Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71622.t1 | XP_003592502.1 | 61.4 | 277 | 79 | 5 | 3 | 278 | 2 | 251 | 1.00E-54 | 223.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71622.t1 | Q9SSW2 | 47.4 | 194 | 65 | 6 | 90 | 273 | 95 | 261 | 3.2e-25 | 117.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71622.t1 | G7IEV2 | 61.4 | 277 | 79 | 5 | 3 | 278 | 2 | 251 | 7.2e-55 | 223.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene71622.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050363 | MS.gene71622 | 0.802051 | 6.74E-49 | -1.69E-46 |
MS.gene056408 | MS.gene71622 | 0.810916 | 9.09E-51 | -1.69E-46 |
MS.gene060274 | MS.gene71622 | 0.869122 | 3.92E-66 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71622.t1 | MTR_1g106730 | 80.142 | 282 | 18 | 9 | 3 | 278 | 2 | 251 | 1.29e-142 | 401 |
MS.gene71622.t1 | MTR_3g102980 | 46.909 | 275 | 96 | 13 | 4 | 272 | 1 | 231 | 1.24e-53 | 174 |
MS.gene71622.t1 | MTR_1g018420 | 46.053 | 228 | 66 | 9 | 55 | 269 | 38 | 221 | 2.87e-46 | 155 |
MS.gene71622.t1 | MTR_4g028610 | 32.000 | 200 | 71 | 5 | 41 | 175 | 136 | 335 | 1.74e-20 | 90.9 |
MS.gene71622.t1 | MTR_4g027440 | 34.965 | 143 | 74 | 4 | 93 | 224 | 212 | 346 | 7.94e-19 | 85.5 |
MS.gene71622.t1 | MTR_0160s0030 | 39.683 | 126 | 52 | 4 | 101 | 226 | 240 | 341 | 1.32e-18 | 84.7 |
MS.gene71622.t1 | MTR_7g023560 | 35.075 | 134 | 65 | 4 | 60 | 191 | 12 | 125 | 5.63e-16 | 74.7 |
MS.gene71622.t1 | MTR_1g067650 | 38.255 | 149 | 70 | 7 | 95 | 239 | 35 | 165 | 6.53e-16 | 73.9 |
MS.gene71622.t1 | MTR_1g067640 | 38.255 | 149 | 70 | 7 | 95 | 239 | 34 | 164 | 8.41e-16 | 73.6 |
MS.gene71622.t1 | MTR_1g062780 | 32.653 | 196 | 90 | 7 | 60 | 223 | 81 | 266 | 1.97e-15 | 75.1 |
MS.gene71622.t1 | MTR_7g100100 | 46.914 | 81 | 38 | 3 | 101 | 180 | 34 | 110 | 9.11e-15 | 70.9 |
MS.gene71622.t1 | MTR_5g062300 | 43.182 | 88 | 36 | 2 | 103 | 176 | 121 | 208 | 9.15e-15 | 72.4 |
MS.gene71622.t1 | MTR_1g115345 | 42.553 | 94 | 50 | 1 | 102 | 195 | 46 | 135 | 2.00e-14 | 70.9 |
MS.gene71622.t1 | MTR_1g090703 | 29.630 | 216 | 93 | 8 | 56 | 223 | 97 | 301 | 4.66e-14 | 71.6 |
MS.gene71622.t1 | MTR_4g100860 | 32.768 | 177 | 83 | 7 | 57 | 226 | 158 | 305 | 8.31e-14 | 70.5 |
MS.gene71622.t1 | MTR_1g067660 | 36.975 | 119 | 47 | 4 | 60 | 174 | 11 | 105 | 2.42e-13 | 67.0 |
MS.gene71622.t1 | MTR_4g109340 | 41.818 | 110 | 26 | 5 | 102 | 174 | 349 | 457 | 7.95e-13 | 68.6 |
MS.gene71622.t1 | MTR_2g096540 | 43.836 | 73 | 29 | 1 | 102 | 174 | 35 | 95 | 5.79e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71622.t1 | AT1G27730 | 41.818 | 275 | 94 | 13 | 4 | 268 | 1 | 219 | 1.75e-46 | 155 |
MS.gene71622.t1 | AT3G19580 | 43.590 | 234 | 87 | 10 | 55 | 278 | 66 | 264 | 1.74e-43 | 149 |
MS.gene71622.t1 | AT3G19580 | 43.590 | 234 | 87 | 10 | 55 | 278 | 66 | 264 | 1.74e-43 | 149 |
MS.gene71622.t1 | AT3G49930 | 52.740 | 146 | 55 | 4 | 37 | 175 | 34 | 172 | 1.01e-38 | 135 |
MS.gene71622.t1 | AT5G67450 | 39.600 | 250 | 107 | 10 | 4 | 222 | 1 | 237 | 3.11e-38 | 135 |
MS.gene71622.t1 | AT5G04340 | 40.167 | 239 | 96 | 9 | 41 | 268 | 30 | 232 | 1.28e-36 | 130 |
MS.gene71622.t1 | AT5G43170 | 38.492 | 252 | 83 | 13 | 4 | 243 | 1 | 192 | 3.69e-30 | 112 |
MS.gene71622.t1 | AT3G60580 | 36.022 | 186 | 92 | 3 | 55 | 233 | 122 | 287 | 6.10e-26 | 103 |
MS.gene71622.t1 | AT2G45120 | 36.872 | 179 | 80 | 6 | 55 | 223 | 146 | 301 | 1.24e-24 | 100 |
MS.gene71622.t1 | AT1G49900 | 41.558 | 154 | 77 | 6 | 85 | 229 | 178 | 327 | 4.55e-22 | 96.3 |
MS.gene71622.t1 | AT1G49900 | 38.298 | 141 | 75 | 4 | 96 | 230 | 745 | 879 | 1.97e-21 | 94.4 |
MS.gene71622.t1 | AT5G03510 | 32.338 | 201 | 98 | 5 | 56 | 226 | 69 | 261 | 5.12e-20 | 87.8 |
MS.gene71622.t1 | AT1G02030 | 33.333 | 177 | 83 | 4 | 50 | 226 | 118 | 259 | 6.42e-20 | 87.0 |
MS.gene71622.t1 | AT2G28200 | 31.771 | 192 | 104 | 4 | 56 | 223 | 73 | 261 | 2.52e-19 | 85.9 |
MS.gene71622.t1 | AT5G56200 | 45.161 | 93 | 33 | 2 | 101 | 175 | 342 | 434 | 2.09e-17 | 82.0 |
MS.gene71622.t1 | AT3G53600 | 37.500 | 120 | 51 | 3 | 64 | 179 | 21 | 120 | 9.40e-17 | 76.6 |
MS.gene71622.t1 | AT2G17180 | 35.294 | 136 | 57 | 5 | 54 | 176 | 118 | 235 | 1.76e-16 | 77.8 |
MS.gene71622.t1 | AT2G37430 | 37.391 | 115 | 57 | 2 | 60 | 174 | 17 | 116 | 1.83e-16 | 75.9 |
MS.gene71622.t1 | AT5G04390 | 32.919 | 161 | 71 | 4 | 56 | 179 | 96 | 256 | 1.65e-15 | 75.9 |
MS.gene71622.t1 | AT1G02040 | 29.557 | 203 | 99 | 6 | 9 | 175 | 54 | 248 | 1.86e-15 | 75.5 |
MS.gene71622.t1 | AT4G35280 | 36.923 | 130 | 52 | 4 | 56 | 176 | 138 | 246 | 8.69e-15 | 73.2 |
MS.gene71622.t1 | AT2G28710 | 49.315 | 73 | 28 | 2 | 103 | 174 | 36 | 100 | 1.94e-14 | 69.7 |
MS.gene71622.t1 | AT3G10470 | 36.275 | 102 | 37 | 2 | 101 | 174 | 182 | 283 | 2.26e-14 | 72.8 |
MS.gene71622.t1 | AT5G61470 | 38.158 | 76 | 40 | 2 | 101 | 175 | 228 | 297 | 5.13e-12 | 65.5 |
MS.gene71622.t1 | AT3G46080 | 46.575 | 73 | 36 | 2 | 102 | 174 | 38 | 107 | 2.94e-11 | 61.2 |
MS.gene71622.t1 | AT5G59820 | 44.444 | 72 | 32 | 1 | 103 | 174 | 41 | 104 | 3.25e-11 | 60.8 |
MS.gene71622.t1 | AT3G46090 | 45.946 | 74 | 33 | 2 | 102 | 174 | 41 | 108 | 4.13e-11 | 60.8 |
MS.gene71622.t1 | AT3G46070 | 43.836 | 73 | 40 | 1 | 102 | 174 | 37 | 108 | 4.87e-11 | 60.5 |
Find 71 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACATTAATCTTGGTCTTCT+TGG | 0.214897 | 1.4:-82308859 | None:intergenic |
GGAACACTCGTGCATCTTTC+CGG | 0.244557 | 1.4:-82308589 | None:intergenic |
AATTCATGAACGTGAGTCTT+TGG | 0.299951 | 1.4:+82308242 | MS.gene71622:CDS |
TACCTCTTGTTCATTGATTC+CGG | 0.301905 | 1.4:-82308889 | None:intergenic |
AACGGTGTCGTTGACGGTTG+TGG | 0.349088 | 1.4:-82308544 | None:intergenic |
GGCGAGATTAACATTAATCT+TGG | 0.353029 | 1.4:-82308868 | None:intergenic |
CGTTGCCGGTAACCGCTAAA+AGG | 0.357837 | 1.4:+82308919 | MS.gene71622:CDS |
TTCTGGTCTCCGGTTGGATT+CGG | 0.364389 | 1.4:+82308825 | MS.gene71622:CDS |
CAGCGCCTCTCACTGAATTC+TGG | 0.379619 | 1.4:+82308808 | MS.gene71622:CDS |
AGAGGTAGAAAGTCCGTTGC+CGG | 0.419568 | 1.4:+82308905 | MS.gene71622:CDS |
TGATGACGATTTACGGTGGC+TGG | 0.428675 | 1.4:-82308508 | None:intergenic |
CCACCAAGTGCTTGATAAGA+TGG | 0.436761 | 1.4:-82308477 | None:intergenic |
AGGAAAACTCTTGTGACAAA+TGG | 0.437929 | 1.4:-82308610 | None:intergenic |
GCTTTGAATTCTTCTCCAAC+AGG | 0.439849 | 1.4:+82308168 | MS.gene71622:CDS |
CGATCAAAACGACCTCGTAT+TGG | 0.444553 | 1.4:+82308276 | MS.gene71622:CDS |
TGATTCAGCTTCACCGGTGA+TGG | 0.447494 | 1.4:-82308426 | None:intergenic |
AGCAAGATATTCTTCTTCAG+TGG | 0.458967 | 1.4:-82308307 | None:intergenic |
CGTTTCATCATTGTCTTCAC+CGG | 0.478246 | 1.4:-82308955 | None:intergenic |
AACAGAAACGGTGTCGTTGA+CGG | 0.479133 | 1.4:-82308550 | None:intergenic |
CACTTGTGATTCAGCTTCAC+CGG | 0.486794 | 1.4:-82308432 | None:intergenic |
TGGTGTTTGAAGCGTGGGAA+TGG | 0.489183 | 1.4:-82308201 | None:intergenic |
CGTTGACGGTTGTGGATTGG+TGG | 0.490384 | 1.4:-82308536 | None:intergenic |
CCATCTTATCAAGCACTTGG+TGG | 0.494016 | 1.4:+82308477 | MS.gene71622:CDS |
GTCAAATCCACGGTGGCTGA+TGG | 0.494460 | 1.4:-82308775 | None:intergenic |
CTCGTGCATCTTTCCGGTGA+CGG | 0.496027 | 1.4:-82308583 | None:intergenic |
TTCCCATCTTATCAAGCACT+TGG | 0.496098 | 1.4:+82308474 | MS.gene71622:CDS |
GCTCCACCACCGAATCCAAC+CGG | 0.503698 | 1.4:-82308834 | None:intergenic |
TCTCCGGTTGGATTCGGTGG+TGG | 0.505415 | 1.4:+82308831 | MS.gene71622:CDS |
ATCACAGTCTCCGACGGCGG+CGG | 0.508871 | 1.4:+82308741 | MS.gene71622:CDS |
TTTCCTACCGGTCAAGCTCT+CGG | 0.514138 | 1.4:+82308627 | MS.gene71622:CDS |
GGAGGACGCGCCGCCGCCGT+CGG | 0.514572 | 1.4:-82308751 | None:intergenic |
ACTGAATTCTGGTCTCCGGT+TGG | 0.515567 | 1.4:+82308819 | MS.gene71622:CDS |
GATATTCTTCTTCAGTGGGT+GGG | 0.515704 | 1.4:-82308302 | None:intergenic |
TATTGATGACTCCTTCATAG+TGG | 0.516358 | 1.4:-82308665 | None:intergenic |
TCTCACTGAATTCTGGTCTC+CGG | 0.517672 | 1.4:+82308815 | MS.gene71622:CDS |
CAGAATTCAGTGAGAGGCGC+TGG | 0.519958 | 1.4:-82308807 | None:intergenic |
GTTTCCGTCTCAACCGTCAC+CGG | 0.524129 | 1.4:+82308570 | MS.gene71622:CDS |
TGTCGTTGACGGTTGTGGAT+TGG | 0.526945 | 1.4:-82308539 | None:intergenic |
GTGTCCACCGAGAGCTTGAC+CGG | 0.527574 | 1.4:-82308634 | None:intergenic |
CGGTGAAGACAATGATGAAA+CGG | 0.533105 | 1.4:+82308956 | MS.gene71622:CDS |
AAGATTAATGTTAATCTCGC+CGG | 0.533608 | 1.4:+82308870 | MS.gene71622:CDS |
GTTGCAGTCGCCGCCATCAC+CGG | 0.540954 | 1.4:+82308413 | MS.gene71622:CDS |
CACAAACGATGCCACTATGA+AGG | 0.543347 | 1.4:+82308654 | MS.gene71622:CDS |
TCCACGGTGGCTGATGGAGG+AGG | 0.543367 | 1.4:-82308769 | None:intergenic |
GTTGTTGGTGTTTGAAGCGT+GGG | 0.544969 | 1.4:-82308206 | None:intergenic |
AGATATTCTTCTTCAGTGGG+TGG | 0.545715 | 1.4:-82308303 | None:intergenic |
GGTTGAGACGGAAACAGAAA+CGG | 0.552561 | 1.4:-82308562 | None:intergenic |
CTTTCCGGTGACGGTTGAGA+CGG | 0.558965 | 1.4:-82308574 | None:intergenic |
TGGTCTCCGGTTGGATTCGG+TGG | 0.560623 | 1.4:+82308828 | MS.gene71622:CDS |
GGTGATGGCGGCGACTGCAA+CGG | 0.560799 | 1.4:-82308411 | None:intergenic |
GCAAGATATTCTTCTTCAGT+GGG | 0.562178 | 1.4:-82308306 | None:intergenic |
TGAGAGGCGCTGGTAAATTG+AGG | 0.568160 | 1.4:-82308797 | None:intergenic |
CACCAAGTGCTTGATAAGAT+GGG | 0.573814 | 1.4:-82308476 | None:intergenic |
TTCAGCTTCACCGGTGATGG+CGG | 0.589012 | 1.4:-82308423 | None:intergenic |
CGCCGGAATCAATGAACAAG+AGG | 0.596526 | 1.4:+82308887 | MS.gene71622:CDS |
AAATCCACGGTGGCTGATGG+AGG | 0.597416 | 1.4:-82308772 | None:intergenic |
AATGGAATAGTAGCTCCTGT+TGG | 0.598789 | 1.4:-82308183 | None:intergenic |
CAAAGCTTGTAACTCTAAAG+CGG | 0.606121 | 1.4:-82308151 | None:intergenic |
CCACCGAGAGCTTGACCGGT+AGG | 0.606411 | 1.4:-82308630 | None:intergenic |
AGCGGAATCACAGTCTCCGA+CGG | 0.609902 | 1.4:+82308735 | MS.gene71622:CDS |
TGTTGTTGGTGTTTGAAGCG+TGG | 0.617744 | 1.4:-82308207 | None:intergenic |
GGAATCACAGTCTCCGACGG+CGG | 0.629807 | 1.4:+82308738 | MS.gene71622:CDS |
TCCTCCTCCATCAGCCACCG+TGG | 0.642688 | 1.4:+82308768 | MS.gene71622:CDS |
GTAAATTGAGGTCAAATCCA+CGG | 0.651066 | 1.4:-82308785 | None:intergenic |
AGCAACGTCAATAACAGCAG+CGG | 0.671478 | 1.4:+82308717 | MS.gene71622:CDS |
CCTACCGGTCAAGCTCTCGG+TGG | 0.673339 | 1.4:+82308630 | MS.gene71622:CDS |
GGAGACCAGAATTCAGTGAG+AGG | 0.681730 | 1.4:-82308813 | None:intergenic |
TTTCTGATGACGATTTACGG+TGG | 0.728949 | 1.4:-82308512 | None:intergenic |
GTGGGTGGGTTACCAATACG+AGG | 0.737368 | 1.4:-82308288 | None:intergenic |
TCTTCACCGGAAAACAAACG+CGG | 0.774869 | 1.4:-82308942 | None:intergenic |
AATTGAGGTCAAATCCACGG+TGG | 0.794635 | 1.4:-82308782 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTCTTGATTTTCTTGTTGT+TGG | - | chr1.4:82308224-82308243 | None:intergenic | 25.0% |
AAGATTAATGTTAATCTCGC+CGG | + | chr1.4:82308870-82308889 | MS.gene71622:CDS | 30.0% | |
! | AACATTAATCTTGGTCTTCT+TGG | - | chr1.4:82308862-82308881 | None:intergenic | 30.0% |
AATTCATGAACGTGAGTCTT+TGG | + | chr1.4:82308242-82308261 | MS.gene71622:CDS | 35.0% | |
AGCAAGATATTCTTCTTCAG+TGG | - | chr1.4:82308310-82308329 | None:intergenic | 35.0% | |
AGGAAAACTCTTGTGACAAA+TGG | - | chr1.4:82308613-82308632 | None:intergenic | 35.0% | |
GCAAGATATTCTTCTTCAGT+GGG | - | chr1.4:82308309-82308328 | None:intergenic | 35.0% | |
GGCGAGATTAACATTAATCT+TGG | - | chr1.4:82308871-82308890 | None:intergenic | 35.0% | |
GTAAATTGAGGTCAAATCCA+CGG | - | chr1.4:82308788-82308807 | None:intergenic | 35.0% | |
! | AGAGATGTTGATCTTTTCGT+TGG | - | chr1.4:82308364-82308383 | None:intergenic | 35.0% |
! | CAAAGCTTGTAACTCTAAAG+CGG | - | chr1.4:82308154-82308173 | None:intergenic | 35.0% |
! | TATTGATGACTCCTTCATAG+TGG | - | chr1.4:82308668-82308687 | None:intergenic | 35.0% |
!! | GGTTTTCTGATGACGATTTA+CGG | - | chr1.4:82308518-82308537 | None:intergenic | 35.0% |
!! | TACCTCTTGTTCATTGATTC+CGG | - | chr1.4:82308892-82308911 | None:intergenic | 35.0% |
AATGGAATAGTAGCTCCTGT+TGG | - | chr1.4:82308186-82308205 | None:intergenic | 40.0% | |
AGATATTCTTCTTCAGTGGG+TGG | - | chr1.4:82308306-82308325 | None:intergenic | 40.0% | |
CACCAAGTGCTTGATAAGAT+GGG | - | chr1.4:82308479-82308498 | None:intergenic | 40.0% | |
CGGTGAAGACAATGATGAAA+CGG | + | chr1.4:82308956-82308975 | MS.gene71622:CDS | 40.0% | |
CGTTTCATCATTGTCTTCAC+CGG | - | chr1.4:82308958-82308977 | None:intergenic | 40.0% | |
GATATTCTTCTTCAGTGGGT+GGG | - | chr1.4:82308305-82308324 | None:intergenic | 40.0% | |
TTCCCATCTTATCAAGCACT+TGG | + | chr1.4:82308474-82308493 | MS.gene71622:CDS | 40.0% | |
! | GCTTTGAATTCTTCTCCAAC+AGG | + | chr1.4:82308168-82308187 | MS.gene71622:CDS | 40.0% |
! | TGTCACAAGAGTTTTCCTAC+CGG | + | chr1.4:82308615-82308634 | MS.gene71622:CDS | 40.0% |
! | TTTCTGATGACGATTTACGG+TGG | - | chr1.4:82308515-82308534 | None:intergenic | 40.0% |
AATTGAGGTCAAATCCACGG+TGG | - | chr1.4:82308785-82308804 | None:intergenic | 45.0% | |
AGCAACGTCAATAACAGCAG+CGG | + | chr1.4:82308717-82308736 | MS.gene71622:CDS | 45.0% | |
CACAAACGATGCCACTATGA+AGG | + | chr1.4:82308654-82308673 | MS.gene71622:CDS | 45.0% | |
CACTTGTGATTCAGCTTCAC+CGG | - | chr1.4:82308435-82308454 | None:intergenic | 45.0% | |
CCACCAAGTGCTTGATAAGA+TGG | - | chr1.4:82308480-82308499 | None:intergenic | 45.0% | |
CCATCTTATCAAGCACTTGG+TGG | + | chr1.4:82308477-82308496 | MS.gene71622:CDS | 45.0% | |
CGATCAAAACGACCTCGTAT+TGG | + | chr1.4:82308276-82308295 | MS.gene71622:CDS | 45.0% | |
GGTTGAGACGGAAACAGAAA+CGG | - | chr1.4:82308565-82308584 | None:intergenic | 45.0% | |
TCTCACTGAATTCTGGTCTC+CGG | + | chr1.4:82308815-82308834 | MS.gene71622:CDS | 45.0% | |
TCTTCACCGGAAAACAAACG+CGG | - | chr1.4:82308945-82308964 | None:intergenic | 45.0% | |
! | AAACAAACGCGGCCTTTTAG+CGG | - | chr1.4:82308934-82308953 | None:intergenic | 45.0% |
! | GTTGTTGGTGTTTGAAGCGT+GGG | - | chr1.4:82308209-82308228 | None:intergenic | 45.0% |
! | TGTTGTTGGTGTTTGAAGCG+TGG | - | chr1.4:82308210-82308229 | None:intergenic | 45.0% |
!! | AAAAGGCCGCGTTTGTTTTC+CGG | + | chr1.4:82308936-82308955 | MS.gene71622:CDS | 45.0% |
!! | AACAGAAACGGTGTCGTTGA+CGG | - | chr1.4:82308553-82308572 | None:intergenic | 45.0% |
ACTGAATTCTGGTCTCCGGT+TGG | + | chr1.4:82308819-82308838 | MS.gene71622:CDS | 50.0% | |
AGAGGTAGAAAGTCCGTTGC+CGG | + | chr1.4:82308905-82308924 | MS.gene71622:CDS | 50.0% | |
CGCCGGAATCAATGAACAAG+AGG | + | chr1.4:82308887-82308906 | MS.gene71622:CDS | 50.0% | |
GGAACACTCGTGCATCTTTC+CGG | - | chr1.4:82308592-82308611 | None:intergenic | 50.0% | |
GGAGACCAGAATTCAGTGAG+AGG | - | chr1.4:82308816-82308835 | None:intergenic | 50.0% | |
TGATTCAGCTTCACCGGTGA+TGG | - | chr1.4:82308429-82308448 | None:intergenic | 50.0% | |
TGTCGTTGACGGTTGTGGAT+TGG | - | chr1.4:82308542-82308561 | None:intergenic | 50.0% | |
TTCTGGTCTCCGGTTGGATT+CGG | + | chr1.4:82308825-82308844 | MS.gene71622:CDS | 50.0% | |
TTTCCTACCGGTCAAGCTCT+CGG | + | chr1.4:82308627-82308646 | MS.gene71622:CDS | 50.0% | |
! | CTTTTAGCGGTTACCGGCAA+CGG | - | chr1.4:82308921-82308940 | None:intergenic | 50.0% |
! | TGATGACGATTTACGGTGGC+TGG | - | chr1.4:82308511-82308530 | None:intergenic | 50.0% |
! | TGGTGTTTGAAGCGTGGGAA+TGG | - | chr1.4:82308204-82308223 | None:intergenic | 50.0% |
!! | TGAGAGGCGCTGGTAAATTG+AGG | - | chr1.4:82308800-82308819 | None:intergenic | 50.0% |
AAATCCACGGTGGCTGATGG+AGG | - | chr1.4:82308775-82308794 | None:intergenic | 55.0% | |
AGCGGAATCACAGTCTCCGA+CGG | + | chr1.4:82308735-82308754 | MS.gene71622:CDS | 55.0% | |
CAGCGCCTCTCACTGAATTC+TGG | + | chr1.4:82308808-82308827 | MS.gene71622:CDS | 55.0% | |
CGTTGCCGGTAACCGCTAAA+AGG | + | chr1.4:82308919-82308938 | MS.gene71622:CDS | 55.0% | |
CTCGTGCATCTTTCCGGTGA+CGG | - | chr1.4:82308586-82308605 | None:intergenic | 55.0% | |
GTCAAATCCACGGTGGCTGA+TGG | - | chr1.4:82308778-82308797 | None:intergenic | 55.0% | |
GTTTCCGTCTCAACCGTCAC+CGG | + | chr1.4:82308570-82308589 | MS.gene71622:CDS | 55.0% | |
! | CAGAATTCAGTGAGAGGCGC+TGG | - | chr1.4:82308810-82308829 | None:intergenic | 55.0% |
! | CTTTCCGGTGACGGTTGAGA+CGG | - | chr1.4:82308577-82308596 | None:intergenic | 55.0% |
! | TTCAGCTTCACCGGTGATGG+CGG | - | chr1.4:82308426-82308445 | None:intergenic | 55.0% |
!! | AACGGTGTCGTTGACGGTTG+TGG | - | chr1.4:82308547-82308566 | None:intergenic | 55.0% |
!! | CGTTGACGGTTGTGGATTGG+TGG | - | chr1.4:82308539-82308558 | None:intergenic | 55.0% |
!! | GTGGGTGGGTTACCAATACG+AGG | - | chr1.4:82308291-82308310 | None:intergenic | 55.0% |
GCTCCACCACCGAATCCAAC+CGG | - | chr1.4:82308837-82308856 | None:intergenic | 60.0% | |
GGAATCACAGTCTCCGACGG+CGG | + | chr1.4:82308738-82308757 | MS.gene71622:CDS | 60.0% | |
GTGTCCACCGAGAGCTTGAC+CGG | - | chr1.4:82308637-82308656 | None:intergenic | 60.0% | |
TGGTCTCCGGTTGGATTCGG+TGG | + | chr1.4:82308828-82308847 | MS.gene71622:CDS | 60.0% | |
! | CGCGGCCTTTTAGCGGTTAC+CGG | - | chr1.4:82308927-82308946 | None:intergenic | 60.0% |
!! | TCTCCGGTTGGATTCGGTGG+TGG | + | chr1.4:82308831-82308850 | MS.gene71622:CDS | 60.0% |
ATCACAGTCTCCGACGGCGG+CGG | + | chr1.4:82308741-82308760 | MS.gene71622:CDS | 65.0% | |
CCACCGAGAGCTTGACCGGT+AGG | - | chr1.4:82308633-82308652 | None:intergenic | 65.0% | |
CCTACCGGTCAAGCTCTCGG+TGG | + | chr1.4:82308630-82308649 | MS.gene71622:CDS | 65.0% | |
GTTGCAGTCGCCGCCATCAC+CGG | + | chr1.4:82308413-82308432 | MS.gene71622:CDS | 65.0% | |
TCCACGGTGGCTGATGGAGG+AGG | - | chr1.4:82308772-82308791 | None:intergenic | 65.0% | |
TCCTCCTCCATCAGCCACCG+TGG | + | chr1.4:82308768-82308787 | MS.gene71622:CDS | 65.0% | |
!! | GGTGATGGCGGCGACTGCAA+CGG | - | chr1.4:82308414-82308433 | None:intergenic | 65.0% |
! | GGAGGACGCGCCGCCGCCGT+CGG | - | chr1.4:82308754-82308773 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 82308147 | 82308983 | 82308147 | ID=MS.gene71622 |
chr1.4 | mRNA | 82308147 | 82308983 | 82308147 | ID=MS.gene71622.t1;Parent=MS.gene71622 |
chr1.4 | exon | 82308147 | 82308983 | 82308147 | ID=MS.gene71622.t1.exon1;Parent=MS.gene71622.t1 |
chr1.4 | CDS | 82308147 | 82308983 | 82308147 | ID=cds.MS.gene71622.t1;Parent=MS.gene71622.t1 |
Gene Sequence |
Protein sequence |