AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72187

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72187.t1 MTR_8g096900 96.413 223 8 0 1 223 26 248 6.04e-161 444
MS.gene72187.t1 MTR_5g010635 66.019 206 67 2 20 223 21 225 9.35e-100 290
MS.gene72187.t1 MTR_5g010640 55.128 234 92 3 1 223 5 236 6.44e-90 265
MS.gene72187.t1 MTR_8g096910 49.099 222 65 3 3 223 2 176 4.11e-66 202
MS.gene72187.t1 MTR_8g096920 45.495 222 70 4 3 223 2 173 1.12e-58 183
MS.gene72187.t1 MTR_5g059200 43.644 236 108 8 5 222 11 239 1.88e-52 171
MS.gene72187.t1 MTR_8g075510 41.202 233 118 9 8 223 14 244 9.91e-50 162
MS.gene72187.t1 MTR_8g075510 40.948 232 118 9 8 222 14 243 2.90e-48 160
MS.gene72187.t1 MTR_1g021945 41.964 224 107 7 21 223 24 245 1.13e-47 157
MS.gene72187.t1 MTR_6g079580 39.184 245 122 9 1 223 1 240 1.18e-47 157
MS.gene72187.t1 MTR_2g069660 40.084 237 121 6 8 223 7 243 1.28e-47 157
MS.gene72187.t1 MTR_1g025420 40.329 243 117 9 5 222 6 245 6.59e-47 156
MS.gene72187.t1 MTR_1g025420 40.329 243 117 9 5 222 6 245 1.39e-46 157
MS.gene72187.t1 MTR_8g107140 39.113 248 120 11 2 223 3 245 5.79e-46 153
MS.gene72187.t1 MTR_8g036215 39.407 236 116 10 10 222 6 237 1.50e-45 151
MS.gene72187.t1 MTR_5g022350 40.000 235 121 10 6 223 12 243 5.93e-45 152
MS.gene72187.t1 MTR_3g114030 40.529 227 108 8 22 223 6 230 6.66e-45 150
MS.gene72187.t1 MTR_4g073720 39.669 242 123 10 1 222 1 239 2.31e-44 151
MS.gene72187.t1 MTR_1g062630 40.175 229 113 9 17 223 16 242 4.48e-44 149
MS.gene72187.t1 MTR_4g073730 39.113 248 119 10 4 223 5 248 4.85e-44 149
MS.gene72187.t1 MTR_3g068015 37.200 250 125 11 2 223 3 248 7.41e-44 147
MS.gene72187.t1 MTR_4g073730 39.113 248 119 10 4 223 5 248 1.08e-43 149
MS.gene72187.t1 MTR_8g037890 39.344 244 119 10 3 223 10 247 1.14e-43 149
MS.gene72187.t1 MTR_5g022310 38.800 250 116 11 3 223 10 251 3.08e-43 146
MS.gene72187.t1 MTR_8g056820 39.431 246 123 8 2 223 4 247 3.76e-43 146
MS.gene72187.t1 MTR_7g062610 36.214 243 131 9 3 223 2 242 5.62e-43 145
MS.gene72187.t1 MTR_3g111620 40.000 220 109 8 25 223 29 246 7.39e-43 145
MS.gene72187.t1 MTR_5g022310 38.800 250 116 11 3 223 10 251 7.46e-43 146
MS.gene72187.t1 MTR_8g075550 40.000 230 106 9 22 222 27 253 4.82e-42 144
MS.gene72187.t1 MTR_1g062590 37.449 243 128 8 3 223 2 242 5.08e-42 142
MS.gene72187.t1 MTR_2g067980 43.210 243 105 12 7 223 12 247 4.07e-41 149
MS.gene72187.t1 MTR_7g102380 36.752 234 124 8 12 223 10 241 4.81e-39 135
MS.gene72187.t1 MTR_4g063630 34.025 241 129 9 7 222 16 251 7.36e-39 135
MS.gene72187.t1 MTR_1g062340 36.864 236 124 9 10 223 10 242 1.50e-37 131
MS.gene72187.t1 MTR_1g062350 36.885 244 131 9 1 223 1 242 9.66e-37 129
MS.gene72187.t1 MTR_1g062370 36.885 244 131 9 1 223 1 242 9.98e-37 129
MS.gene72187.t1 MTR_1g062660 36.885 244 131 9 1 223 1 242 2.67e-36 128
MS.gene72187.t1 MTR_2g068030 38.596 228 115 9 18 222 18 243 3.61e-36 128
MS.gene72187.t1 MTR_2g068655 37.333 225 116 9 22 223 30 252 8.63e-36 128
MS.gene72187.t1 MTR_6g009480 35.743 249 131 12 1 223 7 252 2.76e-35 126
MS.gene72187.t1 MTR_2g067990 41.148 209 104 11 22 223 26 222 2.11e-31 121
MS.gene72187.t1 MTR_1g062690 34.156 243 115 9 1 223 1 218 3.64e-29 108
MS.gene72187.t1 MTR_1g062390 30.508 236 145 7 4 223 6 238 4.57e-29 109
MS.gene72187.t1 MTR_2g067970 36.757 185 96 9 57 223 1 182 4.18e-25 103
MS.gene72187.t1 MTR_8g089020 38.462 130 66 4 97 215 31 157 1.14e-22 90.5
MS.gene72187.t1 MTR_5g023850 34.579 214 114 10 8 199 11 220 1.62e-21 89.0
MS.gene72187.t1 MTR_5g022350 39.098 133 70 6 6 129 77 207 2.17e-19 83.6
MS.gene72187.t1 MTR_7g076360 34.359 195 80 7 22 213 7 156 2.82e-18 79.3
MS.gene72187.t1 MTR_2g063150 26.230 244 142 11 1 211 1 239 2.29e-16 75.9
MS.gene72187.t1 MTR_5g068670 40.506 79 46 1 72 149 29 107 3.65e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72187.t1 AT4G11650 63.964 222 75 4 4 223 5 223 8.90e-100 290
MS.gene72187.t1 AT1G75040 44.872 234 108 7 8 223 9 239 2.01e-56 179
MS.gene72187.t1 AT1G75050 41.494 241 119 6 3 223 5 243 4.13e-54 174
MS.gene72187.t1 AT5G24620 41.600 250 116 8 2 223 4 251 3.99e-53 176
MS.gene72187.t1 AT5G24620 41.600 250 116 8 2 223 59 306 8.10e-53 177
MS.gene72187.t1 AT5G24620 41.600 250 116 8 2 223 80 327 1.04e-52 177
MS.gene72187.t1 AT1G77700 41.702 235 114 8 6 222 42 271 3.51e-51 169
MS.gene72187.t1 AT1G77700 39.916 238 122 7 1 222 39 271 5.33e-51 168
MS.gene72187.t1 AT1G77700 42.857 217 103 7 22 222 88 299 2.62e-50 167
MS.gene72187.t1 AT1G75030 40.496 242 120 8 3 223 5 243 2.29e-49 162
MS.gene72187.t1 AT4G38670 39.759 249 122 10 1 223 1 247 6.14e-49 162
MS.gene72187.t1 AT4G38670 39.759 249 122 10 1 223 1 247 6.14e-49 162
MS.gene72187.t1 AT1G19320 40.083 242 117 9 4 222 10 246 2.18e-48 159
MS.gene72187.t1 AT4G38660 41.102 236 116 10 7 223 14 245 2.76e-47 159
MS.gene72187.t1 AT4G38670 41.304 230 107 10 20 223 4 231 6.20e-47 156
MS.gene72187.t1 AT1G75800 38.710 248 114 9 10 223 5 248 8.08e-46 155
MS.gene72187.t1 AT4G38660 42.273 220 104 10 23 223 8 223 8.90e-45 152
MS.gene72187.t1 AT4G36010 41.558 231 100 10 24 223 24 250 1.00e-43 149
MS.gene72187.t1 AT4G36010 41.558 231 100 10 24 223 24 250 1.00e-43 149
MS.gene72187.t1 AT1G20030 39.207 227 109 8 24 223 4 228 3.45e-43 147
MS.gene72187.t1 AT1G20030 38.528 231 113 8 20 223 17 245 5.20e-43 147
MS.gene72187.t1 AT1G73620 40.444 225 106 9 22 223 41 260 6.33e-43 145
MS.gene72187.t1 AT1G18250 38.326 227 116 7 18 223 16 239 1.45e-42 144
MS.gene72187.t1 AT1G18250 38.667 225 114 7 20 223 19 240 3.98e-42 143
MS.gene72187.t1 AT2G17860 38.956 249 121 10 4 223 3 249 5.41e-42 143
MS.gene72187.t1 AT4G24180 36.759 253 116 11 4 223 15 256 1.10e-40 140
MS.gene72187.t1 AT4G24180 36.293 259 119 11 1 223 3 251 1.37e-40 139
MS.gene72187.t1 AT5G38280 35.857 251 129 8 4 223 1 250 2.08e-40 146
MS.gene72187.t1 AT4G24180 36.759 253 116 11 4 223 15 256 2.39e-40 140
MS.gene72187.t1 AT5G38280 35.857 251 129 8 4 223 1 250 2.64e-40 146
MS.gene72187.t1 AT4G24180 36.293 259 119 11 1 223 3 251 5.39e-40 139
MS.gene72187.t1 AT5G02140 35.443 237 129 9 9 223 7 241 3.52e-38 133
MS.gene72187.t1 AT5G02140 35.865 237 128 9 9 223 7 241 4.43e-38 134
MS.gene72187.t1 AT2G28790 33.471 242 137 9 4 222 8 248 8.15e-37 129
MS.gene72187.t1 AT2G28790 33.471 242 137 9 4 222 33 273 1.08e-36 130
MS.gene72187.t1 AT4G24180 36.325 234 104 10 10 207 12 236 5.62e-35 126
MS.gene72187.t1 AT4G24180 35.865 237 109 10 4 207 15 241 6.35e-35 126
MS.gene72187.t1 AT5G40020 32.927 246 138 10 2 223 6 248 2.22e-33 120
MS.gene72187.t1 AT1G70250 32.895 228 125 7 21 223 143 367 2.34e-30 118
MS.gene72187.t1 AT4G36000 43.511 131 64 4 100 223 11 138 6.18e-28 105
MS.gene72187.t1 AT4G36000 43.511 131 64 4 100 223 11 138 6.18e-28 105
MS.gene72187.t1 AT4G18253 32.636 239 130 9 9 223 7 238 7.99e-27 103
MS.gene72187.t1 AT4G18250 34.884 215 119 8 27 223 61 272 1.75e-25 104
MS.gene72187.t1 AT5G24620 40.496 121 53 4 121 223 15 134 9.00e-19 83.2

Find 60 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAACCAATATATGAATT+TGG 0.157413 4.2:+6972596 MS.gene72187:CDS
GAACCACATCGGCCCGTATT+TGG 0.159384 4.2:+6972454 MS.gene72187:CDS
GAGTATTCTGCTAGTGTATT+TGG 0.215037 4.2:-6972573 None:intergenic
GATAATTACTGTTGTAATTC+TGG 0.224646 4.2:+6972789 MS.gene72187:CDS
GCAAAAGACAACCTTGTAAT+TGG 0.235208 4.2:-6972919 None:intergenic
AAAAGTCCAAATTCATATAT+TGG 0.238245 4.2:-6972602 None:intergenic
AGACTTGTCGCATCATCTTT+TGG 0.259319 4.2:-6972876 None:intergenic
GGTTGTAGCTTCGACGGTTC+AGG 0.298469 4.2:+6972486 MS.gene72187:CDS
TTTGATATATCTGTTATTGA+TGG 0.305472 4.2:+6972624 MS.gene72187:CDS
GAATTTAGTCCAACTTCTAA+TGG 0.321769 4.2:+6972663 MS.gene72187:CDS
AGAATTACAACAGTAATTAT+CGG 0.348427 4.2:-6972787 None:intergenic
TTTGGGTAACTATAAGCATC+TGG 0.355236 4.2:-6972858 None:intergenic
AACCACATCGGCCCGTATTT+GGG 0.357300 4.2:+6972455 MS.gene72187:CDS
GCTGCGGCCCATACAGTGTT+AGG 0.372800 4.2:-6972369 None:intergenic
GTCGAAGCTACAACCGGTTC+TGG 0.376293 4.2:-6972478 None:intergenic
AACCGGTTCTGGCCCAAATA+CGG 0.380313 4.2:-6972467 None:intergenic
ACAATTGCCCTAACACTGTA+TGG 0.387614 4.2:+6972361 MS.gene72187:CDS
GCCCGTATTTGGGCCAGAAC+CGG 0.409145 4.2:+6972465 MS.gene72187:CDS
AGGACATTGTCCGATGATAT+CGG 0.422786 4.2:-6972712 None:intergenic
TGATGGATTCAACGTTCCTA+TGG 0.431040 4.2:+6972641 MS.gene72187:CDS
TACCGCCGCAGTCACCGGTT+TGG 0.450783 4.2:-6972521 None:intergenic
GGTTCCTGCAGCTACGTTGA+TGG 0.457014 4.2:-6972436 None:intergenic
ACCGGTTCTGGCCCAAATAC+GGG 0.461130 4.2:-6972466 None:intergenic
CAGCTTACCGCCGCAGTCAC+CGG 0.467832 4.2:-6972526 None:intergenic
GTATGGGCCGCAGCTGTACC+AGG 0.485418 4.2:+6972378 MS.gene72187:CDS
TTTAGTTGCTTACCGCCGCC+TGG 0.498951 4.2:-6972396 None:intergenic
TGTTGTAATTCTGGTAATTG+TGG 0.504317 4.2:+6972798 MS.gene72187:CDS
AGCTTCGACGGTTCAGGGAA+CGG 0.509735 4.2:+6972492 MS.gene72187:CDS
GAATGTTGCTGCCTGTGTAT+AGG 0.512475 4.2:-6972328 None:intergenic
GCCGCAGCTGTACCAGGCGG+CGG 0.526493 4.2:+6972384 MS.gene72187:CDS
AAGCTGAACTGCCAAGCTTA+CGG 0.527083 4.2:+6972543 MS.gene72187:CDS
CGTGTACAGCCATTAGAAGT+TGG 0.531099 4.2:-6972672 None:intergenic
CAAAGGTGGAACCAATTACA+AGG 0.532510 4.2:+6972908 MS.gene72187:CDS
TTGGAGCTGTACCGTAAGCT+TGG 0.532816 4.2:-6972554 None:intergenic
GGGAACGGTCGATGCCAAAC+CGG 0.534308 4.2:+6972507 MS.gene72187:CDS
GTTGTAGCTTCGACGGTTCA+GGG 0.543711 4.2:+6972487 MS.gene72187:CDS
AGATGTACGGCCGATATCAT+CGG 0.544189 4.2:+6972702 MS.gene72187:CDS
GAAGTTGGACTAAATTCCAT+AGG 0.545035 4.2:-6972657 None:intergenic
TGGACCATCAACGTAGCTGC+AGG 0.546070 4.2:+6972432 MS.gene72187:CDS
CTGCGGCCCATACAGTGTTA+GGG 0.547508 4.2:-6972368 None:intergenic
CCTAATGAGCTTAAAACTCA+AGG 0.551744 4.2:+6972732 MS.gene72187:CDS
TGAACCGTCGAAGCTACAAC+CGG 0.559589 4.2:-6972484 None:intergenic
AGTCTATTCACTTGCAAAGG+TGG 0.560419 4.2:+6972894 MS.gene72187:CDS
GAAATATTGAGAATAGTTAG+TGG 0.566094 4.2:-6972823 None:intergenic
TTGGGTAACTATAAGCATCT+GGG 0.584853 4.2:-6972857 None:intergenic
GGCCCAAATACGGGCCGATG+TGG 0.589446 4.2:-6972457 None:intergenic
CAATTGCCCTAACACTGTAT+GGG 0.589746 4.2:+6972362 MS.gene72187:CDS
ACAAGTCTATTCACTTGCAA+AGG 0.595377 4.2:+6972891 MS.gene72187:CDS
ACTTCTAATGGCTGTACACG+TGG 0.600518 4.2:+6972675 MS.gene72187:CDS
AAATATTGAGAATAGTTAGT+GGG 0.606985 4.2:-6972822 None:intergenic
CGATGCCAAACCGGTGACTG+CGG 0.617634 4.2:+6972516 MS.gene72187:CDS
AGAACCGGTTGTAGCTTCGA+CGG 0.620579 4.2:+6972480 MS.gene72187:CDS
TACACGTGGCATAAGATGTA+CGG 0.626336 4.2:+6972689 MS.gene72187:CDS
TCTCTCTTTCACCTATACAC+AGG 0.631862 4.2:+6972317 MS.gene72187:CDS
TGCCAAACCGGTGACTGCGG+CGG 0.639305 4.2:+6972519 MS.gene72187:CDS
ACCGCCGCCTGGTACAGCTG+CGG 0.644365 4.2:-6972385 None:intergenic
CGTAGCTGCAGGAACCACAT+CGG 0.673819 4.2:+6972443 MS.gene72187:CDS
TGGGCCGCAGCTGTACCAGG+CGG 0.694399 4.2:+6972381 MS.gene72187:CDS
GGCGGTAAGCAACTAAACCG+CGG 0.701327 4.2:+6972402 MS.gene72187:CDS
AATGAGCTTAAAACTCAAGG+TGG 0.704721 4.2:+6972735 MS.gene72187:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAACCAATATATGAATT+TGG + chr4.2:6972596-6972615 MS.gene72187:CDS 15.0%
!! AAAAGTCCAAATTCATATAT+TGG - chr4.2:6972605-6972624 None:intergenic 20.0%
!! AAATATTGAGAATAGTTAGT+GGG - chr4.2:6972825-6972844 None:intergenic 20.0%
!! AGAATTACAACAGTAATTAT+CGG - chr4.2:6972790-6972809 None:intergenic 20.0%
!! TTTGATATATCTGTTATTGA+TGG + chr4.2:6972624-6972643 MS.gene72187:CDS 20.0%
!!! GTAATTATCGGTTTTAAAAA+CGG - chr4.2:6972778-6972797 None:intergenic 20.0%
! GAAATATTGAGAATAGTTAG+TGG - chr4.2:6972826-6972845 None:intergenic 25.0%
! GATAATTACTGTTGTAATTC+TGG + chr4.2:6972789-6972808 MS.gene72187:CDS 25.0%
GAATTTAGTCCAACTTCTAA+TGG + chr4.2:6972663-6972682 MS.gene72187:CDS 30.0%
TGTTGTAATTCTGGTAATTG+TGG + chr4.2:6972798-6972817 MS.gene72187:CDS 30.0%
AATGAGCTTAAAACTCAAGG+TGG + chr4.2:6972735-6972754 MS.gene72187:CDS 35.0%
ACAAGTCTATTCACTTGCAA+AGG + chr4.2:6972891-6972910 MS.gene72187:CDS 35.0%
CCTAATGAGCTTAAAACTCA+AGG + chr4.2:6972732-6972751 MS.gene72187:CDS 35.0%
GAAGTTGGACTAAATTCCAT+AGG - chr4.2:6972660-6972679 None:intergenic 35.0%
GAGTATTCTGCTAGTGTATT+TGG - chr4.2:6972576-6972595 None:intergenic 35.0%
GCAAAAGACAACCTTGTAAT+TGG - chr4.2:6972922-6972941 None:intergenic 35.0%
TTGGGTAACTATAAGCATCT+GGG - chr4.2:6972860-6972879 None:intergenic 35.0%
TTTGGGTAACTATAAGCATC+TGG - chr4.2:6972861-6972880 None:intergenic 35.0%
!!! CCTTGAGTTTTAAGCTCATT+AGG - chr4.2:6972735-6972754 None:intergenic 35.0%
ACAATTGCCCTAACACTGTA+TGG + chr4.2:6972361-6972380 MS.gene72187:CDS 40.0%
AGGACATTGTCCGATGATAT+CGG - chr4.2:6972715-6972734 None:intergenic 40.0%
AGTCTATTCACTTGCAAAGG+TGG + chr4.2:6972894-6972913 MS.gene72187:CDS 40.0%
CAAAGGTGGAACCAATTACA+AGG + chr4.2:6972908-6972927 MS.gene72187:CDS 40.0%
CAATTGCCCTAACACTGTAT+GGG + chr4.2:6972362-6972381 MS.gene72187:CDS 40.0%
TACACGTGGCATAAGATGTA+CGG + chr4.2:6972689-6972708 MS.gene72187:CDS 40.0%
TCTCTCTTTCACCTATACAC+AGG + chr4.2:6972317-6972336 MS.gene72187:CDS 40.0%
! AGACTTGTCGCATCATCTTT+TGG - chr4.2:6972879-6972898 None:intergenic 40.0%
! GACTTGTCGCATCATCTTTT+GGG - chr4.2:6972878-6972897 None:intergenic 40.0%
!! TGATGGATTCAACGTTCCTA+TGG + chr4.2:6972641-6972660 MS.gene72187:CDS 40.0%
AACTAAACCGCGGCGAAAAA+TGG + chr4.2:6972412-6972431 MS.gene72187:CDS 45.0%
AAGCTGAACTGCCAAGCTTA+CGG + chr4.2:6972543-6972562 MS.gene72187:CDS 45.0%
ACTTCTAATGGCTGTACACG+TGG + chr4.2:6972675-6972694 MS.gene72187:CDS 45.0%
AGATGTACGGCCGATATCAT+CGG + chr4.2:6972702-6972721 MS.gene72187:CDS 45.0%
CGTGTACAGCCATTAGAAGT+TGG - chr4.2:6972675-6972694 None:intergenic 45.0%
GAATGTTGCTGCCTGTGTAT+AGG - chr4.2:6972331-6972350 None:intergenic 45.0%
AACCACATCGGCCCGTATTT+GGG + chr4.2:6972455-6972474 MS.gene72187:CDS 50.0%
AGAACCGGTTGTAGCTTCGA+CGG + chr4.2:6972480-6972499 MS.gene72187:CDS 50.0%
GTTGTAGCTTCGACGGTTCA+GGG + chr4.2:6972487-6972506 MS.gene72187:CDS 50.0%
TGAACCGTCGAAGCTACAAC+CGG - chr4.2:6972487-6972506 None:intergenic 50.0%
TTGGAGCTGTACCGTAAGCT+TGG - chr4.2:6972557-6972576 None:intergenic 50.0%
! AACCGGTTCTGGCCCAAATA+CGG - chr4.2:6972470-6972489 None:intergenic 50.0%
!! TGATGGTCCATTTTTCGCCG+CGG - chr4.2:6972422-6972441 None:intergenic 50.0%
AGCTTCGACGGTTCAGGGAA+CGG + chr4.2:6972492-6972511 MS.gene72187:CDS 55.0%
CGTAGCTGCAGGAACCACAT+CGG + chr4.2:6972443-6972462 MS.gene72187:CDS 55.0%
CTGCGGCCCATACAGTGTTA+GGG - chr4.2:6972371-6972390 None:intergenic 55.0%
GAACCACATCGGCCCGTATT+TGG + chr4.2:6972454-6972473 MS.gene72187:CDS 55.0%
GGCGGTAAGCAACTAAACCG+CGG + chr4.2:6972402-6972421 MS.gene72187:CDS 55.0%
GGTTCCTGCAGCTACGTTGA+TGG - chr4.2:6972439-6972458 None:intergenic 55.0%
GGTTGTAGCTTCGACGGTTC+AGG + chr4.2:6972486-6972505 MS.gene72187:CDS 55.0%
TGGACCATCAACGTAGCTGC+AGG + chr4.2:6972432-6972451 MS.gene72187:CDS 55.0%
TTTAGTTGCTTACCGCCGCC+TGG - chr4.2:6972399-6972418 None:intergenic 55.0%
! ACCGGTTCTGGCCCAAATAC+GGG - chr4.2:6972469-6972488 None:intergenic 55.0%
! GTCGAAGCTACAACCGGTTC+TGG - chr4.2:6972481-6972500 None:intergenic 55.0%
CGATGCCAAACCGGTGACTG+CGG + chr4.2:6972516-6972535 MS.gene72187:CDS 60.0%
GCCCGTATTTGGGCCAGAAC+CGG + chr4.2:6972465-6972484 MS.gene72187:CDS 60.0%
GCTGCGGCCCATACAGTGTT+AGG - chr4.2:6972372-6972391 None:intergenic 60.0%
GGGAACGGTCGATGCCAAAC+CGG + chr4.2:6972507-6972526 MS.gene72187:CDS 60.0%
CAGCTTACCGCCGCAGTCAC+CGG - chr4.2:6972529-6972548 None:intergenic 65.0%
GGCCCAAATACGGGCCGATG+TGG - chr4.2:6972460-6972479 None:intergenic 65.0%
GTATGGGCCGCAGCTGTACC+AGG + chr4.2:6972378-6972397 MS.gene72187:CDS 65.0%
TGCCAAACCGGTGACTGCGG+CGG + chr4.2:6972519-6972538 MS.gene72187:CDS 65.0%
! TACCGCCGCAGTCACCGGTT+TGG - chr4.2:6972524-6972543 None:intergenic 65.0%
ACCGCCGCCTGGTACAGCTG+CGG - chr4.2:6972388-6972407 None:intergenic 70.0%
TGGGCCGCAGCTGTACCAGG+CGG + chr4.2:6972381-6972400 MS.gene72187:CDS 70.0%
GCCGCAGCTGTACCAGGCGG+CGG + chr4.2:6972384-6972403 MS.gene72187:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 6972276 6972947 6972276 ID=MS.gene72187
chr4.2 mRNA 6972276 6972947 6972276 ID=MS.gene72187.t1;Parent=MS.gene72187
chr4.2 exon 6972276 6972947 6972276 ID=MS.gene72187.t1.exon1;Parent=MS.gene72187.t1
chr4.2 CDS 6972276 6972947 6972276 ID=cds.MS.gene72187.t1;Parent=MS.gene72187.t1
Gene Sequence

>MS.gene72187

ATGAGTTCTCTCATAAAAACATTTCTATTTTCTCTCATTACTCTCTCTTTCACCTATACACAGGCAGCAACATTCGACATCACAAACAATTGCCCTAACACTGTATGGGCCGCAGCTGTACCAGGCGGCGGTAAGCAACTAAACCGCGGCGAAAAATGGACCATCAACGTAGCTGCAGGAACCACATCGGCCCGTATTTGGGCCAGAACCGGTTGTAGCTTCGACGGTTCAGGGAACGGTCGATGCCAAACCGGTGACTGCGGCGGTAAGCTGAACTGCCAAGCTTACGGTACAGCTCCAAATACACTAGCAGAATACTCTTTAAACCAATATATGAATTTGGACTTTTTTGATATATCTGTTATTGATGGATTCAACGTTCCTATGGAATTTAGTCCAACTTCTAATGGCTGTACACGTGGCATAAGATGTACGGCCGATATCATCGGACAATGTCCTAATGAGCTTAAAACTCAAGGTGGTTGTAACAACGCATGTACCGTTTTTAAAACCGATAATTACTGTTGTAATTCTGGTAATTGTGGACCCACTAACTATTCTCAATATTTCAAGAATAAGTGCCCAGATGCTTATAGTTACCCAAAAGATGATGCGACAAGTCTATTCACTTGCAAAGGTGGAACCAATTACAAGGTTGTCTTTTGCCCATGA
Protein sequence

>MS.gene72187.t1

MSSLIKTFLFSLITLSFTYTQAATFDITNNCPNTVWAAAVPGGGKQLNRGEKWTINVAAGTTSARIWARTGCSFDGSGNGRCQTGDCGGKLNCQAYGTAPNTLAEYSLNQYMNLDFFDISVIDGFNVPMEFSPTSNGCTRGIRCTADIIGQCPNELKTQGGCNNACTVFKTDNYCCNSGNCGPTNYSQYFKNKCPDAYSYPKDDATSLFTCKGGTNYKVVFCP