Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71929.t1 | XP_003608731.1 | 98.3 | 301 | 5 | 0 | 1 | 301 | 50 | 350 | 1.50E-160 | 575.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71929.t1 | P22989 | 66.2 | 302 | 101 | 1 | 1 | 301 | 43 | 344 | 7.0e-111 | 401.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71929.t1 | G7JIY5 | 98.3 | 301 | 5 | 0 | 1 | 301 | 50 | 350 | 1.1e-160 | 575.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene71929 | 0.833368 | 5.55E-56 | -1.69E-46 |
| MS.gene052965 | MS.gene71929 | 0.804556 | 2.04E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene71929 | -0.807309 | 5.38E-50 | -1.69E-46 |
| MS.gene059511 | MS.gene71929 | -0.805712 | 1.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71929.t1 | MTR_4g101130 | 98.339 | 301 | 5 | 0 | 1 | 301 | 50 | 350 | 0.0 | 601 |
| MS.gene71929.t1 | MTR_5g012390 | 85.714 | 301 | 43 | 0 | 1 | 301 | 50 | 350 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71929.t1 | AT4G17260 | 80.066 | 301 | 60 | 0 | 1 | 301 | 53 | 353 | 0.0 | 508 |
| MS.gene71929.t1 | AT2G22780 | 24.111 | 253 | 172 | 7 | 56 | 301 | 110 | 349 | 3.50e-11 | 63.5 |
Find 105 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGGCGCGTTCCATTATT+AGG | 0.155648 | 8.3:-19925600 | MS.gene71929:CDS |
| TACATCGCATGGAAGCTTTC+TGG | 0.223266 | 8.3:-19926801 | MS.gene71929:CDS |
| GTCTAAAAGGTTACACTTCT+TGG | 0.242478 | 8.3:-19925645 | MS.gene71929:CDS |
| CATCGGGTCGGGTACCAATT+TGG | 0.245882 | 8.3:-19926760 | MS.gene71929:CDS |
| TTTCCTTTGGTCCCTAATAA+TGG | 0.266030 | 8.3:+19925588 | None:intergenic |
| GAGGAATCTTTCTCTGTTCC+AGG | 0.273770 | 8.3:-19926901 | MS.gene71929:CDS |
| AATTCACCCTGTGTCTGTTT+TGG | 0.299725 | 8.3:-19925566 | MS.gene71929:CDS |
| TTTCTGGGTTTCCTTCTAAT+CGG | 0.317162 | 8.3:-19926785 | MS.gene71929:CDS |
| TATGAAGTCATCAGTCTAAA+AGG | 0.318657 | 8.3:-19925658 | MS.gene71929:CDS |
| CTTGGCGCGTTCCATTATTA+GGG | 0.327453 | 8.3:-19925599 | MS.gene71929:CDS |
| ATTTGGATTCATCTCGGTTT+CGG | 0.328348 | 8.3:-19926743 | MS.gene71929:CDS |
| GCCATTGGGTACTCGGTGGC+TGG | 0.359042 | 8.3:-19925622 | MS.gene71929:CDS |
| TTTAAATACCCAACTGAGTC+TGG | 0.359309 | 8.3:+19925392 | None:intergenic |
| ACATCGCATGGAAGCTTTCT+GGG | 0.367928 | 8.3:-19926800 | MS.gene71929:CDS |
| GACCCGATGACCCGATTAGA+AGG | 0.368385 | 8.3:+19926774 | None:intergenic |
| GGATTCTGCTAAAACTATCT+TGG | 0.379469 | 8.3:-19925419 | MS.gene71929:CDS |
| TGGGTACTCGGTGGCTGGCT+TGG | 0.388620 | 8.3:-19925617 | MS.gene71929:CDS |
| AAACCGAGATGAATCCAAAT+TGG | 0.390309 | 8.3:+19926746 | None:intergenic |
| CATCTCGCCGCGGAGTTTGT+CGG | 0.392604 | 8.3:+19927070 | None:intergenic |
| TTCCTTCTAATCGGGTCATC+GGG | 0.399644 | 8.3:-19926776 | MS.gene71929:CDS |
| CCTCCTCTTCCAAGCTGTGC+TGG | 0.408953 | 8.3:+19925496 | None:intergenic |
| ATCTCGCCGCGGAGTTTGTC+GGG | 0.409424 | 8.3:+19927071 | None:intergenic |
| ATGAGGAGGAACAAAGGCTT+AGG | 0.410444 | 8.3:-19925441 | MS.gene71929:CDS |
| GGTCAACGCTCAGGATGTTC+AGG | 0.411810 | 8.3:-19926697 | MS.gene71929:intron |
| TTCTTGGGCCATTGGGTACT+CGG | 0.413662 | 8.3:-19925629 | MS.gene71929:CDS |
| TCTAATCGGGTCATCGGGTC+GGG | 0.422317 | 8.3:-19926771 | MS.gene71929:CDS |
| TTCTGGGTTTCCTTCTAATC+GGG | 0.423028 | 8.3:-19926784 | MS.gene71929:CDS |
| ATGTAGGTAAGAACATCAAC+GGG | 0.425256 | 8.3:+19926819 | None:intergenic |
| TTTCCTTCTAATCGGGTCAT+CGG | 0.428046 | 8.3:-19926777 | MS.gene71929:CDS |
| GGTTACACTTCTTGGGCCAT+TGG | 0.429243 | 8.3:-19925637 | MS.gene71929:CDS |
| ACGATGATCAGAACCGTTTC+CGG | 0.432903 | 8.3:+19926849 | None:intergenic |
| TCTAAAAGGTTACACTTCTT+GGG | 0.435111 | 8.3:-19925644 | MS.gene71929:CDS |
| CGTCGGTGAGGTCTTGAGTT+AGG | 0.435609 | 8.3:+19927117 | None:intergenic |
| GGCTCGTTACTCGCCGGAAA+CGG | 0.437337 | 8.3:-19926862 | MS.gene71929:CDS |
| TTCTAATCGGGTCATCGGGT+CGG | 0.439376 | 8.3:-19926772 | MS.gene71929:CDS |
| GTTACACTTCTTGGGCCATT+GGG | 0.447787 | 8.3:-19925636 | MS.gene71929:CDS |
| CATGCATAGTAGGGGAGCAC+GGG | 0.454511 | 8.3:-19925813 | MS.gene71929:CDS |
| TTGGTGCAGGCATGCATAGT+AGG | 0.460381 | 8.3:-19925823 | MS.gene71929:intron |
| GAACATCCTGAGCGTTGACC+TGG | 0.466613 | 8.3:+19926700 | None:intergenic |
| CTTGGAAGAGGAGGGGTGCT+TGG | 0.474117 | 8.3:-19925487 | MS.gene71929:CDS |
| GAGATCGGAGCCAGCAGTAA+CGG | 0.484502 | 8.3:+19926983 | None:intergenic |
| TGGTGCAGGCATGCATAGTA+GGG | 0.501326 | 8.3:-19925822 | MS.gene71929:intron |
| ACCGATCTGCCTTGCACCGG+CGG | 0.505308 | 8.3:+19926950 | None:intergenic |
| TTGGAGGTCCAGACTCAGTT+GGG | 0.507271 | 8.3:-19925400 | MS.gene71929:CDS |
| CCTCATTGCTGATCACCTCC+AGG | 0.512139 | 8.3:-19926718 | MS.gene71929:CDS |
| GTTGAATACTCCGTTACTGC+TGG | 0.512854 | 8.3:-19926993 | MS.gene71929:CDS |
| GCATGCATAGTAGGGGAGCA+CGG | 0.515411 | 8.3:-19925814 | MS.gene71929:CDS |
| CTCATTATTCATGTGCACAT+TGG | 0.516320 | 8.3:+19925459 | None:intergenic |
| GTATTGTCACCGCCGGTGCA+AGG | 0.516525 | 8.3:-19926959 | MS.gene71929:CDS |
| TCACCTCCAGGTCAACGCTC+AGG | 0.517562 | 8.3:-19926706 | MS.gene71929:CDS |
| CCCTTTGGCTCGTTACTCGC+CGG | 0.519160 | 8.3:-19926868 | MS.gene71929:CDS |
| TGGTCTAGCATCAGCATTGG+TGG | 0.521752 | 8.3:-19925772 | MS.gene71929:CDS |
| TGAGGAGGAACAAAGGCTTA+GGG | 0.530899 | 8.3:-19925440 | MS.gene71929:CDS |
| TTGCCAGCACAGCTTGGAAG+AGG | 0.536651 | 8.3:-19925499 | MS.gene71929:CDS |
| CTTGGAGGTCCAGACTCAGT+TGG | 0.544227 | 8.3:-19925401 | MS.gene71929:CDS |
| TTCTGCTAAAACTATCTTGG+AGG | 0.545697 | 8.3:-19925416 | MS.gene71929:CDS |
| CCGGCGAGTAACGAGCCAAA+GGG | 0.546843 | 8.3:+19926868 | None:intergenic |
| ACCGCCGGTGCAAGGCAGAT+CGG | 0.553456 | 8.3:-19926951 | MS.gene71929:CDS |
| ATGTTCTTACCTACATCGCA+TGG | 0.553838 | 8.3:-19926812 | MS.gene71929:CDS |
| CCAGCACAGCTTGGAAGAGG+AGG | 0.555853 | 8.3:-19925496 | MS.gene71929:CDS |
| CCCTTAGCCAAAACAGACAC+AGG | 0.556926 | 8.3:+19925559 | None:intergenic |
| GGCAGATCGGTGGTGAGTCT+AGG | 0.557502 | 8.3:-19926938 | MS.gene71929:CDS |
| TGCATATGAGAAAGAAACGC+TGG | 0.561783 | 8.3:-19925713 | MS.gene71929:CDS |
| CAGCACAGCTTGGAAGAGGA+GGG | 0.569000 | 8.3:-19925495 | MS.gene71929:CDS |
| GGTAAGAACATCAACGGGGT+TGG | 0.569302 | 8.3:+19926824 | None:intergenic |
| TTGAGCTTGCCAGCACAGCT+TGG | 0.573311 | 8.3:-19925505 | MS.gene71929:CDS |
| AGAAAGCTTCCATGCGATGT+AGG | 0.573366 | 8.3:+19926803 | None:intergenic |
| GTACCAATTTGGATTCATCT+CGG | 0.575971 | 8.3:-19926749 | MS.gene71929:CDS |
| TCCGGCGAGTAACGAGCCAA+AGG | 0.577653 | 8.3:+19926867 | None:intergenic |
| GGTGAGGTCTTGAGTTAGGA+TGG | 0.578230 | 8.3:+19927121 | None:intergenic |
| AGTTAGGATGGTCTGAGCAA+TGG | 0.584206 | 8.3:+19927133 | None:intergenic |
| AGCACAGCTTGGAAGAGGAG+GGG | 0.586218 | 8.3:-19925494 | MS.gene71929:CDS |
| GGCGGTGACAATACAGAGAT+CGG | 0.590044 | 8.3:+19926968 | None:intergenic |
| TTGTGGTCTAGCATCAGCAT+TGG | 0.596257 | 8.3:-19925775 | MS.gene71929:CDS |
| ACCACCGATCTGCCTTGCAC+CGG | 0.601852 | 8.3:+19926947 | None:intergenic |
| TGAATAATGAGGAGGAACAA+AGG | 0.605881 | 8.3:-19925447 | MS.gene71929:CDS |
| GGGATAGTTCAGTGGCATTG+TGG | 0.607315 | 8.3:-19925792 | MS.gene71929:CDS |
| CAATGTGCACATGAATAATG+AGG | 0.607609 | 8.3:-19925458 | MS.gene71929:CDS |
| CTAGGCTTAATCTTCTTCAG+AGG | 0.607829 | 8.3:-19926920 | MS.gene71929:CDS |
| GCCAGCCACCGAGTACCCAA+TGG | 0.611646 | 8.3:+19925621 | None:intergenic |
| CGGAGGAGTTGATCTTAACA+CGG | 0.616884 | 8.3:+19927015 | None:intergenic |
| GCCGGTGCAAGGCAGATCGG+TGG | 0.633288 | 8.3:-19926948 | MS.gene71929:CDS |
| AGTTGATCTTAACACGGGGA+AGG | 0.633694 | 8.3:+19927021 | None:intergenic |
| GTTCCATTATTAGGGACCAA+AGG | 0.633706 | 8.3:-19925591 | MS.gene71929:CDS |
| AGCAGTAACGGAGTATTCAA+CGG | 0.634943 | 8.3:+19926995 | None:intergenic |
| GATGTAGGTAAGAACATCAA+CGG | 0.637519 | 8.3:+19926818 | None:intergenic |
| GGAGGAGTTGATCTTAACAC+GGG | 0.638442 | 8.3:+19927016 | None:intergenic |
| GATCTCTGTATTGTCACCGC+CGG | 0.642113 | 8.3:-19926966 | MS.gene71929:CDS |
| CGATGACGAGCTCGTCGGTG+AGG | 0.651455 | 8.3:+19927105 | None:intergenic |
| AACAAACCCGACAAACTCCG+CGG | 0.654627 | 8.3:-19927077 | MS.gene71929:CDS |
| GGCGAGTAACGAGCCAAAGG+GGG | 0.657545 | 8.3:+19926870 | None:intergenic |
| CCTGGAGGTGATCAGCAATG+AGG | 0.659064 | 8.3:+19926718 | None:intergenic |
| ATGCATAGTAGGGGAGCACG+GGG | 0.668532 | 8.3:-19925812 | MS.gene71929:CDS |
| TTGGGCCATTGGGTACTCGG+TGG | 0.669464 | 8.3:-19925626 | MS.gene71929:CDS |
| CGGCGAGTAACGAGCCAAAG+GGG | 0.669624 | 8.3:+19926869 | None:intergenic |
| CCTTAGCCAAAACAGACACA+GGG | 0.678012 | 8.3:+19925560 | None:intergenic |
| GTCGACGATGACGAGCTCGT+CGG | 0.681636 | 8.3:+19927100 | None:intergenic |
| TGTGCACATGAATAATGAGG+AGG | 0.692647 | 8.3:-19925455 | MS.gene71929:CDS |
| GGAGCACGGGGATAGTTCAG+TGG | 0.698387 | 8.3:-19925800 | MS.gene71929:CDS |
| CATCCTGAGCGTTGACCTGG+AGG | 0.703641 | 8.3:+19926703 | None:intergenic |
| GGTGCAGGCATGCATAGTAG+GGG | 0.709667 | 8.3:-19925821 | MS.gene71929:intron |
| GAAGATCAAGCATCTCGCCG+CGG | 0.743598 | 8.3:+19927060 | None:intergenic |
| AGTAACGGAGTATTCAACGG+AGG | 0.760315 | 8.3:+19926998 | None:intergenic |
| GAGGAGTTGATCTTAACACG+GGG | 0.771491 | 8.3:+19927017 | None:intergenic |
| TGTAGGTAAGAACATCAACG+GGG | 0.839564 | 8.3:+19926820 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTAAATATGAGACAAT+TGG | + | chr8.3:19926552-19926571 | None:intergenic | 20.0% |
| !!! | AATTTTCATTTCGTGTAATT+TGG | - | chr8.3:19926524-19926543 | MS.gene71929:intron | 20.0% |
| !!! | ATTTTCATTTCGTGTAATTT+GGG | - | chr8.3:19926525-19926544 | MS.gene71929:intron | 20.0% |
| !!! | TTATTTTCATGATGATATGT+TGG | - | chr8.3:19925921-19925940 | MS.gene71929:intron | 20.0% |
| !!! | TTCAAATGTTTTTGAAGTAA+TGG | - | chr8.3:19926304-19926323 | MS.gene71929:intron | 20.0% |
| ! | AACTTATGTTGATCTCTATT+CGG | + | chr8.3:19926385-19926404 | None:intergenic | 25.0% |
| ! | CTAAAAATTTCTACTCCAAA+AGG | + | chr8.3:19926115-19926134 | None:intergenic | 25.0% |
| ! | GTCAAATTACAAATTAGTTC+CGG | - | chr8.3:19926028-19926047 | MS.gene71929:intron | 25.0% |
| ! | GTTTATTCACTCTTAATTCA+GGG | - | chr8.3:19926589-19926608 | MS.gene71929:intron | 25.0% |
| ! | TGTTTATTCACTCTTAATTC+AGG | - | chr8.3:19926588-19926607 | MS.gene71929:intron | 25.0% |
| ! | TTTATTCACTCTTAATTCAG+GGG | - | chr8.3:19926590-19926609 | MS.gene71929:intron | 25.0% |
| !! | AGTGTGAAATAAAGTGTTAT+TGG | - | chr8.3:19926688-19926707 | MS.gene71929:intron | 25.0% |
| !!! | AATTACTATTTTTGAGCTCT+AGG | - | chr8.3:19925989-19926008 | MS.gene71929:intron | 25.0% |
| !!! | ATTACTATTTTTGAGCTCTA+GGG | - | chr8.3:19925990-19926009 | MS.gene71929:intron | 25.0% |
| !!! | TTGGATGAATATTTTTGACT+GGG | - | chr8.3:19925940-19925959 | MS.gene71929:intron | 25.0% |
| ATATCAATACATAGTGTCTC+CGG | + | chr8.3:19926050-19926069 | None:intergenic | 30.0% | |
| GTCTCATATTTACAATTTCG+AGG | - | chr8.3:19926555-19926574 | MS.gene71929:intron | 30.0% | |
| GTTCTATTAAACTGACAGAA+TGG | - | chr8.3:19926467-19926486 | MS.gene71929:intron | 30.0% | |
| TATGAAGTCATCAGTCTAAA+AGG | - | chr8.3:19926872-19926891 | MS.gene71929:CDS | 30.0% | |
| TCTAAAAGGTTACACTTCTT+GGG | - | chr8.3:19926886-19926905 | MS.gene71929:CDS | 30.0% | |
| TTCACTATAGAAAGTGAGAA+AGG | - | chr8.3:19926661-19926680 | MS.gene71929:intron | 30.0% | |
| ! | AAATAAAGTGTTATTGGTGC+AGG | - | chr8.3:19926694-19926713 | MS.gene71929:intron | 30.0% |
| ! | ATTGACGATCTTTAAGTTCA+AGG | - | chr8.3:19926498-19926517 | MS.gene71929:intron | 30.0% |
| ! | TCGGTTTGACATAAAAACAA+GGG | - | chr8.3:19926173-19926192 | MS.gene71929:intron | 30.0% |
| ! | TGTTGTTTAGTTTCATGAAC+TGG | + | chr8.3:19926352-19926371 | None:intergenic | 30.0% |
| !! | GTTGGATGAATATTTTTGAC+TGG | - | chr8.3:19925939-19925958 | MS.gene71929:intron | 30.0% |
| !! | GTTGTTTCTCCAAAAAACTA+AGG | + | chr8.3:19926793-19926812 | None:intergenic | 30.0% |
| !!! | TATTCCTGTCCTTAGTTTTT+TGG | - | chr8.3:19926781-19926800 | MS.gene71929:CDS | 30.0% |
| !!! | TTTTGAAGTAATGGTCCATT+GGG | - | chr8.3:19926313-19926332 | MS.gene71929:intron | 30.0% |
| !!! | TTTTTGAAGTAATGGTCCAT+TGG | - | chr8.3:19926312-19926331 | MS.gene71929:intron | 30.0% |
| AAACCGAGATGAATCCAAAT+TGG | + | chr8.3:19925787-19925806 | None:intergenic | 35.0% | |
| ATGTAGGTAAGAACATCAAC+GGG | + | chr8.3:19925714-19925733 | None:intergenic | 35.0% | |
| ATTTGGATTCATCTCGGTTT+CGG | - | chr8.3:19925787-19925806 | MS.gene71929:CDS | 35.0% | |
| CAATGTGCACATGAATAATG+AGG | - | chr8.3:19927072-19927091 | MS.gene71929:CDS | 35.0% | |
| CTCACTTTCTATAGTGAACA+CGG | + | chr8.3:19926659-19926678 | None:intergenic | 35.0% | |
| CTCATTATTCATGTGCACAT+TGG | + | chr8.3:19927074-19927093 | None:intergenic | 35.0% | |
| GATGTAGGTAAGAACATCAA+CGG | + | chr8.3:19925715-19925734 | None:intergenic | 35.0% | |
| GGATTCTGCTAAAACTATCT+TGG | - | chr8.3:19927111-19927130 | MS.gene71929:CDS | 35.0% | |
| GTACCAATTTGGATTCATCT+CGG | - | chr8.3:19925781-19925800 | MS.gene71929:CDS | 35.0% | |
| GTCTAAAAGGTTACACTTCT+TGG | - | chr8.3:19926885-19926904 | MS.gene71929:CDS | 35.0% | |
| TGAATAATGAGGAGGAACAA+AGG | - | chr8.3:19927083-19927102 | MS.gene71929:CDS | 35.0% | |
| TTCTCCAAAAAACTAAGGAC+AGG | + | chr8.3:19926788-19926807 | None:intergenic | 35.0% | |
| TTCTGCTAAAACTATCTTGG+AGG | - | chr8.3:19927114-19927133 | MS.gene71929:CDS | 35.0% | |
| TTTCCTTTGGTCCCTAATAA+TGG | + | chr8.3:19926945-19926964 | None:intergenic | 35.0% | |
| TTTCTGGGTTTCCTTCTAAT+CGG | - | chr8.3:19925745-19925764 | MS.gene71929:CDS | 35.0% | |
| ! | CAACGATTGAAGACATGTTT+TGG | + | chr8.3:19926274-19926293 | None:intergenic | 35.0% |
| ! | TTTGAAGTAATGGTCCATTG+GGG | - | chr8.3:19926314-19926333 | MS.gene71929:intron | 35.0% |
| !! | GTCGGTTTGACATAAAAACA+AGG | - | chr8.3:19926172-19926191 | MS.gene71929:intron | 35.0% |
| ATGTTCTTACCTACATCGCA+TGG | - | chr8.3:19925718-19925737 | MS.gene71929:CDS | 40.0% | |
| ATTAAGTCATCGTCTCAACG+AGG | + | chr8.3:19926148-19926167 | None:intergenic | 40.0% | |
| CGTTGAGACGATGACTTAAT+TGG | - | chr8.3:19926148-19926167 | MS.gene71929:intron | 40.0% | |
| CTAGGCTTAATCTTCTTCAG+AGG | - | chr8.3:19925610-19925629 | MS.gene71929:CDS | 40.0% | |
| GACGATGACTTAATTGGTGT+CGG | - | chr8.3:19926154-19926173 | MS.gene71929:intron | 40.0% | |
| GTTCCATTATTAGGGACCAA+AGG | - | chr8.3:19926939-19926958 | MS.gene71929:CDS | 40.0% | |
| TGCATATGAGAAAGAAACGC+TGG | - | chr8.3:19926817-19926836 | MS.gene71929:CDS | 40.0% | |
| TGTAGGTAAGAACATCAACG+GGG | + | chr8.3:19925713-19925732 | None:intergenic | 40.0% | |
| TGTGCACATGAATAATGAGG+AGG | - | chr8.3:19927075-19927094 | MS.gene71929:CDS | 40.0% | |
| TTCTGGGTTTCCTTCTAATC+GGG | - | chr8.3:19925746-19925765 | MS.gene71929:CDS | 40.0% | |
| TTTCCTTCTAATCGGGTCAT+CGG | - | chr8.3:19925753-19925772 | MS.gene71929:CDS | 40.0% | |
| ! | AATTCACCCTGTGTCTGTTT+TGG | - | chr8.3:19926964-19926983 | MS.gene71929:CDS | 40.0% |
| ! | ACACAGGGTGAATTTTCCTT+TGG | + | chr8.3:19926958-19926977 | None:intergenic | 40.0% |
| ! | AGCAGTAACGGAGTATTCAA+CGG | + | chr8.3:19925538-19925557 | None:intergenic | 40.0% |
| !!! | GTTTTGGCTAAGGGGTTTTA+TGG | - | chr8.3:19926980-19926999 | MS.gene71929:CDS | 40.0% |
| ACATCGCATGGAAGCTTTCT+GGG | - | chr8.3:19925730-19925749 | MS.gene71929:CDS | 45.0% | |
| ACGATGATCAGAACCGTTTC+CGG | + | chr8.3:19925684-19925703 | None:intergenic | 45.0% | |
| AGAAAGCTTCCATGCGATGT+AGG | + | chr8.3:19925730-19925749 | None:intergenic | 45.0% | |
| AGTTAGGATGGTCTGAGCAA+TGG | + | chr8.3:19925400-19925419 | None:intergenic | 45.0% | |
| AGTTGATCTTAACACGGGGA+AGG | + | chr8.3:19925512-19925531 | None:intergenic | 45.0% | |
| ATGAGGAGGAACAAAGGCTT+AGG | - | chr8.3:19927089-19927108 | MS.gene71929:CDS | 45.0% | |
| CCTTAGCCAAAACAGACACA+GGG | + | chr8.3:19926973-19926992 | None:intergenic | 45.0% | |
| CTCCAAAAGGCAACATACGT+TGG | + | chr8.3:19926102-19926121 | None:intergenic | 45.0% | |
| CTTGGCGCGTTCCATTATTA+GGG | - | chr8.3:19926931-19926950 | MS.gene71929:CDS | 45.0% | |
| GAGGAATCTTTCTCTGTTCC+AGG | - | chr8.3:19925629-19925648 | MS.gene71929:CDS | 45.0% | |
| GGCTGAGACGCTAATCTAAT+TGG | + | chr8.3:19926219-19926238 | None:intergenic | 45.0% | |
| GTTACACTTCTTGGGCCATT+GGG | - | chr8.3:19926894-19926913 | MS.gene71929:CDS | 45.0% | |
| GTTGAATACTCCGTTACTGC+TGG | - | chr8.3:19925537-19925556 | MS.gene71929:CDS | 45.0% | |
| TACATCGCATGGAAGCTTTC+TGG | - | chr8.3:19925729-19925748 | MS.gene71929:CDS | 45.0% | |
| TGAGGAGGAACAAAGGCTTA+GGG | - | chr8.3:19927090-19927109 | MS.gene71929:CDS | 45.0% | |
| TTCCTTCTAATCGGGTCATC+GGG | - | chr8.3:19925754-19925773 | MS.gene71929:CDS | 45.0% | |
| TTGTGGTCTAGCATCAGCAT+TGG | - | chr8.3:19926755-19926774 | MS.gene71929:CDS | 45.0% | |
| ! | AGTAACGGAGTATTCAACGG+AGG | + | chr8.3:19925535-19925554 | None:intergenic | 45.0% |
| ! | CACCAACGTATGTTGCCTTT+TGG | - | chr8.3:19926097-19926116 | MS.gene71929:intron | 45.0% |
| ! | CGGAGGAGTTGATCTTAACA+CGG | + | chr8.3:19925518-19925537 | None:intergenic | 45.0% |
| ! | GAGGAGTTGATCTTAACACG+GGG | + | chr8.3:19925516-19925535 | None:intergenic | 45.0% |
| ! | GGAGGAGTTGATCTTAACAC+GGG | + | chr8.3:19925517-19925536 | None:intergenic | 45.0% |
| !! | GCTAAGGGGTTTTATGGCAT+AGG | - | chr8.3:19926986-19927005 | MS.gene71929:CDS | 45.0% |
| !!! | CCTGTGTCTGTTTTGGCTAA+GGG | - | chr8.3:19926971-19926990 | MS.gene71929:CDS | 45.0% |
| !!! | CTGTGTCTGTTTTGGCTAAG+GGG | - | chr8.3:19926972-19926991 | MS.gene71929:CDS | 45.0% |
| AACAAACCCGACAAACTCCG+CGG | - | chr8.3:19925453-19925472 | MS.gene71929:CDS | 50.0% | |
| CCAGGCAATTATACCCCCTT+TGG | - | chr8.3:19925647-19925666 | MS.gene71929:CDS | 50.0% | |
| CCCTTAGCCAAAACAGACAC+AGG | + | chr8.3:19926974-19926993 | None:intergenic | 50.0% | |
| CTCAGCCATGAGAACGAGAA+GGG | - | chr8.3:19926232-19926251 | MS.gene71929:intron | 50.0% | |
| GATCTCTGTATTGTCACCGC+CGG | - | chr8.3:19925564-19925583 | MS.gene71929:CDS | 50.0% | |
| GCTTGGCGCGTTCCATTATT+AGG | - | chr8.3:19926930-19926949 | MS.gene71929:CDS | 50.0% | |
| GGCAAGTTCTATGTCCCCAA+TGG | + | chr8.3:19926331-19926350 | None:intergenic | 50.0% | |
| GGCGGTGACAATACAGAGAT+CGG | + | chr8.3:19925565-19925584 | None:intergenic | 50.0% | |
| GGGATAGTTCAGTGGCATTG+TGG | - | chr8.3:19926738-19926757 | MS.gene71929:CDS | 50.0% | |
| GGTAAGAACATCAACGGGGT+TGG | + | chr8.3:19925709-19925728 | None:intergenic | 50.0% | |
| GGTGAGGTCTTGAGTTAGGA+TGG | + | chr8.3:19925412-19925431 | None:intergenic | 50.0% | |
| GGTTACACTTCTTGGGCCAT+TGG | - | chr8.3:19926893-19926912 | MS.gene71929:CDS | 50.0% | |
| TCTCAGCCATGAGAACGAGA+AGG | - | chr8.3:19926231-19926250 | MS.gene71929:intron | 50.0% | |
| TGGTGCAGGCATGCATAGTA+GGG | - | chr8.3:19926708-19926727 | MS.gene71929:CDS | 50.0% | |
| TGTAGCCCTTCTCGTTCTCA+TGG | + | chr8.3:19926240-19926259 | None:intergenic | 50.0% | |
| TTCTAATCGGGTCATCGGGT+CGG | - | chr8.3:19925758-19925777 | MS.gene71929:CDS | 50.0% | |
| TTCTTGGGCCATTGGGTACT+CGG | - | chr8.3:19926901-19926920 | MS.gene71929:CDS | 50.0% | |
| TTGGAGGTCCAGACTCAGTT+GGG | - | chr8.3:19927130-19927149 | MS.gene71929:CDS | 50.0% | |
| TTGGTGCAGGCATGCATAGT+AGG | - | chr8.3:19926707-19926726 | MS.gene71929:CDS | 50.0% | |
| ! | CCAAAGGGGGTATAATTGCC+TGG | + | chr8.3:19925650-19925669 | None:intergenic | 50.0% |
| ! | TGGTCTAGCATCAGCATTGG+TGG | - | chr8.3:19926758-19926777 | MS.gene71929:CDS | 50.0% |
| !!! | CCCTGTGTCTGTTTTGGCTA+AGG | - | chr8.3:19926970-19926989 | MS.gene71929:CDS | 50.0% |
| AGCACAGCTTGGAAGAGGAG+GGG | - | chr8.3:19927036-19927055 | MS.gene71929:CDS | 55.0% | |
| CAGCACAGCTTGGAAGAGGA+GGG | - | chr8.3:19927035-19927054 | MS.gene71929:CDS | 55.0% | |
| CATCGGGTCGGGTACCAATT+TGG | - | chr8.3:19925770-19925789 | MS.gene71929:CDS | 55.0% | |
| CCTCATTGCTGATCACCTCC+AGG | - | chr8.3:19925812-19925831 | MS.gene71929:CDS | 55.0% | |
| CCTGGAGGTGATCAGCAATG+AGG | + | chr8.3:19925815-19925834 | None:intergenic | 55.0% | |
| CGTCGGTGAGGTCTTGAGTT+AGG | + | chr8.3:19925416-19925435 | None:intergenic | 55.0% | |
| CTTGGAGGTCCAGACTCAGT+TGG | - | chr8.3:19927129-19927148 | MS.gene71929:CDS | 55.0% | |
| GAAGATCAAGCATCTCGCCG+CGG | + | chr8.3:19925473-19925492 | None:intergenic | 55.0% | |
| GACCCGATGACCCGATTAGA+AGG | + | chr8.3:19925759-19925778 | None:intergenic | 55.0% | |
| GAGATCGGAGCCAGCAGTAA+CGG | + | chr8.3:19925550-19925569 | None:intergenic | 55.0% | |
| GCATGCATAGTAGGGGAGCA+CGG | - | chr8.3:19926716-19926735 | MS.gene71929:CDS | 55.0% | |
| GGTCAACGCTCAGGATGTTC+AGG | - | chr8.3:19925833-19925852 | MS.gene71929:intron | 55.0% | |
| GGTGCAGGCATGCATAGTAG+GGG | - | chr8.3:19926709-19926728 | MS.gene71929:CDS | 55.0% | |
| TCTAATCGGGTCATCGGGTC+GGG | - | chr8.3:19925759-19925778 | MS.gene71929:CDS | 55.0% | |
| TTGAGCTTGCCAGCACAGCT+TGG | - | chr8.3:19927025-19927044 | MS.gene71929:CDS | 55.0% | |
| TTGCCAGCACAGCTTGGAAG+AGG | - | chr8.3:19927031-19927050 | MS.gene71929:CDS | 55.0% | |
| ! | ATGCATAGTAGGGGAGCACG+GGG | - | chr8.3:19926718-19926737 | MS.gene71929:CDS | 55.0% |
| ! | CATGCATAGTAGGGGAGCAC+GGG | - | chr8.3:19926717-19926736 | MS.gene71929:CDS | 55.0% |
| !! | GAACATCCTGAGCGTTGACC+TGG | + | chr8.3:19925833-19925852 | None:intergenic | 55.0% |
| ACCACCGATCTGCCTTGCAC+CGG | + | chr8.3:19925586-19925605 | None:intergenic | 60.0% | |
| ATCTCGCCGCGGAGTTTGTC+GGG | + | chr8.3:19925462-19925481 | None:intergenic | 60.0% | |
| CATCTCGCCGCGGAGTTTGT+CGG | + | chr8.3:19925463-19925482 | None:intergenic | 60.0% | |
| CCAGCACAGCTTGGAAGAGG+AGG | - | chr8.3:19927034-19927053 | MS.gene71929:CDS | 60.0% | |
| CCGGCGAGTAACGAGCCAAA+GGG | + | chr8.3:19925665-19925684 | None:intergenic | 60.0% | |
| CCTCCTCTTCCAAGCTGTGC+TGG | + | chr8.3:19927037-19927056 | None:intergenic | 60.0% | |
| CGGCGAGTAACGAGCCAAAG+GGG | + | chr8.3:19925664-19925683 | None:intergenic | 60.0% | |
| GGAGCACGGGGATAGTTCAG+TGG | - | chr8.3:19926730-19926749 | MS.gene71929:CDS | 60.0% | |
| GGCAGATCGGTGGTGAGTCT+AGG | - | chr8.3:19925592-19925611 | MS.gene71929:CDS | 60.0% | |
| GGCGAGTAACGAGCCAAAGG+GGG | + | chr8.3:19925663-19925682 | None:intergenic | 60.0% | |
| GGCTCGTTACTCGCCGGAAA+CGG | - | chr8.3:19925668-19925687 | MS.gene71929:CDS | 60.0% | |
| GTATTGTCACCGCCGGTGCA+AGG | - | chr8.3:19925571-19925590 | MS.gene71929:CDS | 60.0% | |
| GTCGACGATGACGAGCTCGT+CGG | + | chr8.3:19925433-19925452 | None:intergenic | 60.0% | |
| TCACCTCCAGGTCAACGCTC+AGG | - | chr8.3:19925824-19925843 | MS.gene71929:intron | 60.0% | |
| TCCGGCGAGTAACGAGCCAA+AGG | + | chr8.3:19925666-19925685 | None:intergenic | 60.0% | |
| TTGGGCCATTGGGTACTCGG+TGG | - | chr8.3:19926904-19926923 | MS.gene71929:CDS | 60.0% | |
| ! | CCCTTTGGCTCGTTACTCGC+CGG | - | chr8.3:19925662-19925681 | MS.gene71929:CDS | 60.0% |
| !! | CATCCTGAGCGTTGACCTGG+AGG | + | chr8.3:19925830-19925849 | None:intergenic | 60.0% |
| !! | CTTGGAAGAGGAGGGGTGCT+TGG | - | chr8.3:19927043-19927062 | MS.gene71929:CDS | 60.0% |
| ACCGATCTGCCTTGCACCGG+CGG | + | chr8.3:19925583-19925602 | None:intergenic | 65.0% | |
| ACCGCCGGTGCAAGGCAGAT+CGG | - | chr8.3:19925579-19925598 | MS.gene71929:CDS | 65.0% | |
| CGATGACGAGCTCGTCGGTG+AGG | + | chr8.3:19925428-19925447 | None:intergenic | 65.0% | |
| GCCAGCCACCGAGTACCCAA+TGG | + | chr8.3:19926912-19926931 | None:intergenic | 65.0% | |
| ! | GCCATTGGGTACTCGGTGGC+TGG | - | chr8.3:19926908-19926927 | MS.gene71929:CDS | 65.0% |
| ! | TGGGTACTCGGTGGCTGGCT+TGG | - | chr8.3:19926913-19926932 | MS.gene71929:CDS | 65.0% |
| GCCGGTGCAAGGCAGATCGG+TGG | - | chr8.3:19925582-19925601 | MS.gene71929:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19925393 | 19927159 | 19925393 | ID=MS.gene71929 |
| chr8.3 | mRNA | 19925393 | 19927159 | 19925393 | ID=MS.gene71929.t1;Parent=MS.gene71929 |
| chr8.3 | exon | 19926698 | 19927159 | 19926698 | ID=MS.gene71929.t1.exon1;Parent=MS.gene71929.t1 |
| chr8.3 | CDS | 19926698 | 19927159 | 19926698 | ID=cds.MS.gene71929.t1;Parent=MS.gene71929.t1 |
| chr8.3 | exon | 19925393 | 19925836 | 19925393 | ID=MS.gene71929.t1.exon2;Parent=MS.gene71929.t1 |
| chr8.3 | CDS | 19925393 | 19925836 | 19925393 | ID=cds.MS.gene71929.t1;Parent=MS.gene71929.t1 |
| Gene Sequence |
| Protein sequence |
