Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72452.t1 | XP_013464521.1 | 98.6 | 294 | 4 | 0 | 1 | 294 | 1 | 294 | 1.10E-165 | 592.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72452.t1 | Q9SYM2 | 51.4 | 282 | 123 | 4 | 1 | 273 | 1 | 277 | 3.2e-68 | 260.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72452.t1 | A0A072VAB5 | 98.6 | 294 | 4 | 0 | 1 | 294 | 1 | 294 | 8.2e-166 | 592.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene72452.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050946 | MS.gene72452 | 0.807396 | 5.16E-50 | -1.69E-46 |
| MS.gene058551 | MS.gene72452 | 0.837511 | 4.98E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72452.t1 | MTR_2g073370 | 98.639 | 294 | 4 | 0 | 1 | 294 | 1 | 294 | 0.0 | 610 |
| MS.gene72452.t1 | MTR_4g067320 | 35.294 | 289 | 122 | 9 | 1 | 274 | 1 | 239 | 2.12e-43 | 148 |
| MS.gene72452.t1 | MTR_4g067320 | 60.550 | 109 | 43 | 0 | 1 | 109 | 1 | 109 | 5.25e-43 | 147 |
| MS.gene72452.t1 | MTR_2g099010 | 40.104 | 192 | 80 | 3 | 1 | 192 | 1 | 157 | 2.63e-42 | 145 |
| MS.gene72452.t1 | MTR_2g099010 | 40.104 | 192 | 80 | 3 | 1 | 192 | 1 | 157 | 2.76e-42 | 145 |
| MS.gene72452.t1 | MTR_3g117320 | 50.685 | 146 | 71 | 1 | 1 | 145 | 1 | 146 | 5.72e-41 | 142 |
| MS.gene72452.t1 | MTR_4g071200 | 54.717 | 106 | 47 | 1 | 1 | 105 | 1 | 106 | 8.60e-36 | 128 |
| MS.gene72452.t1 | MTR_3g113070 | 54.717 | 106 | 46 | 1 | 1 | 104 | 1 | 106 | 1.20e-35 | 128 |
| MS.gene72452.t1 | MTR_1g023260 | 54.286 | 105 | 47 | 1 | 1 | 104 | 1 | 105 | 1.55e-35 | 129 |
| MS.gene72452.t1 | MTR_1g023260 | 54.286 | 105 | 47 | 1 | 1 | 104 | 1 | 105 | 4.13e-35 | 125 |
| MS.gene72452.t1 | MTR_5g021580 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.44e-26 | 103 |
| MS.gene72452.t1 | MTR_5g021580 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.63e-26 | 103 |
| MS.gene72452.t1 | MTR_1g013450 | 41.667 | 96 | 47 | 1 | 5 | 100 | 6 | 92 | 1.22e-18 | 84.7 |
| MS.gene72452.t1 | MTR_3g105710 | 44.792 | 96 | 44 | 1 | 5 | 100 | 6 | 92 | 2.03e-18 | 83.6 |
| MS.gene72452.t1 | MTR_7g018170 | 43.478 | 92 | 43 | 1 | 5 | 96 | 26 | 108 | 2.17e-17 | 82.0 |
| MS.gene72452.t1 | MTR_4g128930 | 38.043 | 92 | 48 | 1 | 5 | 96 | 22 | 104 | 2.14e-14 | 73.2 |
| MS.gene72452.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 3.23e-11 | 63.9 |
| MS.gene72452.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 5.19e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72452.t1 | AT1G78600 | 52.448 | 286 | 114 | 4 | 1 | 273 | 1 | 277 | 4.45e-93 | 278 |
| MS.gene72452.t1 | AT1G78600 | 48.693 | 306 | 115 | 5 | 1 | 273 | 1 | 297 | 1.87e-91 | 274 |
| MS.gene72452.t1 | AT1G06040 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 1.98e-46 | 154 |
| MS.gene72452.t1 | AT1G06040 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 7.71e-46 | 155 |
| MS.gene72452.t1 | AT2G31380 | 61.468 | 109 | 42 | 0 | 1 | 109 | 1 | 109 | 2.48e-42 | 145 |
| MS.gene72452.t1 | AT4G10240 | 49.701 | 167 | 62 | 5 | 1 | 161 | 1 | 151 | 7.71e-41 | 139 |
| MS.gene72452.t1 | AT1G75540 | 40.090 | 222 | 114 | 6 | 1 | 211 | 1 | 214 | 5.68e-36 | 132 |
| MS.gene72452.t1 | AT4G39070 | 49.640 | 139 | 68 | 2 | 1 | 138 | 1 | 138 | 1.91e-35 | 128 |
| MS.gene72452.t1 | AT2G21320 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.59e-26 | 102 |
| MS.gene72452.t1 | AT4G38960 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 3.01e-26 | 102 |
| MS.gene72452.t1 | AT4G38960 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 3.01e-26 | 102 |
| MS.gene72452.t1 | AT5G15850 | 42.857 | 98 | 47 | 1 | 5 | 102 | 12 | 100 | 3.46e-18 | 84.0 |
| MS.gene72452.t1 | AT2G24790 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 1.14e-17 | 81.6 |
| MS.gene72452.t1 | AT5G24930 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.16e-17 | 82.4 |
| MS.gene72452.t1 | AT4G38960 | 30.939 | 181 | 78 | 4 | 1 | 138 | 1 | 177 | 1.27e-17 | 80.5 |
| MS.gene72452.t1 | AT3G02380 | 43.011 | 93 | 44 | 1 | 5 | 97 | 16 | 99 | 1.81e-17 | 81.6 |
| MS.gene72452.t1 | AT2G24790 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 3.35e-17 | 79.0 |
| MS.gene72452.t1 | AT5G15840 | 37.755 | 98 | 52 | 1 | 5 | 102 | 20 | 108 | 5.82e-16 | 77.8 |
| MS.gene72452.t1 | AT5G15840 | 39.785 | 93 | 47 | 1 | 5 | 97 | 20 | 103 | 1.27e-15 | 75.5 |
| MS.gene72452.t1 | AT2G47890 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.21e-12 | 67.4 |
| MS.gene72452.t1 | AT2G47890 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.21e-12 | 67.8 |
| MS.gene72452.t1 | AT2G47890 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 3.26e-12 | 65.5 |
| MS.gene72452.t1 | AT5G57660 | 34.783 | 92 | 47 | 2 | 5 | 96 | 22 | 100 | 3.44e-11 | 63.5 |
| MS.gene72452.t1 | AT4G38960 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 5.73e-11 | 60.1 |
| MS.gene72452.t1 | AT4G38960 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 5.73e-11 | 60.1 |
Find 59 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATTGGATCTTAAAAT+AGG | 0.258790 | 2.3:+22660772 | None:intergenic |
| CCACCAGCCAAGGTGTCTTA+TGG | 0.275750 | 2.3:-22661635 | MS.gene72452:CDS |
| CCTACCGAAGCCGGAGGATT+TGG | 0.277213 | 2.3:-22661665 | MS.gene72452:CDS |
| GTATTCCATTTCCTCTTCAT+TGG | 0.294524 | 2.3:+22660759 | None:intergenic |
| AATTCGTTGAAGACAGATTC+TGG | 0.304552 | 2.3:-22661773 | MS.gene72452:CDS |
| CGATAATGCTCTATTTGTTC+CGG | 0.320546 | 2.3:-22660629 | MS.gene72452:CDS |
| TACCATGATCAGTAGCTTCT+AGG | 0.347736 | 2.3:+22661804 | None:intergenic |
| CCCTTCACCACCTACAGCTT+CGG | 0.385052 | 2.3:-22660686 | MS.gene72452:CDS |
| AAGATCCAATGAAGAGGAAA+TGG | 0.393956 | 2.3:-22660764 | MS.gene72452:CDS |
| GGAACTGTCCAAGACGAATC+TGG | 0.395347 | 2.3:+22660715 | None:intergenic |
| CTACAGCTTCGGGACTAAAC+TGG | 0.402412 | 2.3:-22660675 | MS.gene72452:CDS |
| ATCTGTCTTCAACGAATTTG+AGG | 0.404754 | 2.3:+22661778 | None:intergenic |
| TGATGAAGCTGCTTTGTGTT+GGG | 0.412693 | 2.3:-22663171 | MS.gene72452:CDS |
| ACCTGACAAATATCACATTT+AGG | 0.415653 | 2.3:+22663065 | None:intergenic |
| ATCTCCAAATCCTCCGGCTT+CGG | 0.419987 | 2.3:+22661661 | None:intergenic |
| CCTTCACCACCTACAGCTTC+GGG | 0.422261 | 2.3:-22660685 | MS.gene72452:CDS |
| ATCTTCTTCTGTCTCGAGAA+AGG | 0.428233 | 2.3:-22661729 | MS.gene72452:CDS |
| TAAATCTTTCAGGAAGCATT+CGG | 0.445968 | 2.3:-22661947 | MS.gene72452:intron |
| GCCTAAATGTGATATTTGTC+AGG | 0.459129 | 2.3:-22663066 | MS.gene72452:intron |
| CTGATGAAGCTGCTTTGTGT+TGG | 0.463397 | 2.3:-22663172 | MS.gene72452:CDS |
| GCTCTATTTGTTCCGGACAT+TGG | 0.477192 | 2.3:-22660622 | MS.gene72452:CDS |
| CACTGCAAATGCATTTGTCT+CGG | 0.482317 | 2.3:-22661864 | MS.gene72452:CDS |
| TATGGTGGTGGTTCTAACTC+TGG | 0.487845 | 2.3:-22661617 | MS.gene72452:CDS |
| GAAATGTTGCCTACCGAAGC+CGG | 0.489819 | 2.3:-22661674 | MS.gene72452:CDS |
| TGGATGGATCATCAAATTCA+AGG | 0.498918 | 2.3:-22661526 | MS.gene72452:CDS |
| CAGTCAGAATTATAACTACA+TGG | 0.503150 | 2.3:-22661546 | MS.gene72452:CDS |
| CCCGAAGCTGTAGGTGGTGA+AGG | 0.505838 | 2.3:+22660685 | None:intergenic |
| GCCAAGGTGTCTTATGGTGG+TGG | 0.508324 | 2.3:-22661629 | MS.gene72452:CDS |
| CCACCATAAGACACCTTGGC+TGG | 0.515474 | 2.3:+22661632 | None:intergenic |
| TGGAAAATCTCCAAATCCTC+CGG | 0.517904 | 2.3:+22661655 | None:intergenic |
| CAGAATTATAACTACATGGA+TGG | 0.518101 | 2.3:-22661542 | MS.gene72452:CDS |
| TGAGAAGAAGAAGCAGATAG+AGG | 0.527824 | 2.3:+22663092 | None:intergenic |
| ACCGTGTTCCAGATTCGTCT+TGG | 0.527866 | 2.3:-22660723 | MS.gene72452:CDS |
| ACTGCAAATGCATTTGTCTC+GGG | 0.534296 | 2.3:-22661863 | MS.gene72452:CDS |
| TCATTGTACTCAGATGATTG+AGG | 0.549321 | 2.3:+22661695 | None:intergenic |
| CTTCTCACCGGTGTAAAAGT+CGG | 0.551046 | 2.3:-22661827 | MS.gene72452:CDS |
| GGCCTAGAAGCTACTGATCA+TGG | 0.554246 | 2.3:-22661806 | MS.gene72452:CDS |
| AATGGAATACAACGACTACA+TGG | 0.564075 | 2.3:-22660746 | MS.gene72452:CDS |
| ATGCTAGTAAAGCCAATGTC+CGG | 0.566880 | 2.3:+22660610 | None:intergenic |
| CATCAAAGGTTTCTTCTCAC+CGG | 0.568029 | 2.3:-22661839 | MS.gene72452:CDS |
| CCAGCCAAGGTGTCTTATGG+TGG | 0.576805 | 2.3:-22661632 | MS.gene72452:CDS |
| CATTTGTCTCGGGACATCAA+AGG | 0.579671 | 2.3:-22661853 | MS.gene72452:CDS |
| CCAAATCCTCCGGCTTCGGT+AGG | 0.580489 | 2.3:+22661665 | None:intergenic |
| CAGTTTAGTCCCGAAGCTGT+AGG | 0.586584 | 2.3:+22660676 | None:intergenic |
| CCGAAGCTGTAGGTGGTGAA+GGG | 0.591243 | 2.3:+22660686 | None:intergenic |
| ACCACCACCATAAGACACCT+TGG | 0.592536 | 2.3:+22661628 | None:intergenic |
| TTGTGAAGGTGCTGAAGCTA+AGG | 0.593143 | 2.3:-22663207 | MS.gene72452:CDS |
| CCATAAGACACCTTGGCTGG+TGG | 0.594137 | 2.3:+22661635 | None:intergenic |
| GGATGGATCATCAAATTCAA+GGG | 0.601507 | 2.3:-22661525 | MS.gene72452:intron |
| CATTATCGAATGAATACCGA+GGG | 0.607602 | 2.3:+22660644 | None:intergenic |
| ATTCAGTGTAATGTTTGTGA+AGG | 0.627076 | 2.3:-22663221 | MS.gene72452:CDS |
| GTAGGTGGTGAAGGGATCTG+AGG | 0.637306 | 2.3:+22660694 | None:intergenic |
| TTTAGTCCCGAAGCTGTAGG+TGG | 0.663191 | 2.3:+22660679 | None:intergenic |
| TCCAAGACGAATCTGGAACA+CGG | 0.671574 | 2.3:+22660722 | None:intergenic |
| GAGTTTATGCAGGCTGACAG+TGG | 0.687400 | 2.3:-22660817 | MS.gene72452:intron |
| GCATTATCGAATGAATACCG+AGG | 0.703310 | 2.3:+22660643 | None:intergenic |
| CCAAATTAATGATGACTCCG+CGG | 0.721909 | 2.3:+22660553 | None:intergenic |
| ATGTTGCCTACCGAAGCCGG+AGG | 0.732134 | 2.3:-22661671 | MS.gene72452:CDS |
| ACTCTGGAAACATGTCACAG+TGG | 0.763112 | 2.3:-22661601 | MS.gene72452:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTCAAAAATATAAATAAA+AGG | + | chr2.3:22661064-22661083 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTATTTGATATA+AGG | - | chr2.3:22660773-22660792 | MS.gene72452:CDS | 10.0% |
| !!! | TTTTTATTGATTTATTTGAA+TGG | - | chr2.3:22660814-22660833 | MS.gene72452:intron | 10.0% |
| !! | CTAAAACAATTAAAAACTAA+AGG | + | chr2.3:22661029-22661048 | None:intergenic | 15.0% |
| !! | TCATAAAATCTTATCATTTA+AGG | - | chr2.3:22661308-22661327 | MS.gene72452:intron | 15.0% |
| !! | TGAATAGAAAAAAAAATTGA+GGG | + | chr2.3:22662310-22662329 | None:intergenic | 15.0% |
| !! | TTAGAAACAACTAAAATATT+TGG | - | chr2.3:22661157-22661176 | MS.gene72452:intron | 15.0% |
| !! | TTGAATAGAAAAAAAAATTG+AGG | + | chr2.3:22662311-22662330 | None:intergenic | 15.0% |
| !!! | GAAATCTATAATTTTGTATA+GGG | - | chr2.3:22661202-22661221 | MS.gene72452:intron | 15.0% |
| !!! | TATTGATACTTTACAATTTT+AGG | - | chr2.3:22660989-22661008 | MS.gene72452:intron | 15.0% |
| !!! | TGAAATCTATAATTTTGTAT+AGG | - | chr2.3:22661201-22661220 | MS.gene72452:intron | 15.0% |
| !!! | TTTTAATTGTTTTAGAAAGA+GGG | - | chr2.3:22661034-22661053 | MS.gene72452:intron | 15.0% |
| !!! | TTTTTAATATTTATTTGGAG+TGG | - | chr2.3:22660841-22660860 | MS.gene72452:intron | 15.0% |
| !!! | TTTTTAATTGTTTTAGAAAG+AGG | - | chr2.3:22661033-22661052 | MS.gene72452:intron | 15.0% |
| !!! | TTTTTTTTCTATTCAAATCA+TGG | - | chr2.3:22662315-22662334 | MS.gene72452:intron | 15.0% |
| !! | AAAAATTACTACTATTCTGA+GGG | + | chr2.3:22663207-22663226 | None:intergenic | 20.0% |
| !! | AAATGCAGAAATATTAAGAA+TGG | - | chr2.3:22662450-22662469 | MS.gene72452:intron | 20.0% |
| !! | TATGAAAAATCGTATATACA+AGG | + | chr2.3:22661293-22661312 | None:intergenic | 20.0% |
| !! | TTCATGAAAAAGTAAAAGTT+TGG | - | chr2.3:22660869-22660888 | MS.gene72452:intron | 20.0% |
| !!! | AATAAGTTTAAAACAGCTTA+TGG | - | chr2.3:22662799-22662818 | MS.gene72452:intron | 20.0% |
| !!! | TGAAATATTTGACTTTTGAA+AGG | + | chr2.3:22661260-22661279 | None:intergenic | 20.0% |
| !!! | TTGGTAATATTTTGAGAAAA+TGG | - | chr2.3:22661579-22661598 | MS.gene72452:CDS | 20.0% |
| !!! | TTGTGTTATTTAAATCTTTC+AGG | - | chr2.3:22661828-22661847 | MS.gene72452:CDS | 20.0% |
| !!! | TTTAATTGTTTTAGAAAGAG+GGG | - | chr2.3:22661035-22661054 | MS.gene72452:intron | 20.0% |
| !!! | TTTTATTTGATATAAGGTTG+TGG | - | chr2.3:22660779-22660798 | MS.gene72452:CDS | 20.0% |
| ! | ATCTACAAATTCTCAATGAA+TGG | + | chr2.3:22662344-22662363 | None:intergenic | 25.0% |
| ! | ATGAATATTGCACTTCTAAA+AGG | + | chr2.3:22662549-22662568 | None:intergenic | 25.0% |
| ! | ATGAATGTTGAAAGTAGTAA+AGG | - | chr2.3:22662612-22662631 | MS.gene72452:intron | 25.0% |
| ! | CTAAATATCATAGACCAAAA+GGG | + | chr2.3:22661370-22661389 | None:intergenic | 25.0% |
| ! | GAAAAATTACTACTATTCTG+AGG | + | chr2.3:22663208-22663227 | None:intergenic | 25.0% |
| ! | GGACAAATAACAAATTAACA+AGG | + | chr2.3:22661784-22661803 | None:intergenic | 25.0% |
| ! | TCTTCATTGGATCTTAAAAT+AGG | + | chr2.3:22663016-22663035 | None:intergenic | 25.0% |
| ! | TTAAAACGTTTATCCAAACA+AGG | + | chr2.3:22662668-22662687 | None:intergenic | 25.0% |
| ! | TTAGTTCCAGAATCATATAA+AGG | + | chr2.3:22661119-22661138 | None:intergenic | 25.0% |
| ! | TTATATTCAAGTGCTTATGT+CGG | - | chr2.3:22662859-22662878 | MS.gene72452:intron | 25.0% |
| ! | TTGAAACCTTTATATGATTC+TGG | - | chr2.3:22661110-22661129 | MS.gene72452:intron | 25.0% |
| ! | TTGAAAGGAATAATTTCTTC+TGG | + | chr2.3:22661245-22661264 | None:intergenic | 25.0% |
| !! | AAATCCTTTTCCTTGAATAT+GGG | - | chr2.3:22661504-22661523 | MS.gene72452:intron | 25.0% |
| !! | TGGACAATTGATGAATTTTT+CGG | - | chr2.3:22662204-22662223 | MS.gene72452:intron | 25.0% |
| !!! | TATTTTAAGATCCAATGAAG+AGG | - | chr2.3:22663015-22663034 | MS.gene72452:intron | 25.0% |
| !!! | TGTTAATTTGTTATTTGTCC+TGG | - | chr2.3:22661784-22661803 | MS.gene72452:CDS | 25.0% |
| ACCTGACAAATATCACATTT+AGG | + | chr2.3:22660723-22660742 | None:intergenic | 30.0% | |
| ATTCAGTGTAATGTTTGTGA+AGG | - | chr2.3:22660564-22660583 | MS.gene72452:CDS | 30.0% | |
| CAGAATTATAACTACATGGA+TGG | - | chr2.3:22662243-22662262 | MS.gene72452:intron | 30.0% | |
| CAGTCAGAATTATAACTACA+TGG | - | chr2.3:22662239-22662258 | MS.gene72452:intron | 30.0% | |
| CTCAACAAAAATGTTGACAA+TGG | + | chr2.3:22661755-22661774 | None:intergenic | 30.0% | |
| CTGCATTTACAATGTACATT+AGG | + | chr2.3:22662438-22662457 | None:intergenic | 30.0% | |
| GCTAAATATCATAGACCAAA+AGG | + | chr2.3:22661371-22661390 | None:intergenic | 30.0% | |
| GTTCAAAACTATTTCCTTGT+TGG | - | chr2.3:22661418-22661437 | MS.gene72452:intron | 30.0% | |
| TCAAATAAGCCAATTCAAAC+AGG | - | chr2.3:22662891-22662910 | MS.gene72452:intron | 30.0% | |
| TGTGAACATTGTCATATGAT+TGG | - | chr2.3:22662391-22662410 | MS.gene72452:intron | 30.0% | |
| TTCTATGACAAGTTAGAAAG+TGG | - | chr2.3:22661469-22661488 | MS.gene72452:intron | 30.0% | |
| TTTATGGTTGAATGCTTATG+CGG | - | chr2.3:22662935-22662954 | MS.gene72452:intron | 30.0% | |
| TTTCAAGCTCTTCTTAACTA+TGG | - | chr2.3:22662514-22662533 | MS.gene72452:intron | 30.0% | |
| ! | AGTTTGGTATGATCAAGTTT+TGG | - | chr2.3:22660885-22660904 | MS.gene72452:intron | 30.0% |
| ! | CAAATCCTTTTCCTTGAATA+TGG | - | chr2.3:22661503-22661522 | MS.gene72452:intron | 30.0% |
| ! | CATTGTCAACATTTTTGTTG+AGG | - | chr2.3:22661753-22661772 | MS.gene72452:CDS | 30.0% |
| ! | GACAGAAGAAGATTTTGTAT+CGG | + | chr2.3:22662049-22662068 | None:intergenic | 30.0% |
| ! | TATAAGGTTGTGGATTAAAG+AGG | - | chr2.3:22660789-22660808 | MS.gene72452:CDS | 30.0% |
| !! | AAGCTAATAGTTGTTTTCAC+AGG | - | chr2.3:22662755-22662774 | MS.gene72452:intron | 30.0% |
| !! | GTATGATCAAGTTTTGGTAT+TGG | - | chr2.3:22660891-22660910 | MS.gene72452:intron | 30.0% |
| !! | TAAATCTTTCAGGAAGCATT+CGG | - | chr2.3:22661838-22661857 | MS.gene72452:CDS | 30.0% |
| AAGATCCAATGAAGAGGAAA+TGG | - | chr2.3:22663021-22663040 | MS.gene72452:intron | 35.0% | |
| AAGTTCTTTCAAACTGAACC+AGG | + | chr2.3:22661805-22661824 | None:intergenic | 35.0% | |
| AATGGAATACAACGACTACA+TGG | - | chr2.3:22663039-22663058 | MS.gene72452:intron | 35.0% | |
| AATTCGTTGAAGACAGATTC+TGG | - | chr2.3:22662012-22662031 | MS.gene72452:intron | 35.0% | |
| AGAGAAATCGGAACTAACAT+TGG | - | chr2.3:22661546-22661565 | MS.gene72452:CDS | 35.0% | |
| AGTAGCAGTATATCCTTGTT+TGG | - | chr2.3:22662652-22662671 | MS.gene72452:intron | 35.0% | |
| AGTGCTATATAGGTTTCTTG+TGG | - | chr2.3:22661667-22661686 | MS.gene72452:CDS | 35.0% | |
| ATAGGTTTCTTGTGGTTGTA+TGG | - | chr2.3:22661675-22661694 | MS.gene72452:CDS | 35.0% | |
| ATCTGTCTTCAACGAATTTG+AGG | + | chr2.3:22662010-22662029 | None:intergenic | 35.0% | |
| ATTGGATCACTGACAAAGAT+TGG | - | chr2.3:22662409-22662428 | MS.gene72452:intron | 35.0% | |
| ATTTCTGTCTTCTCTGTTCA+TGG | - | chr2.3:22662362-22662381 | MS.gene72452:intron | 35.0% | |
| CAAAACTATTTCCTTGTTGG+TGG | - | chr2.3:22661421-22661440 | MS.gene72452:intron | 35.0% | |
| CATTATCGAATGAATACCGA+GGG | + | chr2.3:22663144-22663163 | None:intergenic | 35.0% | |
| CGATAATGCTCTATTTGTTC+CGG | - | chr2.3:22663156-22663175 | MS.gene72452:CDS | 35.0% | |
| GCCTAAATGTGATATTTGTC+AGG | - | chr2.3:22660719-22660738 | MS.gene72452:CDS | 35.0% | |
| GGATGGATCATCAAATTCAA+GGG | - | chr2.3:22662260-22662279 | MS.gene72452:intron | 35.0% | |
| GTATTCCATTTCCTCTTCAT+TGG | + | chr2.3:22663029-22663048 | None:intergenic | 35.0% | |
| TAACATTGGAACGTCAACAT+TGG | - | chr2.3:22661560-22661579 | MS.gene72452:CDS | 35.0% | |
| TACTCCCATATTCAAGGAAA+AGG | + | chr2.3:22661511-22661530 | None:intergenic | 35.0% | |
| TCATTGTACTCAGATGATTG+AGG | + | chr2.3:22662093-22662112 | None:intergenic | 35.0% | |
| TGGATGGATCATCAAATTCA+AGG | - | chr2.3:22662259-22662278 | MS.gene72452:intron | 35.0% | |
| ! | AATGAATACCGAGGGTTTTT+CGG | + | chr2.3:22663136-22663155 | None:intergenic | 35.0% |
| ! | CTAAAGTGTCAGTGCTATAT+AGG | - | chr2.3:22661657-22661676 | MS.gene72452:CDS | 35.0% |
| ! | GGTCCTTAAATTTTGTCTAG+AGG | - | chr2.3:22661329-22661348 | MS.gene72452:intron | 35.0% |
| ! | TCTAACTTGTCATAGAAGCA+AGG | + | chr2.3:22661466-22661485 | None:intergenic | 35.0% |
| !!! | GTAGTAATTTTTCAAGACCG+CGG | - | chr2.3:22663215-22663234 | MS.gene72452:CDS | 35.0% |
| AATCGCTTAACACTGCAGTA+AGG | + | chr2.3:22662917-22662936 | None:intergenic | 40.0% | |
| ACTGCAAATGCATTTGTCTC+GGG | - | chr2.3:22661922-22661941 | MS.gene72452:CDS | 40.0% | |
| ATCTTCTTCTGTCTCGAGAA+AGG | - | chr2.3:22662056-22662075 | MS.gene72452:intron | 40.0% | |
| ATGCTAGTAAAGCCAATGTC+CGG | + | chr2.3:22663178-22663197 | None:intergenic | 40.0% | |
| CACTGCAAATGCATTTGTCT+CGG | - | chr2.3:22661921-22661940 | MS.gene72452:CDS | 40.0% | |
| CATCAAAGGTTTCTTCTCAC+CGG | - | chr2.3:22661946-22661965 | MS.gene72452:intron | 40.0% | |
| CTGCAGTGTTAAGCGATTTA+TGG | - | chr2.3:22662919-22662938 | MS.gene72452:intron | 40.0% | |
| GCAAGATACTCCCATATTCA+AGG | + | chr2.3:22661517-22661536 | None:intergenic | 40.0% | |
| GCATTATCGAATGAATACCG+AGG | + | chr2.3:22663145-22663164 | None:intergenic | 40.0% | |
| GCGCCTCTAGACAAAATTTA+AGG | + | chr2.3:22661335-22661354 | None:intergenic | 40.0% | |
| TACCATGATCAGTAGCTTCT+AGG | + | chr2.3:22661984-22662003 | None:intergenic | 40.0% | |
| TACTGTTACTACCACCAACA+AGG | + | chr2.3:22661435-22661454 | None:intergenic | 40.0% | |
| TCCTTCTGATGAGTTTATGC+AGG | - | chr2.3:22662958-22662977 | MS.gene72452:intron | 40.0% | |
| TGAGAAGAAGAAGCAGATAG+AGG | + | chr2.3:22660696-22660715 | None:intergenic | 40.0% | |
| TGCTTGACACACAGAGAAAT+CGG | - | chr2.3:22661534-22661553 | MS.gene72452:CDS | 40.0% | |
| TGGAAAATCTCCAAATCCTC+CGG | + | chr2.3:22662133-22662152 | None:intergenic | 40.0% | |
| ! | TGATGAAGCTGCTTTGTGTT+GGG | - | chr2.3:22660614-22660633 | MS.gene72452:CDS | 40.0% |
| !!! | CGGCTATTTCTTTTGTCTAG+AGG | - | chr2.3:22661858-22661877 | MS.gene72452:CDS | 40.0% |
| CATTTGTCTCGGGACATCAA+AGG | - | chr2.3:22661932-22661951 | MS.gene72452:CDS | 45.0% | |
| CTTCTCACCGGTGTAAAAGT+CGG | - | chr2.3:22661958-22661977 | MS.gene72452:intron | 45.0% | |
| GCAGTAAGGCCTGTTTGAAT+TGG | + | chr2.3:22662903-22662922 | None:intergenic | 45.0% | |
| GCCTGCATAAACTCATCAGA+AGG | + | chr2.3:22662962-22662981 | None:intergenic | 45.0% | |
| GCTCTATTTGTTCCGGACAT+TGG | - | chr2.3:22663163-22663182 | MS.gene72452:CDS | 45.0% | |
| TAAACTGGCCGAAAAACCCT+CGG | - | chr2.3:22663125-22663144 | MS.gene72452:CDS | 45.0% | |
| ! | ACTCTGGAAACATGTCACAG+TGG | - | chr2.3:22662184-22662203 | MS.gene72452:intron | 45.0% |
| ! | CTGATGAAGCTGCTTTGTGT+TGG | - | chr2.3:22660613-22660632 | MS.gene72452:CDS | 45.0% |
| ! | GCTCGTTAGCATTTCCCTTT+TGG | - | chr2.3:22661353-22661372 | MS.gene72452:intron | 45.0% |
| ! | TCCAAGACGAATCTGGAACA+CGG | + | chr2.3:22663066-22663085 | None:intergenic | 45.0% |
| !! | TATGGTGGTGGTTCTAACTC+TGG | - | chr2.3:22662168-22662187 | MS.gene72452:intron | 45.0% |
| !! | TTCTAGGCCGACTTTTACAC+CGG | + | chr2.3:22661968-22661987 | None:intergenic | 45.0% |
| !! | TTGTGAAGGTGCTGAAGCTA+AGG | - | chr2.3:22660578-22660597 | MS.gene72452:CDS | 45.0% |
| !!! | GTATTTTTTTAATATTTATT+TGG | - | chr2.3:22660836-22660855 | MS.gene72452:intron | 5.0% |
| ACCACCACCATAAGACACCT+TGG | + | chr2.3:22662160-22662179 | None:intergenic | 50.0% | |
| ACCGTGTTCCAGATTCGTCT+TGG | - | chr2.3:22663062-22663081 | MS.gene72452:intron | 50.0% | |
| ATCTCCAAATCCTCCGGCTT+CGG | + | chr2.3:22662127-22662146 | None:intergenic | 50.0% | |
| CAGTTTAGTCCCGAAGCTGT+AGG | + | chr2.3:22663112-22663131 | None:intergenic | 50.0% | |
| CTACAGCTTCGGGACTAAAC+TGG | - | chr2.3:22663110-22663129 | MS.gene72452:CDS | 50.0% | |
| GAAATGTTGCCTACCGAAGC+CGG | - | chr2.3:22662111-22662130 | MS.gene72452:intron | 50.0% | |
| GAGTTTATGCAGGCTGACAG+TGG | - | chr2.3:22662968-22662987 | MS.gene72452:intron | 50.0% | |
| GGAACTGTCCAAGACGAATC+TGG | + | chr2.3:22663073-22663092 | None:intergenic | 50.0% | |
| GGCCTAGAAGCTACTGATCA+TGG | - | chr2.3:22661979-22661998 | MS.gene72452:intron | 50.0% | |
| TTTAGTCCCGAAGCTGTAGG+TGG | + | chr2.3:22663109-22663128 | None:intergenic | 50.0% | |
| ! | TGGAGATTTTCCACCAGCCA+AGG | - | chr2.3:22662140-22662159 | MS.gene72452:intron | 50.0% |
| CCACCATAAGACACCTTGGC+TGG | + | chr2.3:22662156-22662175 | None:intergenic | 55.0% | |
| CCATAAGACACCTTGGCTGG+TGG | + | chr2.3:22662153-22662172 | None:intergenic | 55.0% | |
| CCCTTCACCACCTACAGCTT+CGG | - | chr2.3:22663099-22663118 | MS.gene72452:CDS | 55.0% | |
| CCGAAGCTGTAGGTGGTGAA+GGG | + | chr2.3:22663102-22663121 | None:intergenic | 55.0% | |
| CCTTCACCACCTACAGCTTC+GGG | - | chr2.3:22663100-22663119 | MS.gene72452:CDS | 55.0% | |
| GTAGGTGGTGAAGGGATCTG+AGG | + | chr2.3:22663094-22663113 | None:intergenic | 55.0% | |
| ! | CCACCAGCCAAGGTGTCTTA+TGG | - | chr2.3:22662150-22662169 | MS.gene72452:intron | 55.0% |
| ! | CCAGCCAAGGTGTCTTATGG+TGG | - | chr2.3:22662153-22662172 | MS.gene72452:intron | 55.0% |
| ! | GCCAAGGTGTCTTATGGTGG+TGG | - | chr2.3:22662156-22662175 | MS.gene72452:intron | 55.0% |
| ATGTTGCCTACCGAAGCCGG+AGG | - | chr2.3:22662114-22662133 | MS.gene72452:intron | 60.0% | |
| CCAAATCCTCCGGCTTCGGT+AGG | + | chr2.3:22662123-22662142 | None:intergenic | 60.0% | |
| CCCGAAGCTGTAGGTGGTGA+AGG | + | chr2.3:22663103-22663122 | None:intergenic | 60.0% | |
| CCTACCGAAGCCGGAGGATT+TGG | - | chr2.3:22662120-22662139 | MS.gene72452:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 22660558 | 22663249 | 22660558 | ID=MS.gene72452 |
| chr2.3 | mRNA | 22660558 | 22663249 | 22660558 | ID=MS.gene72452.t1;Parent=MS.gene72452 |
| chr2.3 | exon | 22663067 | 22663249 | 22663067 | ID=MS.gene72452.t1.exon1;Parent=MS.gene72452.t1 |
| chr2.3 | CDS | 22663067 | 22663249 | 22663067 | ID=cds.MS.gene72452.t1;Parent=MS.gene72452.t1 |
| chr2.3 | exon | 22661526 | 22661957 | 22661526 | ID=MS.gene72452.t1.exon2;Parent=MS.gene72452.t1 |
| chr2.3 | CDS | 22661526 | 22661957 | 22661526 | ID=cds.MS.gene72452.t1;Parent=MS.gene72452.t1 |
| chr2.3 | exon | 22660558 | 22660827 | 22660558 | ID=MS.gene72452.t1.exon3;Parent=MS.gene72452.t1 |
| chr2.3 | CDS | 22660558 | 22660827 | 22660558 | ID=cds.MS.gene72452.t1;Parent=MS.gene72452.t1 |
| Gene Sequence |
| Protein sequence |
