AlfalfaGEDB | MS.gene050946

M. sativa cultivar XinJiangDaYe / MS.gene050946

KEGG: -
GO: -
PFAM: PF00226.34

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050946.t1	XP_003626177.1	98.2	164	3	0	1	164	1	164	1.80E-83	318.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050946.t1	Q8WWF6	57.6	66	25	1	17	82	4	66	2.8e-13	76.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050946.t1	G7KWI3	98.2	164	3	0	1	164	1	164	1.3e-83	318.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050743	MS.gene050946	0.955772	1.40E-113	-1.69E-46
MS.gene050946	MS.gene054412	0.835485	1.63E-56	-1.69E-46
MS.gene050946	MS.gene058551	0.853682	2.03E-61	-1.69E-46
MS.gene050946	MS.gene06605	0.833243	5.97E-56	-1.69E-46
MS.gene050946	MS.gene06818	0.82124	4.49E-53	-1.69E-46
MS.gene050946	MS.gene072546	0.916426	1.81E-85	-1.69E-46
MS.gene050946	MS.gene30248	0.838569	2.66E-57	-1.69E-46
MS.gene050946	MS.gene50083	0.809355	1.97E-50	-1.69E-46
MS.gene050946	MS.gene62679	0.843409	1.43E-58	-1.69E-46
MS.gene050946	MS.gene72452	0.807396	5.16E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene050946	MS.gene062293	PPI
MS.gene038416	MS.gene050946	PPI
MS.gene017181	MS.gene050946	PPI
MS.gene065503	MS.gene050946	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050946.t1	MTR_7g112360	98.171	164	3	0	1	164	1	164	4.10e-120	335
MS.gene050946.t1	MTR_7g112360	98.936	94	1	0	1	94	1	94	3.60e-65	195
MS.gene050946.t1	MTR_4g085070	60.360	111	42	1	22	130	18	128	1.23e-41	137
MS.gene050946.t1	MTR_8g022310	45.113	133	66	4	8	134	2	133	4.80e-33	116
MS.gene050946.t1	MTR_8g022310	45.113	133	66	4	8	134	2	133	1.15e-32	115
MS.gene050946.t1	MTR_8g022310	45.113	133	66	4	8	134	2	133	1.57e-32	116
MS.gene050946.t1	MTR_8g022310	45.113	133	66	4	8	134	2	133	1.85e-32	115
MS.gene050946.t1	MTR_3g108020	53.030	66	28	1	17	82	5	67	1.10e-18	81.3
MS.gene050946.t1	MTR_2g090705	53.030	66	28	1	17	82	5	67	1.48e-17	78.6
MS.gene050946.t1	MTR_4g078850	48.485	66	31	1	17	82	5	67	5.65e-17	77.0
MS.gene050946.t1	MTR_2g014470	46.970	66	32	1	17	82	5	67	7.74e-17	76.3
MS.gene050946.t1	MTR_4g015840	53.030	66	28	1	17	82	5	67	1.31e-16	75.9
MS.gene050946.t1	MTR_1g110310	40.000	90	50	1	1	90	1	86	4.75e-16	74.7
MS.gene050946.t1	MTR_4g109510	45.588	68	37	0	16	83	8	75	4.83e-16	74.7
MS.gene050946.t1	MTR_2g014480	48.485	66	31	1	17	82	5	67	5.24e-16	74.3
MS.gene050946.t1	MTR_5g037880	44.286	70	35	1	17	82	6	75	5.05e-15	70.9
MS.gene050946.t1	MTR_6g027110	44.776	67	36	1	17	82	3	69	6.98e-15	68.2
MS.gene050946.t1	MTR_7g101070	48.529	68	32	1	17	84	359	423	7.98e-15	71.2
MS.gene050946.t1	MTR_1g052110	44.737	76	38	2	7	82	29	100	2.59e-14	68.9
MS.gene050946.t1	MTR_3g087030	50.000	66	28	2	17	82	83	143	2.65e-14	69.7
MS.gene050946.t1	MTR_7g092380	50.769	65	28	2	18	82	24	84	5.91e-14	67.8
MS.gene050946.t1	MTR_7g109340	48.485	66	30	2	17	82	27	88	4.20e-13	65.9
MS.gene050946.t1	MTR_8g081620	46.970	66	33	1	17	82	61	124	8.08e-13	63.5
MS.gene050946.t1	MTR_4g023470	48.485	66	30	1	17	82	87	148	1.33e-12	64.7
MS.gene050946.t1	MTR_6g026940	43.284	67	37	1	17	82	3	69	1.40e-12	62.8
MS.gene050946.t1	MTR_5g065860	43.836	73	37	1	12	84	44	112	1.67e-12	61.6
MS.gene050946.t1	MTR_3g027580	46.970	66	31	1	17	82	90	151	1.84e-12	64.3
MS.gene050946.t1	MTR_6g027030	43.284	67	37	1	17	82	3	69	2.00e-12	63.2
MS.gene050946.t1	MTR_5g035770	37.975	79	45	1	18	96	27	101	4.19e-12	63.2
MS.gene050946.t1	MTR_5g065160	43.939	66	33	1	17	82	84	145	4.19e-12	63.5
MS.gene050946.t1	MTR_5g065160	43.939	66	33	1	17	82	83	144	4.35e-12	63.2
MS.gene050946.t1	MTR_5g065160	43.939	66	33	1	17	82	77	138	5.23e-12	63.2
MS.gene050946.t1	MTR_5g065160	43.939	66	33	1	17	82	84	145	5.79e-12	63.2
MS.gene050946.t1	MTR_8g006430	39.080	87	45	1	5	91	3	81	1.20e-11	62.0
MS.gene050946.t1	MTR_2g104030	46.377	69	32	2	14	82	68	131	1.52e-11	61.6
MS.gene050946.t1	MTR_4g076240	41.463	82	32	1	18	83	956	1037	5.82e-11	60.1
MS.gene050946.t1	MTR_8g037810	34.921	126	63	4	13	123	3	124	6.12e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050946.t1	AT1G56300	71.069	159	43	2	1	159	1	156	2.39e-71	212
MS.gene050946.t1	AT1G56300	77.679	112	22	2	1	112	1	109	1.44e-52	163
MS.gene050946.t1	AT1G71000	51.748	143	53	4	10	139	3	142	9.09e-40	132
MS.gene050946.t1	AT1G71000	44.025	159	80	4	10	163	3	157	8.50e-38	127
MS.gene050946.t1	AT3G14200	47.967	123	58	3	18	135	14	135	1.19e-32	116
MS.gene050946.t1	AT1G72416	40.816	98	56	2	18	115	7	102	1.57e-22	89.0
MS.gene050946.t1	AT1G72416	40.816	98	56	2	18	115	7	102	1.74e-22	89.0
MS.gene050946.t1	AT1G72416	40.816	98	56	2	18	115	7	102	3.78e-22	88.6
MS.gene050946.t1	AT1G72416	42.222	90	50	2	18	107	7	94	1.29e-21	86.7
MS.gene050946.t1	AT5G25530	37.594	133	67	3	17	149	5	121	2.32e-19	83.6
MS.gene050946.t1	AT1G10350	50.000	66	30	1	17	82	5	67	1.94e-17	78.2
MS.gene050946.t1	AT3G08910	53.030	66	28	1	17	82	5	67	2.77e-17	77.4
MS.gene050946.t1	AT4G28480	53.030	66	28	1	17	82	5	67	2.99e-17	77.0
MS.gene050946.t1	AT1G59725	52.239	67	28	2	17	82	5	68	4.74e-17	77.0
MS.gene050946.t1	AT4G28480	53.030	66	28	1	17	82	5	67	4.83e-17	77.0
MS.gene050946.t1	AT2G20560	53.030	66	28	1	17	82	5	67	1.08e-16	76.3
MS.gene050946.t1	AT5G25530	35.461	141	67	4	17	149	5	129	1.28e-16	75.9
MS.gene050946.t1	AT5G01390	50.000	66	30	1	17	82	5	67	2.62e-16	73.9
MS.gene050946.t1	AT5G01390	50.000	66	30	1	17	82	5	67	3.50e-16	73.9
MS.gene050946.t1	AT5G01390	50.000	66	30	1	17	82	5	67	3.80e-16	73.2
MS.gene050946.t1	AT5G01390	50.000	66	30	1	17	82	5	67	6.99e-16	73.9
MS.gene050946.t1	AT3G47940	49.254	67	30	2	17	82	5	68	3.33e-15	72.0
MS.gene050946.t1	AT2G33735	38.298	94	54	1	17	110	23	112	1.27e-14	66.6
MS.gene050946.t1	AT2G33735	38.298	94	54	1	17	110	23	112	1.27e-14	66.6
MS.gene050946.t1	AT2G41000	43.478	69	38	1	17	84	4	72	1.53e-14	68.2
MS.gene050946.t1	AT5G16650	43.750	80	40	2	9	87	4	79	1.67e-14	66.6
MS.gene050946.t1	AT2G41000	43.478	69	38	1	17	84	4	72	2.74e-14	67.8
MS.gene050946.t1	AT5G03160	45.205	73	37	1	12	84	366	435	4.00e-14	69.3
MS.gene050946.t1	AT3G12170	44.000	75	38	1	8	82	3	73	5.24e-14	67.8
MS.gene050946.t1	AT1G24120	37.975	79	45	1	18	96	22	96	5.43e-14	68.9
MS.gene050946.t1	AT2G22360	48.485	66	29	2	17	82	87	147	5.52e-14	68.9
MS.gene050946.t1	AT5G16650	43.750	80	40	2	9	87	4	79	5.54e-14	66.2
MS.gene050946.t1	AT5G06910	45.205	73	36	1	10	82	23	91	7.94e-14	67.8
MS.gene050946.t1	AT1G74250	41.026	78	45	1	7	83	2	79	8.19e-14	68.6
MS.gene050946.t1	AT3G12170	44.000	75	38	1	8	82	39	109	2.17e-13	66.6
MS.gene050946.t1	AT1G68370	42.466	73	38	1	18	90	19	87	2.54e-13	67.0
MS.gene050946.t1	AT4G39960	48.485	66	29	2	17	82	86	146	9.51e-13	65.5
MS.gene050946.t1	AT4G39960	48.485	66	29	2	17	82	86	146	9.51e-13	65.5
MS.gene050946.t1	AT3G62600	48.485	66	30	1	17	82	27	88	1.38e-12	64.7
MS.gene050946.t1	AT5G12430	46.154	91	27	4	18	92	1026	1110	3.42e-12	63.9
MS.gene050946.t1	AT1G59980	42.424	66	34	1	18	83	25	86	5.91e-12	62.8
MS.gene050946.t1	AT1G59980	42.424	66	34	1	18	83	25	86	6.24e-12	62.8
MS.gene050946.t1	AT5G48030	38.667	75	42	1	17	91	95	165	1.05e-11	62.4
MS.gene050946.t1	AT1G80030	42.424	66	33	2	17	82	76	136	2.84e-11	61.2
MS.gene050946.t1	AT1G80030	42.424	66	33	2	17	82	76	136	3.27e-11	60.8
MS.gene050946.t1	AT1G80030	42.424	66	33	2	17	82	76	136	3.27e-11	60.8
MS.gene050946.t1	AT1G80030	42.424	66	33	2	17	82	76	136	3.27e-11	60.8
MS.gene050946.t1	AT1G28210	38.272	81	44	2	6	86	40	114	3.83e-11	60.5
MS.gene050946.t1	AT1G28210	38.272	81	44	2	6	86	40	114	4.13e-11	60.5
MS.gene050946.t1	AT2G21510	41.429	70	37	1	13	82	3	68	4.64e-11	60.1
MS.gene050946.t1	AT2G21510	41.429	70	37	1	13	82	3	68	4.64e-11	60.1
MS.gene050946.t1	AT1G28210	38.272	81	44	2	6	86	40	114	4.95e-11	60.5
MS.gene050946.t1	AT2G21510	41.429	70	37	1	13	82	3	68	5.05e-11	60.1
MS.gene050946.t1	AT2G21510	41.429	70	37	1	13	82	3	68	5.05e-11	60.1
MS.gene050946.t1	AT2G21510	41.429	70	37	1	13	82	3	68	5.52e-11	60.1
MS.gene050946.t1	AT4G39150	42.857	70	36	1	13	82	3	68	7.89e-11	59.7
MS.gene050946.t1	AT4G39150	42.857	70	36	1	13	82	3	68	7.89e-11	59.7
MS.gene050946.t1	AT4G39150	42.857	70	36	1	13	82	3	68	7.89e-11	59.7

Find 36 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTTGCTATTACTCTGTTCT+TGG	0.198681	7.1:-3737393	MS.gene050946:CDS
GGATTTCGAGCGAATTTATC+AGG	0.209743	7.1:+3737217	None:intergenic
CAAATTCAAGAAGCATATTC+AGG	0.256213	7.1:-3737160	MS.gene050946:intron
TTGGCTTCTCCGGCAGTTGT+AGG	0.330200	7.1:+3737196	None:intergenic
TCTTCCCAGCCGTCTGATCT+TGG	0.344100	7.1:+3736315	None:intergenic
GCGGCAATGATTGCTGCGCT+TGG	0.404589	7.1:+3736259	None:intergenic
AATTTGCTGAAACCGTCGTT+TGG	0.414220	7.1:+3737177	None:intergenic
GTTGAGATGGTAGGTGGAGA+TGG	0.451612	7.1:-3736356	MS.gene050946:CDS
ACAAAGGATGTTTGTTGAGA+TGG	0.470153	7.1:-3736369	MS.gene050946:CDS
AAACCGTCGTTTGGCTTCTC+CGG	0.481969	7.1:+3737186	None:intergenic
TTGAACCAAGATCAGACGGC+TGG	0.499992	7.1:-3736320	MS.gene050946:CDS
AAAAGATCAATGTACGATGC+TGG	0.500396	7.1:-3737027	MS.gene050946:CDS
TGCTTACCGCAAACTCGCTA+TGG	0.507423	7.1:-3737334	MS.gene050946:intron
CGTTTACCATAGCGAGTTTG+CGG	0.522874	7.1:+3737328	None:intergenic
GATCAGACGGCTGGGAAGAG+AGG	0.537894	7.1:-3736311	MS.gene050946:CDS
AGTGCGAATATCAGAGGAGG+AGG	0.553290	7.1:+3737356	None:intergenic
ACTTGGTCTTCTTCTTCAAG+AGG	0.556126	7.1:+3736994	None:intergenic
GCTCGAAATCCTACAACTGC+CGG	0.560164	7.1:-3737205	MS.gene050946:CDS
GGGAAGAGAGGACGCTCAAG+TGG	0.569154	7.1:-3736299	MS.gene050946:CDS
TGATTTGAACCAAGATCAGA+CGG	0.588129	7.1:-3736324	MS.gene050946:CDS
AGAAGATCTACTACCACCGT+TGG	0.599024	7.1:+3737413	None:intergenic
GATGAATAATGTCAAAGATG+AGG	0.606591	7.1:-3736541	MS.gene050946:intron
GATTTCGAGCGAATTTATCA+GGG	0.606606	7.1:+3737218	None:intergenic
TGAACCAAGATCAGACGGCT+GGG	0.607458	7.1:-3736319	MS.gene050946:CDS
CAAGAAGGAGGAGGATCCAA+CGG	0.620400	7.1:-3737429	MS.gene050946:CDS
GGACGCTCAAGTGGATCAAG+AGG	0.624597	7.1:-3736290	MS.gene050946:CDS
ATGTTTGTTGAGATGGTAGG+TGG	0.628226	7.1:-3736362	MS.gene050946:CDS
GTAAGCAGTGCGAATATCAG+AGG	0.644250	7.1:+3737350	None:intergenic
CCAACGGTGATGGATCAAGA+AGG	0.647408	7.1:-3737444	None:intergenic
AGGATGTTTGTTGAGATGGT+AGG	0.652987	7.1:-3736365	MS.gene050946:CDS
AGCAGTGCGAATATCAGAGG+AGG	0.654808	7.1:+3737353	None:intergenic
GTGATGGATCAAGAAGGAGG+AGG	0.667540	7.1:-3737438	MS.gene050946:CDS
ACGGTGATGGATCAAGAAGG+AGG	0.684880	7.1:-3737441	None:intergenic
ACAGTTTGGAGGATCTACAA+AGG	0.691000	7.1:-3736385	MS.gene050946:CDS
CTGCCGGAGAAGCCAAACGA+CGG	0.702205	7.1:-3737189	MS.gene050946:CDS
GAAGGAGGAGGATCCAACGG+TGG	0.737111	7.1:-3737426	MS.gene050946:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTAAAATAAAAATTAAAAA+AGG	+	chr7.1:3736884-3736903	None:intergenic	0.0%
!!!	TTCATTTTTTTTACCAAAAA+AGG	+	chr7.1:3737200-3737219	None:intergenic	15.0%
!!!	TTTTTTGGTAAAAAAAATGA+AGG	-	chr7.1:3737199-3737218	MS.gene050946:CDS	15.0%
!!	AATATAAATGAGTAAAACGA+CGG	+	chr7.1:3736389-3736408	None:intergenic	20.0%
!!	ATATGAGATTGATTATTGAT+TGG	-	chr7.1:3736601-3736620	MS.gene050946:intron	20.0%
!!	TTCTATAGATAGTAATGAAT+TGG	-	chr7.1:3736573-3736592	MS.gene050946:CDS	20.0%
!!!	TGGATTCTAATTCTAATTTT+AGG	-	chr7.1:3737068-3737087	MS.gene050946:intron	20.0%
!	AAAAATATCTTGTGCATGTT+TGG	-	chr7.1:3736917-3736936	MS.gene050946:intron	25.0%
!	ATTAAAAAAGGCAAAGCAAA+TGG	+	chr7.1:3736872-3736891	None:intergenic	25.0%
!	CAAAATTTGTGTTATAATGC+AGG	-	chr7.1:3737093-3737112	MS.gene050946:intron	25.0%
!	TTAAAAAAGGCAAAGCAAAT+GGG	+	chr7.1:3736871-3736890	None:intergenic	25.0%
!	TTGTTGAATTTGAAAAGAGA+TGG	-	chr7.1:3736448-3736467	MS.gene050946:intron	25.0%
!!!	GTTCTAATTGTTTCCTTTTT+TGG	-	chr7.1:3737184-3737203	MS.gene050946:CDS	25.0%
!!!	TGGTATTTTCTGGTTATTTA+GGG	-	chr7.1:3737281-3737300	MS.gene050946:intron	25.0%
!!!	TTGATTGGTTTTAATGTTGT+TGG	-	chr7.1:3736616-3736635	MS.gene050946:intron	25.0%
!!!	TTGGTATTTTCTGGTTATTT+AGG	-	chr7.1:3737280-3737299	MS.gene050946:intron	25.0%
	AAGAAGAAATGTTACGAACT+TGG	+	chr7.1:3736717-3736736	None:intergenic	30.0%
	ACAAGACGAGAAAAACAATA+GGG	+	chr7.1:3736828-3736847	None:intergenic	30.0%
	AGTTAGGTGCATTTGAATAT+TGG	-	chr7.1:3737048-3737067	MS.gene050946:intron	30.0%
	CAAAGATGAGGTATACTATT+GGG	-	chr7.1:3737162-3737181	MS.gene050946:CDS	30.0%
	GATGAATAATGTCAAAGATG+AGG	-	chr7.1:3737150-3737169	MS.gene050946:intron	30.0%
	TCAAAGATGAGGTATACTAT+TGG	-	chr7.1:3737161-3737180	MS.gene050946:CDS	30.0%
!	AAACACGTGATTTTGTTGAA+AGG	-	chr7.1:3736949-3736968	MS.gene050946:intron	30.0%
!	CAAATTCAAGAAGCATATTC+AGG	-	chr7.1:3736531-3736550	MS.gene050946:intron	30.0%
!!	ATGTATTGTTGATGATGTGA+TGG	-	chr7.1:3737251-3737270	MS.gene050946:intron	30.0%
!!	TGTATTGTTGATGATGTGAT+GGG	-	chr7.1:3737252-3737271	MS.gene050946:intron	30.0%
!!!	GGTATTTTCTGGTTATTTAG+GGG	-	chr7.1:3737282-3737301	MS.gene050946:intron	30.0%
!!!	GTATTTTCTGGTTATTTAGG+GGG	-	chr7.1:3737283-3737302	MS.gene050946:intron	30.0%
!!!	GTTTTACCTCGTTTTGTTTA+CGG	+	chr7.1:3736781-3736800	None:intergenic	30.0%
	AAAAGATCAATGTACGATGC+TGG	-	chr7.1:3736664-3736683	MS.gene050946:intron	35.0%
	ACAAAATCACGTGTTTACAG+TGG	+	chr7.1:3736945-3736964	None:intergenic	35.0%
	ATGGGAATCATGTATGTTAC+CGG	+	chr7.1:3736853-3736872	None:intergenic	35.0%
	CACAAGACGAGAAAAACAAT+AGG	+	chr7.1:3736829-3736848	None:intergenic	35.0%
	GATTTCGAGCGAATTTATCA+GGG	+	chr7.1:3736476-3736495	None:intergenic	35.0%
	TGATTTGAACCAAGATCAGA+CGG	-	chr7.1:3737367-3737386	MS.gene050946:CDS	35.0%
!	ACAAAGGATGTTTGTTGAGA+TGG	-	chr7.1:3737322-3737341	MS.gene050946:intron	35.0%
!	ATTTTGCCGTAAACAAAACG+AGG	-	chr7.1:3736772-3736791	MS.gene050946:intron	35.0%
!!	GTATTGTTGATGATGTGATG+GGG	-	chr7.1:3737253-3737272	MS.gene050946:intron	35.0%
!!	TCTTGCTATTACTCTGTTCT+TGG	-	chr7.1:3736298-3736317	MS.gene050946:CDS	35.0%
!!!	TGGGGTATTTTGGTATTTTC+TGG	-	chr7.1:3737271-3737290	MS.gene050946:intron	35.0%
	ACAGTTTGGAGGATCTACAA+AGG	-	chr7.1:3737306-3737325	MS.gene050946:intron	40.0%
	AGAAAAACAATAGGGTCGTC+TGG	+	chr7.1:3736820-3736839	None:intergenic	40.0%
	GGATTTCGAGCGAATTTATC+AGG	+	chr7.1:3736477-3736496	None:intergenic	40.0%
!	ACTTGGTCTTCTTCTTCAAG+AGG	+	chr7.1:3736700-3736719	None:intergenic	40.0%
!	AGGATGTTTGTTGAGATGGT+AGG	-	chr7.1:3737326-3737345	MS.gene050946:intron	40.0%
!	ATGTTTGTTGAGATGGTAGG+TGG	-	chr7.1:3737329-3737348	MS.gene050946:intron	40.0%
!	TGTTTTTCTCGTCTTGTGTC+CGG	-	chr7.1:3736831-3736850	MS.gene050946:intron	40.0%
!!	AATTTGCTGAAACCGTCGTT+TGG	+	chr7.1:3736517-3736536	None:intergenic	40.0%
!!	GATGATGTGATGGGGTATTT+TGG	-	chr7.1:3737261-3737280	MS.gene050946:intron	40.0%
!!!	GAGGTAAAACTGTGTCGTTT+TGG	-	chr7.1:3736791-3736810	MS.gene050946:intron	40.0%
	AGAAGATCTACTACCACCGT+TGG	+	chr7.1:3736281-3736300	None:intergenic	45.0%
	CGTTTACCATAGCGAGTTTG+CGG	+	chr7.1:3736366-3736385	None:intergenic	45.0%
	CTTGTAGTGCAGCTCAAGTT+AGG	-	chr7.1:3737032-3737051	MS.gene050946:CDS	45.0%
	GGTTATTTAGGGGGACAGTT+TGG	-	chr7.1:3737292-3737311	MS.gene050946:intron	45.0%
	GTAAGCAGTGCGAATATCAG+AGG	+	chr7.1:3736344-3736363	None:intergenic	45.0%
	TATTTAGGGGGACAGTTTGG+AGG	-	chr7.1:3737295-3737314	MS.gene050946:intron	45.0%
	TCGTTTCAGTTGCAGAGCAT+GGG	-	chr7.1:3736738-3736757	MS.gene050946:intron	45.0%
	TTCGTTTCAGTTGCAGAGCA+TGG	-	chr7.1:3736737-3736756	MS.gene050946:intron	45.0%
	AGCAGTGCGAATATCAGAGG+AGG	+	chr7.1:3736341-3736360	None:intergenic	50.0%
	AGTGCGAATATCAGAGGAGG+AGG	+	chr7.1:3736338-3736357	None:intergenic	50.0%
	CAAGAAGGAGGAGGATCCAA+CGG	-	chr7.1:3736262-3736281	MS.gene050946:CDS	50.0%
	CGTTTCAGTTGCAGAGCATG+GGG	-	chr7.1:3736739-3736758	MS.gene050946:intron	50.0%
	GCTCGAAATCCTACAACTGC+CGG	-	chr7.1:3736486-3736505	MS.gene050946:intron	50.0%
	GTTGAGATGGTAGGTGGAGA+TGG	-	chr7.1:3737335-3737354	MS.gene050946:CDS	50.0%
	TGAACCAAGATCAGACGGCT+GGG	-	chr7.1:3737372-3737391	MS.gene050946:CDS	50.0%
	TGCTTACCGCAAACTCGCTA+TGG	-	chr7.1:3736357-3736376	MS.gene050946:CDS	50.0%
	TTGAACCAAGATCAGACGGC+TGG	-	chr7.1:3737371-3737390	MS.gene050946:CDS	50.0%
!	AAACCGTCGTTTGGCTTCTC+CGG	+	chr7.1:3736508-3736527	None:intergenic	50.0%
	GGACGCTCAAGTGGATCAAG+AGG	-	chr7.1:3737401-3737420	MS.gene050946:CDS	55.0%
	TCTTCCCAGCCGTCTGATCT+TGG	+	chr7.1:3737379-3737398	None:intergenic	55.0%
	TTGGCTTCTCCGGCAGTTGT+AGG	+	chr7.1:3736498-3736517	None:intergenic	55.0%
	CTGCCGGAGAAGCCAAACGA+CGG	-	chr7.1:3736502-3736521	MS.gene050946:intron	60.0%
	GAAGGAGGAGGATCCAACGG+TGG	-	chr7.1:3736265-3736284	MS.gene050946:CDS	60.0%
	GATCAGACGGCTGGGAAGAG+AGG	-	chr7.1:3737380-3737399	MS.gene050946:CDS	60.0%
	GCGGCAATGATTGCTGCGCT+TGG	+	chr7.1:3737435-3737454	None:intergenic	60.0%
	GGGAAGAGAGGACGCTCAAG+TGG	-	chr7.1:3737392-3737411	MS.gene050946:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	3736256	3737457	3736256	ID=MS.gene050946
chr7.1	mRNA	3736256	3737457	3736256	ID=MS.gene050946.t1;Parent=MS.gene050946
chr7.1	exon	3737335	3737457	3737335	ID=MS.gene050946.t1.exon1;Parent=MS.gene050946.t1
chr7.1	CDS	3737335	3737457	3737335	ID=cds.MS.gene050946.t1;Parent=MS.gene050946.t1
chr7.1	exon	3737161	3737248	3737161	ID=MS.gene050946.t1.exon2;Parent=MS.gene050946.t1
chr7.1	CDS	3737161	3737248	3737161	ID=cds.MS.gene050946.t1;Parent=MS.gene050946.t1
chr7.1	exon	3736996	3737066	3736996	ID=MS.gene050946.t1.exon3;Parent=MS.gene050946.t1
chr7.1	CDS	3736996	3737066	3736996	ID=cds.MS.gene050946.t1;Parent=MS.gene050946.t1
chr7.1	exon	3736542	3736598	3736542	ID=MS.gene050946.t1.exon4;Parent=MS.gene050946.t1
chr7.1	CDS	3736542	3736598	3736542	ID=cds.MS.gene050946.t1;Parent=MS.gene050946.t1
chr7.1	exon	3736256	3736411	3736256	ID=MS.gene050946.t1.exon5;Parent=MS.gene050946.t1
chr7.1	CDS	3736256	3736411	3736256	ID=cds.MS.gene050946.t1;Parent=MS.gene050946.t1

Gene Sequence

>MS.gene050946

ATGGATCAAGAAGGAGGAGGATCCAACGGTGGTAGTAGATCTTCTTGCTATTACTCTGTTCTTGGTATTCGCAGTGATGCCTCCTCCTCTGATATTCGCACTGCTTACCGCAAACTCGCTATGGTAAACGCCGTCGTTTTACTCATTTATATTATTATATATTCACTTTAAATAAATAAATAATTAAATTTATTGTTGAATTTGAAAAGAGATGGCACCCTGATAAATTCGCTCGAAATCCTACAACTGCCGGAGAAGCCAAACGACGGTTTCAGCAAATTCAAGAAGCATATTCAGGTTTGTTTCAAATTCAAATTTTCTATAGATAGTAATGAATTGGATTTGATATGAGATTGATTATTGATTGGTTTTAATGTTGTTGGTGAAATAGTTCTCTCTGACGATTCTAAAAGATCAATGTACGATGCTGGACTATACGATCCTCTTGAAGAAGAAGACCAAGTTCGTAACATTTCTTCTTTTCGTTTCAGTTGCAGAGCATGGGGCAAAGATTAGATTTTGCCGTAAACAAAACGAGGTAAAACTGTGTCGTTTTGGTTACCAGACGACCCTATTGTTTTTCTCGTCTTGTGTCCGGTAACATACATGATTCCCATTTGCTTTGCCTTTTTTAATTTTTATTTTAATCTTTTTCTTTAAAAAAAATATCTTGTGCATGTTTGGAACCACTGTAAACACGTGATTTTGTTGAAAGGTCTGTAAAATCAATTGTTTTGTGATTCTATCAAATTTACTGTGAAACAAACATGCACTCACTTGTAGTGCAGCTCAAGTTAGGTGCATTTGAATATTGGATTCTAATTCTAATTTTAGGAACAAAATTTGTGTTATAATGCAGGAATTTTGTGATTTTATGAGCGAAATGATCTCAATGATGAATAATGTCAAAGATGAGGTATACTATTGGGTTCTAATTGTTTCCTTTTTTGGTAAAAAAAATGAAGGAGAAAATAGTAAATTTAAAAAATAGATTGATGTATTGTTGATGATGTGATGGGGTATTTTGGTATTTTCTGGTTATTTAGGGGGACAGTTTGGAGGATCTACAAAGGATGTTTGTTGAGATGGTAGGTGGAGATGGTATGAACTTTGATTTGAACCAAGATCAGACGGCTGGGAAGAGAGGACGCTCAAGTGGATCAAGAGGCAACGCAGCCAAGCGCAGCAATCATTGCCGCTAG

Protein sequence

>MS.gene050946.t1

MDQEGGGSNGGSRSSCYYSVLGIRSDASSSDIRTAYRKLAMRWHPDKFARNPTTAGEAKRRFQQIQEAYSVLSDDSKRSMYDAGLYDPLEEEDQEFCDFMSEMISMMNNVKDEGDSLEDLQRMFVEMVGGDGMNFDLNQDQTAGKRGRSSGSRGNAAKRSNHCR