Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72734.t1 | XP_003612482.1 | 94.1 | 135 | 7 | 1 | 1 | 135 | 1 | 134 | 4.00E-41 | 177.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72734.t1 | Q08747 | 48.6 | 74 | 36 | 2 | 60 | 133 | 124 | 195 | 2.6e-12 | 73.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72734.t1 | G7K408 | 94.1 | 135 | 7 | 1 | 1 | 135 | 1 | 134 | 2.9e-41 | 177.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene72734.t1 | TR | SWI/SNF-BAF60b |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056631 | MS.gene72734 | 0.812175 | 4.84E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene72734 | 0.809697 | 1.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72734 | MS.gene73121 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72734.t1 | MTR_5g025500 | 96.296 | 135 | 4 | 1 | 1 | 135 | 1 | 134 | 3.83e-89 | 255 |
| MS.gene72734.t1 | MTR_5g005200 | 47.436 | 78 | 41 | 0 | 55 | 132 | 65 | 142 | 1.02e-23 | 89.7 |
| MS.gene72734.t1 | MTR_5g018010 | 43.529 | 85 | 46 | 2 | 52 | 135 | 183 | 266 | 8.03e-19 | 79.7 |
| MS.gene72734.t1 | MTR_5g018010 | 42.466 | 73 | 41 | 1 | 58 | 130 | 57 | 128 | 1.37e-17 | 76.6 |
| MS.gene72734.t1 | MTR_5g018010 | 43.529 | 85 | 46 | 2 | 52 | 135 | 260 | 343 | 1.30e-18 | 80.1 |
| MS.gene72734.t1 | MTR_5g018010 | 42.466 | 73 | 41 | 1 | 58 | 130 | 134 | 205 | 1.82e-17 | 77.0 |
| MS.gene72734.t1 | MTR_3g055330 | 38.384 | 99 | 60 | 1 | 34 | 132 | 138 | 235 | 2.90e-18 | 79.3 |
| MS.gene72734.t1 | MTR_3g055330 | 38.384 | 99 | 60 | 1 | 34 | 132 | 138 | 235 | 3.17e-18 | 79.0 |
| MS.gene72734.t1 | MTR_5g025520 | 39.130 | 69 | 42 | 0 | 63 | 131 | 34 | 102 | 3.46e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72734.t1 | AT2G35605 | 55.303 | 132 | 35 | 3 | 4 | 135 | 2 | 109 | 2.47e-39 | 128 |
| MS.gene72734.t1 | AT1G31760 | 61.616 | 99 | 37 | 1 | 37 | 134 | 13 | 111 | 3.29e-36 | 120 |
| MS.gene72734.t1 | AT3G03590 | 59.259 | 81 | 33 | 0 | 55 | 135 | 63 | 143 | 1.69e-31 | 109 |
| MS.gene72734.t1 | AT2G14880 | 43.860 | 114 | 60 | 1 | 19 | 132 | 32 | 141 | 4.55e-30 | 105 |
| MS.gene72734.t1 | AT4G34290 | 47.674 | 86 | 45 | 0 | 47 | 132 | 59 | 144 | 2.01e-28 | 102 |
| MS.gene72734.t1 | AT3G48600 | 47.475 | 99 | 48 | 2 | 37 | 131 | 13 | 111 | 2.63e-23 | 89.7 |
| MS.gene72734.t1 | AT3G48600 | 47.475 | 99 | 48 | 2 | 37 | 131 | 13 | 111 | 9.25e-23 | 89.7 |
| MS.gene72734.t1 | AT4G26810 | 39.362 | 94 | 55 | 1 | 44 | 135 | 6 | 99 | 6.75e-19 | 76.6 |
| MS.gene72734.t1 | AT4G26810 | 39.362 | 94 | 55 | 1 | 44 | 135 | 6 | 99 | 6.75e-19 | 76.6 |
| MS.gene72734.t1 | AT4G22360 | 39.252 | 107 | 61 | 2 | 29 | 132 | 167 | 272 | 2.18e-18 | 80.1 |
| MS.gene72734.t1 | AT4G22360 | 36.585 | 82 | 49 | 2 | 56 | 135 | 305 | 385 | 8.83e-11 | 58.5 |
| MS.gene72734.t1 | AT1G49520 | 42.308 | 78 | 44 | 1 | 54 | 131 | 249 | 325 | 3.47e-15 | 70.9 |
| MS.gene72734.t1 | AT1G49520 | 38.462 | 78 | 47 | 1 | 54 | 131 | 100 | 176 | 2.74e-14 | 68.6 |
| MS.gene72734.t1 | AT3G19080 | 48.387 | 62 | 32 | 0 | 51 | 112 | 259 | 320 | 1.76e-14 | 69.3 |
| MS.gene72734.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 4.28e-12 | 62.4 |
| MS.gene72734.t1 | AT3G19080 | 48.387 | 62 | 32 | 0 | 51 | 112 | 259 | 320 | 2.68e-14 | 68.6 |
| MS.gene72734.t1 | AT3G19080 | 40.260 | 77 | 43 | 2 | 60 | 134 | 385 | 460 | 8.50e-13 | 64.3 |
| MS.gene72734.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 6.30e-12 | 62.0 |
| MS.gene72734.t1 | AT3G19080 | 48.387 | 62 | 32 | 0 | 51 | 112 | 259 | 320 | 2.71e-14 | 68.6 |
| MS.gene72734.t1 | AT3G19080 | 40.260 | 77 | 43 | 2 | 60 | 134 | 387 | 462 | 8.59e-13 | 64.3 |
| MS.gene72734.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 6.37e-12 | 62.0 |
| MS.gene72734.t1 | AT3G19080 | 48.387 | 62 | 32 | 0 | 51 | 112 | 259 | 320 | 2.71e-14 | 68.6 |
| MS.gene72734.t1 | AT3G19080 | 40.260 | 77 | 43 | 2 | 60 | 134 | 387 | 462 | 8.59e-13 | 64.3 |
| MS.gene72734.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 6.37e-12 | 62.0 |
Find 38 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATCTCCTTCTTGTTATT+AGG | 0.242982 | 5.4:+16590697 | None:intergenic |
| CTGAAGCTGTTAAGAAAGTT+TGG | 0.251130 | 5.4:-16591897 | MS.gene72734:CDS |
| TTTATCTTTCCCATCGAAAA+TGG | 0.302387 | 5.4:+16590654 | None:intergenic |
| TTGGTGCGCCTGAAGTTTCT+AGG | 0.344233 | 5.4:-16591921 | MS.gene72734:CDS |
| TTCAGCTTGATTTCACGAAA+TGG | 0.371326 | 5.4:+16590596 | None:intergenic |
| TATCAAGCTGCAGAATCTTC+AGG | 0.384496 | 5.4:-16591869 | MS.gene72734:intron |
| TCTGAGCTCGGTAATTTCAT+TGG | 0.417141 | 5.4:-16591940 | MS.gene72734:CDS |
| GAAATGGGTAGCTAGCAATT+TGG | 0.423194 | 5.4:+16590612 | None:intergenic |
| AACGGTTGTGGATGCAGCTC+CGG | 0.431822 | 5.4:+16592038 | None:intergenic |
| AAGAAGGCGGCTGCATCCGC+CGG | 0.443418 | 5.4:-16592057 | MS.gene72734:CDS |
| TGAAGCTGTTAAGAAAGTTT+GGG | 0.446267 | 5.4:-16591896 | MS.gene72734:CDS |
| ATTCGCCGGCAGAATGTTGA+TGG | 0.447466 | 5.4:-16592103 | MS.gene72734:CDS |
| CAGAATGTTGATGGCGGCGG+CGG | 0.455072 | 5.4:-16592094 | MS.gene72734:CDS |
| GCTTCAGTCCTAGAAACTTC+AGG | 0.456584 | 5.4:+16591913 | None:intergenic |
| AGGGATACAGAAGGTAGTTC+CGG | 0.456709 | 5.4:-16591968 | MS.gene72734:CDS |
| TCAGCTTGATTTCACGAAAT+GGG | 0.467447 | 5.4:+16590597 | None:intergenic |
| AGCTAGCAATTTGGCAATCT+CGG | 0.474611 | 5.4:+16590621 | None:intergenic |
| GAAAACCGCCGTGAAGAAAA+CGG | 0.496369 | 5.4:-16592010 | MS.gene72734:CDS |
| GGCGAAAGGAGCGACGAAGA+AGG | 0.499897 | 5.4:-16592073 | MS.gene72734:CDS |
| TTGATGGCGGCGGCGGCGAA+AGG | 0.509434 | 5.4:-16592087 | MS.gene72734:CDS |
| GAAGAAAACGGTTACGAGCA+AGG | 0.515768 | 5.4:-16591998 | MS.gene72734:CDS |
| TCGCGATCATGGCACCAGCT+AGG | 0.520628 | 5.4:-16592137 | None:intergenic |
| CGCCGCCATCAACATTCTGC+CGG | 0.523178 | 5.4:+16592098 | None:intergenic |
| CGGCAGAATGTTGATGGCGG+CGG | 0.524245 | 5.4:-16592097 | MS.gene72734:CDS |
| GCAGAATCCTAATAACAAGA+AGG | 0.524697 | 5.4:-16590704 | MS.gene72734:intron |
| GTTCCGGTCACTTCTGAGCT+CGG | 0.533521 | 5.4:-16591952 | MS.gene72734:CDS |
| ACGGTTACGAGCAAGGGTAC+CGG | 0.543319 | 5.4:-16591991 | MS.gene72734:CDS |
| AATGCTCCGAAAACCCTAGC+TGG | 0.551067 | 5.4:+16592123 | None:intergenic |
| TTTCGATGGGAAAGATAAAG+TGG | 0.555020 | 5.4:-16590650 | MS.gene72734:CDS |
| AACTACCTTCTGTATCCCTC+CGG | 0.556811 | 5.4:+16591972 | None:intergenic |
| AAGAAAACGGTTACGAGCAA+GGG | 0.571769 | 5.4:-16591997 | MS.gene72734:CDS |
| GGTTGTGGATGCAGCTCCGG+CGG | 0.578916 | 5.4:+16592041 | None:intergenic |
| GAAAGGAGCGACGAAGAAGG+CGG | 0.604773 | 5.4:-16592070 | MS.gene72734:CDS |
| TTACCGAGCTCAGAAGTGAC+CGG | 0.624475 | 5.4:+16591949 | None:intergenic |
| CGCCGGCAGAATGTTGATGG+CGG | 0.627515 | 5.4:-16592100 | MS.gene72734:CDS |
| GTTACGAGCAAGGGTACCGG+AGG | 0.664192 | 5.4:-16591988 | MS.gene72734:CDS |
| GGGTACCGGAGGGATACAGA+AGG | 0.705233 | 5.4:-16591977 | MS.gene72734:CDS |
| TTACGAGCAAGGGTACCGGA+GGG | 0.744071 | 5.4:-16591987 | MS.gene72734:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGTTTATTTAAAAGAAA+AGG | - | chr5.4:16591446-16591465 | MS.gene72734:intron | 10.0% |
| !!! | TCATTTTCTTAAATTAATAT+CGG | - | chr5.4:16591369-16591388 | MS.gene72734:intron | 10.0% |
| !!! | ATGTAATAATAGTTTGAAAT+CGG | - | chr5.4:16591510-16591529 | MS.gene72734:intron | 15.0% |
| !! | AAGCTAAGGATATTATTTAT+AGG | + | chr5.4:16591701-16591720 | None:intergenic | 20.0% |
| !! | ATAACTAATGTAATCATTGT+TGG | - | chr5.4:16591759-16591778 | MS.gene72734:intron | 20.0% |
| !! | TTTGTTCTGTTATTAAATTG+TGG | - | chr5.4:16591858-16591877 | MS.gene72734:intron | 20.0% |
| !!! | ATTGTATTTTTGTCTCTTTT+TGG | - | chr5.4:16591959-16591978 | MS.gene72734:CDS | 20.0% |
| !!! | CAATTTTGATTAGTACTAAA+TGG | - | chr5.4:16591644-16591663 | MS.gene72734:intron | 20.0% |
| ! | AAGAGACAAAAATACAATAC+AGG | + | chr5.4:16591957-16591976 | None:intergenic | 25.0% |
| ! | ATTTAAGAAAGAGAAAAGGA+TGG | + | chr5.4:16591832-16591851 | None:intergenic | 25.0% |
| ! | GACAATTTAAGAAAGAGAAA+AGG | + | chr5.4:16591836-16591855 | None:intergenic | 25.0% |
| !! | AAAACTTTGATCAGGTTTTA+TGG | - | chr5.4:16590978-16590997 | MS.gene72734:intron | 25.0% |
| !!! | TTATTTTGCGCTATTTGATT+TGG | - | chr5.4:16591003-16591022 | MS.gene72734:intron | 25.0% |
| AAACAAACATCTCAAAGCTA+AGG | + | chr5.4:16591715-16591734 | None:intergenic | 30.0% | |
| AGACAAAAATACAATACAGG+AGG | + | chr5.4:16591954-16591973 | None:intergenic | 30.0% | |
| CTGAATGAAAAACTTTGATC+AGG | - | chr5.4:16590970-16590989 | MS.gene72734:intron | 30.0% | |
| CTGAATGTAATCAAATGTGT+TGG | + | chr5.4:16591344-16591363 | None:intergenic | 30.0% | |
| TGAAGCTGTTAAGAAAGTTT+GGG | - | chr5.4:16590830-16590849 | MS.gene72734:intron | 30.0% | |
| TTTATCTTTCCCATCGAAAA+TGG | + | chr5.4:16592075-16592094 | None:intergenic | 30.0% | |
| TTTCAAAAATCACACGAAAC+AGG | + | chr5.4:16591145-16591164 | None:intergenic | 30.0% | |
| ! | AGTTTCTGTTGTCTGATTTT+TGG | - | chr5.4:16591553-16591572 | MS.gene72734:intron | 30.0% |
| ! | TGGTTATGATTTTCTTAAGC+AGG | - | chr5.4:16591664-16591683 | MS.gene72734:intron | 30.0% |
| !! | AAGATCTCCTTCTTGTTATT+AGG | + | chr5.4:16592032-16592051 | None:intergenic | 30.0% |
| !! | ATTGTTTGTTGTAATCGCAA+TGG | - | chr5.4:16591028-16591047 | MS.gene72734:intron | 30.0% |
| !! | ATTTTTGTCTCTTTTTGGTG+TGG | - | chr5.4:16591964-16591983 | MS.gene72734:CDS | 30.0% |
| !! | CTTTGAGATGTTTGTTTCTT+TGG | - | chr5.4:16591718-16591737 | MS.gene72734:intron | 30.0% |
| !!! | AATCGCAATGGTTTGTTTTA+GGG | - | chr5.4:16591040-16591059 | MS.gene72734:intron | 30.0% |
| !!! | TAATCGCAATGGTTTGTTTT+AGG | - | chr5.4:16591039-16591058 | MS.gene72734:intron | 30.0% |
| !!! | TTTTTTTCTGCTGTTCATAC+TGG | - | chr5.4:16591784-16591803 | MS.gene72734:intron | 30.0% |
| CTGAAGCTGTTAAGAAAGTT+TGG | - | chr5.4:16590829-16590848 | MS.gene72734:intron | 35.0% | |
| GCAGAATCCTAATAACAAGA+AGG | - | chr5.4:16592022-16592041 | MS.gene72734:CDS | 35.0% | |
| TCAGCTTGATTTCACGAAAT+GGG | + | chr5.4:16592132-16592151 | None:intergenic | 35.0% | |
| TCTGATGTTTGTGTTTGTGT+TGG | - | chr5.4:16591405-16591424 | MS.gene72734:intron | 35.0% | |
| TTTCGATGGGAAAGATAAAG+TGG | - | chr5.4:16592076-16592095 | MS.gene72734:CDS | 35.0% | |
| ! | AAACTGAAGACCATTTTCGA+TGG | - | chr5.4:16592062-16592081 | MS.gene72734:CDS | 35.0% |
| ! | AACTGAAGACCATTTTCGAT+GGG | - | chr5.4:16592063-16592082 | MS.gene72734:CDS | 35.0% |
| ! | TTATTGTTGTTGCGTTCATG+AGG | - | chr5.4:16591093-16591112 | MS.gene72734:intron | 35.0% |
| !! | TTCTGTTGTCTGATTTTTGG+AGG | - | chr5.4:16591556-16591575 | MS.gene72734:intron | 35.0% |
| AAGAAAACGGTTACGAGCAA+GGG | - | chr5.4:16590729-16590748 | MS.gene72734:intron | 40.0% | |
| AGCTAGCAATTTGGCAATCT+CGG | + | chr5.4:16592108-16592127 | None:intergenic | 40.0% | |
| ATCCAAGACAAACTATCCTG+CGG | + | chr5.4:16591919-16591938 | None:intergenic | 40.0% | |
| CACTTGACACTTCTGATTGA+AGG | - | chr5.4:16591278-16591297 | MS.gene72734:intron | 40.0% | |
| GAAATGGGTAGCTAGCAATT+TGG | + | chr5.4:16592117-16592136 | None:intergenic | 40.0% | |
| TATCAAGCTGCAGAATCTTC+AGG | - | chr5.4:16590857-16590876 | MS.gene72734:intron | 40.0% | |
| TCTGAGCTCGGTAATTTCAT+TGG | - | chr5.4:16590786-16590805 | MS.gene72734:intron | 40.0% | |
| TGGTGTGGCTGTTTACATAA+TGG | - | chr5.4:16591979-16591998 | MS.gene72734:CDS | 40.0% | |
| TTTCTTTGCGATGTTGCATC+TGG | - | chr5.4:16591210-16591229 | MS.gene72734:intron | 40.0% | |
| !! | AGAAGTGTCAAGTGTTATCG+AGG | + | chr5.4:16591272-16591291 | None:intergenic | 40.0% |
| !! | CAAATGTGTTGGTGTCATGT+CGG | + | chr5.4:16591333-16591352 | None:intergenic | 40.0% |
| !! | CAAGTTTGAGTTGTGCTATC+TGG | - | chr5.4:16591582-16591601 | MS.gene72734:intron | 40.0% |
| AAACTCTAGCCATCGCAACA+TGG | + | chr5.4:16591538-16591557 | None:intergenic | 45.0% | |
| AACTACCTTCTGTATCCCTC+CGG | + | chr5.4:16590757-16590776 | None:intergenic | 45.0% | |
| AGGGATACAGAAGGTAGTTC+CGG | - | chr5.4:16590758-16590777 | MS.gene72734:intron | 45.0% | |
| GAAAACCGCCGTGAAGAAAA+CGG | - | chr5.4:16590716-16590735 | MS.gene72734:intron | 45.0% | |
| GAAGAAAACGGTTACGAGCA+AGG | - | chr5.4:16590728-16590747 | MS.gene72734:intron | 45.0% | |
| GCTTCAGTCCTAGAAACTTC+AGG | + | chr5.4:16590816-16590835 | None:intergenic | 45.0% | |
| GTATATTGCTTAACAGCCGC+AGG | - | chr5.4:16591900-16591919 | MS.gene72734:CDS | 45.0% | |
| TAACCATCTCACCATCGCAA+GGG | + | chr5.4:16591624-16591643 | None:intergenic | 45.0% | |
| ! | GCTCGTAACCGTTTTCTTCA+CGG | + | chr5.4:16590727-16590746 | None:intergenic | 45.0% |
| ! | GGTTTTCTTCACAACGGTTG+TGG | + | chr5.4:16590703-16590722 | None:intergenic | 45.0% |
| !! | TGTTTGTGTTGGTGCTGCAT+AGG | - | chr5.4:16591416-16591435 | MS.gene72734:intron | 45.0% |
| AAATCGGAGCCATGTTGCGA+TGG | - | chr5.4:16591526-16591545 | MS.gene72734:intron | 50.0% | |
| AATGCTCCGAAAACCCTAGC+TGG | + | chr5.4:16590606-16590625 | None:intergenic | 50.0% | |
| ACCATCGCAAGGGCTTCAAA+AGG | + | chr5.4:16591614-16591633 | None:intergenic | 50.0% | |
| ATTCGCCGGCAGAATGTTGA+TGG | - | chr5.4:16590623-16590642 | MS.gene72734:CDS | 50.0% | |
| CCATCGCAAGGGCTTCAAAA+GGG | + | chr5.4:16591613-16591632 | None:intergenic | 50.0% | |
| GTAACCATCTCACCATCGCA+AGG | + | chr5.4:16591625-16591644 | None:intergenic | 50.0% | |
| TTACCGAGCTCAGAAGTGAC+CGG | + | chr5.4:16590780-16590799 | None:intergenic | 50.0% | |
| TTGGTGCGCCTGAAGTTTCT+AGG | - | chr5.4:16590805-16590824 | MS.gene72734:intron | 50.0% | |
| ! | AGCCGCAGGATAGTTTGTCT+TGG | - | chr5.4:16591914-16591933 | MS.gene72734:CDS | 50.0% |
| ! | ATGGCACCAGCTAGGGTTTT+CGG | - | chr5.4:16590597-16590616 | MS.gene72734:CDS | 50.0% |
| ! | CACGGCGGTTTTCTTCACAA+CGG | + | chr5.4:16590709-16590728 | None:intergenic | 50.0% |
| ! | CGTAACCGTTTTCTTCACGG+CGG | + | chr5.4:16590724-16590743 | None:intergenic | 50.0% |
| ! | TTGAAGGTGTGTCCATCGTC+CGG | - | chr5.4:16591294-16591313 | MS.gene72734:intron | 50.0% |
| !! | TGTCGGTGTCAAACACATGC+CGG | + | chr5.4:16591316-16591335 | None:intergenic | 50.0% |
| AACGGTTGTGGATGCAGCTC+CGG | + | chr5.4:16590691-16590710 | None:intergenic | 55.0% | |
| AAGCCCTTGCGATGGTGAGA+TGG | - | chr5.4:16591618-16591637 | MS.gene72734:intron | 55.0% | |
| GAAAGGAGCGACGAAGAAGG+CGG | - | chr5.4:16590656-16590675 | MS.gene72734:CDS | 55.0% | |
| GTCAAACACATGCCGGACGA+TGG | + | chr5.4:16591309-16591328 | None:intergenic | 55.0% | |
| GTTCCGGTCACTTCTGAGCT+CGG | - | chr5.4:16590774-16590793 | MS.gene72734:intron | 55.0% | |
| ! | ACGGTTACGAGCAAGGGTAC+CGG | - | chr5.4:16590735-16590754 | MS.gene72734:intron | 55.0% |
| !! | AGGGTTTTCGGAGCATTCGC+CGG | - | chr5.4:16590609-16590628 | MS.gene72734:CDS | 55.0% |
| !! | TTACGAGCAAGGGTACCGGA+GGG | - | chr5.4:16590739-16590758 | MS.gene72734:intron | 55.0% |
| !!! | CCCTTTTGAAGCCCTTGCGA+TGG | - | chr5.4:16591610-16591629 | MS.gene72734:intron | 55.0% |
| CGCCGCCATCAACATTCTGC+CGG | + | chr5.4:16590631-16590650 | None:intergenic | 60.0% | |
| GGCGAAAGGAGCGACGAAGA+AGG | - | chr5.4:16590653-16590672 | MS.gene72734:CDS | 60.0% | |
| ! | CGCCGGCAGAATGTTGATGG+CGG | - | chr5.4:16590626-16590645 | MS.gene72734:CDS | 60.0% |
| !! | CAGAATGTTGATGGCGGCGG+CGG | - | chr5.4:16590632-16590651 | MS.gene72734:CDS | 60.0% |
| !! | CGGCAGAATGTTGATGGCGG+CGG | - | chr5.4:16590629-16590648 | MS.gene72734:CDS | 60.0% |
| !! | GGGTACCGGAGGGATACAGA+AGG | - | chr5.4:16590749-16590768 | MS.gene72734:intron | 60.0% |
| !! | GTTACGAGCAAGGGTACCGG+AGG | - | chr5.4:16590738-16590757 | MS.gene72734:intron | 60.0% |
| AAGAAGGCGGCTGCATCCGC+CGG | - | chr5.4:16590669-16590688 | MS.gene72734:CDS | 65.0% | |
| GGTTGTGGATGCAGCTCCGG+CGG | + | chr5.4:16590688-16590707 | None:intergenic | 65.0% | |
| !! | TTGATGGCGGCGGCGGCGAA+AGG | - | chr5.4:16590639-16590658 | MS.gene72734:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 16590597 | 16592151 | 16590597 | ID=MS.gene72734 |
| chr5.4 | mRNA | 16590597 | 16592151 | 16590597 | ID=MS.gene72734.t1;Parent=MS.gene72734 |
| chr5.4 | exon | 16591870 | 16592151 | 16591870 | ID=MS.gene72734.t1.exon1;Parent=MS.gene72734.t1 |
| chr5.4 | CDS | 16591870 | 16592151 | 16591870 | ID=cds.MS.gene72734.t1;Parent=MS.gene72734.t1 |
| chr5.4 | exon | 16590597 | 16590722 | 16590597 | ID=MS.gene72734.t1.exon2;Parent=MS.gene72734.t1 |
| chr5.4 | CDS | 16590597 | 16590722 | 16590597 | ID=cds.MS.gene72734.t1;Parent=MS.gene72734.t1 |
| Gene Sequence |
| Protein sequence |
