Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72782.t1 | XP_024640893.1 | 99.3 | 401 | 3 | 0 | 1 | 401 | 1 | 401 | 8.90E-238 | 832.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72782.t1 | Q6DBP4 | 68.3 | 397 | 124 | 1 | 5 | 401 | 3 | 397 | 1.3e-168 | 594.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72782.t1 | A0A396HMS2 | 99.2 | 391 | 3 | 0 | 1 | 391 | 1 | 391 | 2.0e-231 | 810.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054486 | MS.gene72782 | 0.810341 | 1.21E-50 | -1.69E-46 |
| MS.gene058650 | MS.gene72782 | 0.801714 | 7.91E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72782.t1 | MTR_8g072000 | 70.886 | 395 | 112 | 2 | 1 | 394 | 1 | 393 | 0.0 | 602 |
| MS.gene72782.t1 | MTR_8g072000 | 70.886 | 395 | 112 | 2 | 1 | 394 | 32 | 424 | 0.0 | 601 |
| MS.gene72782.t1 | MTR_8g072010 | 66.497 | 394 | 130 | 1 | 1 | 394 | 1 | 392 | 0.0 | 579 |
| MS.gene72782.t1 | MTR_5g042650 | 69.521 | 397 | 117 | 1 | 1 | 397 | 1 | 393 | 0.0 | 575 |
| MS.gene72782.t1 | MTR_7g110900 | 54.098 | 366 | 166 | 1 | 29 | 394 | 52 | 415 | 3.55e-157 | 449 |
| MS.gene72782.t1 | MTR_7g110900 | 54.247 | 365 | 165 | 1 | 29 | 393 | 52 | 414 | 9.45e-157 | 450 |
| MS.gene72782.t1 | MTR_1g085620 | 54.247 | 365 | 165 | 1 | 29 | 393 | 40 | 402 | 2.54e-155 | 444 |
| MS.gene72782.t1 | MTR_7g111280 | 53.973 | 365 | 166 | 1 | 29 | 393 | 56 | 418 | 2.60e-151 | 434 |
| MS.gene72782.t1 | MTR_4g124320 | 53.699 | 365 | 167 | 1 | 29 | 393 | 58 | 420 | 3.53e-149 | 429 |
| MS.gene72782.t1 | MTR_1g085070 | 52.406 | 374 | 160 | 3 | 22 | 394 | 46 | 402 | 4.86e-147 | 423 |
| MS.gene72782.t1 | MTR_1g101000 | 52.291 | 371 | 174 | 2 | 28 | 395 | 38 | 408 | 3.02e-145 | 419 |
| MS.gene72782.t1 | MTR_1g101000 | 52.291 | 371 | 174 | 2 | 28 | 395 | 38 | 408 | 4.81e-145 | 419 |
| MS.gene72782.t1 | MTR_1g101020 | 51.359 | 368 | 176 | 2 | 28 | 392 | 38 | 405 | 7.00e-142 | 410 |
| MS.gene72782.t1 | MTR_7g060760 | 46.575 | 365 | 191 | 1 | 29 | 393 | 57 | 417 | 7.48e-133 | 387 |
| MS.gene72782.t1 | MTR_1g101000 | 52.836 | 335 | 155 | 2 | 28 | 359 | 38 | 372 | 2.58e-129 | 377 |
| MS.gene72782.t1 | MTR_1g085620 | 52.843 | 299 | 139 | 1 | 95 | 393 | 1 | 297 | 1.56e-122 | 357 |
| MS.gene72782.t1 | MTR_4g124320 | 57.769 | 251 | 104 | 1 | 29 | 279 | 58 | 306 | 5.76e-108 | 321 |
| MS.gene72782.t1 | MTR_7g006750 | 57.025 | 121 | 46 | 1 | 149 | 263 | 440 | 560 | 2.31e-38 | 147 |
| MS.gene72782.t1 | MTR_1g036590 | 53.165 | 79 | 37 | 0 | 213 | 291 | 272 | 350 | 2.99e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72782.t1 | AT4G19420 | 68.262 | 397 | 124 | 1 | 5 | 401 | 3 | 397 | 0.0 | 595 |
| MS.gene72782.t1 | AT4G19420 | 68.262 | 397 | 124 | 1 | 5 | 401 | 3 | 397 | 0.0 | 595 |
| MS.gene72782.t1 | AT4G19420 | 62.731 | 432 | 124 | 2 | 5 | 401 | 3 | 432 | 0.0 | 579 |
| MS.gene72782.t1 | AT4G19410 | 60.428 | 374 | 147 | 1 | 16 | 388 | 11 | 384 | 4.61e-179 | 504 |
| MS.gene72782.t1 | AT5G45280 | 57.292 | 384 | 158 | 3 | 9 | 388 | 3 | 384 | 1.01e-173 | 490 |
| MS.gene72782.t1 | AT4G19410 | 60.224 | 357 | 142 | 0 | 16 | 372 | 11 | 367 | 1.63e-168 | 482 |
| MS.gene72782.t1 | AT5G26670 | 56.011 | 366 | 159 | 1 | 29 | 394 | 53 | 416 | 3.52e-158 | 452 |
| MS.gene72782.t1 | AT3G62060 | 54.933 | 375 | 166 | 2 | 21 | 394 | 47 | 419 | 3.87e-157 | 449 |
| MS.gene72782.t1 | AT3G62060 | 54.667 | 375 | 167 | 2 | 21 | 394 | 47 | 419 | 3.61e-156 | 448 |
| MS.gene72782.t1 | AT3G05910 | 54.918 | 366 | 162 | 2 | 29 | 394 | 53 | 415 | 2.96e-154 | 442 |
| MS.gene72782.t1 | AT2G46930 | 53.005 | 366 | 170 | 1 | 29 | 394 | 53 | 416 | 2.28e-153 | 439 |
| MS.gene72782.t1 | AT1G57590 | 54.098 | 366 | 166 | 1 | 29 | 394 | 80 | 443 | 3.24e-152 | 438 |
| MS.gene72782.t1 | AT5G45280 | 59.672 | 305 | 118 | 2 | 9 | 310 | 3 | 305 | 6.62e-141 | 406 |
| MS.gene72782.t1 | AT5G23870 | 47.236 | 398 | 201 | 5 | 4 | 392 | 5 | 402 | 6.99e-137 | 398 |
| MS.gene72782.t1 | AT5G23870 | 47.236 | 398 | 201 | 5 | 4 | 392 | 5 | 402 | 6.99e-137 | 398 |
| MS.gene72782.t1 | AT5G23870 | 47.236 | 398 | 201 | 5 | 4 | 392 | 5 | 402 | 8.79e-137 | 398 |
| MS.gene72782.t1 | AT5G23870 | 47.236 | 398 | 201 | 5 | 4 | 392 | 5 | 402 | 1.17e-136 | 398 |
| MS.gene72782.t1 | AT1G09550 | 50.872 | 344 | 166 | 2 | 29 | 372 | 42 | 382 | 1.39e-132 | 386 |
| MS.gene72782.t1 | AT3G09410 | 47.814 | 366 | 190 | 1 | 29 | 393 | 61 | 426 | 1.63e-132 | 387 |
| MS.gene72782.t1 | AT4G19420 | 70.204 | 245 | 71 | 1 | 5 | 249 | 3 | 245 | 5.42e-129 | 373 |
| MS.gene72782.t1 | AT5G26670 | 55.000 | 300 | 133 | 1 | 95 | 394 | 1 | 298 | 3.66e-125 | 363 |
| MS.gene72782.t1 | AT5G26670 | 55.000 | 300 | 133 | 1 | 95 | 394 | 1 | 298 | 3.66e-125 | 363 |
| MS.gene72782.t1 | AT5G26670 | 55.000 | 300 | 133 | 1 | 95 | 394 | 1 | 298 | 3.66e-125 | 363 |
| MS.gene72782.t1 | AT3G09405 | 44.321 | 361 | 198 | 2 | 29 | 388 | 51 | 409 | 3.48e-117 | 347 |
| MS.gene72782.t1 | AT3G09410 | 47.112 | 329 | 173 | 1 | 29 | 356 | 61 | 389 | 3.99e-115 | 342 |
| MS.gene72782.t1 | AT3G05910 | 58.065 | 248 | 101 | 2 | 29 | 276 | 53 | 297 | 3.17e-104 | 311 |
| MS.gene72782.t1 | AT3G09405 | 44.040 | 302 | 166 | 2 | 88 | 388 | 3 | 302 | 2.51e-96 | 290 |
Find 75 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTTAAAGTTAAATATTC+TGG | 0.238682 | 5.1:-16811995 | MS.gene72782:CDS |
| TACCATTTAGATAGGGGATT+TGG | 0.285592 | 5.1:-16811490 | MS.gene72782:CDS |
| TTCCAAATCCCCTATCTAAA+TGG | 0.292952 | 5.1:+16811488 | None:intergenic |
| GGTAAGGACAATCTATCTTA+TGG | 0.307887 | 5.1:+16809367 | None:intergenic |
| TGCAGTTATGGAAGATTTGC+TGG | 0.318102 | 5.1:-16810904 | MS.gene72782:CDS |
| CACCAGCTTACCATTTAGAT+AGG | 0.372207 | 5.1:-16811498 | MS.gene72782:CDS |
| ACCGATACGTCTTGCGAGAA+AGG | 0.388612 | 5.1:+16811291 | None:intergenic |
| CATTTCACTTTAGCTCCTCT+TGG | 0.394413 | 5.1:+16810704 | None:intergenic |
| GTTATTTAAAATTCCTGAAA+AGG | 0.396090 | 5.1:+16811235 | None:intergenic |
| AAATATTCTGGTGTTTGTAC+TGG | 0.409501 | 5.1:-16811983 | MS.gene72782:CDS |
| AGAGTCTATGAACATTCCTT+TGG | 0.414577 | 5.1:+16809724 | None:intergenic |
| GTTAACAGAAGGGATGTATC+TGG | 0.420364 | 5.1:-16810561 | MS.gene72782:intron |
| ATGAAATGAATCTATACTCC+TGG | 0.429111 | 5.1:+16809297 | None:intergenic |
| TTAGATAGGGGATTTGGAAC+AGG | 0.432017 | 5.1:-16811484 | MS.gene72782:CDS |
| CCCCTATCTAAATGGTAAGC+TGG | 0.447683 | 5.1:+16811496 | None:intergenic |
| AGTCTTGAAGTGCATGATCT+AGG | 0.448651 | 5.1:+16810323 | None:intergenic |
| CTACAATTGGAACAGAATCA+AGG | 0.450624 | 5.1:-16811111 | MS.gene72782:CDS |
| GCCTTTCTCGCAAGACGTAT+CGG | 0.457301 | 5.1:-16811292 | MS.gene72782:CDS |
| ATGTTCCTTGCATTTCAGTT+TGG | 0.458452 | 5.1:+16809687 | None:intergenic |
| CTACAACAGGCTATTATCTC+AGG | 0.458717 | 5.1:-16810785 | MS.gene72782:intron |
| GTTAGGTTCATCTAAGCATA+TGG | 0.460202 | 5.1:-16811270 | MS.gene72782:CDS |
| CTCAAGAGTGCGGTATCAAA+AGG | 0.465683 | 5.1:-16811919 | MS.gene72782:CDS |
| TAGTAGTGACTCTCCATCAT+TGG | 0.466285 | 5.1:-16809660 | MS.gene72782:CDS |
| CAGTTGGTTAGTTCAATTTG+AGG | 0.473805 | 5.1:-16811455 | MS.gene72782:intron |
| GAATTGTAGATTTCTACAAT+TGG | 0.474249 | 5.1:-16811124 | MS.gene72782:intron |
| ATTTGTGATATAACATATTG+AGG | 0.475401 | 5.1:+16810185 | None:intergenic |
| TCTCGCAAGACGTATCGGTT+AGG | 0.476074 | 5.1:-16811287 | MS.gene72782:CDS |
| ATCTCAGGATGTTCAGCTGG+TGG | 0.479723 | 5.1:-16810770 | MS.gene72782:CDS |
| GCCGCATTCACAAGGAAGAT+TGG | 0.480970 | 5.1:+16810155 | None:intergenic |
| CTTACCGTCTTGGCCAATGA+TGG | 0.481283 | 5.1:+16809647 | None:intergenic |
| ATGGAAGATTTGCTGGCAAA+GGG | 0.486962 | 5.1:-16810897 | MS.gene72782:CDS |
| GAATATTTAACTTTAACCAT+TGG | 0.493963 | 5.1:+16811998 | None:intergenic |
| GCTCACAAACTTACCAGCCT+TGG | 0.497601 | 5.1:+16810296 | None:intergenic |
| TTTGTGATATAACATATTGA+GGG | 0.498922 | 5.1:+16810186 | None:intergenic |
| ATTATCTCAGGATGTTCAGC+TGG | 0.500171 | 5.1:-16810773 | MS.gene72782:CDS |
| ACCAGCTTACCATTTAGATA+GGG | 0.500291 | 5.1:-16811497 | MS.gene72782:CDS |
| CTGCTGATCCTCGTGGACAC+TGG | 0.507401 | 5.1:-16809954 | MS.gene72782:CDS |
| AGTGTGGCTTCTTACCGTCT+TGG | 0.513249 | 5.1:+16809637 | None:intergenic |
| TTCAAGACTCAGTCCAAGGC+TGG | 0.518055 | 5.1:-16810309 | MS.gene72782:intron |
| TTACGCGTTGATAAAGTAAC+CGG | 0.521826 | 5.1:+16810670 | None:intergenic |
| TTGCAAAAGCTGTAGCAGAC+TGG | 0.525590 | 5.1:-16809410 | MS.gene72782:CDS |
| CTCTCCATCATTGGCCAAGA+CGG | 0.529374 | 5.1:-16809651 | MS.gene72782:intron |
| TATGGAAGATTTGCTGGCAA+AGG | 0.533137 | 5.1:-16810898 | MS.gene72782:CDS |
| TTAAGGGCATTGACTGCTGT+AGG | 0.537327 | 5.1:-16809758 | MS.gene72782:CDS |
| CCACGAGGATCAGCAGCTCC+CGG | 0.537672 | 5.1:+16809961 | None:intergenic |
| AACAGGAGACAGTTTAATCC+AGG | 0.539572 | 5.1:-16811215 | MS.gene72782:intron |
| CCAGCTTACCATTTAGATAG+GGG | 0.540002 | 5.1:-16811496 | MS.gene72782:CDS |
| TTGGAACAGGAATTAACAGT+TGG | 0.547070 | 5.1:-16811471 | MS.gene72782:CDS |
| ACCAATCTTCCTTGTGAATG+CGG | 0.548127 | 5.1:-16810156 | MS.gene72782:CDS |
| GTGAAATGCCTCTCAGATGC+CGG | 0.552096 | 5.1:-16810689 | MS.gene72782:CDS |
| TGAATGCGGCATACGACTCA+TGG | 0.554322 | 5.1:-16810142 | MS.gene72782:CDS |
| TGAAATGAATCTATACTCCT+GGG | 0.560580 | 5.1:+16809298 | None:intergenic |
| CAACTCGGATTGCAAGGGTA+AGG | 0.564647 | 5.1:+16809351 | None:intergenic |
| GCACTCTTGAGTAAAGTGAT+TGG | 0.568437 | 5.1:+16811931 | None:intergenic |
| TGCGGCATACGACTCATGGC+AGG | 0.571149 | 5.1:-16810138 | MS.gene72782:intron |
| TCTCAGGATGTTCAGCTGGT+GGG | 0.573812 | 5.1:-16810769 | MS.gene72782:CDS |
| ATTGACTGCTTCCACATCAC+CGG | 0.575655 | 5.1:+16811061 | None:intergenic |
| GTTTGTACTGGTATTGCTGA+AGG | 0.583325 | 5.1:-16811971 | MS.gene72782:CDS |
| GTAACTAAGTTGCACTTCAG+AGG | 0.593861 | 5.1:-16810942 | MS.gene72782:CDS |
| AGTCGTATGCCGCATTCACA+AGG | 0.594968 | 5.1:+16810147 | None:intergenic |
| CACTGCCAAACTGAAATGCA+AGG | 0.595547 | 5.1:-16809692 | MS.gene72782:CDS |
| GTATTGCTGAAGGTAGAAGC+TGG | 0.595965 | 5.1:-16811961 | MS.gene72782:CDS |
| CTATCTAAATGGTAAGCTGG+TGG | 0.599663 | 5.1:+16811499 | None:intergenic |
| AAACTGAAATGCAAGGAACA+TGG | 0.604137 | 5.1:-16809685 | MS.gene72782:CDS |
| GCACTTCAAGACTCAGTCCA+AGG | 0.614843 | 5.1:-16810313 | MS.gene72782:CDS |
| AGAACACAAGATTAAGCCAA+TGG | 0.614911 | 5.1:-16812014 | MS.gene72782:CDS |
| GTAGGAAACTCTACATCCAA+AGG | 0.616333 | 5.1:-16809740 | MS.gene72782:CDS |
| CCGGGAGCTGCTGATCCTCG+TGG | 0.625720 | 5.1:-16809961 | MS.gene72782:CDS |
| AGTGCGGTATCAAAAGGAGC+CGG | 0.625776 | 5.1:-16811913 | MS.gene72782:intron |
| AATCAACTAGATCTAATGCA+AGG | 0.629815 | 5.1:-16809895 | MS.gene72782:intron |
| ATCAAGGTTAGATATTGTGA+CGG | 0.630613 | 5.1:-16811095 | MS.gene72782:CDS |
| CAGCTGTGCCAGTGTCCACG+AGG | 0.670610 | 5.1:+16809946 | None:intergenic |
| TTTGAACCACAAGAAAACCC+AGG | 0.673553 | 5.1:-16809315 | MS.gene72782:CDS |
| TAAAGTAACCGGCATCTGAG+AGG | 0.680860 | 5.1:+16810681 | None:intergenic |
| AATCACTTTACTCAAGAGTG+CGG | 0.706525 | 5.1:-16811929 | MS.gene72782:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTATTAGAACAAAAAT+TGG | + | chr5.1:16810179-16810198 | None:intergenic | 15.0% |
| !! | CAATTATTAGAACAAAAATT+GGG | + | chr5.1:16810178-16810197 | None:intergenic | 15.0% |
| !! | GAATCAAATACAATTATTTA+AGG | + | chr5.1:16810734-16810753 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTCAATTTTGTT+AGG | - | chr5.1:16809981-16810000 | MS.gene72782:CDS | 15.0% |
| !!! | TAAGTTTTAACAAAATTCAA+AGG | - | chr5.1:16810292-16810311 | MS.gene72782:intron | 15.0% |
| !!! | TTTCAATTTCAATTTTGTTA+GGG | - | chr5.1:16809982-16810001 | MS.gene72782:CDS | 15.0% |
| !! | ATGGTTAAAGTTAAATATTC+TGG | - | chr5.1:16809331-16809350 | MS.gene72782:CDS | 20.0% |
| !! | ATTTGTGATATAACATATTG+AGG | + | chr5.1:16811144-16811163 | None:intergenic | 20.0% |
| !! | TCAAAACACTAATTTATTGA+TGG | + | chr5.1:16809918-16809937 | None:intergenic | 20.0% |
| !! | TTTGTGATATAACATATTGA+GGG | + | chr5.1:16811143-16811162 | None:intergenic | 20.0% |
| !!! | AAAATCAGACTAGAATATTT+TGG | + | chr5.1:16810941-16810960 | None:intergenic | 20.0% |
| !!! | AAAGTATCATTCAAATGAAA+AGG | + | chr5.1:16810894-16810913 | None:intergenic | 20.0% |
| !!! | AAGAATTTTTAATGCAGTTA+TGG | - | chr5.1:16810410-16810429 | MS.gene72782:intron | 20.0% |
| !!! | CTTTAGAACACAATTTTTAA+GGG | - | chr5.1:16811552-16811571 | MS.gene72782:intron | 20.0% |
| !!! | GAATATTTAACTTTAACCAT+TGG | + | chr5.1:16809331-16809350 | None:intergenic | 20.0% |
| !!! | GTTATTTAAAATTCCTGAAA+AGG | + | chr5.1:16810094-16810113 | None:intergenic | 20.0% |
| !!! | TGAATTTTGTTAAAACTTAC+TGG | + | chr5.1:16810291-16810310 | None:intergenic | 20.0% |
| !!! | TTGATTTTTATGACAATTCT+TGG | - | chr5.1:16809934-16809953 | MS.gene72782:CDS | 20.0% |
| !!! | TTTCAGGAATTTTAAATAAC+AGG | - | chr5.1:16810094-16810113 | MS.gene72782:intron | 20.0% |
| ! | AAAAAAGGAATTGCAAATGT+AGG | + | chr5.1:16811070-16811089 | None:intergenic | 25.0% |
| ! | AAATTTCATCTGAAAAGAAG+AGG | + | chr5.1:16810338-16810357 | None:intergenic | 25.0% |
| ! | AATAATATGACGTGTAAATC+AGG | - | chr5.1:16810362-16810381 | MS.gene72782:intron | 25.0% |
| ! | AATGCATAAAGTCAGTTATT+CGG | + | chr5.1:16811876-16811895 | None:intergenic | 25.0% |
| ! | AATTTCATCTGAAAAGAAGA+GGG | + | chr5.1:16810337-16810356 | None:intergenic | 25.0% |
| ! | ACACAAAATAGTTATATGCT+TGG | + | chr5.1:16811821-16811840 | None:intergenic | 25.0% |
| ! | ATAAATAACAGCACCAAAAA+AGG | + | chr5.1:16811085-16811104 | None:intergenic | 25.0% |
| ! | ATATCCAGGTTTCATTAATT+TGG | + | chr5.1:16810863-16810882 | None:intergenic | 25.0% |
| ! | GAATTGTAGATTTCTACAAT+TGG | - | chr5.1:16810202-16810221 | MS.gene72782:intron | 25.0% |
| ! | TATCCAGGTTTCATTAATTT+GGG | + | chr5.1:16810862-16810881 | None:intergenic | 25.0% |
| ! | TTAAGGAACTTCAAAAGATT+AGG | + | chr5.1:16810717-16810736 | None:intergenic | 25.0% |
| ! | TTATGGAAAAAAGAATAGTG+TGG | + | chr5.1:16811708-16811727 | None:intergenic | 25.0% |
| !! | AATATGTTTCTGTTAACAGA+AGG | - | chr5.1:16810754-16810773 | MS.gene72782:CDS | 25.0% |
| !! | AATTTCAATTTTGTTAGGGA+GGG | - | chr5.1:16809986-16810005 | MS.gene72782:intron | 25.0% |
| !! | ATATGTTTCTGTTAACAGAA+GGG | - | chr5.1:16810755-16810774 | MS.gene72782:CDS | 25.0% |
| !! | CTTGGAAGATTCTATATTTT+TGG | - | chr5.1:16809952-16809971 | MS.gene72782:CDS | 25.0% |
| !! | GGATATCTCATGTTATTTAA+AGG | + | chr5.1:16811279-16811298 | None:intergenic | 25.0% |
| !! | TTTTCCATAATCTTTTTCCA+CGG | - | chr5.1:16811718-16811737 | MS.gene72782:intron | 25.0% |
| !!! | GCTTTAGAACACAATTTTTA+AGG | - | chr5.1:16811551-16811570 | MS.gene72782:intron | 25.0% |
| !!! | TAAATTTTGTGCAGTTTGTT+TGG | - | chr5.1:16809796-16809815 | MS.gene72782:intron | 25.0% |
| !!! | TACATTTGCAATTCCTTTTT+TGG | - | chr5.1:16811069-16811088 | MS.gene72782:CDS | 25.0% |
| !!! | TTTTTTTTCTTCATAACTGC+AGG | - | chr5.1:16811474-16811493 | MS.gene72782:CDS | 25.0% |
| AAATATTCTGGTGTTTGTAC+TGG | - | chr5.1:16809343-16809362 | MS.gene72782:CDS | 30.0% | |
| AACAGACAAACAGAAAAGTA+AGG | + | chr5.1:16809455-16809474 | None:intergenic | 30.0% | |
| AATCAACTAGATCTAATGCA+AGG | - | chr5.1:16811431-16811450 | MS.gene72782:intron | 30.0% | |
| ACAGTTTATGACAAGTTCAT+AGG | + | chr5.1:16809641-16809660 | None:intergenic | 30.0% | |
| ATAACATGAGATATCCAACA+AGG | - | chr5.1:16811283-16811302 | MS.gene72782:CDS | 30.0% | |
| ATCAAGGTTAGATATTGTGA+CGG | - | chr5.1:16810231-16810250 | MS.gene72782:intron | 30.0% | |
| ATTTACTAGCACAAAATACC+TGG | + | chr5.1:16810132-16810151 | None:intergenic | 30.0% | |
| ATTTCATCTGAAAAGAAGAG+GGG | + | chr5.1:16810336-16810355 | None:intergenic | 30.0% | |
| CTAGGTACATTTGGATAATT+TGG | + | chr5.1:16811767-16811786 | None:intergenic | 30.0% | |
| TAAGCACTTGTGAAAGTTTA+TGG | + | chr5.1:16809666-16809685 | None:intergenic | 30.0% | |
| TTTCCCAAATTAATGAAACC+TGG | - | chr5.1:16810856-16810875 | MS.gene72782:intron | 30.0% | |
| ! | AGGTATTTTGTGCTAGTAAA+TGG | - | chr5.1:16810131-16810150 | MS.gene72782:intron | 30.0% |
| ! | ATTTCAATTTTGTTAGGGAG+GGG | - | chr5.1:16809987-16810006 | MS.gene72782:intron | 30.0% |
| ! | CAATTTCAATTTTGTTAGGG+AGG | - | chr5.1:16809985-16810004 | MS.gene72782:intron | 30.0% |
| ! | TCCGTCTTTTCTTTCTAATA+GGG | - | chr5.1:16810964-16810983 | MS.gene72782:intron | 30.0% |
| ! | TTCCGTCTTTTCTTTCTAAT+AGG | - | chr5.1:16810963-16810982 | MS.gene72782:intron | 30.0% |
| ! | TTTACCATGACTTGATTTTC+AGG | - | chr5.1:16811529-16811548 | MS.gene72782:intron | 30.0% |
| !! | ATTAAGAACATTTTAGCACC+GGG | - | chr5.1:16811347-16811366 | MS.gene72782:intron | 30.0% |
| !! | GATTAAGAACATTTTAGCAC+CGG | - | chr5.1:16811346-16811365 | MS.gene72782:intron | 30.0% |
| !! | TAGCTTTAGTAGATTCTGTT+TGG | - | chr5.1:16809481-16809500 | MS.gene72782:intron | 30.0% |
| AAAAGGTCGAAAACATATCC+AGG | + | chr5.1:16810877-16810896 | None:intergenic | 35.0% | |
| AAACTGAAATGCAAGGAACA+TGG | - | chr5.1:16811641-16811660 | MS.gene72782:intron | 35.0% | |
| AAAGCCTGAAAATCAAGTCA+TGG | + | chr5.1:16811536-16811555 | None:intergenic | 35.0% | |
| AATCACTTTACTCAAGAGTG+CGG | - | chr5.1:16809397-16809416 | MS.gene72782:CDS | 35.0% | |
| ACCAGCTTACCATTTAGATA+GGG | - | chr5.1:16809829-16809848 | MS.gene72782:intron | 35.0% | |
| AGAACACAAGATTAAGCCAA+TGG | - | chr5.1:16809312-16809331 | MS.gene72782:CDS | 35.0% | |
| AGAGTCTATGAACATTCCTT+TGG | + | chr5.1:16811605-16811624 | None:intergenic | 35.0% | |
| AGCACAATCAAAGTCATGTT+TGG | + | chr5.1:16809718-16809737 | None:intergenic | 35.0% | |
| AGGAAAAAAGAACTCCTAAC+CGG | + | chr5.1:16809435-16809454 | None:intergenic | 35.0% | |
| ATGTTCCTTGCATTTCAGTT+TGG | + | chr5.1:16811642-16811661 | None:intergenic | 35.0% | |
| CTACAATTGGAACAGAATCA+AGG | - | chr5.1:16810215-16810234 | MS.gene72782:intron | 35.0% | |
| GCCCTATTAGAAAGAAAAGA+CGG | + | chr5.1:16810968-16810987 | None:intergenic | 35.0% | |
| GGTAAGGACAATCTATCTTA+TGG | + | chr5.1:16811962-16811981 | None:intergenic | 35.0% | |
| GTTAGGTTCATCTAAGCATA+TGG | - | chr5.1:16810056-16810075 | MS.gene72782:intron | 35.0% | |
| TACCATTTAGATAGGGGATT+TGG | - | chr5.1:16809836-16809855 | MS.gene72782:intron | 35.0% | |
| TTCCAAATCCCCTATCTAAA+TGG | + | chr5.1:16809841-16809860 | None:intergenic | 35.0% | |
| TTGGAACAGGAATTAACAGT+TGG | - | chr5.1:16809855-16809874 | MS.gene72782:intron | 35.0% | |
| TTTCATCTGAAAAGAAGAGG+GGG | + | chr5.1:16810335-16810354 | None:intergenic | 35.0% | |
| TTTCTTGTGGTTCAAAAACG+CGG | + | chr5.1:16812007-16812026 | None:intergenic | 35.0% | |
| TTTGGGAAATGATCAGAGTT+AGG | + | chr5.1:16810845-16810864 | None:intergenic | 35.0% | |
| ! | AAAACGCGGTTTTTACAACT+CGG | + | chr5.1:16811993-16812012 | None:intergenic | 35.0% |
| ! | CAGTTGGTTAGTTCAATTTG+AGG | - | chr5.1:16809871-16809890 | MS.gene72782:intron | 35.0% |
| ! | GCTAATCAAATTGCCTTTTC+AGG | - | chr5.1:16810078-16810097 | MS.gene72782:intron | 35.0% |
| ! | TTACGCGTTGATAAAGTAAC+CGG | + | chr5.1:16810659-16810678 | None:intergenic | 35.0% |
| ! | TTGATGGCAATCTGTAGAAA+AGG | + | chr5.1:16809902-16809921 | None:intergenic | 35.0% |
| ! | TTTCAATTTTGTTAGGGAGG+GGG | - | chr5.1:16809988-16810007 | MS.gene72782:intron | 35.0% |
| ! | TTTTACAACTCGGATTGCAA+GGG | + | chr5.1:16811983-16812002 | None:intergenic | 35.0% |
| ! | TTTTCATAAGCTTTCCCGAA+GGG | - | chr5.1:16809591-16809610 | MS.gene72782:intron | 35.0% |
| ! | TTTTTACAACTCGGATTGCA+AGG | + | chr5.1:16811984-16812003 | None:intergenic | 35.0% |
| !! | TTTTGTGCAGTTTGTTTGGA+TGG | - | chr5.1:16809800-16809819 | MS.gene72782:intron | 35.0% |
| AACAGGAGACAGTTTAATCC+AGG | - | chr5.1:16810111-16810130 | MS.gene72782:intron | 40.0% | |
| ACCAATCTTCCTTGTGAATG+CGG | - | chr5.1:16811170-16811189 | MS.gene72782:intron | 40.0% | |
| AGTATTTCCATTAGCCCTTC+GGG | + | chr5.1:16809608-16809627 | None:intergenic | 40.0% | |
| AGTCTTGAAGTGCATGATCT+AGG | + | chr5.1:16811006-16811025 | None:intergenic | 40.0% | |
| AGTGCAATTTCTTGAGGATC+AGG | + | chr5.1:16811315-16811334 | None:intergenic | 40.0% | |
| ATTATCTCAGGATGTTCAGC+TGG | - | chr5.1:16810553-16810572 | MS.gene72782:CDS | 40.0% | |
| CAAAGCAGTGCAATTTCTTG+AGG | + | chr5.1:16811321-16811340 | None:intergenic | 40.0% | |
| CACCAGCTTACCATTTAGAT+AGG | - | chr5.1:16809828-16809847 | MS.gene72782:intron | 40.0% | |
| CCAAATGTACCTAGATCCAA+CGG | - | chr5.1:16811773-16811792 | MS.gene72782:intron | 40.0% | |
| CCAGAACTTGTAACTACAAC+AGG | - | chr5.1:16810528-16810547 | MS.gene72782:CDS | 40.0% | |
| CCAGCTTACCATTTAGATAG+GGG | - | chr5.1:16809830-16809849 | MS.gene72782:intron | 40.0% | |
| CCTGTTGTAGTTACAAGTTC+TGG | + | chr5.1:16810531-16810550 | None:intergenic | 40.0% | |
| CGGCTACATGAGATATATGA+AGG | + | chr5.1:16811856-16811875 | None:intergenic | 40.0% | |
| CTACAACAGGCTATTATCTC+AGG | - | chr5.1:16810541-16810560 | MS.gene72782:CDS | 40.0% | |
| CTATCTAAATGGTAAGCTGG+TGG | + | chr5.1:16809830-16809849 | None:intergenic | 40.0% | |
| GAGTATTTCCATTAGCCCTT+CGG | + | chr5.1:16809609-16809628 | None:intergenic | 40.0% | |
| GCACTCTTGAGTAAAGTGAT+TGG | + | chr5.1:16809398-16809417 | None:intergenic | 40.0% | |
| GTAACTAAGTTGCACTTCAG+AGG | - | chr5.1:16810384-16810403 | MS.gene72782:intron | 40.0% | |
| GTAGGAAACTCTACATCCAA+AGG | - | chr5.1:16811586-16811605 | MS.gene72782:intron | 40.0% | |
| GTGCAATTTCTTGAGGATCA+GGG | + | chr5.1:16811314-16811333 | None:intergenic | 40.0% | |
| GTTAACAGAAGGGATGTATC+TGG | - | chr5.1:16810765-16810784 | MS.gene72782:CDS | 40.0% | |
| TAGTAGTGACTCTCCATCAT+TGG | - | chr5.1:16811666-16811685 | MS.gene72782:intron | 40.0% | |
| TCGGGAAAGCTTATGAAAAC+AGG | + | chr5.1:16809590-16809609 | None:intergenic | 40.0% | |
| TGCAGTTATGGAAGATTTGC+TGG | - | chr5.1:16810422-16810441 | MS.gene72782:intron | 40.0% | |
| TTTGAACCACAAGAAAACCC+AGG | - | chr5.1:16812011-16812030 | MS.gene72782:CDS | 40.0% | |
| ! | CATTTCACTTTAGCTCCTCT+TGG | + | chr5.1:16810625-16810644 | None:intergenic | 40.0% |
| ! | GTTTGTACTGGTATTGCTGA+AGG | - | chr5.1:16809355-16809374 | MS.gene72782:CDS | 40.0% |
| ! | GTTTTCATAAGCTTTCCCGA+AGG | - | chr5.1:16809590-16809609 | MS.gene72782:intron | 40.0% |
| ! | TATACTCCTGGGTTTTCTTG+TGG | + | chr5.1:16812020-16812039 | None:intergenic | 40.0% |
| ! | TTAGATAGGGGATTTGGAAC+AGG | - | chr5.1:16809842-16809861 | MS.gene72782:intron | 40.0% |
| !! | ATGGAAGATTTGCTGGCAAA+GGG | - | chr5.1:16810429-16810448 | MS.gene72782:intron | 40.0% |
| !! | TATGGAAGATTTGCTGGCAA+AGG | - | chr5.1:16810428-16810447 | MS.gene72782:intron | 40.0% |
| ATTGACTGCTTCCACATCAC+CGG | + | chr5.1:16810268-16810287 | None:intergenic | 45.0% | |
| CACTGCCAAACTGAAATGCA+AGG | - | chr5.1:16811634-16811653 | MS.gene72782:intron | 45.0% | |
| CCCCTATCTAAATGGTAAGC+TGG | + | chr5.1:16809833-16809852 | None:intergenic | 45.0% | |
| CCGTTGGATCTAGGTACATT+TGG | + | chr5.1:16811776-16811795 | None:intergenic | 45.0% | |
| CTCCTCTTGGAAAAAGAGCT+CGG | + | chr5.1:16810612-16810631 | None:intergenic | 45.0% | |
| CTGCAGAGTCGTTAGATTCA+AGG | - | chr5.1:16811741-16811760 | MS.gene72782:intron | 45.0% | |
| GCAGCCGTGGAAAAAGATTA+TGG | + | chr5.1:16811725-16811744 | None:intergenic | 45.0% | |
| GTATTGCTGAAGGTAGAAGC+TGG | - | chr5.1:16809365-16809384 | MS.gene72782:CDS | 45.0% | |
| TAAAGTAACCGGCATCTGAG+AGG | + | chr5.1:16810648-16810667 | None:intergenic | 45.0% | |
| TATGCTTGGATTCTTTGCCG+CGG | + | chr5.1:16811807-16811826 | None:intergenic | 45.0% | |
| TTGCAAAAGCTGTAGCAGAC+TGG | - | chr5.1:16811916-16811935 | MS.gene72782:CDS | 45.0% | |
| ! | AATTTTGTTAGGGAGGGGGA+TGG | - | chr5.1:16809992-16810011 | MS.gene72782:intron | 45.0% |
| ! | CTCAAGAGTGCGGTATCAAA+AGG | - | chr5.1:16809407-16809426 | MS.gene72782:CDS | 45.0% |
| ! | TGTGACGGTTCGTCTTTTAC+CGG | - | chr5.1:16810246-16810265 | MS.gene72782:intron | 45.0% |
| ! | TTCCGAGCTCTTTTTCCAAG+AGG | - | chr5.1:16810607-16810626 | MS.gene72782:intron | 45.0% |
| ! | TTCGTCTTTTACCGGTGATG+TGG | - | chr5.1:16810254-16810273 | MS.gene72782:intron | 45.0% |
| !! | TTAAGGGCATTGACTGCTGT+AGG | - | chr5.1:16811568-16811587 | MS.gene72782:intron | 45.0% |
| AAGCTTTCCCGAAGGGCTAA+TGG | - | chr5.1:16809598-16809617 | MS.gene72782:intron | 50.0% | |
| ACCGATACGTCTTGCGAGAA+AGG | + | chr5.1:16810038-16810057 | None:intergenic | 50.0% | |
| AGTCGTATGCCGCATTCACA+AGG | + | chr5.1:16811182-16811201 | None:intergenic | 50.0% | |
| AGTGCGGTATCAAAAGGAGC+CGG | - | chr5.1:16809413-16809432 | MS.gene72782:CDS | 50.0% | |
| AGTGTGGCTTCTTACCGTCT+TGG | + | chr5.1:16811692-16811711 | None:intergenic | 50.0% | |
| ATCTCAGGATGTTCAGCTGG+TGG | - | chr5.1:16810556-16810575 | MS.gene72782:CDS | 50.0% | |
| CAACTCGGATTGCAAGGGTA+AGG | + | chr5.1:16811978-16811997 | None:intergenic | 50.0% | |
| CTCTCCATCATTGGCCAAGA+CGG | - | chr5.1:16811675-16811694 | MS.gene72782:intron | 50.0% | |
| CTTACCGTCTTGGCCAATGA+TGG | + | chr5.1:16811682-16811701 | None:intergenic | 50.0% | |
| GCACTTCAAGACTCAGTCCA+AGG | - | chr5.1:16811013-16811032 | MS.gene72782:intron | 50.0% | |
| GCCGCATTCACAAGGAAGAT+TGG | + | chr5.1:16811174-16811193 | None:intergenic | 50.0% | |
| GCCTTTCTCGCAAGACGTAT+CGG | - | chr5.1:16810034-16810053 | MS.gene72782:intron | 50.0% | |
| GCTCACAAACTTACCAGCCT+TGG | + | chr5.1:16811033-16811052 | None:intergenic | 50.0% | |
| GGTATCAAAAGGAGCCGGTT+AGG | - | chr5.1:16809418-16809437 | MS.gene72782:intron | 50.0% | |
| GTGAAATGCCTCTCAGATGC+CGG | - | chr5.1:16810637-16810656 | MS.gene72782:intron | 50.0% | |
| TCTCAGGATGTTCAGCTGGT+GGG | - | chr5.1:16810557-16810576 | MS.gene72782:intron | 50.0% | |
| TGAATGCGGCATACGACTCA+TGG | - | chr5.1:16811184-16811203 | MS.gene72782:intron | 50.0% | |
| TTCAAGACTCAGTCCAAGGC+TGG | - | chr5.1:16811017-16811036 | MS.gene72782:intron | 50.0% | |
| ! | GGATCAGGGAAAAGCCTTGT+TGG | + | chr5.1:16811300-16811319 | None:intergenic | 50.0% |
| !! | TCTCGCAAGACGTATCGGTT+AGG | - | chr5.1:16810039-16810058 | MS.gene72782:intron | 50.0% |
| ATCTAACGACTCTGCAGCCG+TGG | + | chr5.1:16811738-16811757 | None:intergenic | 55.0% | |
| CTGCTGATCCTCGTGGACAC+TGG | - | chr5.1:16811372-16811391 | MS.gene72782:intron | 60.0% | |
| GCTGCAGAGCCGTTGGATCT+AGG | + | chr5.1:16811785-16811804 | None:intergenic | 60.0% | |
| TGCGGCATACGACTCATGGC+AGG | - | chr5.1:16811188-16811207 | MS.gene72782:intron | 60.0% | |
| ATCCAACGGCTCTGCAGCCG+CGG | - | chr5.1:16811787-16811806 | MS.gene72782:intron | 65.0% | |
| CAGCTGTGCCAGTGTCCACG+AGG | + | chr5.1:16811383-16811402 | None:intergenic | 65.0% | |
| CCACGAGGATCAGCAGCTCC+CGG | + | chr5.1:16811368-16811387 | None:intergenic | 65.0% | |
| CCGGGAGCTGCTGATCCTCG+TGG | - | chr5.1:16811365-16811384 | MS.gene72782:intron | 70.0% | |
| TGCCGCGGCTGCAGAGCCGT+TGG | + | chr5.1:16811792-16811811 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 16809308 | 16812040 | 16809308 | ID=MS.gene72782 |
| chr5.1 | mRNA | 16809308 | 16812040 | 16809308 | ID=MS.gene72782.t1;Parent=MS.gene72782 |
| chr5.1 | exon | 16811914 | 16812040 | 16811914 | ID=MS.gene72782.t1.exon1;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16811914 | 16812040 | 16811914 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16811456 | 16811538 | 16811456 | ID=MS.gene72782.t1.exon2;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16811456 | 16811538 | 16811456 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16811216 | 16811345 | 16811216 | ID=MS.gene72782.t1.exon3;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16811216 | 16811345 | 16811216 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16811058 | 16811137 | 16811058 | ID=MS.gene72782.t1.exon4;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16811058 | 16811137 | 16811058 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16810878 | 16810964 | 16810878 | ID=MS.gene72782.t1.exon5;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16810878 | 16810964 | 16810878 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16810674 | 16810798 | 16810674 | ID=MS.gene72782.t1.exon6;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16810674 | 16810798 | 16810674 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16810515 | 16810575 | 16810515 | ID=MS.gene72782.t1.exon7;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16810515 | 16810575 | 16810515 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16810310 | 16810363 | 16810310 | ID=MS.gene72782.t1.exon8;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16810310 | 16810363 | 16810310 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16810139 | 16810216 | 16810139 | ID=MS.gene72782.t1.exon9;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16810139 | 16810216 | 16810139 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16809896 | 16810001 | 16809896 | ID=MS.gene72782.t1.exon10;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16809896 | 16810001 | 16809896 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16809652 | 16809797 | 16809652 | ID=MS.gene72782.t1.exon11;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16809652 | 16809797 | 16809652 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| chr5.1 | exon | 16809308 | 16809436 | 16809308 | ID=MS.gene72782.t1.exon12;Parent=MS.gene72782.t1 |
| chr5.1 | CDS | 16809308 | 16809436 | 16809308 | ID=cds.MS.gene72782.t1;Parent=MS.gene72782.t1 |
| Gene Sequence |
| Protein sequence |
