Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72308.t1 | XP_013468035.1 | 91.7 | 229 | 12 | 5 | 1 | 227 | 1 | 224 | 3.30E-104 | 387.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72308.t1 | O34614 | 40.1 | 152 | 82 | 3 | 78 | 227 | 4 | 148 | 9.5e-20 | 98.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72308.t1 | A0A072VJS6 | 91.7 | 229 | 12 | 5 | 1 | 227 | 1 | 224 | 2.4e-104 | 387.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene72308 | 0.802062 | 6.70E-49 | -1.69E-46 |
MS.gene050226 | MS.gene72308 | 0.802396 | 5.72E-49 | -1.69E-46 |
MS.gene050227 | MS.gene72308 | 0.805752 | 1.15E-49 | -1.69E-46 |
MS.gene050228 | MS.gene72308 | 0.811115 | 8.23E-51 | -1.69E-46 |
MS.gene058906 | MS.gene72308 | 0.802635 | 5.11E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72308.t1 | MTR_1g060720 | 87.719 | 228 | 23 | 3 | 1 | 227 | 1 | 224 | 1.84e-129 | 366 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72308.t1 | AT1G16445 | 66.102 | 177 | 57 | 2 | 53 | 227 | 57 | 232 | 6.35e-79 | 238 |
Find 45 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGACTGTATCTCCTTTC+TGG | 0.196980 | 1.4:+49774964 | None:intergenic |
CACCTTAGCATTGCGCAATT+TGG | 0.227250 | 1.4:-49774916 | MS.gene72308:CDS |
CTTCCTCTTTGGAAAGAAAA+AGG | 0.243053 | 1.4:-49777047 | MS.gene72308:CDS |
AGAGAAGCAACATTGATTTC+TGG | 0.299262 | 1.4:+49777252 | None:intergenic |
CAATATTTGCCATAGTAAAA+TGG | 0.299706 | 1.4:-49774321 | MS.gene72308:CDS |
AGGCTTGTTGCCTTCAACTT+AGG | 0.315106 | 1.4:-49772938 | MS.gene72308:CDS |
ACCTGAAAAGGGAGAATCTT+TGG | 0.326774 | 1.4:+49777180 | None:intergenic |
AGATAAGACTTCATTGTTGC+TGG | 0.368296 | 1.4:-49774835 | MS.gene72308:CDS |
AAGATCAGAAACAACATTAC+TGG | 0.374699 | 1.4:-49772882 | MS.gene72308:CDS |
TTCAACTTAGGTTATCTTCC+GGG | 0.393992 | 1.4:-49772926 | MS.gene72308:CDS |
ATGTAAATGGGTACCTGAAA+AGG | 0.416447 | 1.4:+49777168 | None:intergenic |
CTTCAACTTAGGTTATCTTC+CGG | 0.423144 | 1.4:-49772927 | MS.gene72308:CDS |
CTCAGCAGTCCTCACCTCAT+TGG | 0.429506 | 1.4:+49774797 | None:intergenic |
CTGGAGATGTTGGTTGGAGA+AGG | 0.436964 | 1.4:+49777271 | None:intergenic |
TGGAGAAAGAAGAAGATTGA+AGG | 0.442468 | 1.4:+49777200 | None:intergenic |
GTTGCTGATGAGTCACATAA+TGG | 0.443329 | 1.4:-49774894 | MS.gene72308:CDS |
TGTTGGTTGGAGAAGGAAGA+AGG | 0.450022 | 1.4:+49777278 | None:intergenic |
TTAGCATAGTGGTTTATGTC+GGG | 0.463191 | 1.4:-49772817 | MS.gene72308:CDS |
AAGAAATATTACCGTCCACC+AGG | 0.491363 | 1.4:+49772791 | None:intergenic |
CGGAAGATAACCTAAGTTGA+AGG | 0.503757 | 1.4:+49772928 | None:intergenic |
TTGGAGAAGGAAGAAGGAAG+AGG | 0.510509 | 1.4:+49777284 | None:intergenic |
AACCAAATTGCGCAATGCTA+AGG | 0.516356 | 1.4:+49774914 | None:intergenic |
TGATTTCTGGAGATGTTGGT+TGG | 0.525157 | 1.4:+49777265 | None:intergenic |
ATTATTTCTTTGTCACCTCC+CGG | 0.527941 | 1.4:+49772908 | None:intergenic |
AGGAGGGCTTATTAGCATAG+TGG | 0.534041 | 1.4:-49772828 | MS.gene72308:CDS |
TGGAAACATGTTGTCCAGAA+AGG | 0.540821 | 1.4:-49774978 | MS.gene72308:CDS |
TGTAAATGGGTACCTGAAAA+GGG | 0.548833 | 1.4:+49777169 | None:intergenic |
TAATGGTTGTGTATACGCAT+TGG | 0.548925 | 1.4:-49774877 | MS.gene72308:CDS |
TTCAAAGCAATGCCTACGTT+AGG | 0.555593 | 1.4:-49774289 | MS.gene72308:intron |
ACATTGATTTCTGGAGATGT+TGG | 0.556359 | 1.4:+49777261 | None:intergenic |
ATTAGCATAGTGGTTTATGT+CGG | 0.565881 | 1.4:-49772818 | MS.gene72308:CDS |
ACTATGCTAATAAGCCCTCC+TGG | 0.566809 | 1.4:+49772830 | None:intergenic |
GTTTATGTCGGGCACCCTGG+TGG | 0.569259 | 1.4:-49772806 | MS.gene72308:CDS |
ATTGATGCGACATGTGGCAA+CGG | 0.582874 | 1.4:-49774945 | MS.gene72308:CDS |
ATGTCGGGCACCCTGGTGGA+CGG | 0.586367 | 1.4:-49772802 | MS.gene72308:CDS |
GTGGTTTATGTCGGGCACCC+TGG | 0.587189 | 1.4:-49772809 | MS.gene72308:CDS |
GCAAAGAGAATTCTAATACC+AGG | 0.619973 | 1.4:-49772848 | MS.gene72308:CDS |
ACAGTCATTGATGCGACATG+TGG | 0.653812 | 1.4:-49774951 | MS.gene72308:CDS |
AGAAATATTACCGTCCACCA+GGG | 0.662031 | 1.4:+49772792 | None:intergenic |
AGAGAATTCTAATACCAGGA+GGG | 0.674542 | 1.4:-49772844 | MS.gene72308:CDS |
AACTTAGGTTATCTTCCGGG+AGG | 0.678013 | 1.4:-49772923 | MS.gene72308:CDS |
TATTTGCCATAGTAAAATGG+AGG | 0.679977 | 1.4:-49774318 | MS.gene72308:CDS |
GAAAAGTGAGTACCTAACGT+AGG | 0.694613 | 1.4:+49774277 | None:intergenic |
AAGAGAATTCTAATACCAGG+AGG | 0.699018 | 1.4:-49772845 | MS.gene72308:CDS |
AGCATCGCTTAGTTCCAATG+AGG | 0.713727 | 1.4:-49774811 | MS.gene72308:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTTTTTTTTTTTTAACTTA+TGG | - | chr1.4:49773877-49773896 | MS.gene72308:intron | 10.0% |
!!! | GTTATTATTATTTTGTTTAA+TGG | + | chr1.4:49772929-49772948 | None:intergenic | 10.0% |
!!! | TTATTTTCTTTATGTATTAT+TGG | - | chr1.4:49776661-49776680 | MS.gene72308:intron | 10.0% |
!! | AATTAATTATATAATAGCTC+AGG | + | chr1.4:49776592-49776611 | None:intergenic | 15.0% |
!! | ATGAATAAAATGAAAGTAAA+AGG | - | chr1.4:49776476-49776495 | MS.gene72308:intron | 15.0% |
!! | TTTAGTAAAATTTAAGAGTT+TGG | + | chr1.4:49776288-49776307 | None:intergenic | 15.0% |
!!! | GTTTTTATCAATAACTAATA+TGG | - | chr1.4:49776322-49776341 | MS.gene72308:intron | 15.0% |
!!! | TAAAGAAAATAATTTTACCA+TGG | + | chr1.4:49776653-49776672 | None:intergenic | 15.0% |
!! | ATAGCTCACTATATTTATTT+AGG | + | chr1.4:49776852-49776871 | None:intergenic | 20.0% |
!! | ATATGATATGATATGAATAG+TGG | - | chr1.4:49773773-49773792 | MS.gene72308:intron | 20.0% |
!! | CAAATTCTAATATGGTATTA+GGG | - | chr1.4:49773677-49773696 | MS.gene72308:intron | 20.0% |
!! | CTGAAAATATCAATATACAA+CGG | + | chr1.4:49775591-49775610 | None:intergenic | 20.0% |
!! | GACTTCTTAAAAAATTAAAC+TGG | + | chr1.4:49774865-49774884 | None:intergenic | 20.0% |
!! | TAATTATATAGATTTGCATG+AGG | - | chr1.4:49773603-49773622 | MS.gene72308:intron | 20.0% |
!! | TTTAAACAGCAAATGTTATT+AGG | + | chr1.4:49774805-49774824 | None:intergenic | 20.0% |
!!! | AAAATTGATTTTGACATGTT+TGG | + | chr1.4:49773268-49773287 | None:intergenic | 20.0% |
!!! | ATTTTCTATTTTCAAGTTTG+TGG | + | chr1.4:49775513-49775532 | None:intergenic | 20.0% |
!!! | ATTTTTTTAGGGTTGTAATT+AGG | - | chr1.4:49773379-49773398 | MS.gene72308:intron | 20.0% |
!!! | CTTAAATTTTACTAAAACCT+TGG | - | chr1.4:49776292-49776311 | MS.gene72308:intron | 20.0% |
!!! | GTATAACCTTATTAGAATTT+TGG | + | chr1.4:49773859-49773878 | None:intergenic | 20.0% |
!!! | TTGTATGTTTACTTTTTATG+TGG | - | chr1.4:49774300-49774319 | MS.gene72308:CDS | 20.0% |
!!! | TTTACATTAAACTCACTTTT+AGG | + | chr1.4:49773207-49773226 | None:intergenic | 20.0% |
!!! | TTTATTCATCTTTTCTTCAA+TGG | + | chr1.4:49776415-49776434 | None:intergenic | 20.0% |
!!! | TTTTTAACTTATGGAATGTT+TGG | - | chr1.4:49773886-49773905 | MS.gene72308:intron | 20.0% |
!!! | TTTTTTTAGGGTTGTAATTA+GGG | - | chr1.4:49773380-49773399 | MS.gene72308:intron | 20.0% |
! | AAATGGAACAAATCAAATGT+TGG | + | chr1.4:49776177-49776196 | None:intergenic | 25.0% |
! | AACACTATAAGGATGTAAAT+GGG | + | chr1.4:49772995-49773014 | None:intergenic | 25.0% |
! | AAGCATTTCTTGAAACTTTA+AGG | - | chr1.4:49777146-49777165 | MS.gene72308:intron | 25.0% |
! | AATATGTGTAAATAGTCACA+TGG | - | chr1.4:49776089-49776108 | MS.gene72308:intron | 25.0% |
! | AATCCTGAAAACATGAAAAA+GGG | + | chr1.4:49773060-49773079 | None:intergenic | 25.0% |
! | AGAATATTAAAATGCTGTCT+TGG | - | chr1.4:49774341-49774360 | MS.gene72308:CDS | 25.0% |
! | AGGGCCTATTATAAATTATT+GGG | - | chr1.4:49773696-49773715 | MS.gene72308:intron | 25.0% |
! | ATCCAACCAAAATTCTAATA+AGG | - | chr1.4:49773850-49773869 | MS.gene72308:intron | 25.0% |
! | ATGGCCCAATAATTTATAAT+AGG | + | chr1.4:49773703-49773722 | None:intergenic | 25.0% |
! | CAATATTTGCCATAGTAAAA+TGG | - | chr1.4:49775827-49775846 | MS.gene72308:intron | 25.0% |
! | CACATAATTCTTGTAATCAA+GGG | + | chr1.4:49777116-49777135 | None:intergenic | 25.0% |
! | CCAAATTCTAATATGGTATT+AGG | - | chr1.4:49773676-49773695 | MS.gene72308:intron | 25.0% |
! | CCTAATACCATATTAGAATT+TGG | + | chr1.4:49773679-49773698 | None:intergenic | 25.0% |
! | CTGAAATCCAAATTCTAATA+TGG | - | chr1.4:49773669-49773688 | MS.gene72308:intron | 25.0% |
! | TAATCCTGAAAACATGAAAA+AGG | + | chr1.4:49773061-49773080 | None:intergenic | 25.0% |
! | TAGGGCCTATTATAAATTAT+TGG | - | chr1.4:49773695-49773714 | MS.gene72308:intron | 25.0% |
! | TCACATAATTCTTGTAATCA+AGG | + | chr1.4:49777117-49777136 | None:intergenic | 25.0% |
! | TTAAAACCCTCATTTGAATA+AGG | - | chr1.4:49774074-49774093 | MS.gene72308:intron | 25.0% |
! | TTAACAGAATGAGCATTAAA+AGG | + | chr1.4:49775758-49775777 | None:intergenic | 25.0% |
! | TTAGTCATAGAATTGATAGA+AGG | - | chr1.4:49773635-49773654 | MS.gene72308:intron | 25.0% |
! | TTATATAATAGCTCAGGTTA+TGG | + | chr1.4:49776586-49776605 | None:intergenic | 25.0% |
! | TTTCAATTGCTGTAGAATAT+GGG | - | chr1.4:49775390-49775409 | MS.gene72308:intron | 25.0% |
!! | AAATCAATTTTACACCTACT+TGG | - | chr1.4:49773277-49773296 | MS.gene72308:intron | 25.0% |
!! | ATACAATGATTTTCATTCAC+TGG | - | chr1.4:49776442-49776461 | MS.gene72308:intron | 25.0% |
!! | GTTTTTGAACTAGGATTTTT+AGG | - | chr1.4:49774676-49774695 | MS.gene72308:intron | 25.0% |
!! | TTTTATGAGAAAATACCTGA+TGG | + | chr1.4:49776356-49776375 | None:intergenic | 25.0% |
!!! | AACATTTGATTTGTTCCATT+TGG | - | chr1.4:49776176-49776195 | MS.gene72308:intron | 25.0% |
!!! | AACCTTATTAGAATTTTGGT+TGG | + | chr1.4:49773855-49773874 | None:intergenic | 25.0% |
!!! | TAAACTAAGCCTATGTTTTT+TGG | + | chr1.4:49773305-49773324 | None:intergenic | 25.0% |
!!! | TTTTTTAGGGTTGTAATTAG+GGG | - | chr1.4:49773381-49773400 | MS.gene72308:intron | 25.0% |
AAAAAACCAAGATACCACTT+TGG | + | chr1.4:49774427-49774446 | None:intergenic | 30.0% | |
AAATTTAAGAGTTTGGTCCA+TGG | + | chr1.4:49776281-49776300 | None:intergenic | 30.0% | |
AAGATCAGAAACAACATTAC+TGG | - | chr1.4:49777266-49777285 | MS.gene72308:CDS | 30.0% | |
AATATGCTGCATATACATGT+AGG | - | chr1.4:49777190-49777209 | MS.gene72308:CDS | 30.0% | |
AGAAGAACATGAATAAAGAG+TGG | + | chr1.4:49776924-49776943 | None:intergenic | 30.0% | |
AGAATTTGCCAAAAACGATT+AGG | + | chr1.4:49774887-49774906 | None:intergenic | 30.0% | |
AGCAAAACCTTATTCAAATG+AGG | + | chr1.4:49774084-49774103 | None:intergenic | 30.0% | |
ATGAATAGTGGCTATATGAA+AGG | - | chr1.4:49773785-49773804 | MS.gene72308:intron | 30.0% | |
ATGATGCAAACAACACTATA+AGG | + | chr1.4:49773006-49773025 | None:intergenic | 30.0% | |
ATTAGCATAGTGGTTTATGT+CGG | - | chr1.4:49777330-49777349 | MS.gene72308:CDS | 30.0% | |
CAACACTATAAGGATGTAAA+TGG | + | chr1.4:49772996-49773015 | None:intergenic | 30.0% | |
CTCTTTGCTTTATCTTTAGA+GGG | - | chr1.4:49774905-49774924 | MS.gene72308:CDS | 30.0% | |
CTTTCAATTGCTGTAGAATA+TGG | - | chr1.4:49775389-49775408 | MS.gene72308:intron | 30.0% | |
GAAACTTGGTAGAAGAAATT+AGG | + | chr1.4:49776894-49776913 | None:intergenic | 30.0% | |
GCAAAACCTTATTCAAATGA+GGG | + | chr1.4:49774083-49774102 | None:intergenic | 30.0% | |
GTATTATTACTACTACGAAC+CGG | + | chr1.4:49776830-49776849 | None:intergenic | 30.0% | |
TACTTGGAACCAAAAAACAT+AGG | - | chr1.4:49773293-49773312 | MS.gene72308:intron | 30.0% | |
TACTTTACTTGATGCATCTT+AGG | - | chr1.4:49773150-49773169 | MS.gene72308:intron | 30.0% | |
TATTTGCCATAGTAAAATGG+AGG | - | chr1.4:49775830-49775849 | MS.gene72308:intron | 30.0% | |
TCAGTTTGATCATTTATAGC+AGG | + | chr1.4:49775672-49775691 | None:intergenic | 30.0% | |
TCTCTTTGCTTTATCTTTAG+AGG | - | chr1.4:49774904-49774923 | MS.gene72308:CDS | 30.0% | |
TGAATAGTGGCTATATGAAA+GGG | - | chr1.4:49773786-49773805 | MS.gene72308:intron | 30.0% | |
TGATAAAAACTGTATAGCCA+AGG | + | chr1.4:49776312-49776331 | None:intergenic | 30.0% | |
TTTGATCATTTATAGCAGGA+CGG | + | chr1.4:49775668-49775687 | None:intergenic | 30.0% | |
! | AGGGTGAAAATTTTCATTTC+AGG | + | chr1.4:49774041-49774060 | None:intergenic | 30.0% |
! | ATTTGTTGCAGAAGTCTATT+GGG | - | chr1.4:49775004-49775023 | MS.gene72308:intron | 30.0% |
! | TAAGAAGTCCTAATCGTTTT+TGG | - | chr1.4:49774876-49774895 | MS.gene72308:CDS | 30.0% |
!! | AATGTTTGGATGAAGTGTTT+TGG | - | chr1.4:49773900-49773919 | MS.gene72308:intron | 30.0% |
!! | ATACCCTTTTTCATGTTTTC+AGG | - | chr1.4:49773054-49773073 | MS.gene72308:intron | 30.0% |
!! | ATGTTTGGATGAAGTGTTTT+GGG | - | chr1.4:49773901-49773920 | MS.gene72308:intron | 30.0% |
!! | CAGTATTGAATTCTAGAACT+AGG | - | chr1.4:49775726-49775745 | MS.gene72308:intron | 30.0% |
!! | TCATTGATTCTATAGTAGCT+TGG | - | chr1.4:49774954-49774973 | MS.gene72308:CDS | 30.0% |
!! | TTGATTTTGACATGTTTGGT+TGG | + | chr1.4:49773264-49773283 | None:intergenic | 30.0% |
!! | TTTCATGTTTTCAGGATTAG+AGG | - | chr1.4:49773062-49773081 | MS.gene72308:intron | 30.0% |
!! | TTTGAACTAGGATTTTTAGG+AGG | - | chr1.4:49774679-49774698 | MS.gene72308:intron | 30.0% |
!!! | AAATGAGGGTTTTAAAGAGA+AGG | + | chr1.4:49774069-49774088 | None:intergenic | 30.0% |
!!! | GTTTACTTTTTATGTGGATG+TGG | - | chr1.4:49774306-49774325 | MS.gene72308:CDS | 30.0% |
!!! | TATGTTTTTTGGTTCCAAGT+AGG | + | chr1.4:49773294-49773313 | None:intergenic | 30.0% |
!!! | TATTGTTTTTGTTCCTACCA+GGG | - | chr1.4:49775145-49775164 | MS.gene72308:intron | 30.0% |
!!! | TTATTGTTTTTGTTCCTACC+AGG | - | chr1.4:49775144-49775163 | MS.gene72308:intron | 30.0% |
!!! | TTTTTTATCGAGTGGTGTTA+AGG | - | chr1.4:49774702-49774721 | MS.gene72308:intron | 30.0% |
AAATGAATCACCATGAGTTG+AGG | + | chr1.4:49776955-49776974 | None:intergenic | 35.0% | |
AAGAGAATTCTAATACCAGG+AGG | - | chr1.4:49777303-49777322 | MS.gene72308:CDS | 35.0% | |
ACAGCAAATGTTATTAGGCT+AGG | + | chr1.4:49774800-49774819 | None:intergenic | 35.0% | |
AGAGAATTCTAATACCAGGA+GGG | - | chr1.4:49777304-49777323 | MS.gene72308:CDS | 35.0% | |
AGATAAGACTTCATTGTTGC+TGG | - | chr1.4:49775313-49775332 | MS.gene72308:intron | 35.0% | |
AGCAAGGACATTACATTTCA+TGG | - | chr1.4:49773998-49774017 | MS.gene72308:intron | 35.0% | |
AGGTGTATAAGTGGGAAATT+CGG | - | chr1.4:49774169-49774188 | MS.gene72308:intron | 35.0% | |
ATAGACTTCTGCAACAAATG+TGG | + | chr1.4:49775003-49775022 | None:intergenic | 35.0% | |
ATGTAAATGGGTACCTGAAA+AGG | + | chr1.4:49772983-49773002 | None:intergenic | 35.0% | |
CGCCATTTGTAAAACAAACA+CGG | + | chr1.4:49774397-49774416 | None:intergenic | 35.0% | |
CTTCAACTTAGGTTATCTTC+CGG | - | chr1.4:49777221-49777240 | MS.gene72308:CDS | 35.0% | |
GCAAAGAGAATTCTAATACC+AGG | - | chr1.4:49777300-49777319 | MS.gene72308:CDS | 35.0% | |
GTGAAACAAAGTTGGAATTG+AGG | + | chr1.4:49776042-49776061 | None:intergenic | 35.0% | |
TAATGGTTGTGTATACGCAT+TGG | - | chr1.4:49775271-49775290 | MS.gene72308:intron | 35.0% | |
TATGAAACTGCATAAGAGCA+AGG | - | chr1.4:49773982-49774001 | MS.gene72308:intron | 35.0% | |
TCCTAGTTCAAAAACAGAAC+AGG | + | chr1.4:49774671-49774690 | None:intergenic | 35.0% | |
TGGAGAAAGAAGAAGATTGA+AGG | + | chr1.4:49772951-49772970 | None:intergenic | 35.0% | |
TGTAAATGGGTACCTGAAAA+GGG | + | chr1.4:49772982-49773001 | None:intergenic | 35.0% | |
TTAAAATGCTGTCTTGGAAG+TGG | - | chr1.4:49774347-49774366 | MS.gene72308:intron | 35.0% | |
TTAGCATAGTGGTTTATGTC+GGG | - | chr1.4:49777331-49777350 | MS.gene72308:CDS | 35.0% | |
TTCAACTTAGGTTATCTTCC+GGG | - | chr1.4:49777222-49777241 | MS.gene72308:CDS | 35.0% | |
TTCCCACTTATACACCTTAA+GGG | + | chr1.4:49774166-49774185 | None:intergenic | 35.0% | |
TTTCCCACTTATACACCTTA+AGG | + | chr1.4:49774167-49774186 | None:intergenic | 35.0% | |
! | AGGTGTTGTGTCTGTTATTT+CGG | - | chr1.4:49774722-49774741 | MS.gene72308:intron | 35.0% |
! | ATTATTTCTTTGTCACCTCC+CGG | + | chr1.4:49777243-49777262 | None:intergenic | 35.0% |
! | CAACTTCCTCCATTTTACTA+TGG | + | chr1.4:49775839-49775858 | None:intergenic | 35.0% |
! | CATTTGTTGCAGAAGTCTAT+TGG | - | chr1.4:49775003-49775022 | MS.gene72308:intron | 35.0% |
! | CTTCCTCTTTGGAAAGAAAA+AGG | - | chr1.4:49773101-49773120 | MS.gene72308:intron | 35.0% |
! | TTGCCTTTTTCTTTCCAAAG+AGG | + | chr1.4:49773107-49773126 | None:intergenic | 35.0% |
!! | ACATTGATTTCTGGAGATGT+TGG | + | chr1.4:49772890-49772909 | None:intergenic | 35.0% |
!! | AGAGAAGCAACATTGATTTC+TGG | + | chr1.4:49772899-49772918 | None:intergenic | 35.0% |
!! | TACTTTTTATGTGGATGTGG+AGG | - | chr1.4:49774309-49774328 | MS.gene72308:CDS | 35.0% |
!! | TGTTTGGATGAAGTGTTTTG+GGG | - | chr1.4:49773902-49773921 | MS.gene72308:intron | 35.0% |
!! | TTTTAAAGAGAAGGAGAGGA+GGG | + | chr1.4:49774060-49774079 | None:intergenic | 35.0% |
!!! | AGCCGTGTTTGTTTTACAAA+TGG | - | chr1.4:49774392-49774411 | MS.gene72308:intron | 35.0% |
!!! | AGTTTTCATGCTGGTTCAAT+TGG | - | chr1.4:49774627-49774646 | MS.gene72308:intron | 35.0% |
!!! | CCTTTTTTTCAACCAATCAG+CGG | - | chr1.4:49776997-49777016 | MS.gene72308:intron | 35.0% |
!!! | GTTTGTTTTACAAATGGCGA+TGG | - | chr1.4:49774398-49774417 | MS.gene72308:intron | 35.0% |
!!! | TCCTGTTCTGTTTTTGAACT+AGG | - | chr1.4:49774667-49774686 | MS.gene72308:intron | 35.0% |
!!! | TTAGGAGGTTTTTTATCGAG+TGG | - | chr1.4:49774694-49774713 | MS.gene72308:intron | 35.0% |
!!! | TTTTTTGTCAAGTAGCCTAG+TGG | - | chr1.4:49774129-49774148 | MS.gene72308:intron | 35.0% |
AACCAAATTGCGCAATGCTA+AGG | + | chr1.4:49775237-49775256 | None:intergenic | 40.0% | |
AACCGCGAATTATGTGACTA+TGG | + | chr1.4:49776719-49776738 | None:intergenic | 40.0% | |
AATAGCTAGCTCAAGTGATG+AGG | + | chr1.4:49773817-49773836 | None:intergenic | 40.0% | |
ACATTCTATATGCAAGCGCT+GGG | + | chr1.4:49774203-49774222 | None:intergenic | 40.0% | |
ACCTGAAAAGGGAGAATCTT+TGG | + | chr1.4:49772971-49772990 | None:intergenic | 40.0% | |
AGATGTTGAGAGTCTCTGAT+GGG | - | chr1.4:49773744-49773763 | MS.gene72308:intron | 40.0% | |
AGCCATAGTCACATAATTCG+CGG | - | chr1.4:49776714-49776733 | MS.gene72308:intron | 40.0% | |
ATCAAGGGAGAATTGCGAAT+TGG | + | chr1.4:49777101-49777120 | None:intergenic | 40.0% | |
ATCACTTGAGCTAGCTATTG+GGG | - | chr1.4:49773818-49773837 | MS.gene72308:intron | 40.0% | |
ATGAATTTGAGAAGCCTCCA+TGG | - | chr1.4:49776261-49776280 | MS.gene72308:intron | 40.0% | |
CAATGACTGTATCTCCTTTC+TGG | + | chr1.4:49775187-49775206 | None:intergenic | 40.0% | |
CATCACTTGAGCTAGCTATT+GGG | - | chr1.4:49773817-49773836 | MS.gene72308:intron | 40.0% | |
GAAAAGTGAGTACCTAACGT+AGG | + | chr1.4:49775874-49775893 | None:intergenic | 40.0% | |
GACCCTTAAGGTGTATAAGT+GGG | - | chr1.4:49774161-49774180 | MS.gene72308:intron | 40.0% | |
GCATGCAAGTGAAACAAAGT+TGG | + | chr1.4:49776050-49776069 | None:intergenic | 40.0% | |
GGTGTATAAGTGGGAAATTC+GGG | - | chr1.4:49774170-49774189 | MS.gene72308:intron | 40.0% | |
GTCTGAAGGTCTATATGTGA+TGG | - | chr1.4:49774451-49774470 | MS.gene72308:intron | 40.0% | |
GTGAAGAAACCAAAACAGCA+GGG | + | chr1.4:49774480-49774499 | None:intergenic | 40.0% | |
GTTGCTGATGAGTCACATAA+TGG | - | chr1.4:49775254-49775273 | MS.gene72308:intron | 40.0% | |
TCAATATACAACGGCTTGTC+CGG | + | chr1.4:49775582-49775601 | None:intergenic | 40.0% | |
TCATCACTTGAGCTAGCTAT+TGG | - | chr1.4:49773816-49773835 | MS.gene72308:intron | 40.0% | |
TGACCCTTAAGGTGTATAAG+TGG | - | chr1.4:49774160-49774179 | MS.gene72308:intron | 40.0% | |
TGGAAACATGTTGTCCAGAA+AGG | - | chr1.4:49775170-49775189 | MS.gene72308:intron | 40.0% | |
TGGAATCCAAAGTGGTATCT+TGG | - | chr1.4:49774418-49774437 | MS.gene72308:intron | 40.0% | |
TGGCTAGAAATTGACCCTTA+AGG | - | chr1.4:49774149-49774168 | MS.gene72308:intron | 40.0% | |
TGTGAAGAAACCAAAACAGC+AGG | + | chr1.4:49774481-49774500 | None:intergenic | 40.0% | |
TTCAAAGCAATGCCTACGTT+AGG | - | chr1.4:49775859-49775878 | MS.gene72308:intron | 40.0% | |
TTTAAGAGTTTGGTCCATGG+AGG | + | chr1.4:49776278-49776297 | None:intergenic | 40.0% | |
! | CATCTGAAGCATGACTCTTA+TGG | + | chr1.4:49773722-49773741 | None:intergenic | 40.0% |
! | CCGCTGATTGGTTGAAAAAA+AGG | + | chr1.4:49777000-49777019 | None:intergenic | 40.0% |
! | CGGAAGATAACCTAAGTTGA+AGG | + | chr1.4:49777223-49777242 | None:intergenic | 40.0% |
! | GGTTTTTGCAGTTTTCATGC+TGG | - | chr1.4:49774618-49774637 | MS.gene72308:intron | 40.0% |
! | GTTTTTGTGAGCTTCCTCTT+TGG | - | chr1.4:49773090-49773109 | MS.gene72308:intron | 40.0% |
! | TCCAAAGATTCTCCCTTTTC+AGG | - | chr1.4:49772967-49772986 | MS.gene72308:intron | 40.0% |
! | TGATTTCTGGAGATGTTGGT+TGG | + | chr1.4:49772886-49772905 | None:intergenic | 40.0% |
! | TGTACTCTTTTTCCTCCTTG+CGG | - | chr1.4:49774753-49774772 | MS.gene72308:intron | 40.0% |
! | TTTTTGTTCCTACCAGGGTA+TGG | - | chr1.4:49775150-49775169 | MS.gene72308:intron | 40.0% |
!! | GTTTTTGTGATTTGGCTAGG+AGG | - | chr1.4:49774597-49774616 | MS.gene72308:intron | 40.0% |
!!! | AGGGTTTTAAAGAGAAGGAG+AGG | + | chr1.4:49774064-49774083 | None:intergenic | 40.0% |
!!! | GTTTTAAAGAGAAGGAGAGG+AGG | + | chr1.4:49774061-49774080 | None:intergenic | 40.0% |
!!! | GTTTTGGGGAAAGATGGAAT+TGG | - | chr1.4:49773916-49773935 | MS.gene72308:intron | 40.0% |
!!! | TGAAGTGTTTTGGGGAAAGA+TGG | - | chr1.4:49773910-49773929 | MS.gene72308:intron | 40.0% |
!!! | TGCTGTTTTGGTTTCTTCAC+AGG | - | chr1.4:49774480-49774499 | MS.gene72308:intron | 40.0% |
AAAGCATGGTTACCGCTGAT+TGG | + | chr1.4:49777012-49777031 | None:intergenic | 45.0% | |
AACTTAGGTTATCTTCCGGG+AGG | - | chr1.4:49777225-49777244 | MS.gene72308:CDS | 45.0% | |
AATATGGATCTCACGCCATC+AGG | - | chr1.4:49776338-49776357 | MS.gene72308:intron | 45.0% | |
AATCAGCGGTAACCATGCTT+TGG | - | chr1.4:49777011-49777030 | MS.gene72308:intron | 45.0% | |
AATGGCGATGGAATCCAAAG+TGG | - | chr1.4:49774410-49774429 | MS.gene72308:intron | 45.0% | |
ACAGTCATTGATGCGACATG+TGG | - | chr1.4:49775197-49775216 | MS.gene72308:intron | 45.0% | |
ACATAATTCGCGGTTCGTTC+CGG | - | chr1.4:49776724-49776743 | MS.gene72308:intron | 45.0% | |
ACATGTTTCCATACCCTGGT+AGG | + | chr1.4:49775161-49775180 | None:intergenic | 45.0% | |
ACTATGCTAATAAGCCCTCC+TGG | + | chr1.4:49777321-49777340 | None:intergenic | 45.0% | |
AGAGTGGAGAGTGAGAAACT+TGG | + | chr1.4:49776908-49776927 | None:intergenic | 45.0% | |
AGCATCGCTTAGTTCCAATG+AGG | - | chr1.4:49775337-49775356 | MS.gene72308:intron | 45.0% | |
AGGAGGGCTTATTAGCATAG+TGG | - | chr1.4:49777320-49777339 | MS.gene72308:CDS | 45.0% | |
ATTGATGCGACATGTGGCAA+CGG | - | chr1.4:49775203-49775222 | MS.gene72308:intron | 45.0% | |
CACATTCTATATGCAAGCGC+TGG | + | chr1.4:49774204-49774223 | None:intergenic | 45.0% | |
CACCTTAGCATTGCGCAATT+TGG | - | chr1.4:49775232-49775251 | MS.gene72308:intron | 45.0% | |
CAGAAAATATCGCCGCAAAC+CGG | - | chr1.4:49775560-49775579 | MS.gene72308:intron | 45.0% | |
CAGAGAGACGATGCAAGTTA+AGG | + | chr1.4:49775896-49775915 | None:intergenic | 45.0% | |
CTTGGAAGTGGAGTTTATCG+AGG | - | chr1.4:49774359-49774378 | MS.gene72308:intron | 45.0% | |
GACAACATGTTTCCATACCC+TGG | + | chr1.4:49775165-49775184 | None:intergenic | 45.0% | |
GAGATGTTGAGAGTCTCTGA+TGG | - | chr1.4:49773743-49773762 | MS.gene72308:intron | 45.0% | |
GCAGAAGTCTATTGGGCAAT+GGG | - | chr1.4:49775011-49775030 | MS.gene72308:intron | 45.0% | |
GCTTGACATAGCACTCCAAA+TGG | + | chr1.4:49776194-49776213 | None:intergenic | 45.0% | |
GTTAGCTGTGCTTGTAACCA+TGG | - | chr1.4:49776633-49776652 | MS.gene72308:intron | 45.0% | |
GTTTCTTCACAGGCTGTTCA+GGG | - | chr1.4:49774490-49774509 | MS.gene72308:intron | 45.0% | |
TAACCATGCTTTGGTACGCT+TGG | - | chr1.4:49777020-49777039 | MS.gene72308:intron | 45.0% | |
TACGCGACAGGAGAAGAATT+CGG | - | chr1.4:49776773-49776792 | MS.gene72308:intron | 45.0% | |
TGCAGAAGTCTATTGGGCAA+TGG | - | chr1.4:49775010-49775029 | MS.gene72308:intron | 45.0% | |
TGGTTCAATTGGCAGTGTAG+TGG | - | chr1.4:49774638-49774657 | MS.gene72308:intron | 45.0% | |
TGTGTGAGCATAGCTCAAGT+TGG | + | chr1.4:49774236-49774255 | None:intergenic | 45.0% | |
TTGGAGAAGGAAGAAGGAAG+AGG | + | chr1.4:49772867-49772886 | None:intergenic | 45.0% | |
TTGGGGAAAGATGGAATTGG+CGG | - | chr1.4:49773919-49773938 | MS.gene72308:intron | 45.0% | |
! | AGTACCGAATTCGGGTACTT+CGG | + | chr1.4:49777072-49777091 | None:intergenic | 45.0% |
! | GCTAGGCGGTTTTTGTGATT+TGG | - | chr1.4:49774589-49774608 | MS.gene72308:intron | 45.0% |
! | GTACTCTTTTTCCTCCTTGC+GGG | - | chr1.4:49774754-49774773 | MS.gene72308:intron | 45.0% |
! | TGGAGTGCTATGTCAAGCAA+TGG | - | chr1.4:49776196-49776215 | MS.gene72308:intron | 45.0% |
! | TGTTGGTTGGAGAAGGAAGA+AGG | + | chr1.4:49772873-49772892 | None:intergenic | 45.0% |
!! | AGGCTTGTTGCCTTCAACTT+AGG | - | chr1.4:49777210-49777229 | MS.gene72308:CDS | 45.0% |
!! | AGGGTCAATTTCTAGCCACT+AGG | + | chr1.4:49774147-49774166 | None:intergenic | 45.0% |
!! | CGGGCTTTAAAGGATGATTG+TGG | - | chr1.4:49776136-49776155 | MS.gene72308:intron | 45.0% |
!! | GAGCATAGCTCAAGTTGGTA+GGG | + | chr1.4:49774231-49774250 | None:intergenic | 45.0% |
!! | GCGGTTTTTGTGATTTGGCT+AGG | - | chr1.4:49774594-49774613 | MS.gene72308:intron | 45.0% |
!! | TGAGCATAGCTCAAGTTGGT+AGG | + | chr1.4:49774232-49774251 | None:intergenic | 45.0% |
!! | TGGTACGTGAGTACCGAATT+CGG | + | chr1.4:49777081-49777100 | None:intergenic | 45.0% |
!!! | TTGGTTTTTTGCGCGTCTGA+AGG | - | chr1.4:49774437-49774456 | MS.gene72308:intron | 45.0% |
!!! | ATGTTTTTTTAAATTTTTTT+AGG | - | chr1.4:49773367-49773386 | MS.gene72308:intron | 5.0% |
!!! | TGTTTTTTTAAATTTTTTTA+GGG | - | chr1.4:49773368-49773387 | MS.gene72308:intron | 5.0% |
!!! | TTATTATTATTTTGTTTAAT+GGG | + | chr1.4:49772928-49772947 | None:intergenic | 5.0% |
ATTCGGGTACTTCGGCGTAT+TGG | + | chr1.4:49777064-49777083 | None:intergenic | 50.0% | |
ATTGCGTCACATCCATGGTC+GGG | - | chr1.4:49776117-49776136 | MS.gene72308:intron | 50.0% | |
CAAGATGCACTTAACCCGCA+AGG | + | chr1.4:49774771-49774790 | None:intergenic | 50.0% | |
CATTGCGTCACATCCATGGT+CGG | - | chr1.4:49776116-49776135 | MS.gene72308:intron | 50.0% | |
CGCTTAGTTCCAATGAGGTG+AGG | - | chr1.4:49775342-49775361 | MS.gene72308:intron | 50.0% | |
CTCACATTGCGTCACATCCA+TGG | - | chr1.4:49776112-49776131 | MS.gene72308:intron | 50.0% | |
CTCACTCAGTCCTCAACTCA+TGG | - | chr1.4:49776942-49776961 | MS.gene72308:intron | 50.0% | |
GAACCAAGCGTACCAAAGCA+TGG | + | chr1.4:49777026-49777045 | None:intergenic | 50.0% | |
GGTTGCTTCGGTTTCTGTCT+TGG | - | chr1.4:49774564-49774583 | MS.gene72308:intron | 50.0% | |
GGTTTCTTCACAGGCTGTTC+AGG | - | chr1.4:49774489-49774508 | MS.gene72308:intron | 50.0% | |
TATACAGCTTCGGTACGCTC+CGG | - | chr1.4:49776808-49776827 | MS.gene72308:intron | 50.0% | |
TGAGGACTGCTGAGGAGTTA+AGG | - | chr1.4:49775360-49775379 | MS.gene72308:intron | 50.0% | |
TGTGGATGTGGAGGAAGTAG+TGG | - | chr1.4:49774318-49774337 | MS.gene72308:CDS | 50.0% | |
TTTCTGTCTTGGCAGCTAGG+CGG | - | chr1.4:49774575-49774594 | MS.gene72308:intron | 50.0% | |
! | CATCCATGGTCGGGCTTTAA+AGG | - | chr1.4:49776126-49776145 | MS.gene72308:intron | 50.0% |
! | CTGGAGATGTTGGTTGGAGA+AGG | + | chr1.4:49772880-49772899 | None:intergenic | 50.0% |
! | TACGCCGAAGTACCCGAATT+CGG | - | chr1.4:49777065-49777084 | MS.gene72308:CDS | 50.0% |
!! | CATCCTTTAAAGCCCGACCA+TGG | + | chr1.4:49776132-49776151 | None:intergenic | 50.0% |
!! | GGTACGTGAGTACCGAATTC+GGG | + | chr1.4:49777080-49777099 | None:intergenic | 50.0% |
!! | TGATGGCTTCCCTGCTGTTT+TGG | - | chr1.4:49774468-49774487 | MS.gene72308:intron | 50.0% |
CAATGAGGTGAGGACTGCTG+AGG | - | chr1.4:49775352-49775371 | MS.gene72308:intron | 55.0% | |
CGGTTTCTGTCTTGGCAGCT+AGG | - | chr1.4:49774572-49774591 | MS.gene72308:intron | 55.0% | |
CTCAGCAGTCCTCACCTCAT+TGG | + | chr1.4:49775354-49775373 | None:intergenic | 55.0% | |
CTGCTGCTGTCTGGTTGCTT+CGG | - | chr1.4:49774552-49774571 | MS.gene72308:intron | 55.0% | |
GATGCACTTAACCCGCAAGG+AGG | + | chr1.4:49774768-49774787 | None:intergenic | 55.0% | |
! | ACAACGGCTTGTCCGGTTTG+CGG | + | chr1.4:49775575-49775594 | None:intergenic | 55.0% |
! | CTTTGGTACGCTTGGTTCGC+TGG | - | chr1.4:49777028-49777047 | MS.gene72308:CDS | 55.0% |
CAACCAGACAGCAGCAGGCA+TGG | + | chr1.4:49774549-49774568 | None:intergenic | 60.0% | |
CGAAGCAACCAGACAGCAGC+AGG | + | chr1.4:49774554-49774573 | None:intergenic | 60.0% | |
GTGGTTTATGTCGGGCACCC+TGG | - | chr1.4:49777339-49777358 | MS.gene72308:CDS | 60.0% | |
GTTCGTTCCGGTACGCGGTA+CGG | - | chr1.4:49776736-49776755 | MS.gene72308:intron | 60.0% | |
GTTTATGTCGGGCACCCTGG+TGG | - | chr1.4:49777342-49777361 | MS.gene72308:CDS | 60.0% | |
TAGCCATGCCTGCTGCTGTC+TGG | - | chr1.4:49774543-49774562 | MS.gene72308:intron | 60.0% | |
TCCGGTACGCGGTACGGATA+CGG | - | chr1.4:49776742-49776761 | MS.gene72308:intron | 60.0% | |
ATGTCGGGCACCCTGGTGGA+CGG | - | chr1.4:49777346-49777365 | MS.gene72308:CDS | 65.0% | |
CCCGTATCCGTACCGCGTAC+CGG | + | chr1.4:49776746-49776765 | None:intergenic | 65.0% | |
CCGGTACGCGGTACGGATAC+GGG | - | chr1.4:49776743-49776762 | MS.gene72308:intron | 65.0% | |
GCGGTACGGATACGGGTTCG+CGG | - | chr1.4:49776750-49776769 | MS.gene72308:intron | 65.0% | |
TCGCGGTTCGTTCCGGTACG+CGG | - | chr1.4:49776731-49776750 | MS.gene72308:intron | 65.0% | |
ACGGGTTCGCGGTACGCGAC+AGG | - | chr1.4:49776761-49776780 | MS.gene72308:intron | 70.0% | |
!! | AGGGTGCTGCAGCGCTGCTG+GGG | - | chr1.4:49774509-49774528 | MS.gene72308:intron | 70.0% |
!! | CAGGGTGCTGCAGCGCTGCT+GGG | - | chr1.4:49774508-49774527 | MS.gene72308:intron | 70.0% |
!! | TCAGGGTGCTGCAGCGCTGC+TGG | - | chr1.4:49774507-49774526 | MS.gene72308:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 49772799 | 49777371 | 49772799 | ID=MS.gene72308 |
chr1.4 | mRNA | 49772799 | 49777371 | 49772799 | ID=MS.gene72308.t1;Parent=MS.gene72308 |
chr1.4 | exon | 49777182 | 49777371 | 49777182 | ID=MS.gene72308.t1.exon1;Parent=MS.gene72308.t1 |
chr1.4 | CDS | 49777182 | 49777371 | 49777182 | ID=cds.MS.gene72308.t1;Parent=MS.gene72308.t1 |
chr1.4 | exon | 49777028 | 49777094 | 49777028 | ID=MS.gene72308.t1.exon2;Parent=MS.gene72308.t1 |
chr1.4 | CDS | 49777028 | 49777094 | 49777028 | ID=cds.MS.gene72308.t1;Parent=MS.gene72308.t1 |
chr1.4 | exon | 49774812 | 49775004 | 49774812 | ID=MS.gene72308.t1.exon3;Parent=MS.gene72308.t1 |
chr1.4 | CDS | 49774812 | 49775004 | 49774812 | ID=cds.MS.gene72308.t1;Parent=MS.gene72308.t1 |
chr1.4 | exon | 49774290 | 49774363 | 49774290 | ID=MS.gene72308.t1.exon4;Parent=MS.gene72308.t1 |
chr1.4 | CDS | 49774290 | 49774363 | 49774290 | ID=cds.MS.gene72308.t1;Parent=MS.gene72308.t1 |
chr1.4 | exon | 49772799 | 49772958 | 49772799 | ID=MS.gene72308.t1.exon5;Parent=MS.gene72308.t1 |
chr1.4 | CDS | 49772799 | 49772958 | 49772799 | ID=cds.MS.gene72308.t1;Parent=MS.gene72308.t1 |
Gene Sequence |
Protein sequence |