Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051749.t1 | XP_013448523.1 | 94.9 | 474 | 14 | 2 | 5 | 474 | 9 | 476 | 3.60E-230 | 807.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051749.t1 | Q9SRT2 | 44.9 | 477 | 177 | 12 | 10 | 478 | 21 | 419 | 2.5e-78 | 294.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051749.t1 | A0A072U9Q4 | 94.9 | 474 | 14 | 2 | 5 | 474 | 9 | 476 | 2.6e-230 | 807.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051749 | MS.gene051750 | 0.885237 | 9.67E-72 | -1.69E-46 |
| MS.gene051749 | MS.gene052129 | 0.813159 | 2.95E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene053776 | 0.821685 | 3.54E-53 | -1.69E-46 |
| MS.gene051749 | MS.gene055536 | 0.805202 | 1.50E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene056678 | 0.817563 | 3.09E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene056856 | 0.835251 | 1.87E-56 | -1.69E-46 |
| MS.gene051749 | MS.gene058158 | 0.819072 | 1.41E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene062332 | -0.816316 | 5.89E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene064583 | 0.824002 | 1.02E-53 | -1.69E-46 |
| MS.gene051749 | MS.gene065426 | 0.808384 | 3.18E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene066027 | 0.842646 | 2.28E-58 | -1.69E-46 |
| MS.gene051749 | MS.gene071307 | -0.809089 | 2.25E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene08658 | 0.801497 | 8.76E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene08721 | 0.805512 | 1.29E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene09072 | 0.801884 | 7.29E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene20235 | 0.812141 | 4.92E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene20952 | -0.811806 | 5.82E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene21094 | -0.802624 | 5.14E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene21274 | 0.846883 | 1.64E-59 | -1.69E-46 |
| MS.gene051749 | MS.gene22478 | 0.812415 | 4.29E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene23057 | 0.815147 | 1.07E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene24521 | 0.82015 | 7.99E-53 | -1.69E-46 |
| MS.gene051749 | MS.gene24522 | 0.811991 | 5.31E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene26475 | 0.80874 | 2.67E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene27790 | 0.816294 | 5.96E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene28431 | 0.828327 | 9.56E-55 | -1.69E-46 |
| MS.gene051749 | MS.gene30949 | 0.800003 | 1.77E-48 | -1.69E-46 |
| MS.gene051749 | MS.gene31709 | 0.833577 | 4.92E-56 | -1.69E-46 |
| MS.gene051749 | MS.gene32445 | 0.828305 | 9.68E-55 | -1.69E-46 |
| MS.gene051749 | MS.gene32895 | 0.81718 | 3.77E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene34093 | 0.836133 | 1.12E-56 | -1.69E-46 |
| MS.gene051749 | MS.gene35922 | 0.931818 | 2.15E-94 | -1.69E-46 |
| MS.gene051749 | MS.gene35923 | 0.913432 | 6.19E-84 | -1.69E-46 |
| MS.gene051749 | MS.gene35924 | 0.803194 | 3.92E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene38127 | -0.803618 | 3.20E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene38375 | 0.860817 | 1.58E-63 | -1.69E-46 |
| MS.gene051749 | MS.gene40278 | 0.817451 | 3.28E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene40724 | 0.811327 | 7.40E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene41354 | 0.822415 | 2.40E-53 | -1.69E-46 |
| MS.gene051749 | MS.gene43377 | 0.818757 | 1.66E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene45482 | 0.806882 | 6.63E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene47711 | 0.80542 | 1.35E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene48360 | 0.81863 | 1.77E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene52979 | 0.818224 | 2.19E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene53435 | 0.801721 | 7.88E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene53698 | 0.83966 | 1.39E-57 | -1.69E-46 |
| MS.gene051749 | MS.gene55079 | 0.805953 | 1.04E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene55899 | 0.813671 | 2.27E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene57132 | -0.811837 | 5.73E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene58012 | -0.81925 | 1.28E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene58060 | -0.831831 | 1.34E-55 | -1.69E-46 |
| MS.gene051749 | MS.gene58062 | -0.855433 | 6.33E-62 | -1.69E-46 |
| MS.gene051749 | MS.gene58111 | 0.8097 | 1.66E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene58280 | -0.817939 | 2.54E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene58282 | -0.849343 | 3.44E-60 | -1.69E-46 |
| MS.gene051749 | MS.gene59415 | 0.815774 | 7.78E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene59487 | 0.800137 | 1.66E-48 | -1.69E-46 |
| MS.gene051749 | MS.gene62631 | 0.837824 | 4.14E-57 | -1.69E-46 |
| MS.gene051749 | MS.gene63642 | 0.808016 | 3.81E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene63643 | 0.830259 | 3.25E-55 | -1.69E-46 |
| MS.gene051749 | MS.gene63706 | 0.802122 | 6.52E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene64708 | 0.807172 | 5.75E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene64791 | 0.833745 | 4.47E-56 | -1.69E-46 |
| MS.gene051749 | MS.gene67462 | 0.829317 | 5.51E-55 | -1.69E-46 |
| MS.gene051749 | MS.gene68849 | 0.809939 | 1.48E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene68946 | 0.805697 | 1.18E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene69635 | 0.800643 | 1.31E-48 | -1.69E-46 |
| MS.gene051749 | MS.gene70257 | 0.811395 | 7.15E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene70930 | 0.81869 | 1.72E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene71379 | 0.829946 | 3.87E-55 | -1.69E-46 |
| MS.gene051749 | MS.gene71566 | 0.802775 | 4.78E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene72323 | 0.809582 | 1.76E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene76418 | -0.813269 | 2.79E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene76900 | 0.804709 | 1.90E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene77349 | 0.819424 | 1.17E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene77492 | 0.841214 | 5.44E-58 | -1.69E-46 |
| MS.gene051749 | MS.gene77838 | 0.805485 | 1.30E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene79624 | 0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene80979 | 0.800713 | 1.27E-48 | -1.69E-46 |
| MS.gene051749 | MS.gene81725 | 0.824649 | 7.20E-54 | -1.69E-46 |
| MS.gene051749 | MS.gene82356 | -0.858985 | 5.66E-63 | -1.69E-46 |
| MS.gene051749 | MS.gene86099 | -0.823849 | 1.11E-53 | -1.69E-46 |
| MS.gene051749 | MS.gene92210 | 0.81506 | 1.12E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene93196 | 0.82386 | 1.10E-53 | -1.69E-46 |
| MS.gene051749 | MS.gene95132 | 0.835239 | 1.88E-56 | -1.69E-46 |
| MS.gene051749 | MS.gene95596 | 0.805397 | 1.36E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene96299 | 0.83339 | 5.48E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAATTGATTGGTAAATT+AGG | 0.220575 | 7.3:-50527225 | MS.gene051749:CDS |
| GCAGTTCCTATCTATGAAAT+TGG | 0.223353 | 7.3:-50525624 | MS.gene051749:intron |
| TCAAAGATCTACTCCATTAT+TGG | 0.223521 | 7.3:-50526950 | MS.gene051749:CDS |
| TCCTCAGCACCATCCTATTA+TGG | 0.234641 | 7.3:-50525391 | MS.gene051749:CDS |
| ACAGGTAATCTATTTCTTCT+AGG | 0.237001 | 7.3:-50525221 | None:intergenic |
| TCTACTCCATTATTGGAAAA+TGG | 0.261666 | 7.3:-50526943 | MS.gene051749:CDS |
| GTTTCAATCAAATAATTCTT+TGG | 0.281320 | 7.3:-50525437 | MS.gene051749:CDS |
| GAGGAATCTAATGGGAATAT+TGG | 0.295383 | 7.3:+50525409 | None:intergenic |
| ATAAGTGCATGCCAAGGTTT+TGG | 0.306516 | 7.3:+50525275 | None:intergenic |
| ACTAGAAGTTGAAGTTTCTT+TGG | 0.309086 | 7.3:+50526720 | None:intergenic |
| ATTCACAATAATATTTCTAA+TGG | 0.321191 | 7.3:-50525343 | MS.gene051749:CDS |
| TTCTGCAACAGTTGAATTCA+TGG | 0.325717 | 7.3:+50527068 | None:intergenic |
| GAATCAACAATCTCTGAAAA+TGG | 0.326758 | 7.3:-50526802 | MS.gene051749:CDS |
| ATTGTTGAGATGTTCAATTT+TGG | 0.329946 | 7.3:+50527093 | None:intergenic |
| GAAATATTATTGTGAATTGC+TGG | 0.332246 | 7.3:+50525349 | None:intergenic |
| TTACTCTTTCTGCAAGACTA+TGG | 0.332464 | 7.3:+50526364 | None:intergenic |
| CTTCTCCTTATGTGAATTCA+AGG | 0.338861 | 7.3:-50526771 | MS.gene051749:CDS |
| TCTTGTCCCTGGTTGCAATA+AGG | 0.355254 | 7.3:-50526041 | MS.gene051749:intron |
| TGGCATAAACCACCATCTAA+TGG | 0.361230 | 7.3:+50525295 | None:intergenic |
| GCTGCAAAATTCTCTTGCTT+TGG | 0.361360 | 7.3:-50527015 | MS.gene051749:CDS |
| GAATTGTTCTACTCAATTGC+AGG | 0.367833 | 7.3:-50526854 | MS.gene051749:CDS |
| GGCATAAACCACCATCTAAT+GGG | 0.369801 | 7.3:+50525296 | None:intergenic |
| CAGTGGCCAATTTCATAGAT+AGG | 0.382519 | 7.3:+50525618 | None:intergenic |
| CCTCAGCACCATCCTATTAT+GGG | 0.394260 | 7.3:-50525390 | MS.gene051749:CDS |
| AGGAATCTAATGGGAATATT+GGG | 0.404291 | 7.3:+50525410 | None:intergenic |
| GATCCAAGTTCTTTCAATGA+TGG | 0.405954 | 7.3:+50526895 | None:intergenic |
| AATTCTCTTGCTTTGGAAGT+AGG | 0.408436 | 7.3:-50527008 | MS.gene051749:CDS |
| CTGGTGTTGTTGCCCATAAT+AGG | 0.412733 | 7.3:+50525378 | None:intergenic |
| GATGGTGCTGAGGAATCTAA+TGG | 0.422338 | 7.3:+50525400 | None:intergenic |
| GTTGTTGACTTATCCCATAT+TGG | 0.422874 | 7.3:+50527345 | None:intergenic |
| GCAGAATTCTCAACTGATCC+TGG | 0.423123 | 7.3:-50527051 | MS.gene051749:CDS |
| TATTATTCCTTCTAGGTCAC+TGG | 0.424071 | 7.3:-50525943 | MS.gene051749:intron |
| TGATTCAGCACTTAGTTCAA+TGG | 0.424451 | 7.3:-50527301 | MS.gene051749:CDS |
| CTAAGTGGATTTAATGAAGC+TGG | 0.440757 | 7.3:-50525247 | MS.gene051749:CDS |
| TTTGTCATCAGAGAATTGAT+TGG | 0.446145 | 7.3:-50527234 | MS.gene051749:CDS |
| ATTGGTAAATTAGGAAACAT+TGG | 0.447086 | 7.3:-50527216 | MS.gene051749:CDS |
| AACTCAGTGGACCCATTAGA+TGG | 0.450062 | 7.3:-50525307 | MS.gene051749:CDS |
| ATGTAATCCTTTGGTGCCTC+AGG | 0.463142 | 7.3:+50526423 | None:intergenic |
| AGTCCATCATTGAAAGAACT+TGG | 0.466629 | 7.3:-50526898 | MS.gene051749:CDS |
| AAAATTGTCATTTGACATGT+TGG | 0.469622 | 7.3:+50527254 | None:intergenic |
| CTGACATGAATGTAATCCTT+TGG | 0.473631 | 7.3:+50526414 | None:intergenic |
| TAATGGGTCCACTGAGTTGT+GGG | 0.475871 | 7.3:+50525312 | None:intergenic |
| AAATATTATTGTGAATTGCT+GGG | 0.490799 | 7.3:+50525350 | None:intergenic |
| AAGCAGAGGAAGAATCAAAA+GGG | 0.491073 | 7.3:-50526503 | MS.gene051749:CDS |
| CTAATGGGTCCACTGAGTTG+TGG | 0.497924 | 7.3:+50525311 | None:intergenic |
| CTTGAATTCACATAAGGAGA+AGG | 0.513147 | 7.3:+50526772 | None:intergenic |
| GCAGCTCTTTCTGCAAAACC+AGG | 0.515215 | 7.3:+50527033 | None:intergenic |
| TTTGGAAGTAGGAGTTTCAA+TGG | 0.516264 | 7.3:-50526997 | MS.gene051749:CDS |
| AAAGCAGAGGAAGAATCAAA+AGG | 0.521509 | 7.3:-50526504 | MS.gene051749:CDS |
| AAAAGAAAAGTTTCTTCCAA+AGG | 0.532200 | 7.3:-50526748 | MS.gene051749:CDS |
| TGATGAGATCTCACAAACAT+TGG | 0.547828 | 7.3:-50527184 | MS.gene051749:CDS |
| AACCATCTTCAATGCCTACA+TGG | 0.550038 | 7.3:-50527413 | MS.gene051749:CDS |
| CTTCTACAAGATCTTGTCCC+TGG | 0.550938 | 7.3:-50526052 | MS.gene051749:CDS |
| ATTTAATGAAGCTGGCTCAC+AGG | 0.551026 | 7.3:-50525239 | MS.gene051749:CDS |
| CTCAATACTAAAATCCACCT+TGG | 0.554681 | 7.3:+50525589 | None:intergenic |
| AAGCGTATGAAAACAAATGA+AGG | 0.556302 | 7.3:-50526552 | MS.gene051749:CDS |
| ATGGTGCTGAGGAATCTAAT+GGG | 0.559576 | 7.3:+50525401 | None:intergenic |
| GGAGGGAGAAAATCAGTGAA+AGG | 0.560766 | 7.3:-50526081 | MS.gene051749:CDS |
| GATGAAAGTGATTGCCATGT+AGG | 0.566700 | 7.3:+50527399 | None:intergenic |
| TAATCCTTTGGTGCCTCAGG+AGG | 0.569593 | 7.3:+50526426 | None:intergenic |
| TACCAACCTTATTGCAACCA+GGG | 0.572746 | 7.3:+50526035 | None:intergenic |
| ATCATTGCAGCGTCAAGTTG+AGG | 0.580066 | 7.3:-50525881 | MS.gene051749:intron |
| AAAACCTCCTGAGGCACCAA+AGG | 0.580225 | 7.3:-50526430 | MS.gene051749:CDS |
| ATGCACTTATCTTCACTAAG+TGG | 0.581033 | 7.3:-50525262 | MS.gene051749:CDS |
| GGTGGTTTATGCCAAAACCT+TGG | 0.587041 | 7.3:-50525286 | MS.gene051749:CDS |
| TGCCATGTAGGCATTGAAGA+TGG | 0.593613 | 7.3:+50527411 | None:intergenic |
| AACTTCTAGTAACCCTGCAA+TGG | 0.607773 | 7.3:-50526707 | MS.gene051749:intron |
| TTACCAACCTTATTGCAACC+AGG | 0.614090 | 7.3:+50526034 | None:intergenic |
| ATGTTGGAATTTGAAGCTGC+AGG | 0.621377 | 7.3:+50527270 | None:intergenic |
| GGTACAAATAGTAATAATGG+AGG | 0.627017 | 7.3:-50526480 | MS.gene051749:CDS |
| AAAATTGAACATCTCAACAA+TGG | 0.629044 | 7.3:-50527091 | MS.gene051749:CDS |
| TGATCAAAATGATGTTGAGG+TGG | 0.637803 | 7.3:+50527441 | None:intergenic |
| TGTTGTTGCCCATAATAGGA+TGG | 0.639120 | 7.3:+50525382 | None:intergenic |
| GATTGATCAAAATGATGTTG+AGG | 0.642732 | 7.3:+50527438 | None:intergenic |
| GTGAAGATAAGTGCATGCCA+AGG | 0.643919 | 7.3:+50525269 | None:intergenic |
| AAATGGTAAAGTAAAAGCAG+AGG | 0.646618 | 7.3:-50526517 | MS.gene051749:CDS |
| ATTCATGTCAGAGCAAGAAG+AGG | 0.647303 | 7.3:-50526402 | MS.gene051749:CDS |
| AGCAGAGGAAGAATCAAAAG+GGG | 0.649630 | 7.3:-50526502 | MS.gene051749:CDS |
| GAGCAATTCAAAACCTCCTG+AGG | 0.656462 | 7.3:-50526439 | MS.gene051749:CDS |
| CCCATAATAGGATGGTGCTG+AGG | 0.665748 | 7.3:+50525390 | None:intergenic |
| AACTGTGACCCACAACTCAG+TGG | 0.673850 | 7.3:-50525320 | MS.gene051749:CDS |
| TCAGTGGACCCATTAGATGG+TGG | 0.680214 | 7.3:-50525304 | MS.gene051749:CDS |
| ATCCACCTTGGTGTTAACAG+TGG | 0.694539 | 7.3:+50525601 | None:intergenic |
| GCAGAGGAAGAATCAAAAGG+GGG | 0.717660 | 7.3:-50526501 | MS.gene051749:CDS |
| ATTGGCCACTGTTAACACCA+AGG | 0.721123 | 7.3:-50525606 | MS.gene051749:CDS |
| GGCCACTGTTAACACCAAGG+TGG | 0.728183 | 7.3:-50525603 | MS.gene051749:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGACTAATTTAATTAAG+AGG | + | chr7.3:50526024-50526043 | None:intergenic | 15.0% |
| !! | AATGACTAATTTAATTAAGA+GGG | + | chr7.3:50526023-50526042 | None:intergenic | 15.0% |
| !! | GGTAATAATTAGATAAATTA+AGG | - | chr7.3:50526651-50526670 | MS.gene051749:intron | 15.0% |
| !! | TGTTTATATTATAAATTGGA+GGG | - | chr7.3:50526933-50526952 | MS.gene051749:CDS | 15.0% |
| !! | TTGTTTATATTATAAATTGG+AGG | - | chr7.3:50526932-50526951 | MS.gene051749:CDS | 15.0% |
| !!! | ATTCACAATAATATTTCTAA+TGG | - | chr7.3:50527324-50527343 | MS.gene051749:CDS | 15.0% |
| !!! | TGTAAACTAATTTTTGTTAT+AGG | - | chr7.3:50526560-50526579 | MS.gene051749:CDS | 15.0% |
| !! | AAATATTATTGTGAATTGCT+GGG | + | chr7.3:50527320-50527339 | None:intergenic | 20.0% |
| !! | GTTTCAATCAAATAATTCTT+TGG | - | chr7.3:50527230-50527249 | MS.gene051749:CDS | 20.0% |
| !! | TATGAATTATTATTCCTTCT+AGG | - | chr7.3:50526717-50526736 | MS.gene051749:CDS | 20.0% |
| !! | TTCATATTCTAAATCCAAAA+GGG | - | chr7.3:50526042-50526061 | MS.gene051749:CDS | 20.0% |
| !! | TTTCATATTCTAAATCCAAA+AGG | - | chr7.3:50526041-50526060 | MS.gene051749:intron | 20.0% |
| !!! | ACTAATTTTTGTTATAGGTT+AGG | - | chr7.3:50526565-50526584 | MS.gene051749:CDS | 20.0% |
| !!! | CATTTTTGTTTTTGCAATAT+AGG | - | chr7.3:50526066-50526085 | MS.gene051749:CDS | 20.0% |
| !!! | GCATACATAACAATTTTATT+TGG | - | chr7.3:50526844-50526863 | MS.gene051749:CDS | 20.0% |
| !!! | TCAATTTGTTGACTTTTTTT+TGG | - | chr7.3:50527193-50527212 | MS.gene051749:CDS | 20.0% |
| ! | AAAAGAAAAGTTTCTTCCAA+AGG | - | chr7.3:50525919-50525938 | MS.gene051749:CDS | 25.0% |
| ! | AAAATTGAACATCTCAACAA+TGG | - | chr7.3:50525576-50525595 | MS.gene051749:CDS | 25.0% |
| ! | AGAGAATTGATTGGTAAATT+AGG | - | chr7.3:50525442-50525461 | MS.gene051749:CDS | 25.0% |
| ! | ATGATTGTTAGTGTCAATTA+TGG | + | chr7.3:50526352-50526371 | None:intergenic | 25.0% |
| ! | ATTGGTAAATTAGGAAACAT+TGG | - | chr7.3:50525451-50525470 | MS.gene051749:intron | 25.0% |
| ! | CTCAAAAGATGTAAGTTTAA+GGG | - | chr7.3:50527109-50527128 | MS.gene051749:CDS | 25.0% |
| ! | GAAATATTATTGTGAATTGC+TGG | + | chr7.3:50527321-50527340 | None:intergenic | 25.0% |
| ! | GAAGGTGAAAAAATTGAAAA+TGG | - | chr7.3:50526133-50526152 | MS.gene051749:intron | 25.0% |
| ! | TCTCAAAAGATGTAAGTTTA+AGG | - | chr7.3:50527108-50527127 | MS.gene051749:CDS | 25.0% |
| ! | TTCAAAAATTTATCAACCTC+AGG | - | chr7.3:50526891-50526910 | MS.gene051749:CDS | 25.0% |
| !! | AAAAACAAAAATGACCCTTT+TGG | + | chr7.3:50526059-50526078 | None:intergenic | 25.0% |
| !! | AAAATTGTCATTTGACATGT+TGG | + | chr7.3:50525416-50525435 | None:intergenic | 25.0% |
| !! | AGTTTTCCATTTTCCAATAA+TGG | + | chr7.3:50525733-50525752 | None:intergenic | 25.0% |
| !! | ATTGTTGAGATGTTCAATTT+TGG | + | chr7.3:50525577-50525596 | None:intergenic | 25.0% |
| !! | TCGTATTATAGCATATTTTG+AGG | + | chr7.3:50526465-50526484 | None:intergenic | 25.0% |
| !!! | AATTTTTAACTTACCATTGC+AGG | + | chr7.3:50525976-50525995 | None:intergenic | 25.0% |
| !!! | AATTTTTGTTATAGGTTAGG+AGG | - | chr7.3:50526568-50526587 | MS.gene051749:CDS | 25.0% |
| !!! | ATTGTTTTTACACACCAATA+TGG | - | chr7.3:50525308-50525327 | MS.gene051749:CDS | 25.0% |
| !!! | ATTTTTAACTTACCATTGCA+GGG | + | chr7.3:50525975-50525994 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTATAGGTTAGGA+GGG | - | chr7.3:50526569-50526588 | MS.gene051749:CDS | 25.0% |
| !!! | TTGTTTTTACACACCAATAT+GGG | - | chr7.3:50525309-50525328 | MS.gene051749:CDS | 25.0% |
| AAATGGTAAAGTAAAAGCAG+AGG | - | chr7.3:50526150-50526169 | MS.gene051749:intron | 30.0% | |
| AAGCGTATGAAAACAAATGA+AGG | - | chr7.3:50526115-50526134 | MS.gene051749:intron | 30.0% | |
| AAGTCATGTAATAATTCCTG+AGG | + | chr7.3:50526910-50526929 | None:intergenic | 30.0% | |
| ACTAGAAGTTGAAGTTTCTT+TGG | + | chr7.3:50525950-50525969 | None:intergenic | 30.0% | |
| AGGAATCTAATGGGAATATT+GGG | + | chr7.3:50527260-50527279 | None:intergenic | 30.0% | |
| ATGATGGCAATATACATGTT+AGG | - | chr7.3:50526519-50526538 | MS.gene051749:CDS | 30.0% | |
| CACATATTGTGGCAATATAA+AGG | + | chr7.3:50526402-50526421 | None:intergenic | 30.0% | |
| GATTGATCAAAATGATGTTG+AGG | + | chr7.3:50525232-50525251 | None:intergenic | 30.0% | |
| GGTACAAATAGTAATAATGG+AGG | - | chr7.3:50526187-50526206 | MS.gene051749:intron | 30.0% | |
| TAACATGTATATTGCCATCA+TGG | + | chr7.3:50526520-50526539 | None:intergenic | 30.0% | |
| TCAAAGATCTACTCCATTAT+TGG | - | chr7.3:50525717-50525736 | MS.gene051749:intron | 30.0% | |
| TCTACTCCATTATTGGAAAA+TGG | - | chr7.3:50525724-50525743 | MS.gene051749:intron | 30.0% | |
| TTGGTGTGTAAAAACAATCT+TGG | + | chr7.3:50525306-50525325 | None:intergenic | 30.0% | |
| TTTGTCATCAGAGAATTGAT+TGG | - | chr7.3:50525433-50525452 | MS.gene051749:CDS | 30.0% | |
| ! | ACCACAATTTAAAACCATGA+TGG | - | chr7.3:50526503-50526522 | MS.gene051749:CDS | 30.0% |
| ! | CTTTTCCTTGAATTCACATA+AGG | + | chr7.3:50525904-50525923 | None:intergenic | 30.0% |
| ! | GAATCAACAATCTCTGAAAA+TGG | - | chr7.3:50525865-50525884 | MS.gene051749:intron | 30.0% |
| !! | AATTTTGGAGGAGAATTCAA+AGG | + | chr7.3:50525562-50525581 | None:intergenic | 30.0% |
| !! | ATTTTGGAGGAGAATTCAAA+GGG | + | chr7.3:50525561-50525580 | None:intergenic | 30.0% |
| !!! | AGTTTCTTTGGTTTTTCCTT+TGG | + | chr7.3:50525938-50525957 | None:intergenic | 30.0% |
| AAAGCAGAGGAAGAATCAAA+AGG | - | chr7.3:50526163-50526182 | MS.gene051749:intron | 35.0% | |
| AAGCAGAGGAAGAATCAAAA+GGG | - | chr7.3:50526164-50526183 | MS.gene051749:intron | 35.0% | |
| AGTCCATCATTGAAAGAACT+TGG | - | chr7.3:50525769-50525788 | MS.gene051749:intron | 35.0% | |
| ATGCACTTATCTTCACTAAG+TGG | - | chr7.3:50527405-50527424 | MS.gene051749:CDS | 35.0% | |
| CTCAATACTAAAATCCACCT+TGG | + | chr7.3:50527081-50527100 | None:intergenic | 35.0% | |
| CTGACATGAATGTAATCCTT+TGG | + | chr7.3:50526256-50526275 | None:intergenic | 35.0% | |
| CTTCTCCTTATGTGAATTCA+AGG | - | chr7.3:50525896-50525915 | MS.gene051749:CDS | 35.0% | |
| CTTGAATTCACATAAGGAGA+AGG | + | chr7.3:50525898-50525917 | None:intergenic | 35.0% | |
| GAATTGTTCTACTCAATTGC+AGG | - | chr7.3:50525813-50525832 | MS.gene051749:intron | 35.0% | |
| GAGGAATCTAATGGGAATAT+TGG | + | chr7.3:50527261-50527280 | None:intergenic | 35.0% | |
| GATCCAAGTTCTTTCAATGA+TGG | + | chr7.3:50525775-50525794 | None:intergenic | 35.0% | |
| GCAGTTCCTATCTATGAAAT+TGG | - | chr7.3:50527043-50527062 | MS.gene051749:CDS | 35.0% | |
| TATTATTCCTTCTAGGTCAC+TGG | - | chr7.3:50526724-50526743 | MS.gene051749:CDS | 35.0% | |
| TGATCAAAATGATGTTGAGG+TGG | + | chr7.3:50525229-50525248 | None:intergenic | 35.0% | |
| TGATGAGATCTCACAAACAT+TGG | - | chr7.3:50525483-50525502 | MS.gene051749:intron | 35.0% | |
| TGATTCAGCACTTAGTTCAA+TGG | - | chr7.3:50525366-50525385 | MS.gene051749:CDS | 35.0% | |
| TGCGAAAAAAATTGTTGTCG+CGG | - | chr7.3:50526436-50526455 | MS.gene051749:CDS | 35.0% | |
| TGTCACATTGTCACATATTG+TGG | + | chr7.3:50526413-50526432 | None:intergenic | 35.0% | |
| TTACTCTTTCTGCAAGACTA+TGG | + | chr7.3:50526306-50526325 | None:intergenic | 35.0% | |
| TTCTGCAACAGTTGAATTCA+TGG | + | chr7.3:50525602-50525621 | None:intergenic | 35.0% | |
| TTTGGAAGTAGGAGTTTCAA+TGG | - | chr7.3:50525670-50525689 | MS.gene051749:intron | 35.0% | |
| ! | CTAAGTGGATTTAATGAAGC+TGG | - | chr7.3:50527420-50527439 | MS.gene051749:CDS | 35.0% |
| ! | GGGGGTACAAATAGTAATAA+TGG | - | chr7.3:50526184-50526203 | MS.gene051749:intron | 35.0% |
| ! | GTTGAGATGTTCAATTTTGG+AGG | + | chr7.3:50525574-50525593 | None:intergenic | 35.0% |
| !! | AATTCTCTTGCTTTGGAAGT+AGG | - | chr7.3:50525659-50525678 | MS.gene051749:intron | 35.0% |
| !! | GTTGTTGACTTATCCCATAT+TGG | + | chr7.3:50525325-50525344 | None:intergenic | 35.0% |
| !! | TTTTGGAGGAGAATTCAAAG+GGG | + | chr7.3:50525560-50525579 | None:intergenic | 35.0% |
| !!! | GCCATCATGGTTTTAAATTG+TGG | + | chr7.3:50526507-50526526 | None:intergenic | 35.0% |
| AACCATCTTCAATGCCTACA+TGG | - | chr7.3:50525254-50525273 | MS.gene051749:CDS | 40.0% | |
| AACTTCTAGTAACCCTGCAA+TGG | - | chr7.3:50525960-50525979 | MS.gene051749:intron | 40.0% | |
| AGCAGAGGAAGAATCAAAAG+GGG | - | chr7.3:50526165-50526184 | MS.gene051749:intron | 40.0% | |
| ATTCATGTCAGAGCAAGAAG+AGG | - | chr7.3:50526265-50526284 | MS.gene051749:intron | 40.0% | |
| CAGTGGCCAATTTCATAGAT+AGG | + | chr7.3:50527052-50527071 | None:intergenic | 40.0% | |
| GATGAAAGTGATTGCCATGT+AGG | + | chr7.3:50525271-50525290 | None:intergenic | 40.0% | |
| GCTGCAAAATTCTCTTGCTT+TGG | - | chr7.3:50525652-50525671 | MS.gene051749:intron | 40.0% | |
| GGCATAAACCACCATCTAAT+GGG | + | chr7.3:50527374-50527393 | None:intergenic | 40.0% | |
| TACCAACCTTATTGCAACCA+GGG | + | chr7.3:50526635-50526654 | None:intergenic | 40.0% | |
| TGGCATAAACCACCATCTAA+TGG | + | chr7.3:50527375-50527394 | None:intergenic | 40.0% | |
| TGTTGTTGCCCATAATAGGA+TGG | + | chr7.3:50527288-50527307 | None:intergenic | 40.0% | |
| TTACCAACCTTATTGCAACC+AGG | + | chr7.3:50526636-50526655 | None:intergenic | 40.0% | |
| ! | ATAAGTGCATGCCAAGGTTT+TGG | + | chr7.3:50527395-50527414 | None:intergenic | 40.0% |
| ! | ATGGTGCTGAGGAATCTAAT+GGG | + | chr7.3:50527269-50527288 | None:intergenic | 40.0% |
| ! | ATGTTGGAATTTGAAGCTGC+AGG | + | chr7.3:50525400-50525419 | None:intergenic | 40.0% |
| ! | ATTTAATGAAGCTGGCTCAC+AGG | - | chr7.3:50527428-50527447 | MS.gene051749:CDS | 40.0% |
| !! | AGTTTAAGGGCTCTAGACAA+TGG | - | chr7.3:50527122-50527141 | MS.gene051749:CDS | 40.0% |
| AACTCAGTGGACCCATTAGA+TGG | - | chr7.3:50527360-50527379 | MS.gene051749:CDS | 45.0% | |
| ATTGGCCACTGTTAACACCA+AGG | - | chr7.3:50527061-50527080 | MS.gene051749:CDS | 45.0% | |
| CCTCAGCACCATCCTATTAT+GGG | - | chr7.3:50527277-50527296 | MS.gene051749:CDS | 45.0% | |
| CTTCTACAAGATCTTGTCCC+TGG | - | chr7.3:50526615-50526634 | MS.gene051749:intron | 45.0% | |
| GAGCAATTCAAAACCTCCTG+AGG | - | chr7.3:50526228-50526247 | MS.gene051749:intron | 45.0% | |
| GCAGAATTCTCAACTGATCC+TGG | - | chr7.3:50525616-50525635 | MS.gene051749:CDS | 45.0% | |
| GCAGAGGAAGAATCAAAAGG+GGG | - | chr7.3:50526166-50526185 | MS.gene051749:intron | 45.0% | |
| GGAGGGAGAAAATCAGTGAA+AGG | - | chr7.3:50526586-50526605 | MS.gene051749:intron | 45.0% | |
| GGTGGTTTATGCCAAAACCT+TGG | - | chr7.3:50527381-50527400 | MS.gene051749:CDS | 45.0% | |
| GTGAAGATAAGTGCATGCCA+AGG | + | chr7.3:50527401-50527420 | None:intergenic | 45.0% | |
| TCCTCAGCACCATCCTATTA+TGG | - | chr7.3:50527276-50527295 | MS.gene051749:CDS | 45.0% | |
| TCTTGTCCCTGGTTGCAATA+AGG | - | chr7.3:50526626-50526645 | MS.gene051749:intron | 45.0% | |
| ! | ATCATTGCAGCGTCAAGTTG+AGG | - | chr7.3:50526786-50526805 | MS.gene051749:CDS | 45.0% |
| ! | GATGGTGCTGAGGAATCTAA+TGG | + | chr7.3:50527270-50527289 | None:intergenic | 45.0% |
| ! | TAATGGGTCCACTGAGTTGT+GGG | + | chr7.3:50527358-50527377 | None:intergenic | 45.0% |
| ! | TGCTTTTCCAGTGACCTAGA+AGG | + | chr7.3:50526734-50526753 | None:intergenic | 45.0% |
| ! | TGTGAATTGCTGGGTTTTGC+TGG | + | chr7.3:50527311-50527330 | None:intergenic | 45.0% |
| !! | ATCCACCTTGGTGTTAACAG+TGG | + | chr7.3:50527069-50527088 | None:intergenic | 45.0% |
| !! | ATGTAATCCTTTGGTGCCTC+AGG | + | chr7.3:50526247-50526266 | None:intergenic | 45.0% |
| !! | CTGGTGTTGTTGCCCATAAT+AGG | + | chr7.3:50527292-50527311 | None:intergenic | 45.0% |
| !! | TGCCATGTAGGCATTGAAGA+TGG | + | chr7.3:50525259-50525278 | None:intergenic | 45.0% |
| !!! | TTTTTGTTTATATTATAAAT+TGG | - | chr7.3:50526929-50526948 | MS.gene051749:CDS | 5.0% |
| AACTGTGACCCACAACTCAG+TGG | - | chr7.3:50527347-50527366 | MS.gene051749:CDS | 50.0% | |
| GCAGCTCTTTCTGCAAAACC+AGG | + | chr7.3:50525637-50525656 | None:intergenic | 50.0% | |
| GTCCCTGGTTGCAATAAGGT+TGG | - | chr7.3:50526630-50526649 | MS.gene051749:intron | 50.0% | |
| TACGACCGCAATTGCAGTTG+CGG | - | chr7.3:50526480-50526499 | MS.gene051749:CDS | 50.0% | |
| TCAGTGGACCCATTAGATGG+TGG | - | chr7.3:50527363-50527382 | MS.gene051749:CDS | 50.0% | |
| ! | AAAACCTCCTGAGGCACCAA+AGG | - | chr7.3:50526237-50526256 | MS.gene051749:intron | 50.0% |
| ! | CCCATAATAGGATGGTGCTG+AGG | + | chr7.3:50527280-50527299 | None:intergenic | 50.0% |
| ! | CTAATGGGTCCACTGAGTTG+TGG | + | chr7.3:50527359-50527378 | None:intergenic | 50.0% |
| !! | TAATCCTTTGGTGCCTCAGG+AGG | + | chr7.3:50526244-50526263 | None:intergenic | 50.0% |
| GGCCACTGTTAACACCAAGG+TGG | - | chr7.3:50527064-50527083 | MS.gene051749:CDS | 55.0% | |
| GTGGTCCGCAACTGCAATTG+CGG | + | chr7.3:50526488-50526507 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 50525222 | 50527467 | 50525222 | ID=MS.gene051749 |
| chr7.3 | mRNA | 50525222 | 50527467 | 50525222 | ID=MS.gene051749.t1;Parent=MS.gene051749 |
| chr7.3 | exon | 50526708 | 50527467 | 50526708 | ID=MS.gene051749.t1.exon1;Parent=MS.gene051749.t1 |
| chr7.3 | CDS | 50526708 | 50527467 | 50526708 | ID=cds.MS.gene051749.t1;Parent=MS.gene051749.t1 |
| chr7.3 | exon | 50526368 | 50526601 | 50526368 | ID=MS.gene051749.t1.exon2;Parent=MS.gene051749.t1 |
| chr7.3 | CDS | 50526368 | 50526601 | 50526368 | ID=cds.MS.gene051749.t1;Parent=MS.gene051749.t1 |
| chr7.3 | exon | 50526042 | 50526107 | 50526042 | ID=MS.gene051749.t1.exon3;Parent=MS.gene051749.t1 |
| chr7.3 | CDS | 50526042 | 50526107 | 50526042 | ID=cds.MS.gene051749.t1;Parent=MS.gene051749.t1 |
| chr7.3 | exon | 50525882 | 50525950 | 50525882 | ID=MS.gene051749.t1.exon4;Parent=MS.gene051749.t1 |
| chr7.3 | CDS | 50525882 | 50525950 | 50525882 | ID=cds.MS.gene051749.t1;Parent=MS.gene051749.t1 |
| chr7.3 | exon | 50525571 | 50525642 | 50525571 | ID=MS.gene051749.t1.exon5;Parent=MS.gene051749.t1 |
| chr7.3 | CDS | 50525571 | 50525642 | 50525571 | ID=cds.MS.gene051749.t1;Parent=MS.gene051749.t1 |
| chr7.3 | exon | 50525222 | 50525461 | 50525222 | ID=MS.gene051749.t1.exon6;Parent=MS.gene051749.t1 |
| chr7.3 | CDS | 50525222 | 50525461 | 50525222 | ID=cds.MS.gene051749.t1;Parent=MS.gene051749.t1 |
| Gene Sequence |
| Protein sequence |
