140 6 24 263 19 260 5.06e-44 158
MS.gene71566.t1 MTR_1g105830 37.008 254 136 7 9 262 29 258 7.45e-44 150
MS.gene71566.t1 MTR_2g088980 33.200 250 148 9 1 248 7 239 1.17e-34 125
MS.gene71566.t1 MTR_1g104890 33.482 224 138 6 35 255 44 259 4.83e-34 125
MS.gene71566.t1 MTR_1g104890 34.112 214 133 5 45 255 51 259 5.49e-33 125
MS.gene71566.t1 MTR_7g052020 31.020 245 157 6 12 256 7 239 1.11e-32 120
MS.gene71566.t1 MTR_1g104890 33.482 224 138 6 35 255 44 259 2.36e-32 124
MS.gene71566.t1 MTR_1g104890 33.482 224 138 6 35 255 44 259 3.78e-32 124
MS.gene71566.t1 MTR_1g105640 34.101 217 134 7 44 255 41 253 2.79e-31 122
MS.gene71566.t1 MTR_1g105640 34.101 217 134 7 44 255 41 253 2.81e-31 122
MS.gene71566.t1 MTR_1g105640 34.101 217 134 7 44 255 41 253 2.93e-31 122
MS.gene71566.t1 MTR_5g068290 48.413 126 62 3 130 255 1 123 3.00e-31 119
MS.gene71566.t1 MTR_6g463660 32.549 255 159 6 12 261 11 257 2.05e-30 119
MS.gene71566.t1 MTR_6g463660 29.412 238 149 10 21 254 268 490 6.21e-20 89.4
MS.gene71566.t1 MTR_6g057680 32.549 255 159 6 12 261 11 257 2.05e-30 119
MS.gene71566.t1 MTR_6g057680 29.412 238 149 10 21 254 268 490 6.21e-20 89.4
MS.gene71566.t1 MTR_6g463830 32.157 255 159 8 8 255 4 251 6.89e-29 115
MS.gene71566.t1 MTR_6g463830 33.673 196 114 8 68 254 301 489 3.22e-17 81.6
MS.gene71566.t1 MTR_6g463400 31.225 253 163 6 13 261 11 256 1.66e-28 113
MS.gene71566.t1 MTR_6g463400 33.005 203 126 7 54 254 296 490 6.22e-25 103
MS.gene71566.t1 MTR_5g005480 32.114 246 151 8 13 254 16 249 7.11e-28 112
MS.gene71566.t1 MTR_1g105655 33.184 223 138 7 40 258 42 257 1.57e-27 111
MS.gene71566.t1 MTR_0007s0020 31.274 259 157 8 8 255 4 252 6.57e-27 109
MS.gene71566.t1 MTR_0007s0020 32.474 194 118 7 74 259 309 497 2.38e-19 87.8
MS.gene71566.t1 MTR_6g055960 28.968 252 160 7 9 255 7 244 1.11e-26 109
MS.gene71566.t1 MTR_6g055960 31.863 204 129 7 53 254 288 483 2.90e-20 90.5
MS.gene71566.t1 MTR_1g105650 30.252 238 155 6 21 255 25 254 1.42e-26 108
MS.gene71566.t1 MTR_8g028065 30.400 250 156 8 9 254 7 242 1.45e-26 108
MS.gene71566.t1 MTR_8g028065 28.761 226 142 9 36 255 276 488 2.91e-17 81.6
MS.gene71566.t1 MTR_5g005450 31.651 218 128 9 45 254 41 245 1.92e-26 108
MS.gene71566.t1 MTR_1g105585 31.474 251 158 8 4 248 6 248 7.29e-26 106
MS.gene71566.t1 MTR_1g105725 27.308 260 169 9 6 254 17 267 3.84e-25 104
MS.gene71566.t1 MTR_3g011890 27.650 217 149 5 50 265 46 255 3.98e-25 100
MS.gene71566.t1 MTR_6g463700 33.871 186 114 6 72 254 73 252 4.26e-25 104
MS.gene71566.t1 MTR_6g057750 29.150 247 164 7 11 254 14 252 4.84e-25 104
MS.gene71566.t1 MTR_6g057750 25.600 250 164 10 15 255 266 502 2.14e-17 82.0
MS.gene71566.t1 MTR_2g088930 30.204 245 153 8 6 248 11 239 8.17e-25 99.4
MS.gene71566.t1 MTR_1g105615 31.250 256 157 10 9 255 8 253 1.65e-24 102
MS.gene71566.t1 MTR_1g105595 32.536 209 131 7 51 255 52 254 3.19e-24 102
MS.gene71566.t1 MTR_1g105595 32.536 209 131 7 51 255 52 254 3.51e-24 101
MS.gene71566.t1 MTR_5g005530 33.333 183 117 3 72 254 70 247 4.76e-24 101
MS.gene71566.t1 MTR_6g057770 31.797 217 139 5 44 255 40 252 1.32e-23 100
MS.gene71566.t1 MTR_6g057770 31.731 208 132 7 54 259 297 496 7.48e-19 86.3
MS.gene71566.t1 MTR_6g463710 31.797 217 139 5 44 255 40 252 1.45e-23 100
MS.gene71566.t1 MTR_6g463710 31.731 208 132 7 54 259 297 496 7.85e-19 86.3
MS.gene71566.t1 MTR_5g005520 31.481 216 137 7 45 254 36 246 2.42e-23 99.4
MS.gene71566.t1 MTR_5g005520 31.481 216 137 7 45 254 41 251 2.91e-23 99.0
MS.gene71566.t1 MTR_3g011910 31.818 242 150 7 14 249 22 254 1.48e-22 96.7
MS.gene71566.t1 MTR_3g011910 33.491 212 132 5 41 249 23 228 4.39e-22 95.5
MS.gene71566.t1 MTR_6g053000 31.429 245 151 10 15 254 11 243 1.80e-21 94.0
MS.gene71566.t1 MTR_8g041650 26.894 264 179 8 4 264 6 258 3.33e-21 93.2
MS.gene71566.t1 MTR_0074s0060 27.941 272 149 9 8 264 4 243 5.96e-20 89.4
MS.gene71566.t1 MTR_8g041710 25.000 260 179 8 9 265 7 253 4.09e-19 87.0
MS.gene71566.t1 MTR_1g105600 33.491 212 124 9 51 254 307 509 8.34e-19 86.3
MS.gene71566.t1 MTR_1g105600 29.208 202 129 8 65 256 69 266 1.20e-12 68.2
MS.gene71566.t1 MTR_8g041910 26.642 274 164 11 9 265 13 266 2.34e-18 84.7
MS.gene71566.t1 MTR_8g041880 31.156 199 121 9 65 255 58 248 3.09e-18 84.3
MS.gene71566.t1 MTR_8g041870 28.796 191 122 7 80 265 77 258 9.66e-18 82.8
MS.gene71566.t1 MTR_3g079850 29.187 209 127 7 68 259 63 267 1.56e-17 82.0
MS.gene71566.t1 MTR_3g079850 29.187 209 127 7 68 259 63 267 2.12e-17 82.0
MS.gene71566.t1 MTR_8g041690 32.240 183 113 6 75 255 73 246 3.96e-17 81.3
MS.gene71566.t1 MTR_2g010730 24.906 265 180 8 6 262 1 254 1.22e-16 78.2
MS.gene71566.t1 MTR_1g105715 55.172 58 26 0 65 122 4 61 1.69e-16 73.2
MS.gene71566.t1 MTR_2g010710 25.660 265 173 8 6 262 1 249 6.04e-16 75.9
MS.gene71566.t1 MTR_0264s0030 33.149 181 108 8 81 254 70 244 5.45e-14 70.9
MS.gene71566.t1 MTR_1g105720 54.545 55 25 0 65 119 9 63 1.14e-12 62.4
MS.gene71566.t1 MTR_8g041890 27.411 197 130 7 71 265 73 258 1.71e-12 67.4
MS.gene71566.t1 MTR_8g041660 21.930 228 164 8 32 255 30 247 3.61e-12 66.6
MS.gene71566.t1 MTR_8g041660 21.930 228 164 8 32 255 30 247 3.87e-12 66.2
MS.gene71566.t1 MTR_6g057440 29.932 147 92 5 11 152 7 147 2.39e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71566.t1 AT4G21410 39.035 228 132 5 41 265 38 261 4.70e-43 153
MS.gene71566.t1 AT4G21410 39.035 228 132 5 41 265 38 261 2.27e-42 153
MS.gene71566.t1 AT4G38830 36.818 220 133 5 39 256 32 247 1.42e-37 140
MS.gene71566.t1 AT4G21400 33.333 255 163 5 13 265 14 263 2.88e-37 137
MS.gene71566.t1 AT4G21400 33.333 255 163 5 13 265 14 263 4.38e-37 137
MS.gene71566.t1 AT4G21400 33.333 255 163 5 13 265 14 263 4.38e-37 137
MS.gene71566.t1 AT4G21400 33.333 255 163 5 13 265 14 263 4.38e-37 137
MS.gene71566.t1 AT4G21400 33.333 255 163 5 13 265 14 263 6.45e-37 138
MS.gene71566.t1 AT4G21400 33.333 255 163 5 13 265 14 263 8.26e-37 138
MS.gene71566.t1 AT3G22060 32.083 240 155 4 9 248 13 244 2.69e-36 129
MS.gene71566.t1 AT4G05200 34.008 247 149 8 13 254 29 266 5.28e-35 133
MS.gene71566.t1 AT4G05200 34.008 247 149 8 13 254 11 248 5.49e-35 132
MS.gene71566.t1 AT4G21400 35.567 194 120 4 74 265 47 237 1.75e-32 125
MS.gene71566.t1 AT4G00970 36.406 217 129 5 42 254 51 262 1.57e-31 122
MS.gene71566.t1 AT4G00970 36.406 217 129 5 42 254 51 262 2.26e-31 122
MS.gene71566.t1 AT4G23170 37.264 212 118 8 49 254 43 245 2.99e-31 117
MS.gene71566.t1 AT4G21230 36.073 219 121 8 41 254 37 241 3.59e-31 122
MS.gene71566.t1 AT4G23150 34.310 239 144 7 24 258 20 249 4.14e-31 121
MS.gene71566.t1 AT4G23220 30.222 225 154 3 43 265 29 252 6.90e-31 121
MS.gene71566.t1 AT4G23180 35.565 239 138 9 24 258 31 257 1.55e-30 119
MS.gene71566.t1 AT4G23280 36.449 214 124 6 44 254 38 242 1.79e-30 120
MS.gene71566.t1 AT4G23280 36.449 214 124 6 44 254 38 242 1.89e-30 119
MS.gene71566.t1 AT4G23280 36.449 214 124 6 44 254 38 242 1.91e-30 120
MS.gene71566.t1 AT4G23180 35.565 239 138 9 24 258 31 257 3.29e-30 119
MS.gene71566.t1 AT4G23180 35.565 239 138 9 24 258 31 257 3.58e-30 119
MS.gene71566.t1 AT4G23160 36.771 223 128 7 41 258 632 846 6.34e-30 118
MS.gene71566.t1 AT4G23160 36.771 223 128 7 41 258 632 846 6.34e-30 118
MS.gene71566.t1 AT4G23160 36.771 223 128 7 41 258 52 266 7.26e-30 118
MS.gene71566.t1 AT4G23130 34.615 208 125 7 51 255 46 245 1.87e-28 114
MS.gene71566.t1 AT4G23130 34.615 208 125 7 51 255 46 245 2.14e-28 114
MS.gene71566.t1 AT4G23130 34.615 208 125 7 51 255 46 245 2.40e-28 114
MS.gene71566.t1 AT4G23200 28.571 210 144 2 45 248 30 239 4.94e-28 112
MS.gene71566.t1 AT4G23200 28.571 210 144 2 45 248 30 239 1.17e-27 112
MS.gene71566.t1 AT4G23210 31.250 224 133 6 40 248 29 246 1.69e-27 111
MS.gene71566.t1 AT4G23300 30.620 258 146 8 6 248 7 246 1.71e-27 111
MS.gene71566.t1 AT4G23210 31.250 224 133 6 40 248 29 246 1.76e-27 110
MS.gene71566.t1 AT4G23210 31.250 224 133 6 40 248 29 246 1.77e-27 110
MS.gene71566.t1 AT4G23210 31.250 224 133 6 40 248 29 246 1.77e-27 110
MS.gene71566.t1 AT4G23210 31.278 227 129 6 40 248 29 246 2.14e-27 110
MS.gene71566.t1 AT4G23140 35.176 199 115 6 65 258 61 250 2.74e-27 110
MS.gene71566.t1 AT4G23140 35.176 199 115 6 65 258 61 250 2.83e-27 110
MS.gene71566.t1 AT2G31620 32.143 224 137 7 40 256 40 255 3.97e-27 105
MS.gene71566.t1 AT4G11521 28.000 225 149 3 32 248 18 237 6.53e-26 102
MS.gene71566.t1 AT3G45860 35.747 221 125 8 44 258 42 251 7.60e-26 106
MS.gene71566.t1 AT4G11460 30.734 218 136 5 43 248 32 246 9.28e-26 106
MS.gene71566.t1 AT4G11460 30.734 218 136 5 43 248 32 246 1.10e-25 106
MS.gene71566.t1 AT4G11530 26.977 215 146 3 43 248 30 242 1.54e-25 105
MS.gene71566.t1 AT3G58310 26.971 241 170 4 9 248 14 249 7.97e-25 99.8
MS.gene71566.t1 AT4G20640 28.916 249 166 5 5 248 7 249 3.31e-24 98.2
MS.gene71566.t1 AT4G20580 28.916 249 166 5 5 248 7 249 3.31e-24 98.2
MS.gene71566.t1 AT4G20610 28.916 249 166 5 5 248 7 249 3.31e-24 98.2
MS.gene71566.t1 AT4G20630 28.916 249 166 5 5 248 7 249 3.31e-24 98.2
MS.gene71566.t1 AT4G20620 28.916 249 166 5 5 248 7 249 3.31e-24 98.2
MS.gene71566.t1 AT4G20590 28.916 249 166 5 5 248 7 249 3.31e-24 98.2
MS.gene71566.t1 AT4G20600 28.916 249 166 5 5 248 7 249 3.31e-24 98.2
MS.gene71566.t1 AT4G20670 28.916 249 166 5 5 248 7 249 4.22e-24 98.2
MS.gene71566.t1 AT4G20570 28.916 249 166 5 5 248 21 263 4.69e-24 98.2
MS.gene71566.t1 AT4G20560 28.916 249 166 5 5 248 21 263 4.69e-24 98.2
MS.gene71566.t1 AT4G20645 28.916 249 166 5 5 248 21 263 4.69e-24 98.2
MS.gene71566.t1 AT4G20550 28.916 249 166 5 5 248 21 263 4.69e-24 98.2
MS.gene71566.t1 AT4G20530 28.916 249 166 5 5 248 21 263 4.69e-24 98.2
MS.gene71566.t1 AT4G20540 28.916 249 166 5 5 248 21 263 4.69e-24 98.2
MS.gene71566.t1 AT4G23230 32.692 208 127 7 51 254 43 241 1.05e-23 100
MS.gene71566.t1 AT3G21960 27.888 251 170 6 3 248 11 255 1.41e-23 96.7
MS.gene71566.t1 AT3G21990 28.112 249 168 5 5 248 7 249 2.14e-23 95.9
MS.gene71566.t1 AT4G23190 30.455 220 140 6 39 248 28 244 2.44e-23 99.4
MS.gene71566.t1 AT4G23190 30.455 220 140 6 39 248 28 244 2.63e-23 99.4
MS.gene71566.t1 AT4G23270 34.946 186 110 7 71 254 64 240 2.71e-23 99.4
MS.gene71566.t1 AT4G23270 34.946 186 110 7 71 254 64 240 2.71e-23 99.4
MS.gene71566.t1 AT4G23270 34.946 186 110 7 71 254 64 240 2.77e-23 99.4
MS.gene71566.t1 AT5G41290 27.869 244 163 6 11 249 8 243 1.36e-22 94.4
MS.gene71566.t1 AT4G21410 40.580 138 78 3 130 265 1 136 2.92e-22 96.3
MS.gene71566.t1 AT4G04500 31.132 212 131 5 57 255 45 254 3.26e-22 95.9
MS.gene71566.t1 AT4G04500 31.132 212 131 5 57 255 45 254 3.26e-22 95.9
MS.gene71566.t1 AT4G04500 31.132 212 131 5 57 255 45 254 3.96e-22 95.9
MS.gene71566.t1 AT4G23250 27.586 232 150 6 36 254 30 256 1.07e-21 94.7
MS.gene71566.t1 AT4G23250 27.586 232 150 6 36 254 30 256 1.14e-21 94.7
MS.gene71566.t1 AT4G23250 27.586 232 150 6 36 254 30 256 1.41e-21 94.4
MS.gene71566.t1 AT4G23250 26.415 212 131 5 43 254 733 919 1.76e-12 67.4
MS.gene71566.t1 AT4G11490 29.032 217 146 3 38 248 27 241 1.99e-21 94.0
MS.gene71566.t1 AT4G23310 33.333 180 110 4 71 248 179 350 2.50e-21 93.6
MS.gene71566.t1 AT4G23310 33.333 180 110 4 71 248 179 350 2.68e-21 93.6
MS.gene71566.t1 AT4G23240 28.704 216 147 4 43 254 33 245 5.27e-21 92.4
MS.gene71566.t1 AT3G21910 27.753 227 150 7 42 258 48 270 5.90e-21 89.7
MS.gene71566.t1 AT1G61750 30.189 212 140 6 43 251 38 244 8.92e-21 90.5
MS.gene71566.t1 AT4G21400 37.226 137 84 2 130 265 1 136 1.89e-20 90.9
MS.gene71566.t1 AT4G23260 27.727 220 151 5 36 249 30 247 3.84e-20 90.1
MS.gene71566.t1 AT4G23260 27.727 220 151 5 36 249 30 247 4.30e-20 90.1
MS.gene71566.t1 AT5G48540 30.526 190 123 5 71 256 59 243 3.10e-19 84.7
MS.gene71566.t1 AT3G21920 29.388 245 143 11 32 258 40 272 5.49e-19 84.3
MS.gene71566.t1 AT3G21920 29.388 245 143 11 32 258 62 294 5.99e-19 84.7
MS.gene71566.t1 AT3G22040 27.519 258 160 9 4 248 7 250 7.85e-19 83.6
MS.gene71566.t1 AT1G63600 28.507 221 148 4 35 250 39 254 8.04e-19 84.7
MS.gene71566.t1 AT1G63550 28.037 214 147 4 40 250 37 246 8.10e-19 84.7
MS.gene71566.t1 AT1G63580 29.469 207 139 5 49 250 35 239 1.53e-18 83.2
MS.gene71566.t1 AT3G21930 28.980 245 144 11 32 258 40 272 1.82e-18 83.2
MS.gene71566.t1 AT4G11460 31.609 174 104 5 87 248 1 171 2.64e-18 84.7
MS.gene71566.t1 AT1G63570 29.282 181 122 3 72 249 64 241 9.54e-18 81.3
MS.gene71566.t1 AT1G63570 29.282 181 122 3 72 249 64 241 9.54e-18 81.3
MS.gene71566.t1 AT1G63570 29.282 181 122 3 72 249 117 294 1.10e-17 81.6
MS.gene71566.t1 AT4G11480 22.439 205 150 3 50 250 37 236 2.21e-17 81.6
MS.gene71566.t1 AT4G11480 22.439 205 150 3 50 250 37 236 3.11e-17 81.6
MS.gene71566.t1 AT4G11480 22.439 205 150 3 50 250 37 236 3.32e-17 81.3
MS.gene71566.t1 AT3G21940 33.333 180 101 6 92 255 3 179 3.33e-17 77.4
MS.gene71566.t1 AT4G11480 22.439 205 150 3 50 250 37 236 3.63e-17 81.3
MS.gene71566.t1 AT4G23190 31.361 169 104 5 89 248 1 166 7.01e-17 80.5
MS.gene71566.t1 AT4G23190 31.361 169 104 5 89 248 1 166 7.01e-17 80.5
MS.gene71566.t1 AT4G04570 27.477 222 149 5 43 254 32 251 8.18e-17 80.1
MS.gene71566.t1 AT4G04570 27.477 222 149 5 43 254 32 251 9.10e-17 80.1
MS.gene71566.t1 AT3G29040 29.961 257 156 11 3 248 5 248 1.32e-16 77.4
MS.gene71566.t1 AT5G41280 28.804 184 119 4 72 249 67 244 1.47e-16 77.8
MS.gene71566.t1 AT4G11470 26.126 222 143 7 43 254 41 251 1.84e-16 79.3
MS.gene71566.t1 AT4G11470 26.126 222 143 7 43 254 36 246 1.91e-16 79.3
MS.gene71566.t1 AT3G21940 27.636 275 166 12 2 255 12 274 4.68e-16 76.3
MS.gene71566.t1 AT3G29050 27.915 283 174 11 1 258 1 278 5.49e-16 76.3
MS.gene71566.t1 AT5G41300 27.468 233 158 6 15 243 16 241 6.77e-16 76.3
MS.gene71566.t1 AT4G20680 29.444 180 116 5 78 248 83 260 1.71e-15 74.7
MS.gene71566.t1 AT4G04510 26.667 225 142 6 44 254 35 250 8.31e-15 74.3
MS.gene71566.t1 AT4G04510 26.667 225 142 6 44 254 33 248 8.53e-15 74.3
MS.gene71566.t1 AT3G22010 27.928 222 132 9 42 248 48 256 1.30e-14 72.0
MS.gene71566.t1 AT3G22050 27.225 191 114 5 71 248 73 251 1.81e-14 71.6
MS.gene71566.t1 AT3G22000 28.333 180 118 5 78 248 83 260 4.97e-14 70.5
MS.gene71566.t1 AT4G04540 23.556 225 157 6 43 254 32 254 1.29e-13 70.9
MS.gene71566.t1 AT4G23290 26.047 215 148 7 42 248 31 242 1.38e-13 70.9
MS.gene71566.t1 AT1G63590 23.673 245 176 5 11 250 8 246 1.63e-13 68.9
MS.gene71566.t1 AT4G04540 23.556 225 157 6 43 254 32 254 1.70e-13 70.5
MS.gene71566.t1 AT4G04540 23.556 225 157 6 43 254 32 254 1.99e-13 70.1
MS.gene71566.t1 AT4G04540 23.556 225 157 6 43 254 32 254 2.05e-13 70.1
MS.gene71566.t1 AT1G70690 24.597 248 160 9 7 248 7 233 2.10e-13 69.3
MS.gene71566.t1 AT3G21900 24.519 208 148 4 41 248 45 243 3.20e-13 68.2
MS.gene71566.t1 AT4G04490 26.906 223 128 9 50 253 40 246 1.61e-12 67.4

Find 43 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTAGGCCTAAACGAAAT+TGG 0.229067 1.4:-81584891 MS.gene71566:CDS
TATTCAGACCGTTCTATATT+AGG 0.252445 1.4:-81584906 MS.gene71566:CDS
AGTTACCTCTATCGTTATTT+TGG 0.283454 1.4:+81585192 None:intergenic
GGCAGATCAATTTAATATCT+TGG 0.285791 1.4:-81584829 MS.gene71566:CDS
CGTTTACTTTGTCATTGTTT+TGG 0.299429 1.4:+81585069 None:intergenic
CTATCAACCTAAAGCAAAAC+TGG 0.325641 1.4:-81584544 MS.gene71566:CDS
TTTCAAGATGTTGTAGCAAT+AGG 0.335675 1.4:-81584626 MS.gene71566:CDS
TTGCTTTAGGTTGATAGAAT+TGG 0.343077 1.4:+81584550 None:intergenic
TTAAGAAGCAAGGCTATAAA+TGG 0.352413 1.4:-81584786 MS.gene71566:CDS
AAATTTGAGGTTGTTGTAGA+AGG 0.358526 1.4:+81585154 None:intergenic
TTGGTCGTTGTTGTCTGCTT+TGG 0.382399 1.4:+81585235 None:intergenic
AAGCAGGTCCAATTTCGTTT+AGG 0.394951 1.4:+81584883 None:intergenic
GGTTTCTACAACAGCAACTA+TGG 0.395958 1.4:-81585092 MS.gene71566:CDS
AGTAGTAATCAAATAATATA+TGG 0.412356 1.4:-81584720 MS.gene71566:CDS
TTAGACCAAGCTGTAATTTG+AGG 0.412757 1.4:-81584587 MS.gene71566:CDS
CAGTGTACACCTGACTTGTC+TGG 0.440744 1.4:-81584690 MS.gene71566:CDS
AATGACAAAGTAAACGTCAT+TGG 0.446473 1.4:-81585062 MS.gene71566:CDS
GATAATTATGAGAAGGAGAA+AGG 0.448511 1.4:+81585274 None:intergenic
AGGCATTTGCGACAATCATC+AGG 0.449621 1.4:+81585017 None:intergenic
TCACATCGTAAGTATGTTGT+AGG 0.450527 1.4:-81584759 MS.gene71566:CDS
TGCTTGTGTGAGATTTGATC+TGG 0.460048 1.4:+81584986 None:intergenic
TGCGACCAAAATAACGATAG+AGG 0.460057 1.4:-81585197 MS.gene71566:CDS
TATATTATTTGATTACTACT+AGG 0.467816 1.4:+81584723 None:intergenic
CTTTGGCTTTAGATGCGAAA+AGG 0.467869 1.4:+81585252 None:intergenic
GATAGAGGTAACTACATAAC+CGG 0.483653 1.4:-81585182 MS.gene71566:CDS
GTTGAATGATTTAAGAAGCA+AGG 0.524724 1.4:-81584796 MS.gene71566:CDS
TCAAACCTCAAATTACAGCT+TGG 0.526400 1.4:+81584582 None:intergenic
AGATGTTGTAGCAATAGGAT+TGG 0.527777 1.4:-81584621 MS.gene71566:CDS
CACTGGGGACCAGACAAGTC+AGG 0.531473 1.4:+81584681 None:intergenic
GATTGTCGCAAATGCCTAGT+TGG 0.540455 1.4:-81585011 MS.gene71566:CDS
AAGTTCCATGCAAAATAAGC+AGG 0.549615 1.4:+81584867 None:intergenic
CGAAAAGGATAATTATGAGA+AGG 0.552214 1.4:+81585267 None:intergenic
CGTTTAGGCCTAATATAGAA+CGG 0.560797 1.4:+81584898 None:intergenic
GAACTTGAACAATGCAACAA+TGG 0.575248 1.4:-81584850 MS.gene71566:CDS
AAGCAAACAATCATCACACT+GGG 0.585932 1.4:+81584665 None:intergenic
GAAGCAAACAATCATCACAC+TGG 0.591047 1.4:+81584664 None:intergenic
GATTTGATCTGGAACCAACT+AGG 0.593249 1.4:+81584997 None:intergenic
TATGTTGTAGGAACAATGAC+GGG 0.594989 1.4:-81584747 MS.gene71566:CDS
GTTGTTGTAGAAGGTATCAC+CGG 0.605002 1.4:+81585163 None:intergenic
GTATGTTGTAGGAACAATGA+CGG 0.611472 1.4:-81584748 MS.gene71566:CDS
AACGTCATTGGAATATGTAG+AGG 0.614721 1.4:-81585050 MS.gene71566:CDS
AGAAGCAATTGGATGGTACG+AGG 0.670531 1.4:-81584949 MS.gene71566:CDS
AGCAAACAATCATCACACTG+GGG 0.800516 1.4:+81584666 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAGTAATCAAATAATATA+TGG - chr1.4:81585109-81585128 MS.gene71566:CDS 15.0%
!! TATATTATTTGATTACTACT+AGG + chr1.4:81585109-81585128 None:intergenic 15.0%
! ATAAAAAAGAAGCAATTGGA+TGG - chr1.4:81584873-81584892 MS.gene71566:CDS 25.0%
! CCAAATAAAAAAGAAGCAAT+TGG - chr1.4:81584869-81584888 MS.gene71566:CDS 25.0%
! TACAACTCAAAAATTGACTA+CGG - chr1.4:81584716-81584735 MS.gene71566:CDS 25.0%
!!! CCAATTGCTTCTTTTTTATT+TGG + chr1.4:81584872-81584891 None:intergenic 25.0%
AATGACAAAGTAAACGTCAT+TGG - chr1.4:81584767-81584786 MS.gene71566:CDS 30.0%
ATATTAGGCCTAAACGAAAT+TGG - chr1.4:81584938-81584957 MS.gene71566:CDS 30.0%
CGAAAAGGATAATTATGAGA+AGG + chr1.4:81584565-81584584 None:intergenic 30.0%
GATAATTATGAGAAGGAGAA+AGG + chr1.4:81584558-81584577 None:intergenic 30.0%
GGCAGATCAATTTAATATCT+TGG - chr1.4:81585000-81585019 MS.gene71566:CDS 30.0%
GGTGGTAAAAAACAAATTTG+AGG + chr1.4:81584691-81584710 None:intergenic 30.0%
GTTGAATGATTTAAGAAGCA+AGG - chr1.4:81585033-81585052 MS.gene71566:CDS 30.0%
TATTCAGACCGTTCTATATT+AGG - chr1.4:81584923-81584942 MS.gene71566:CDS 30.0%
TTAAGAAGCAAGGCTATAAA+TGG - chr1.4:81585043-81585062 MS.gene71566:CDS 30.0%
TTTCAAGATGTTGTAGCAAT+AGG - chr1.4:81585203-81585222 MS.gene71566:CDS 30.0%
! AAATTTGAGGTTGTTGTAGA+AGG + chr1.4:81584678-81584697 None:intergenic 30.0%
! AGTTACCTCTATCGTTATTT+TGG + chr1.4:81584640-81584659 None:intergenic 30.0%
! CGTTTACTTTGTCATTGTTT+TGG + chr1.4:81584763-81584782 None:intergenic 30.0%
!! TTGCTTTAGGTTGATAGAAT+TGG + chr1.4:81585282-81585301 None:intergenic 30.0%
!!! CAATTTTTGAGTTGTAAGTG+AGG + chr1.4:81584712-81584731 None:intergenic 30.0%
AACGTCATTGGAATATGTAG+AGG - chr1.4:81584779-81584798 MS.gene71566:CDS 35.0%
AAGCAAACAATCATCACACT+GGG + chr1.4:81585167-81585186 None:intergenic 35.0%
AAGTTCCATGCAAAATAAGC+AGG + chr1.4:81584965-81584984 None:intergenic 35.0%
AGATGTTGTAGCAATAGGAT+TGG - chr1.4:81585208-81585227 MS.gene71566:CDS 35.0%
CGTTTAGGCCTAATATAGAA+CGG + chr1.4:81584934-81584953 None:intergenic 35.0%
CTATCAACCTAAAGCAAAAC+TGG - chr1.4:81585285-81585304 MS.gene71566:CDS 35.0%
GAACTTGAACAATGCAACAA+TGG - chr1.4:81584979-81584998 MS.gene71566:CDS 35.0%
GATAGAGGTAACTACATAAC+CGG - chr1.4:81584647-81584666 MS.gene71566:CDS 35.0%
GTATGTTGTAGGAACAATGA+CGG - chr1.4:81585081-81585100 MS.gene71566:CDS 35.0%
TATGTTGTAGGAACAATGAC+GGG - chr1.4:81585082-81585101 MS.gene71566:CDS 35.0%
TCAAACCTCAAATTACAGCT+TGG + chr1.4:81585250-81585269 None:intergenic 35.0%
TCACATCGTAAGTATGTTGT+AGG - chr1.4:81585070-81585089 MS.gene71566:CDS 35.0%
TTAGACCAAGCTGTAATTTG+AGG - chr1.4:81585242-81585261 MS.gene71566:CDS 35.0%
!! CGCAAAAGTAGTGGAATTTT+TGG + chr1.4:81584616-81584635 None:intergenic 35.0%
!!! TATTTTGGTCGCAAAAGTAG+TGG + chr1.4:81584625-81584644 None:intergenic 35.0%
!!! TTTTTGAGTTGTAAGTGAGG+TGG + chr1.4:81584709-81584728 None:intergenic 35.0%
AAGCAGGTCCAATTTCGTTT+AGG + chr1.4:81584949-81584968 None:intergenic 40.0%
AGCAAACAATCATCACACTG+GGG + chr1.4:81585166-81585185 None:intergenic 40.0%
GAAGCAAACAATCATCACAC+TGG + chr1.4:81585168-81585187 None:intergenic 40.0%
GGTTTCTACAACAGCAACTA+TGG - chr1.4:81584737-81584756 MS.gene71566:CDS 40.0%
TGCGACCAAAATAACGATAG+AGG - chr1.4:81584632-81584651 MS.gene71566:CDS 40.0%
TGCTTGTGTGAGATTTGATC+TGG + chr1.4:81584846-81584865 None:intergenic 40.0%
! GATTTGATCTGGAACCAACT+AGG + chr1.4:81584835-81584854 None:intergenic 40.0%
! TGTGAAGCCAGTTTTGCTTT+AGG + chr1.4:81585295-81585314 None:intergenic 40.0%
!! CTTTGGCTTTAGATGCGAAA+AGG + chr1.4:81584580-81584599 None:intergenic 40.0%
!! GTTGTTGTAGAAGGTATCAC+CGG + chr1.4:81584669-81584688 None:intergenic 40.0%
!!! TTGGACCTGCTTATTTTGCA+TGG - chr1.4:81584957-81584976 MS.gene71566:CDS 40.0%
AGAAGCAATTGGATGGTACG+AGG - chr1.4:81584880-81584899 MS.gene71566:CDS 45.0%
AGGCATTTGCGACAATCATC+AGG + chr1.4:81584815-81584834 None:intergenic 45.0%
GATTGTCGCAAATGCCTAGT+TGG - chr1.4:81584818-81584837 MS.gene71566:CDS 45.0%
TTGGTCGTTGTTGTCTGCTT+TGG + chr1.4:81584597-81584616 None:intergenic 45.0%
! CAGTGTACACCTGACTTGTC+TGG - chr1.4:81585139-81585158 MS.gene71566:CDS 50.0%
CACTGGGGACCAGACAAGTC+AGG + chr1.4:81585151-81585170 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 81584527 81585324 81584527 ID=MS.gene71566
chr1.4 mRNA 81584527 81585324 81584527 ID=MS.gene71566.t1;Parent=MS.gene71566
chr1.4 exon 81584527 81585324 81584527 ID=MS.gene71566.t1.exon1;Parent=MS.gene71566.t1
chr1.4 CDS 81584527 81585324 81584527 ID=cds.MS.gene71566.t1;Parent=MS.gene71566.t1
Gene Sequence

>MS.gene71566

ATGTCTATTCTCTCTTTAAGCTCACTTACCTTTCTCCTTCTCATAATTATCCTTTTCGCATCTAAAGCCAAAGCAGACAACAACGACCAAAAATTCCACTACTTTTGCGACCAAAATAACGATAGAGGTAACTACATAACCGGTGATACCTTCTACAACAACCTCAAATTTGTTTTTTACCACCTCACTTACAACTCAAAAATTGACTACGGTTTCTACAACAGCAACTATGGCCAAAACAATGACAAAGTAAACGTCATTGGAATATGTAGAGGAGACATTAATCCTGATGATTGTCGCAAATGCCTAGTTGGTTCCAGATCAAATCTCACACAAGCATGTCCAAATAAAAAAGAAGCAATTGGATGGTACGAGGATGAGAAATGCATGTTACGTTATTCAGACCGTTCTATATTAGGCCTAAACGAAATTGGACCTGCTTATTTTGCATGGAACTTGAACAATGCAACAATGGCAGATCAATTTAATATCTTGGTAAAACAACTGTTGAATGATTTAAGAAGCAAGGCTATAAATGGTGATTCACATCGTAAGTATGTTGTAGGAACAATGACGGGTCCTAGTAGTAATCAAATAATATATGGTCTTGTTCAGTGTACACCTGACTTGTCTGGTCCCCAGTGTGATGATTGTTTGCTTCAATCTATTGCTGAAGTTTCAAGATGTTGTAGCAATAGGATTGGTGCTAGAATTGTTAGACCAAGCTGTAATTTGAGGTTTGAAACTTCATACCAATTCTATCAACCTAAAGCAAAACTGGCTTCACAACTCCCATGA
Protein sequence

>MS.gene71566.t1

MSILSLSSLTFLLLIIILFASKAKADNNDQKFHYFCDQNNDRGNYITGDTFYNNLKFVFYHLTYNSKIDYGFYNSNYGQNNDKVNVIGICRGDINPDDCRKCLVGSRSNLTQACPNKKEAIGWYEDEKCMLRYSDRSILGLNEIGPAYFAWNLNNATMADQFNILVKQLLNDLRSKAINGDSHRKYVVGTMTGPSSNQIIYGLVQCTPDLSGPQCDDCLLQSIAEVSRCCSNRIGARIVRPSCNLRFETSYQFYQPKAKLASQLP