AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71912

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71912.t1 MTR_4g101650 98.475 590 9 0 1 590 1 590 0.0 1202
MS.gene71912.t1 MTR_3g008580 66.954 581 192 0 6 586 8 588 0.0 815
MS.gene71912.t1 MTR_7g051440 67.135 569 181 4 24 589 26 591 0.0 775
MS.gene71912.t1 MTR_3g115050 52.514 537 234 7 16 551 19 535 0.0 552
MS.gene71912.t1 MTR_4g049390 51.776 535 237 6 18 551 18 532 0.0 544
MS.gene71912.t1 MTR_4g048350 51.589 535 237 7 18 551 18 531 0.0 536
MS.gene71912.t1 MTR_1g026410 51.273 550 244 7 6 551 5 534 0.0 535
MS.gene71912.t1 MTR_8g479380 48.746 558 257 9 4 557 7 539 0.0 524
MS.gene71912.t1 MTR_2g088080 51.963 535 236 6 18 551 21 535 0.0 523
MS.gene71912.t1 MTR_5g018270 50.749 534 240 7 18 551 22 532 3.22e-179 517
MS.gene71912.t1 MTR_4g075690 49.355 543 250 8 10 551 16 534 4.49e-179 517
MS.gene71912.t1 MTR_8g479390 49.064 534 244 8 22 551 26 535 3.51e-177 512
MS.gene71912.t1 MTR_4g132320 48.168 546 261 7 8 551 11 536 1.20e-171 498
MS.gene71912.t1 MTR_1g090707 47.619 546 271 9 10 553 8 540 1.09e-170 498
MS.gene71912.t1 MTR_4g083190 47.509 562 275 8 1 558 1 546 1.18e-170 496
MS.gene71912.t1 MTR_4g083210 45.273 550 277 7 13 558 11 540 4.37e-161 471
MS.gene71912.t1 MTR_2g088080 51.688 474 208 6 79 551 1 454 5.07e-160 466
MS.gene71912.t1 MTR_3g083450 45.772 544 269 7 22 558 21 545 2.07e-158 465
MS.gene71912.t1 MTR_3g083440 45.161 558 274 10 13 558 7 544 3.79e-157 461
MS.gene71912.t1 MTR_3g083390 44.704 557 278 8 13 558 7 544 7.34e-157 461
MS.gene71912.t1 MTR_3g083400 44.982 558 275 10 13 558 7 544 6.42e-156 458
MS.gene71912.t1 MTR_3g083430 44.524 557 279 8 13 558 7 544 1.80e-155 457
MS.gene71912.t1 MTR_3g083410 44.894 519 258 9 48 558 10 508 7.34e-145 429
MS.gene71912.t1 MTR_4g075690 49.342 456 206 8 10 464 16 447 4.35e-144 424
MS.gene71912.t1 MTR_5g020600 29.474 570 356 18 9 549 14 566 4.97e-62 215
MS.gene71912.t1 MTR_5g020620 29.534 579 360 19 1 549 1 561 4.80e-60 209
MS.gene71912.t1 MTR_3g078740 28.930 598 350 21 8 550 8 585 3.98e-57 202
MS.gene71912.t1 MTR_7g062250 29.101 567 332 19 29 549 36 578 2.35e-54 194
MS.gene71912.t1 MTR_7g060460 28.670 579 367 18 6 549 14 581 3.82e-53 191
MS.gene71912.t1 MTR_8g027375 28.599 521 335 14 29 522 36 546 2.62e-52 188
MS.gene71912.t1 MTR_7g058690 27.931 580 369 20 6 549 14 580 3.51e-52 188
MS.gene71912.t1 MTR_5g069680 28.371 571 361 19 7 549 8 558 1.60e-51 186
MS.gene71912.t1 MTR_4g064530 27.788 547 334 13 8 514 25 550 2.12e-51 186
MS.gene71912.t1 MTR_7g458880 27.336 578 375 18 6 549 14 580 7.18e-50 182
MS.gene71912.t1 MTR_4g015120 26.703 543 365 15 29 549 26 557 8.85e-50 181
MS.gene71912.t1 MTR_4g064530 27.778 540 329 13 8 507 25 543 1.44e-49 181
MS.gene71912.t1 MTR_3g462760 28.159 554 351 20 24 549 22 556 7.64e-49 179
MS.gene71912.t1 MTR_8g091390 29.371 572 341 19 17 551 24 569 1.59e-48 178
MS.gene71912.t1 MTR_3g078700 26.724 580 340 21 6 550 7 536 4.07e-47 173
MS.gene71912.t1 MTR_5g073210 27.417 569 371 17 10 549 5 560 2.52e-46 172
MS.gene71912.t1 MTR_4g133150 43.172 227 91 7 131 355 21 211 9.90e-45 158
MS.gene71912.t1 MTR_5g081810 27.068 532 342 19 45 549 17 529 9.02e-44 164
MS.gene71912.t1 MTR_7g065970 28.223 574 340 19 6 531 3 552 1.22e-43 164
MS.gene71912.t1 MTR_5g083360 28.166 529 335 16 14 509 11 527 4.17e-43 162
MS.gene71912.t1 MTR_7g062310 26.763 553 365 17 29 549 49 593 1.26e-42 162
MS.gene71912.t1 MTR_3g078730 27.419 558 320 20 29 550 27 535 2.25e-42 160
MS.gene71912.t1 MTR_2g008330 25.739 575 384 17 6 549 17 579 7.50e-42 159
MS.gene71912.t1 MTR_3g071890 27.941 544 349 17 9 522 13 543 1.70e-41 158
MS.gene71912.t1 MTR_4g019225 26.476 559 363 12 27 549 26 572 4.19e-41 157
MS.gene71912.t1 MTR_7g065980 28.796 573 358 20 15 549 11 571 4.93e-41 157
MS.gene71912.t1 MTR_3g101635 27.306 553 363 16 13 538 15 555 7.99e-41 156
MS.gene71912.t1 MTR_3g101640 27.032 566 368 14 6 538 7 560 9.75e-40 153
MS.gene71912.t1 MTR_5g018290 52.459 61 29 0 491 551 5 65 2.10e-15 71.6
MS.gene71912.t1 MTR_4g133160 31.429 105 58 2 431 535 1 91 2.94e-13 66.2
MS.gene71912.t1 MTR_5g081790 26.543 162 107 4 15 165 9 169 2.35e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71912.t1 AT4G12420 79.359 562 115 1 6 566 3 564 0.0 946
MS.gene71912.t1 AT4G12420 79.359 562 115 1 6 566 3 564 0.0 946
MS.gene71912.t1 AT5G51480 65.165 577 198 3 15 589 16 591 0.0 794
MS.gene71912.t1 AT4G25240 66.018 565 191 1 3 567 5 568 0.0 777
MS.gene71912.t1 AT4G25240 66.018 565 191 1 3 567 5 568 0.0 777
MS.gene71912.t1 AT5G48450 62.410 556 198 4 5 559 7 552 0.0 720
MS.gene71912.t1 AT5G48450 62.410 556 198 4 5 559 7 552 0.0 720
MS.gene71912.t1 AT1G76160 49.281 556 253 8 1 551 1 532 0.0 530
MS.gene71912.t1 AT1G21850 49.081 544 254 6 9 551 11 532 0.0 525
MS.gene71912.t1 AT4G22010 50.000 548 249 8 11 553 7 534 3.00e-180 520
MS.gene71912.t1 AT1G41830 48.816 549 256 7 6 553 11 535 3.77e-180 520
MS.gene71912.t1 AT1G21860 48.346 544 258 6 9 551 11 532 6.46e-180 519
MS.gene71912.t1 AT4G38420 49.724 543 246 9 16 551 19 541 9.36e-175 506
MS.gene71912.t1 AT1G55570 47.417 542 264 7 17 553 19 544 3.01e-173 503
MS.gene71912.t1 AT3G13390 48.059 541 260 7 23 558 24 548 4.81e-171 497
MS.gene71912.t1 AT4G28090 49.074 540 250 10 16 551 18 536 1.72e-168 490
MS.gene71912.t1 AT5G66920 46.629 534 256 8 22 551 32 540 8.59e-168 489
MS.gene71912.t1 AT4G37160 48.820 551 254 10 8 553 11 538 6.81e-167 486
MS.gene71912.t1 AT1G55560 45.714 560 278 9 6 558 5 545 9.08e-167 486
MS.gene71912.t1 AT3G13400 45.648 563 284 9 1 558 1 546 7.55e-166 484
MS.gene71912.t1 AT3G13400 45.648 563 284 9 1 558 1 546 7.55e-166 484
MS.gene71912.t1 AT1G75790 45.073 548 273 10 16 553 16 545 2.98e-159 467
MS.gene71912.t1 AT2G23630 47.940 534 256 7 22 554 30 542 2.47e-158 464
MS.gene71912.t1 AT2G23630 47.940 534 256 7 22 554 25 537 3.31e-158 464
MS.gene71912.t1 AT4G38420 49.068 483 219 9 16 491 19 481 6.39e-149 439
MS.gene71912.t1 AT4G38420 49.123 456 205 9 16 464 19 454 1.09e-138 411
MS.gene71912.t1 AT4G37160 49.134 462 207 10 8 464 11 449 1.24e-137 408
MS.gene71912.t1 AT5G21105 28.916 581 351 19 8 550 20 576 5.10e-58 204
MS.gene71912.t1 AT5G21100 28.322 572 346 18 18 550 15 561 1.32e-55 197
MS.gene71912.t1 AT5G21105 28.810 538 326 17 8 507 20 538 4.47e-54 192
MS.gene71912.t1 AT4G39830 27.087 587 371 17 6 553 13 581 1.47e-53 192
MS.gene71912.t1 AT2G30210 28.229 542 348 16 6 518 9 538 1.72e-51 186
MS.gene71912.t1 AT1G18140 28.998 569 338 21 29 549 31 581 1.34e-50 184
MS.gene71912.t1 AT5G58910 27.257 576 367 19 6 549 12 567 7.46e-50 182
MS.gene71912.t1 AT2G46570 28.442 552 348 17 29 549 34 569 5.69e-49 179
MS.gene71912.t1 AT5G60020 27.857 560 356 16 29 549 27 577 1.45e-48 178
MS.gene71912.t1 AT5G58910 27.431 576 365 20 6 549 12 566 1.99e-48 177
MS.gene71912.t1 AT5G48100 26.394 538 362 10 1 514 1 528 2.16e-48 177
MS.gene71912.t1 AT5G09360 29.049 568 354 20 6 544 18 565 5.47e-48 176
MS.gene71912.t1 AT5G60020 28.125 544 343 16 45 549 11 545 1.19e-47 175
MS.gene71912.t1 AT2G29130 26.950 564 347 16 29 549 32 573 1.86e-47 175
MS.gene71912.t1 AT5G03260 26.795 571 373 16 6 549 5 557 7.28e-46 170
MS.gene71912.t1 AT5G60020 27.938 519 330 14 29 510 27 538 2.40e-45 169
MS.gene71912.t1 AT2G38080 25.342 584 375 18 1 549 1 558 3.78e-45 168
MS.gene71912.t1 AT5G01190 26.667 570 375 18 9 549 3 558 6.77e-45 167
MS.gene71912.t1 AT5G05390 26.945 527 344 15 13 509 10 525 8.68e-45 167
MS.gene71912.t1 AT3G09220 26.908 524 347 14 14 509 12 527 6.93e-43 162
MS.gene71912.t1 AT5G07130 27.133 586 362 19 8 558 7 562 1.16e-42 161
MS.gene71912.t1 AT5G01190 26.894 528 347 17 47 549 31 544 1.68e-42 160
MS.gene71912.t1 AT5G01040 28.157 586 360 20 6 551 4 568 1.90e-42 161
MS.gene71912.t1 AT5G58910 27.002 537 336 19 45 549 11 523 2.77e-42 160
MS.gene71912.t1 AT5G01050 27.598 587 347 19 13 551 14 570 3.74e-42 160
MS.gene71912.t1 AT4G39830 26.358 497 312 15 93 553 6 484 4.41e-38 147
MS.gene71912.t1 AT2G40370 25.801 562 359 17 6 522 7 555 4.90e-38 148
MS.gene71912.t1 AT4G39830 26.358 497 312 15 93 553 8 486 5.06e-38 147
MS.gene71912.t1 AT2G46570 28.024 496 310 17 85 549 5 484 4.01e-36 141
MS.gene71912.t1 AT4G39830 25.553 497 303 14 93 553 8 473 1.15e-33 134
MS.gene71912.t1 AT5G21105 27.919 394 229 13 191 550 13 385 4.33e-32 128
MS.gene71912.t1 AT3G09220 25.688 436 290 12 100 509 3 430 9.72e-28 117
MS.gene71912.t1 AT5G07130 26.389 504 308 18 90 558 2 477 3.69e-27 115
MS.gene71912.t1 AT5G07130 26.389 504 308 18 90 558 2 477 3.69e-27 115

Find 136 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAAGTCTGCCACATTTA+AGG 0.121560 8.3:+19653983 None:intergenic
TGGAAGCTTTAGAGGATTTA+TGG 0.153986 8.3:-19655205 MS.gene71912:CDS
TATCAACAAGTCTGAATTTC+AGG 0.211179 8.3:-19656051 MS.gene71912:CDS
CTGAAAGATCCTTGTGGATT+TGG 0.240958 8.3:+19655447 None:intergenic
CAAAGAGCAGCTGGTGGATT+TGG 0.248226 8.3:-19657010 MS.gene71912:CDS
TGTTCAAAATCGATGTTATC+AGG 0.265298 8.3:+19656679 None:intergenic
TGCTGACCATTACAAATTAA+AGG 0.265825 8.3:-19655298 MS.gene71912:CDS
TGGTAAGTCCAGTTCCATTT+TGG 0.301426 8.3:+19657088 None:intergenic
TGGAGCATGGACAGCAGTTT+TGG 0.302215 8.3:-19654142 MS.gene71912:CDS
CCACAAGGATCTTTCAGATA+TGG 0.317042 8.3:-19655441 MS.gene71912:CDS
GTAATCAATGGAAGCTTTAG+AGG 0.317693 8.3:-19655213 MS.gene71912:CDS
AGAGTGTCATTATATCTATA+AGG 0.320574 8.3:+19656706 None:intergenic
TACATCACTGCTTCTCCTCT+TGG 0.321669 8.3:-19657758 MS.gene71912:CDS
GTATGAAACCTCAAAATCAT+AGG 0.321799 8.3:+19657778 None:intergenic
TCATGGCAAGATGGTGTTCT+TGG 0.331310 8.3:-19657130 MS.gene71912:CDS
TCACGTTGGCAACGAGTTAC+TGG 0.341690 8.3:-19655857 MS.gene71912:CDS
CCCTCGACAATGTTGGAGTT+TGG 0.344346 8.3:-19654116 MS.gene71912:CDS
ACCCGAGGAGGTCCGGTTAG+AGG 0.356788 8.3:+19655246 None:intergenic
CACAGCAACATTGTTGTTTG+TGG 0.367710 8.3:+19657461 None:intergenic
CTGAAGTCTGCCACATTTAA+GGG 0.371433 8.3:+19653984 None:intergenic
CCGTCTGTTTAGGTTTATCC+TGG 0.379057 8.3:-19654162 MS.gene71912:intron
AACCTTGATTCATGGTATCT+TGG 0.379868 8.3:-19654078 MS.gene71912:CDS
GAACAGAAAACCTTGATTCA+TGG 0.383673 8.3:-19654086 MS.gene71912:CDS
CTAGATGATGGAAAAGATCT+TGG 0.385324 8.3:-19656763 MS.gene71912:CDS
ATTGTCCTATTCCACCAAAA+TGG 0.389757 8.3:-19657102 MS.gene71912:CDS
CCAATCCTGCCACTCCAATC+AGG 0.392379 8.3:-19655323 MS.gene71912:CDS
GCTGACCATTACAAATTAAA+GGG 0.394425 8.3:-19655297 MS.gene71912:CDS
TCCTCTTGGAGTACCCCAAC+AGG 0.398295 8.3:-19657744 MS.gene71912:intron
GTAAATCTCTGTCACGTTGA+TGG 0.410681 8.3:+19655416 None:intergenic
GCCTCTAACCGGACCTCCTC+GGG 0.410839 8.3:-19655247 MS.gene71912:CDS
TCTGATCCTTCACTTGAAAC+TGG 0.411595 8.3:+19657068 None:intergenic
CTGCTTCAATCAACGGGAAT+GGG 0.420025 8.3:-19653838 MS.gene71912:CDS
CCAGATGGTGTTCTCATCAA+TGG 0.420137 8.3:-19656736 MS.gene71912:CDS
TAATGGTCAGCAAGCCTGAT+TGG 0.424218 8.3:+19655309 None:intergenic
GCTATCAACAAACAGTTTCC+AGG 0.425051 8.3:-19657501 MS.gene71912:CDS
TGTGAATGTCCACAACAAAT+TGG 0.425756 8.3:-19657442 MS.gene71912:CDS
ATGAAAACCTCCTCATTCAT+TGG 0.431957 8.3:-19657419 MS.gene71912:intron
CTATTCCACCAAAATGGAAC+TGG 0.434841 8.3:-19657096 MS.gene71912:CDS
ATACTCCCTTTAATTTGTAA+TGG 0.435490 8.3:+19655292 None:intergenic
TTCAGCAAAGGAGGAGTTCA+TGG 0.435896 8.3:-19657147 MS.gene71912:CDS
TTTCATCTGCTTCAATCAAC+GGG 0.436558 8.3:-19653844 MS.gene71912:CDS
CCACATTTAAGGGCATTGTC+TGG 0.445078 8.3:+19653994 None:intergenic
TGAACCAAGCAAGATCTATC+AGG 0.449999 8.3:-19655742 MS.gene71912:intron
CCTGATTGGAGTGGCAGGAT+TGG 0.450544 8.3:+19655323 None:intergenic
GCAGGATGGACTTCGGAGAT+TGG 0.461973 8.3:-19655025 MS.gene71912:intron
GAGTGTCATTATATCTATAA+GGG 0.466183 8.3:+19656707 None:intergenic
AAAACAACAATGTCCCCTTC+CGG 0.467709 8.3:+19656938 None:intergenic
TTGGTCAAGAAACATACATC+AGG 0.467887 8.3:-19654059 MS.gene71912:CDS
ATGCATACTTATCACTTGAA+TGG 0.471335 8.3:-19655153 MS.gene71912:CDS
TTTCCCACGAAGCCTCTAAC+CGG 0.473650 8.3:-19655258 MS.gene71912:CDS
ACTACATTGTCGCAAGTGCC+AGG 0.473662 8.3:-19655892 MS.gene71912:CDS
ATTTCATCTGCTTCAATCAA+CGG 0.473734 8.3:-19653845 MS.gene71912:CDS
ATGACCTCTTGCTTTCCCCT+TGG 0.475068 8.3:+19655808 None:intergenic
GAGATTGGTCTGAGAATAGC+AGG 0.476348 8.3:-19655010 MS.gene71912:CDS
AGAGCAGCTGGTGGATTTGG+TGG 0.476861 8.3:-19657007 MS.gene71912:CDS
AAGCGGAGAGCAACACTTAG+TGG 0.478625 8.3:-19655357 MS.gene71912:CDS
TGTTTCTACCCGAGGAGGTC+CGG 0.488278 8.3:+19655239 None:intergenic
GAGACCTGATAGATCTTGCT+TGG 0.490869 8.3:+19655738 None:intergenic
CGACTTCGTGTACATAATGT+TGG 0.490869 8.3:-19656076 MS.gene71912:CDS
GACCAAGATACCATGAATCA+AGG 0.492744 8.3:+19654076 None:intergenic
ATTAATGTAGGCTTTGAGAA+AGG 0.494130 8.3:-19656788 MS.gene71912:intron
TTGAGAAAGGCTCTAGATGA+TGG 0.494379 8.3:-19656775 MS.gene71912:CDS
TCTGCTTCAATCAACGGGAA+TGG 0.495180 8.3:-19653839 MS.gene71912:CDS
CAGATGGTGTTCTCATCAAT+GGG 0.495277 8.3:-19656735 MS.gene71912:CDS
AAAACTGCTGTCCATGCTCC+AGG 0.500206 8.3:+19654144 None:intergenic
AGCCTCTAACCGGACCTCCT+CGG 0.505850 8.3:-19655248 MS.gene71912:CDS
GCAAGCCTGATTGGAGTGGC+AGG 0.508141 8.3:+19655318 None:intergenic
CTTGCACTATTCAAATTCCA+AGG 0.508314 8.3:-19655825 MS.gene71912:CDS
GTAGAAACATCAGTAATCAA+TGG 0.512552 8.3:-19655225 MS.gene71912:CDS
TCCCCTTCCGGAGTATCAAA+AGG 0.513829 8.3:+19656950 None:intergenic
CCATTGATGAGAACACCATC+TGG 0.514712 8.3:+19656736 None:intergenic
TTTCAAGTGAAGGATCAGAT+TGG 0.514777 8.3:-19657064 MS.gene71912:CDS
TTTAGGTTTATCCTGGAGCA+TGG 0.523365 8.3:-19654155 MS.gene71912:intron
TTTGTGGTTACATTAATAGT+AGG 0.524783 8.3:+19657477 None:intergenic
GCTGAAGTTGTTATTCACTT+TGG 0.525996 8.3:-19653816 MS.gene71912:CDS
TGAACTTGCATTCTGATCCA+TGG 0.528156 8.3:+19655919 None:intergenic
TTGCACTATTCAAATTCCAA+GGG 0.541633 8.3:-19655824 MS.gene71912:CDS
TCTCTGCTAGAAGTAAGTTA+TGG 0.541722 8.3:+19656020 None:intergenic
GAACAAATTGATGTCAAACC+AGG 0.544999 8.3:-19656661 MS.gene71912:intron
TTGGTCTCCCTCGACAATGT+TGG 0.545883 8.3:-19654123 MS.gene71912:CDS
AAACCACCAGTGAAAATCGA+TGG 0.548420 8.3:-19655381 MS.gene71912:CDS
ATACATCAGGGTTGTCAACC+CGG 0.551620 8.3:-19654046 MS.gene71912:CDS
TTGATGAGAAAGAAGAAGAG+AGG 0.551843 8.3:+19657848 None:intergenic
TGGCAACGAGTTACTGGAGT+TGG 0.551919 8.3:-19655851 MS.gene71912:CDS
GCTCTTTGAAAATTAAGTGA+AGG 0.552773 8.3:+19657025 None:intergenic
CAGTGAAAATCGATGGGAAG+CGG 0.553222 8.3:-19655374 MS.gene71912:CDS
ATCAAAAGGAACAGAAATGA+CGG 0.554519 8.3:+19656964 None:intergenic
TATGAAACCTCAAAATCATA+GGG 0.554546 8.3:+19657779 None:intergenic
AGCAAGAGGTCATTTACCAC+CGG 0.555237 8.3:-19655798 MS.gene71912:CDS
ACTAGCTTAGATATTCATGT+TGG 0.562613 8.3:-19655965 MS.gene71912:CDS
CAAGTGATAAGTATGCATCT+TGG 0.565246 8.3:+19655158 None:intergenic
TTAAGGGCATTGTCTGGCAT+CGG 0.569023 8.3:+19654000 None:intergenic
ATTGACTGCAGGATGGACTT+CGG 0.572724 8.3:-19655032 MS.gene71912:intron
AGGAGGAGTTCATGGCAAGA+TGG 0.573398 8.3:-19657139 MS.gene71912:CDS
GACTTACCAGTTTCAAGTGA+AGG 0.574483 8.3:-19657074 MS.gene71912:CDS
AACCACCAGTGAAAATCGAT+GGG 0.582588 8.3:-19655380 MS.gene71912:CDS
CAGCTGAAGAGAGTGTAAGA+AGG 0.584437 8.3:+19657816 None:intergenic
AAACAACCTACCAATGAATG+AGG 0.588957 8.3:+19657409 None:intergenic
ACGTGATTCATTCACAAACC+TGG 0.590454 8.3:+19655874 None:intergenic
GGTGTTCTCATCAATGGGAA+AGG 0.593689 8.3:-19656730 MS.gene71912:CDS
CCAGACAATGCCCTTAAATG+TGG 0.594808 8.3:-19653994 MS.gene71912:CDS
ATTACTGATGTTTCTACCCG+AGG 0.595120 8.3:+19655231 None:intergenic
GCAGGGGTACATATAACAAG+TGG 0.596349 8.3:-19654992 MS.gene71912:CDS
GGTACATATAACAAGTGGGA+TGG 0.596737 8.3:-19654987 MS.gene71912:CDS
TCAAATTGATCATCTGGACC+CGG 0.598046 8.3:+19655779 None:intergenic
TGGTGGTTGAAATAGGTCTG+GGG 0.600438 8.3:-19657170 MS.gene71912:intron
TCAAAAGGAACAGAAATGAC+GGG 0.601945 8.3:+19656965 None:intergenic
AGGTCCGGTTAGAGGCTTCG+TGG 0.602265 8.3:+19655254 None:intergenic
TTGGTACACACGCAATCACA+CGG 0.603449 8.3:-19656906 MS.gene71912:intron
GGTCCGGTTAGAGGCTTCGT+GGG 0.612012 8.3:+19655255 None:intergenic
ATAGGTCTGGGGTTCAGCAA+AGG 0.613231 8.3:-19657159 MS.gene71912:intron
AATAGCTCGTACTACAGCGC+AGG 0.617032 8.3:-19654964 MS.gene71912:intron
ACCTGTTGGGGTACTCCAAG+AGG 0.618129 8.3:+19657743 None:intergenic
TCCAAACTCCAACATTGTCG+AGG 0.619426 8.3:+19654115 None:intergenic
GGTCTGGGGTTCAGCAAAGG+AGG 0.623918 8.3:-19657156 MS.gene71912:CDS
AATTCCAAGGGGAAAGCAAG+AGG 0.626773 8.3:-19655812 MS.gene71912:CDS
GTCAGCAAGCCTGATTGGAG+TGG 0.632584 8.3:+19655314 None:intergenic
GCAAGAGGTCATTTACCACC+GGG 0.637101 8.3:-19655797 MS.gene71912:CDS
CCAAACTCCAACATTGTCGA+GGG 0.637486 8.3:+19654116 None:intergenic
TTACTTCTAGCAGAGACTGA+AGG 0.644138 8.3:-19656013 MS.gene71912:CDS
AAGGAACAGAAATGACGGGT+CGG 0.646239 8.3:+19656969 None:intergenic
TGCACTATTCAAATTCCAAG+GGG 0.648906 8.3:-19655823 MS.gene71912:CDS
CAGGGGTACATATAACAAGT+GGG 0.653422 8.3:-19654991 MS.gene71912:CDS
TGGTCAAGAAACATACATCA+GGG 0.655143 8.3:-19654058 MS.gene71912:CDS
CCATATCTGAAAGATCCTTG+TGG 0.657664 8.3:+19655441 None:intergenic
AAAGATCTTGGAATGCCAGA+TGG 0.662306 8.3:-19656751 MS.gene71912:CDS
CAACCTACCAATGAATGAGG+AGG 0.666485 8.3:+19657412 None:intergenic
AGATGGAACGTATCAGCAAG+TGG 0.669963 8.3:-19655477 MS.gene71912:CDS
GTTACATTAATAGTAGGACC+TGG 0.670641 8.3:+19657483 None:intergenic
CAACATTATGTACACGAAGT+CGG 0.670671 8.3:+19656077 None:intergenic
AGATTGGTCTGAGAATAGCA+GGG 0.671526 8.3:-19655009 MS.gene71912:CDS
ACTGATGTTTCTACCCGAGG+AGG 0.675653 8.3:+19655234 None:intergenic
GGTTTGTGAATGAATCACGT+TGG 0.686085 8.3:-19655871 MS.gene71912:CDS
GATTGGTCTGAGAATAGCAG+GGG 0.702170 8.3:-19655008 MS.gene71912:CDS
AATTGATCATCTGGACCCGG+TGG 0.707631 8.3:+19655782 None:intergenic
GGTGCTCGTCCAAATCCACA+AGG 0.734148 8.3:-19655456 MS.gene71912:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTTAAAAAATTGA+GGG - chr8.3:19656887-19656906 MS.gene71912:intron 10.0%
!! AATATATAATTCTATAGAAC+TGG + chr8.3:19655934-19655953 None:intergenic 15.0%
!!! AAGTTTATTTTTTTTATTGG+TGG - chr8.3:19654451-19654470 MS.gene71912:intron 15.0%
!!! AAGTTTTTTGAAATTAATGT+AGG - chr8.3:19654838-19654857 MS.gene71912:intron 15.0%
!!! GTTTTGTTTTTAAAAAATTG+AGG - chr8.3:19656886-19656905 MS.gene71912:intron 15.0%
!!! TTTCTTTGTTAATTTTTAAC+AGG - chr8.3:19655529-19655548 MS.gene71912:intron 15.0%
!! ACATATTTAATATGTCAACA+CGG + chr8.3:19656046-19656065 None:intergenic 20.0%
!! GTTATAGTTAAACTTGAAAA+GGG - chr8.3:19654032-19654051 MS.gene71912:CDS 20.0%
!! GTTTAAAAAGTTGAAAACTT+TGG - chr8.3:19654410-19654429 MS.gene71912:intron 20.0%
!! TGGTTTATGAAAAAAAAAGA+AGG + chr8.3:19656799-19656818 None:intergenic 20.0%
!! TGTTATAGTTAAACTTGAAA+AGG - chr8.3:19654031-19654050 MS.gene71912:CDS 20.0%
!! TTACTGAAAAATGTTCATTA+TGG + chr8.3:19657863-19657882 None:intergenic 20.0%
!! TTGAATAATAAGGGTAAATA+TGG + chr8.3:19657201-19657220 None:intergenic 20.0%
!!! ATGTTTTTCATTGTTTATGT+AGG - chr8.3:19654109-19654128 MS.gene71912:CDS 20.0%
!!! GCTTTTAGTAAATTAAGATT+AGG - chr8.3:19655284-19655303 MS.gene71912:CDS 20.0%
!!! TAATGAACATTTTTCAGTAA+AGG - chr8.3:19657863-19657882 MS.gene71912:CDS 20.0%
!!! TATCAACTTTAGAATTCATT+AGG - chr8.3:19656014-19656033 MS.gene71912:CDS 20.0%
!!! TTACTTTTCAAATACTGATA+TGG - chr8.3:19655052-19655071 MS.gene71912:intron 20.0%
!!! TTGTTTTTCAAATACTGATA+TGG - chr8.3:19655114-19655133 MS.gene71912:intron 20.0%
! AAACATTAGAAACATTTGAC+AGG + chr8.3:19655512-19655531 None:intergenic 25.0%
! AAAGTCAATGATGAAAATCA+AGG + chr8.3:19656865-19656884 None:intergenic 25.0%
! AATTATATAGTCTGCATTAG+TGG + chr8.3:19656096-19656115 None:intergenic 25.0%
! ATGTAGTAAACCAAATAGTA+AGG + chr8.3:19657377-19657396 None:intergenic 25.0%
! GTTATATAGAAAAGATGTGA+AGG - chr8.3:19654074-19654093 MS.gene71912:CDS 25.0%
! TAACTATTATGTATGAAGCA+TGG - chr8.3:19654297-19654316 MS.gene71912:intron 25.0%
! TAGTTGTGTATAAAACTTGT+AGG + chr8.3:19657443-19657462 None:intergenic 25.0%
! TATGAAACCTCAAAATCATA+GGG + chr8.3:19653862-19653881 None:intergenic 25.0%
! TTTGTGGTTACATTAATAGT+AGG + chr8.3:19654164-19654183 None:intergenic 25.0%
!! AGAGTGTCATTATATCTATA+AGG + chr8.3:19654935-19654954 None:intergenic 25.0%
!! CTTCTTTCTCTTACTATTTT+TGG - chr8.3:19653922-19653941 MS.gene71912:intron 25.0%
!! GAGTGTCATTATATCTATAA+GGG + chr8.3:19654934-19654953 None:intergenic 25.0%
!!! AGCTAAAAGCTCTTTTTTTT+GGG + chr8.3:19657007-19657026 None:intergenic 25.0%
!!! AGCTTTTGCTTTGAATAATA+AGG + chr8.3:19657211-19657230 None:intergenic 25.0%
!!! ATACTCCCTTTAATTTGTAA+TGG + chr8.3:19656349-19656368 None:intergenic 25.0%
!!! CTCTTACTATTTTTGGAAAT+GGG - chr8.3:19653929-19653948 MS.gene71912:intron 25.0%
!!! GATATGCATTTTTTGTTGTA+GGG - chr8.3:19656507-19656526 MS.gene71912:intron 25.0%
!!! GCAGATGAAATAATTTTTTG+AGG + chr8.3:19657784-19657803 None:intergenic 25.0%
!!! GCTTTTGCTTTGAATAATAA+GGG + chr8.3:19657210-19657229 None:intergenic 25.0%
!!! TCTCTTACTATTTTTGGAAA+TGG - chr8.3:19653928-19653947 MS.gene71912:intron 25.0%
!!! TGATATGGATGTTTTTTGTT+TGG - chr8.3:19655067-19655086 MS.gene71912:intron 25.0%
!!! TTTTTATTGGTGGTTGAAAT+AGG - chr8.3:19654461-19654480 MS.gene71912:intron 25.0%
AAATGCTTGAATCATGAGTT+TGG + chr8.3:19656819-19656838 None:intergenic 30.0%
AGAAAGAAGAAAAACCTGTT+GGG + chr8.3:19653911-19653930 None:intergenic 30.0%
ATCAAAAGGAACAGAAATGA+CGG + chr8.3:19654677-19654696 None:intergenic 30.0%
ATGCATACTTATCACTTGAA+TGG - chr8.3:19656485-19656504 MS.gene71912:intron 30.0%
ATTAAGATTAGGCACTCAAA+AGG - chr8.3:19655295-19655314 MS.gene71912:CDS 30.0%
ATTTCATCTGCTTCAATCAA+CGG - chr8.3:19657793-19657812 MS.gene71912:CDS 30.0%
CAGTTGGTCAAAAGAATTTA+TGG - chr8.3:19656931-19656950 MS.gene71912:CDS 30.0%
CTACTAACAGATATTAGTCA+AGG + chr8.3:19655404-19655423 None:intergenic 30.0%
CTCTTGTATACAATTTCTCT+AGG - chr8.3:19655218-19655237 MS.gene71912:CDS 30.0%
GATTCTGTGTTAGATTAGAT+TGG - chr8.3:19654796-19654815 MS.gene71912:intron 30.0%
GCTGACCATTACAAATTAAA+GGG - chr8.3:19656341-19656360 MS.gene71912:intron 30.0%
GTAGAAACATCAGTAATCAA+TGG - chr8.3:19656413-19656432 MS.gene71912:intron 30.0%
GTATGAAACCTCAAAATCAT+AGG + chr8.3:19653863-19653882 None:intergenic 30.0%
GTATGTTAGAACAATGAGTT+CGG - chr8.3:19655436-19655455 MS.gene71912:CDS 30.0%
TATCAACAAGTCTGAATTTC+AGG - chr8.3:19655587-19655606 MS.gene71912:intron 30.0%
TATTTCTTTGTAGTCACTCA+TGG + chr8.3:19655187-19655206 None:intergenic 30.0%
TGAATCACTTTATCCAACAT+AGG - chr8.3:19656967-19656986 MS.gene71912:CDS 30.0%
TGCTGACCATTACAAATTAA+AGG - chr8.3:19656340-19656359 MS.gene71912:intron 30.0%
TGTTCAAAATCGATGTTATC+AGG + chr8.3:19654962-19654981 None:intergenic 30.0%
TTGACAAAAAAAGCTCTGTT+TGG - chr8.3:19657052-19657071 MS.gene71912:CDS 30.0%
TTGCACTATTCAAATTCCAA+GGG - chr8.3:19655814-19655833 MS.gene71912:CDS 30.0%
TTGTATTTCAAGAAGTTACC+TGG + chr8.3:19654998-19655017 None:intergenic 30.0%
! ACTAGCTTAGATATTCATGT+TGG - chr8.3:19655673-19655692 MS.gene71912:intron 30.0%
! ATTTGTTCCCTATGATTTTG+AGG - chr8.3:19653852-19653871 MS.gene71912:CDS 30.0%
! GCTCTTTGAAAATTAAGTGA+AGG + chr8.3:19654616-19654635 None:intergenic 30.0%
! GTTTTGTCAAATTGATCATC+TGG + chr8.3:19655868-19655887 None:intergenic 30.0%
! TGGACAATCTTATTCTTTTC+TGG - chr8.3:19655693-19655712 MS.gene71912:intron 30.0%
!! ATTAATGTAGGCTTTGAGAA+AGG - chr8.3:19654850-19654869 MS.gene71912:intron 30.0%
!! TGTTGTTTGAGTTGAGTTTA+TGG - chr8.3:19654764-19654783 MS.gene71912:intron 30.0%
!! TTAAAAAATTGAGGGTACTG+AGG - chr8.3:19656895-19656914 MS.gene71912:intron 30.0%
!! TTATTCTTTTCTGGTAACCA+TGG - chr8.3:19655702-19655721 MS.gene71912:intron 30.0%
!!! GAGCTAAAAGCTCTTTTTTT+TGG + chr8.3:19657008-19657027 None:intergenic 30.0%
!!! GGATATGCATTTTTTGTTGT+AGG - chr8.3:19656506-19656525 MS.gene71912:intron 30.0%
!!! TTGTTGTTTTTATTGGCGAT+TGG - chr8.3:19654713-19654732 MS.gene71912:intron 30.0%
AAACAACCTACCAATGAATG+AGG + chr8.3:19654232-19654251 None:intergenic 35.0%
AACCTTGATTCATGGTATCT+TGG - chr8.3:19657560-19657579 MS.gene71912:intron 35.0%
AAGGTATATGAAGACCATAG+AGG + chr8.3:19655385-19655404 None:intergenic 35.0%
ACGAGCTTATAGCTTATTTC+AGG - chr8.3:19657100-19657119 MS.gene71912:CDS 35.0%
AGTGTAACATCATGCAAGTA+AGG + chr8.3:19656545-19656564 None:intergenic 35.0%
ATGAAAACCTCCTCATTCAT+TGG - chr8.3:19654219-19654238 MS.gene71912:intron 35.0%
ATGTTGTGCTTCTTAATGCA+TGG - chr8.3:19655325-19655344 MS.gene71912:CDS 35.0%
ATTGTCCTATTCCACCAAAA+TGG - chr8.3:19654536-19654555 MS.gene71912:intron 35.0%
CAACATTATGTACACGAAGT+CGG + chr8.3:19655564-19655583 None:intergenic 35.0%
CAAGTGATAAGTATGCATCT+TGG + chr8.3:19656483-19656502 None:intergenic 35.0%
CTTGCACTATTCAAATTCCA+AGG - chr8.3:19655813-19655832 MS.gene71912:CDS 35.0%
GAAAGAAGAAAAACCTGTTG+GGG + chr8.3:19653910-19653929 None:intergenic 35.0%
GAACAAATTGATGTCAAACC+AGG - chr8.3:19654977-19654996 MS.gene71912:CDS 35.0%
GAACAGAAAACCTTGATTCA+TGG - chr8.3:19657552-19657571 MS.gene71912:intron 35.0%
GAGAAAGAAGAAAAACCTGT+TGG + chr8.3:19653912-19653931 None:intergenic 35.0%
GTATACAATTTCTCTAGGCA+TGG - chr8.3:19655223-19655242 MS.gene71912:CDS 35.0%
GTTACATTAATAGTAGGACC+TGG + chr8.3:19654158-19654177 None:intergenic 35.0%
TCAAAAGGAACAGAAATGAC+GGG + chr8.3:19654676-19654695 None:intergenic 35.0%
TCTCTGCTAGAAGTAAGTTA+TGG + chr8.3:19655621-19655640 None:intergenic 35.0%
TCTGTGGTTTATTGTGTAGA+TGG - chr8.3:19656144-19656163 MS.gene71912:intron 35.0%
TGCACTATTCAAATTCCAAG+GGG - chr8.3:19655815-19655834 MS.gene71912:CDS 35.0%
TGGTCAAGAAACATACATCA+GGG - chr8.3:19657580-19657599 MS.gene71912:intron 35.0%
TGTCTCATTTACTTACGCTT+CGG - chr8.3:19655958-19655977 MS.gene71912:CDS 35.0%
TGTGAATGTCCACAACAAAT+TGG - chr8.3:19654196-19654215 MS.gene71912:intron 35.0%
TTAGTAGACGTTATGAAGCA+CGG + chr8.3:19654382-19654401 None:intergenic 35.0%
TTGATGAGAAAGAAGAAGAG+AGG + chr8.3:19653793-19653812 None:intergenic 35.0%
TTGGTCAAGAAACATACATC+AGG - chr8.3:19657579-19657598 MS.gene71912:intron 35.0%
TTTCATCTGCTTCAATCAAC+GGG - chr8.3:19657794-19657813 MS.gene71912:CDS 35.0%
! AGGATGAAATCTAGTTCAGT+TGG - chr8.3:19656915-19656934 MS.gene71912:CDS 35.0%
! CTTAATTTTCAAAGAGCAGC+TGG - chr8.3:19654619-19654638 MS.gene71912:intron 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG + chr8.3:19657248-19657267 None:intergenic 35.0%
! GCTGAAGTTGTTATTCACTT+TGG - chr8.3:19657822-19657841 MS.gene71912:CDS 35.0%
! GTAATCAATGGAAGCTTTAG+AGG - chr8.3:19656425-19656444 MS.gene71912:intron 35.0%
! TTCTGTTCCTTTTGATACTC+CGG - chr8.3:19654681-19654700 MS.gene71912:intron 35.0%
! TTTCAAGTGAAGGATCAGAT+TGG - chr8.3:19654574-19654593 MS.gene71912:intron 35.0%
!! ATTGGTAGGTTGTTTTGTTG+TGG - chr8.3:19654237-19654256 MS.gene71912:intron 35.0%
!! CACTCATTTTTGCAATTCTG+TGG - chr8.3:19656128-19656147 MS.gene71912:intron 35.0%
!! CTAGATGATGGAAAAGATCT+TGG - chr8.3:19654875-19654894 MS.gene71912:intron 35.0%
!! TGGAAGCTTTAGAGGATTTA+TGG - chr8.3:19656433-19656452 MS.gene71912:intron 35.0%
!!! GGGGACATTGTTGTTTTTAT+TGG - chr8.3:19654706-19654725 MS.gene71912:intron 35.0%
!!! GGTAACTCAGTTTTGTTAGT+AGG + chr8.3:19657620-19657639 None:intergenic 35.0%
!!! GGTTTTCATCCAATTTGTTG+TGG + chr8.3:19654208-19654227 None:intergenic 35.0%
AAAACAACAATGTCCCCTTC+CGG + chr8.3:19654703-19654722 None:intergenic 40.0%
AAACCACCAGTGAAAATCGA+TGG - chr8.3:19656257-19656276 MS.gene71912:intron 40.0%
AAACCTCCTCATTCATTGGT+AGG - chr8.3:19654223-19654242 MS.gene71912:intron 40.0%
AAAGATCTTGGAATGCCAGA+TGG - chr8.3:19654887-19654906 MS.gene71912:intron 40.0%
AACCACCAGTGAAAATCGAT+GGG - chr8.3:19656258-19656277 MS.gene71912:intron 40.0%
ACGTGATTCATTCACAAACC+TGG + chr8.3:19655767-19655786 None:intergenic 40.0%
ATAAACCTAAACAGACGGCA+AGG + chr8.3:19657474-19657493 None:intergenic 40.0%
CAGATGGTGTTCTCATCAAT+GGG - chr8.3:19654903-19654922 MS.gene71912:intron 40.0%
CCAAACAGAGCCTTACTATT+TGG - chr8.3:19657364-19657383 MS.gene71912:intron 40.0%
CCAAATAGTAAGGCTCTGTT+TGG + chr8.3:19657367-19657386 None:intergenic 40.0%
CCACAAGGATCTTTCAGATA+TGG - chr8.3:19656197-19656216 MS.gene71912:intron 40.0%
CCAGGATAAACCTAAACAGA+CGG + chr8.3:19657479-19657498 None:intergenic 40.0%
CCATATCTGAAAGATCCTTG+TGG + chr8.3:19656200-19656219 None:intergenic 40.0%
CGACTTCGTGTACATAATGT+TGG - chr8.3:19655562-19655581 MS.gene71912:intron 40.0%
CTATTCCACCAAAATGGAAC+TGG - chr8.3:19654542-19654561 MS.gene71912:intron 40.0%
CTGAAAGATCCTTGTGGATT+TGG + chr8.3:19656194-19656213 None:intergenic 40.0%
CTGAAGTCTGCCACATTTAA+GGG + chr8.3:19657657-19657676 None:intergenic 40.0%
GACCAAGATACCATGAATCA+AGG + chr8.3:19657565-19657584 None:intergenic 40.0%
GCTATCAACAAACAGTTTCC+AGG - chr8.3:19654137-19654156 MS.gene71912:CDS 40.0%
GGTACATATAACAAGTGGGA+TGG - chr8.3:19656651-19656670 MS.gene71912:intron 40.0%
GGTTTGTGAATGAATCACGT+TGG - chr8.3:19655767-19655786 MS.gene71912:CDS 40.0%
GTAAATCTCTGTCACGTTGA+TGG + chr8.3:19656225-19656244 None:intergenic 40.0%
TAAACCTAAACAGACGGCAA+GGG + chr8.3:19657473-19657492 None:intergenic 40.0%
TATCCAACATAGGCTCTGTT+TGG - chr8.3:19656977-19656996 MS.gene71912:CDS 40.0%
TCAAATTGATCATCTGGACC+CGG + chr8.3:19655862-19655881 None:intergenic 40.0%
TCTGATCCTTCACTTGAAAC+TGG + chr8.3:19654573-19654592 None:intergenic 40.0%
TGAACCAAGCAAGATCTATC+AGG - chr8.3:19655896-19655915 MS.gene71912:CDS 40.0%
TGAACTTGCATTCTGATCCA+TGG + chr8.3:19655722-19655741 None:intergenic 40.0%
TTACCAAACAGAGCCTATGT+TGG + chr8.3:19656983-19657002 None:intergenic 40.0%
TTACTTCTAGCAGAGACTGA+AGG - chr8.3:19655625-19655644 MS.gene71912:intron 40.0%
! AAACTTGATCCATTGACTGC+AGG - chr8.3:19656595-19656614 MS.gene71912:intron 40.0%
! AATTTTCAAAGAGCAGCTGG+TGG - chr8.3:19654622-19654641 MS.gene71912:intron 40.0%
! ATTACTGATGTTTCTACCCG+AGG + chr8.3:19656410-19656429 None:intergenic 40.0%
! ATTGGTGGTTGAAATAGGTC+TGG - chr8.3:19654466-19654485 MS.gene71912:intron 40.0%
! CAGGGGTACATATAACAAGT+GGG - chr8.3:19656647-19656666 MS.gene71912:intron 40.0%
! GACTTACCAGTTTCAAGTGA+AGG - chr8.3:19654564-19654583 MS.gene71912:intron 40.0%
! GCACTCAAAGTTTTCCTCTA+TGG - chr8.3:19655368-19655387 MS.gene71912:CDS 40.0%
! TAAGTCCAGTTCCATTTTGG+TGG + chr8.3:19654550-19654569 None:intergenic 40.0%
! TGGTAAGTCCAGTTCCATTT+TGG + chr8.3:19654553-19654572 None:intergenic 40.0%
! TTCCTTTTGATACTCCGGAA+GGG - chr8.3:19654686-19654705 MS.gene71912:intron 40.0%
! TTGGTGGTTGAAATAGGTCT+GGG - chr8.3:19654467-19654486 MS.gene71912:intron 40.0%
! TTTAGGTTTATCCTGGAGCA+TGG - chr8.3:19657483-19657502 MS.gene71912:CDS 40.0%
!! AGATTGGTCTGAGAATAGCA+GGG - chr8.3:19656629-19656648 MS.gene71912:intron 40.0%
!! CACAGCAACATTGTTGTTTG+TGG + chr8.3:19654180-19654199 None:intergenic 40.0%
!! CAGTTCCATTTTGGTGGAAT+AGG + chr8.3:19654544-19654563 None:intergenic 40.0%
!! GGTAACACTTTAGCTCTGTT+TGG - chr8.3:19657073-19657092 MS.gene71912:CDS 40.0%
!! TTGAGAAAGGCTCTAGATGA+TGG - chr8.3:19654863-19654882 MS.gene71912:intron 40.0%
!!! CAAGTTTTGAGTGTTGCTGA+CGG + chr8.3:19656582-19656601 None:intergenic 40.0%
!!! TCAGTTTTGTTAGTAGGCTC+CGG + chr8.3:19657614-19657633 None:intergenic 40.0%
AATTCCAAGGGGAAAGCAAG+AGG - chr8.3:19655826-19655845 MS.gene71912:CDS 45.0%
AGATGGAACGTATCAGCAAG+TGG - chr8.3:19656161-19656180 MS.gene71912:intron 45.0%
AGCAAGAGGTCATTTACCAC+CGG - chr8.3:19655840-19655859 MS.gene71912:CDS 45.0%
ATACATCAGGGTTGTCAACC+CGG - chr8.3:19657592-19657611 MS.gene71912:intron 45.0%
CAACCTACCAATGAATGAGG+AGG + chr8.3:19654229-19654248 None:intergenic 45.0%
CAGTGAAAATCGATGGGAAG+CGG - chr8.3:19656264-19656283 MS.gene71912:intron 45.0%
CCAAACTCCAACATTGTCGA+GGG + chr8.3:19657525-19657544 None:intergenic 45.0%
CCAGACAATGCCCTTAAATG+TGG - chr8.3:19657644-19657663 MS.gene71912:intron 45.0%
CCAGATGGTGTTCTCATCAA+TGG - chr8.3:19654902-19654921 MS.gene71912:intron 45.0%
CCATTGATGAGAACACCATC+TGG + chr8.3:19654905-19654924 None:intergenic 45.0%
CTGCTTCAATCAACGGGAAT+GGG - chr8.3:19657800-19657819 MS.gene71912:CDS 45.0%
GACGTTATGAAGCACGGATA+CGG + chr8.3:19654376-19654395 None:intergenic 45.0%
GAGACCTGATAGATCTTGCT+TGG + chr8.3:19655903-19655922 None:intergenic 45.0%
GCATGGACACTCCTCATATT+AGG - chr8.3:19654314-19654333 MS.gene71912:intron 45.0%
GCTGAAGTCTGCCACATTTA+AGG + chr8.3:19657658-19657677 None:intergenic 45.0%
GGTGTTCTCATCAATGGGAA+AGG - chr8.3:19654908-19654927 MS.gene71912:intron 45.0%
TAATGGTCAGCAAGCCTGAT+TGG + chr8.3:19656332-19656351 None:intergenic 45.0%
TACATCACTGCTTCTCCTCT+TGG - chr8.3:19653880-19653899 MS.gene71912:intron 45.0%
TCATGGCAAGATGGTGTTCT+TGG - chr8.3:19654508-19654527 MS.gene71912:intron 45.0%
TCCAAACTCCAACATTGTCG+AGG + chr8.3:19657526-19657545 None:intergenic 45.0%
TCTGCTTCAATCAACGGGAA+TGG - chr8.3:19657799-19657818 MS.gene71912:CDS 45.0%
TGGTGGTTGAAATAGGTCTG+GGG - chr8.3:19654468-19654487 MS.gene71912:intron 45.0%
TTCAGCAAAGGAGGAGTTCA+TGG - chr8.3:19654491-19654510 MS.gene71912:intron 45.0%
TTGGTACACACGCAATCACA+CGG - chr8.3:19654732-19654751 MS.gene71912:intron 45.0%
! ATTGACTGCAGGATGGACTT+CGG - chr8.3:19656606-19656625 MS.gene71912:intron 45.0%
! CAGCTGAAGAGAGTGTAAGA+AGG + chr8.3:19653825-19653844 None:intergenic 45.0%
! CCGTCTGTTTAGGTTTATCC+TGG - chr8.3:19657476-19657495 MS.gene71912:CDS 45.0%
! GCAGGGGTACATATAACAAG+TGG - chr8.3:19656646-19656665 MS.gene71912:intron 45.0%
! GTTCCTTTTGATACTCCGGA+AGG - chr8.3:19654685-19654704 MS.gene71912:intron 45.0%
! TCCTTTTGATACTCCGGAAG+GGG - chr8.3:19654687-19654706 MS.gene71912:intron 45.0%
! TTGATCCATTGACTGCAGGA+TGG - chr8.3:19656599-19656618 MS.gene71912:intron 45.0%
!! AAGGAACAGAAATGACGGGT+CGG + chr8.3:19654672-19654691 None:intergenic 45.0%
!! CCACATTTAAGGGCATTGTC+TGG + chr8.3:19657647-19657666 None:intergenic 45.0%
!! GAGATTGGTCTGAGAATAGC+AGG - chr8.3:19656628-19656647 MS.gene71912:intron 45.0%
!! GATTGGTCTGAGAATAGCAG+GGG - chr8.3:19656630-19656649 MS.gene71912:intron 45.0%
!! GCTCGCTTGTTGTAAAAGAG+TGG + chr8.3:19656774-19656793 None:intergenic 45.0%
!! TTAAGGGCATTGTCTGGCAT+CGG + chr8.3:19657641-19657660 None:intergenic 45.0%
!!! CAGTTTTGTTAGTAGGCTCC+GGG + chr8.3:19657613-19657632 None:intergenic 45.0%
!!! TTCCCATCGATTTTCACTGG+TGG + chr8.3:19656263-19656282 None:intergenic 45.0%
!!! TAAAAGTTTATTTTTTTTAT+TGG - chr8.3:19654448-19654467 MS.gene71912:intron 5.0%
AAAACTGCTGTCCATGCTCC+AGG + chr8.3:19657497-19657516 None:intergenic 50.0%
AAGCGGAGAGCAACACTTAG+TGG - chr8.3:19656281-19656300 MS.gene71912:intron 50.0%
AATAGCTCGTACTACAGCGC+AGG - chr8.3:19656674-19656693 MS.gene71912:CDS 50.0%
AATTGATCATCTGGACCCGG+TGG + chr8.3:19655859-19655878 None:intergenic 50.0%
ACTACATTGTCGCAAGTGCC+AGG - chr8.3:19655746-19655765 MS.gene71912:CDS 50.0%
AGGAGGAGTTCATGGCAAGA+TGG - chr8.3:19654499-19654518 MS.gene71912:intron 50.0%
ATGAAGCACGGATACGGACA+CGG + chr8.3:19654370-19654389 None:intergenic 50.0%
ATGACCTCTTGCTTTCCCCT+TGG + chr8.3:19655833-19655852 None:intergenic 50.0%
CCCTCGACAATGTTGGAGTT+TGG - chr8.3:19657522-19657541 MS.gene71912:intron 50.0%
GAAGTCCATCCTGCAGTCAA+TGG + chr8.3:19656607-19656626 None:intergenic 50.0%
GATTCCCTTGCCGTCTGTTT+AGG - chr8.3:19657466-19657485 MS.gene71912:CDS 50.0%
GCAAGAGGTCATTTACCACC+GGG - chr8.3:19655841-19655860 MS.gene71912:CDS 50.0%
TCACGTTGGCAACGAGTTAC+TGG - chr8.3:19655781-19655800 MS.gene71912:CDS 50.0%
TCCTCATATTAGGCGTGTCC+CGG - chr8.3:19654324-19654343 MS.gene71912:intron 50.0%
TGGCAACGAGTTACTGGAGT+TGG - chr8.3:19655787-19655806 MS.gene71912:CDS 50.0%
TTGGTCTCCCTCGACAATGT+TGG - chr8.3:19657515-19657534 MS.gene71912:intron 50.0%
TTTCCCACGAAGCCTCTAAC+CGG - chr8.3:19656380-19656399 MS.gene71912:intron 50.0%
! ACTGATGTTTCTACCCGAGG+AGG + chr8.3:19656407-19656426 None:intergenic 50.0%
! ATAGGTCTGGGGTTCAGCAA+AGG - chr8.3:19654479-19654498 MS.gene71912:intron 50.0%
! TCCCCTTCCGGAGTATCAAA+AGG + chr8.3:19654691-19654710 None:intergenic 50.0%
! TGGAGCATGGACAGCAGTTT+TGG - chr8.3:19657496-19657515 MS.gene71912:CDS 50.0%
!! CAAAGAGCAGCTGGTGGATT+TGG - chr8.3:19654628-19654647 MS.gene71912:intron 50.0%
!!! CGCTTCCCATCGATTTTCAC+TGG + chr8.3:19656266-19656285 None:intergenic 50.0%
ACCGGGACACGCCTAATATG+AGG + chr8.3:19654328-19654347 None:intergenic 55.0%
CCAATCCTGCCACTCCAATC+AGG - chr8.3:19656315-19656334 MS.gene71912:intron 55.0%
CCTGATTGGAGTGGCAGGAT+TGG + chr8.3:19656318-19656337 None:intergenic 55.0%
GGTGCTCGTCCAAATCCACA+AGG - chr8.3:19656182-19656201 MS.gene71912:intron 55.0%
GTCAGCAAGCCTGATTGGAG+TGG + chr8.3:19656327-19656346 None:intergenic 55.0%
TATTAGGCGTGTCCCGGTGT+CGG - chr8.3:19654330-19654349 MS.gene71912:intron 55.0%
! ACCTGTTGGGGTACTCCAAG+AGG + chr8.3:19653898-19653917 None:intergenic 55.0%
! GCAGGATGGACTTCGGAGAT+TGG - chr8.3:19656613-19656632 MS.gene71912:intron 55.0%
! TCCTCTTGGAGTACCCCAAC+AGG - chr8.3:19653894-19653913 MS.gene71912:intron 55.0%
! TGTTTCTACCCGAGGAGGTC+CGG + chr8.3:19656402-19656421 None:intergenic 55.0%
!! AGAGCAGCTGGTGGATTTGG+TGG - chr8.3:19654631-19654650 MS.gene71912:intron 55.0%
ACTGACGTGTCTCCGACACC+GGG + chr8.3:19654345-19654364 None:intergenic 60.0%
AGCCTCTAACCGGACCTCCT+CGG - chr8.3:19656390-19656409 MS.gene71912:intron 60.0%
AGGTCCGGTTAGAGGCTTCG+TGG + chr8.3:19656387-19656406 None:intergenic 60.0%
CACTGACGTGTCTCCGACAC+CGG + chr8.3:19654346-19654365 None:intergenic 60.0%
GCAAGCCTGATTGGAGTGGC+AGG + chr8.3:19656323-19656342 None:intergenic 60.0%
GGTCCGGTTAGAGGCTTCGT+GGG + chr8.3:19656386-19656405 None:intergenic 60.0%
! GGTCTGGGGTTCAGCAAAGG+AGG - chr8.3:19654482-19654501 MS.gene71912:intron 60.0%
ACCCGAGGAGGTCCGGTTAG+AGG + chr8.3:19656395-19656414 None:intergenic 65.0%
GCCTCTAACCGGACCTCCTC+GGG - chr8.3:19656391-19656410 MS.gene71912:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 19653778 19657882 19653778 ID=MS.gene71912
chr8.3 mRNA 19653778 19657882 19653778 ID=MS.gene71912.t1;Parent=MS.gene71912
chr8.3 exon 19657745 19657882 19657745 ID=MS.gene71912.t1.exon1;Parent=MS.gene71912.t1
chr8.3 CDS 19657745 19657882 19657745 ID=cds.MS.gene71912.t1;Parent=MS.gene71912.t1
chr8.3 exon 19657420 19657529 19657420 ID=MS.gene71912.t1.exon2;Parent=MS.gene71912.t1
chr8.3 CDS 19657420 19657529 19657420 ID=cds.MS.gene71912.t1;Parent=MS.gene71912.t1
chr8.3 exon 19656907 19657177 19656907 ID=MS.gene71912.t1.exon3;Parent=MS.gene71912.t1
chr8.3 CDS 19656907 19657177 19656907 ID=cds.MS.gene71912.t1;Parent=MS.gene71912.t1
chr8.3 exon 19656662 19656800 19656662 ID=MS.gene71912.t1.exon4;Parent=MS.gene71912.t1
chr8.3 CDS 19656662 19656800 19656662 ID=cds.MS.gene71912.t1;Parent=MS.gene71912.t1
chr8.3 exon 19655743 19656109 19655743 ID=MS.gene71912.t1.exon5;Parent=MS.gene71912.t1
chr8.3 CDS 19655743 19656109 19655743 ID=cds.MS.gene71912.t1;Parent=MS.gene71912.t1
chr8.3 exon 19655132 19655497 19655132 ID=MS.gene71912.t1.exon6;Parent=MS.gene71912.t1
chr8.3 CDS 19655132 19655497 19655132 ID=cds.MS.gene71912.t1;Parent=MS.gene71912.t1
chr8.3 exon 19654965 19655043 19654965 ID=MS.gene71912.t1.exon7;Parent=MS.gene71912.t1
chr8.3 CDS 19654965 19655043 19654965 ID=cds.MS.gene71912.t1;Parent=MS.gene71912.t1
chr8.3 exon 19653973 19654172 19653973 ID=MS.gene71912.t1.exon8;Parent=MS.gene71912.t1
chr8.3 CDS 19653973 19654172 19653973 ID=cds.MS.gene71912.t1;Parent=MS.gene71912.t1
chr8.3 exon 19653778 19653880 19653778 ID=MS.gene71912.t1.exon9;Parent=MS.gene71912.t1
chr8.3 CDS 19653778 19653880 19653778 ID=cds.MS.gene71912.t1;Parent=MS.gene71912.t1
Gene Sequence

>MS.gene71912

ATGGCTTCTTCACCTCTCTTCTTCTTTCTCATCAACATTTTCTTCCTTCTTACACTCTCTTCAGCTGAAGATGCATTTGTTCCCTATGATTTTGAGGTTTCATACATCACTGCTTCTCCTCTTGGAGTACCCCAACAGGTTTTTCTTCTTTCTCTTACTATTTTTGGAAATGGGTATGTTCACTTTTTTACTAACTCACTTTGAATTTACTAAAGTTTCAAACTTTACTTTCAGATCTACATCTAAATAGTAATGTTATAGTTAAACTTGAAAAGGGTTATTGTAAATGTGACTGAGTTATATAGAAAAGATGTGAAGGTTTTTTTTAGTAATGTTTTTCATTGTTTATGTAGGTCATTGCTATCAACAAACAGTTTCCAGGTCCTACTATTAATGTAACCACAAACAACAATGTTGCTGTGAATGTCCACAACAAATTGGATGAAAACCTCCTCATTCATTGGTAGGTTGTTTTGTTGTGGATTATTAGATGTAACTAGTGTAACTAACTGTTTTAACTAACTATTATGTATGAAGCATGGACACTCCTCATATTAGGCGTGTCCCGGTGTCGGAGACACGTCAGTGTCCGTGTCCGTATCCGTGCTTCATAACGTCTACTAACGATTTTTGTTTAAAAAGTTGAAAACTTTGGTTTTGTTAATTGAGCTAAAAGTTTATTTTTTTTATTGGTGGTTGAAATAGGTCTGGGGTTCAGCAAAGGAGGAGTTCATGGCAAGATGGTGTTCTTGGAACAAATTGTCCTATTCCACCAAAATGGAACTGGACTTACCAGTTTCAAGTGAAGGATCAGATTGGAAGTTTCTTCTACTTTCCTTCACTTAATTTTCAAAGAGCAGCTGGTGGATTTGGTGGTTTCATTATAAACAACCGACCCGTCATTTCTGTTCCTTTTGATACTCCGGAAGGGGACATTGTTGTTTTTATTGGCGATTGGTACACACGCAATCACACGGTTAGTTTTGTGTTGTTTGAGTTGAGTTTATGGAAATTTTCTGATTCTGTGTTAGATTAGATTGGATGTTAGATGAGTTAATTAAAGTTTTTTGAAATTAATGTAGGCTTTGAGAAAGGCTCTAGATGATGGAAAAGATCTTGGAATGCCAGATGGTGTTCTCATCAATGGGAAAGGCCCTTATAGATATAATGACACTCTTGTTCCTGATAACATCGATTTTGAACAAATTGATGTCAAACCAGGTAACTTCTTGAAATACAAACTCAACTTTGAATTCTCTGATTTTTTTAGTTATTTACTTTTCAAATACTGATATGGATGTTTTTTGTTTGGTTTTATGATTAATAATTTAGTTATTTGTTTTTCAAATACTGATATGGATGTTTTTTGTTTGATTTTATGTTTAATAATAAATACAAGAGAAGTTCCATGAGTGACTACAAAGAAATAAACTTTAATGTCTCTTGTATACAATTTCTCTAGGCATGGAAACACAATATCACTCACTAATGAATGATAGCTGTTTTGCTTTTAGTAAATTAAGATTAGGCACTCAAAAGGTTCTCTAATGTTGTGCTTCTTAATGCATGGAAACAAAAATAGATTTGTAAGCACTCAAAGTTTTCCTCTATGGTCTTCATATACCTTGACTAATATCTGTTAGTAGAGTACAAAGTGTGTATGTTAGAACAATGAGTTCGGATAGATGTGAGCTTGATGTTATGACATTCTTCAGTCTTGATGATGATTTACCTGTCAAATGTTTCTAATGTTTCTTTGTTAATTTTTAACAGGAAAAACTTACCGACTTCGTGTACATAATGTTGGAATATCAACAAGTCTGAATTTCAGGATTCAGAACCATAACTTACTTCTAGCAGAGACTGAAGGCTCATATACAGTGCAACAGAACTACACTAGCTTAGATATTCATGTTGGACAATCTTATTCTTTTCTGGTAACCATGGATCAGAATGCAAGTTCAGATTACTACATTGTCGCAAGTGCCAGGTTTGTGAATGAATCACGTTGGCAACGAGTTACTGGAGTTGGTATCTTGCACTATTCAAATTCCAAGGGGAAAGCAAGAGGTCATTTACCACCGGGTCCAGATGATCAATTTGACAAAACTTTCTCAATGAACCAAGCAAGATCTATCAGGTCTCTTCATACTCCAGTTCTATAGAATTATATATTATCTTGTCTCATTTACTTACGCTTCGGTTTCGAGCAACTGTCTGAAATTTGTCAATAAGTTATCAACTTTAGAATTCATTAGGTCTCATCCGTGTTGACATATTAAATATGTTGTAATCAAACTTTATACTGTGAAGTTCCACTAATGCAGACTATATAATTGAAAAATATTAGCACTCATTTTTGCAATTCTGTGGTTTATTGTGTAGATGGAACGTATCAGCAAGTGGTGCTCGTCCAAATCCACAAGGATCTTTCAGATATGGTTCCATCAACGTGACAGAGATTTACGTATTGAAAAATAAACCACCAGTGAAAATCGATGGGAAGCGGAGAGCAACACTTAGTGGAATTTCTTTTGCCAATCCTGCCACTCCAATCAGGCTTGCTGACCATTACAAATTAAAGGGAGTATACAAACTTGATTTTCCCACGAAGCCTCTAACCGGACCTCCTCGGGTAGAAACATCAGTAATCAATGGAAGCTTTAGAGGATTTATGGAAATTATACTGCAGAACAATGACACCAAGATGCATACTTATCACTTGAATGGATATGCATTTTTTGTTGTAGGGTAAGATTCTATTCCTTACTTGCATGATGTTACACTTTTACATGTTTTAGCCGTCAGCAACACTCAAAACTTGATCCATTGACTGCAGGATGGACTTCGGAGATTGGTCTGAGAATAGCAGGGGTACATATAACAAGTGGGATGGAATAGCTCGTACTACAGCGCAGGTATATTTTCTGTCTTAGAATGCATGTCGATCAAGCAAAGCTTTACTTGTTTTTAACAAGCTCGACATTCAAACTCCACTCTTTTACAACAAGCGAGCAACCTTCTTTTTTTTTCATAAACCAAACTCATGATTCAAGCATTTGACTTGACTCAACTCGTTTACATCCTTGATTTTCATCATTGACTTTTGTTTTGTTTTTAAAAAATTGAGGGTACTGAGGATGAAATCTAGTTCAGTTGGTCAAAAGAATTTATGGTGCTACATCAAAATGAATCACTTTATCCAACATAGGCTCTGTTTGGTAAACCCAAAAAAAAGAGCTTTTAGCTCTTAGCTTTTAGCTTATAAGCTCATTTGACAAAAAAAGCTCTGTTTGGTAACACTTTAGCTCTGTTTGGTACAACGAGCTTATAGCTTATTTCAGGAGCTTATAAGCTATTTTTCAGAAGCTACTTCAAGTAGCTTTTGAGCTTATAGCTTTTAGCTTCTCATTTTTTCTTCCATATTTACCCTTATTATTCAAAGCAAAAGCTATCAGCTAATTTTACCAAACACTTCAACTAGCTTATCAGCTAAAAGCTATCAGCTAGCTTATCAACTAAAAGCTATCAGCTAGCTTATCAGCTAAAAGTTATCAGCTAGCTTATCAGCTATCAGCTAATTTTACCAAACAGAGCCTTACTATTTGGTTTACTACATGTCTTTCATATGACTTTGTCATAACTGCTATTGCATCATGTATCCTACAAGTTTTATACACAACTATTTGATTCCCTTGCCGTCTGTTTAGGTTTATCCTGGAGCATGGACAGCAGTTTTGGTCTCCCTCGACAATGTTGGAGTTTGGAATCTAAGAACAGAAAACCTTGATTCATGGTATCTTGGTCAAGAAACATACATCAGGGTTGTCAACCCGGAGCCTACTAACAAAACTGAGTTACCGATGCCAGACAATGCCCTTAAATGTGGCAGACTTCAGCATTTGCAAAAGTATGTTACATTATCATTCTTCAGTATGTTAAATTAAAAGTATGTTACATAAAAAAAGTTGTTAAACTTTGATGTAAATTTTCTTGTTTCAGGCCTCAAAAAATTATTTCATCTGCTTCAATCAACGGGAATGGGCTGAAGTTGTTATTCACTTTGGTGATGTTTGTATGTGCCATAATGAACATTTTTCAGTAA
Protein sequence

>MS.gene71912.t1

MASSPLFFFLINIFFLLTLSSAEDAFVPYDFEVSYITASPLGVPQQVIAINKQFPGPTINVTTNNNVAVNVHNKLDENLLIHWSGVQQRRSSWQDGVLGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLNFQRAAGGFGGFIINNRPVISVPFDTPEGDIVVFIGDWYTRNHTALRKALDDGKDLGMPDGVLINGKGPYRYNDTLVPDNIDFEQIDVKPGKTYRLRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASSDYYIVASARFVNESRWQRVTGVGILHYSNSKGKARGHLPPGPDDQFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEIYVLKNKPPVKIDGKRRATLSGISFANPATPIRLADHYKLKGVYKLDFPTKPLTGPPRVETSVINGSFRGFMEIILQNNDTKMHTYHLNGYAFFVVGMDFGDWSENSRGTYNKWDGIARTTAQVYPGAWTAVLVSLDNVGVWNLRTENLDSWYLGQETYIRVVNPEPTNKTELPMPDNALKCGRLQHLQKPQKIISSASINGNGLKLLFTLVMFVCAIMNIFQ