Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72807.t1 | XP_024627930.1 | 66.4 | 453 | 120 | 4 | 1 | 446 | 1 | 428 | 5.70E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72807.t1 | A0A396I0R2 | 66.7 | 531 | 104 | 6 | 1 | 518 | 1 | 471 | 7.8e-138 | 500.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05351 | MS.gene72807 | 0.845474 | 3.97E-59 | -1.69E-46 |
| MS.gene057814 | MS.gene72807 | 0.8184 | 2.00E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72807.t1 | MTR_0029s0140 | 82.517 | 143 | 25 | 0 | 376 | 518 | 241 | 383 | 1.09e-66 | 221 |
| MS.gene72807.t1 | MTR_0029s0140 | 80.769 | 78 | 15 | 0 | 168 | 245 | 162 | 239 | 1.96e-40 | 151 |
| MS.gene72807.t1 | MTR_2g020090 | 63.953 | 172 | 55 | 2 | 353 | 518 | 33 | 203 | 5.48e-66 | 214 |
| MS.gene72807.t1 | MTR_2g102860 | 82.963 | 135 | 23 | 0 | 384 | 518 | 13 | 147 | 1.15e-65 | 211 |
| MS.gene72807.t1 | MTR_4g017750 | 82.394 | 142 | 21 | 1 | 377 | 518 | 110 | 247 | 1.22e-65 | 214 |
| MS.gene72807.t1 | MTR_3g058800 | 73.050 | 141 | 37 | 1 | 378 | 518 | 10 | 149 | 4.49e-64 | 207 |
| MS.gene72807.t1 | MTR_5g080310 | 80.851 | 141 | 23 | 1 | 378 | 518 | 122 | 258 | 9.10e-63 | 207 |
| MS.gene72807.t1 | MTR_1g023240 | 70.303 | 165 | 43 | 1 | 365 | 529 | 23 | 181 | 3.88e-61 | 202 |
| MS.gene72807.t1 | MTR_6g463490 | 83.186 | 113 | 19 | 0 | 406 | 518 | 3 | 115 | 9.92e-61 | 197 |
| MS.gene72807.t1 | MTR_4g023110 | 73.134 | 134 | 35 | 1 | 376 | 509 | 7 | 139 | 3.67e-60 | 195 |
| MS.gene72807.t1 | MTR_8g027455 | 60.800 | 125 | 47 | 2 | 376 | 499 | 23 | 146 | 1.42e-41 | 155 |
| MS.gene72807.t1 | MTR_1g077650 | 66.346 | 104 | 34 | 1 | 377 | 480 | 46 | 148 | 9.67e-40 | 143 |
| MS.gene72807.t1 | MTR_7g035425 | 39.844 | 128 | 72 | 3 | 211 | 336 | 216 | 340 | 5.49e-23 | 100 |
| MS.gene72807.t1 | MTR_7g037680 | 29.858 | 211 | 116 | 5 | 289 | 498 | 17 | 196 | 9.97e-20 | 89.4 |
| MS.gene72807.t1 | MTR_5g053700 | 81.250 | 48 | 5 | 1 | 470 | 517 | 1 | 44 | 1.50e-17 | 77.0 |
| MS.gene72807.t1 | MTR_2g077640 | 29.032 | 217 | 110 | 7 | 246 | 458 | 34 | 210 | 2.46e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 168 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 5.1:+17180903 | MS.gene72807:CDS |
| CATGATTGAGGGTTAGTCTT+AGG | 0.184506 | 5.1:-17183321 | None:intergenic |
| CGGATTTGTTGTTGGGAAAA+AGG | 0.185562 | 5.1:-17180505 | None:intergenic |
| TGTGGGAGGGACCTTGAGCC+TGG | 0.232485 | 5.1:-17183513 | None:intergenic |
| TTTGGCACCATACCTCCTTA+TGG | 0.256563 | 5.1:+17180382 | MS.gene72807:CDS |
| CCAGTACATCCTGGATATTT+TGG | 0.258713 | 5.1:+17180364 | MS.gene72807:CDS |
| TGGAGGGATTTGTTGTTGTT+GGG | 0.261186 | 5.1:-17180470 | None:intergenic |
| GTGGAGGGATTTGTTGTTGT+TGG | 0.265730 | 5.1:-17180471 | None:intergenic |
| CTGGCGTCAGCTCAGGCTGC+TGG | 0.280344 | 5.1:-17183357 | None:intergenic |
| TGATCAATTGGTTAAGTATT+GGG | 0.285226 | 5.1:+17181167 | MS.gene72807:CDS |
| TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 5.1:-17180124 | None:intergenic |
| CCCGCCTATCTTTGATCAAT+TGG | 0.302825 | 5.1:+17181155 | MS.gene72807:CDS |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 5.1:+17180845 | MS.gene72807:CDS |
| TTGCTCTTTCCATTAGGTTT+CGG | 0.328125 | 5.1:-17180118 | None:intergenic |
| TTGGCACCATACCTCCTTAT+GGG | 0.340325 | 5.1:+17180383 | MS.gene72807:CDS |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 5.1:+17181007 | MS.gene72807:intron |
| CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 5.1:-17181214 | None:intergenic |
| CTTGCCGAGGCTATTTCTAA+TGG | 0.350981 | 5.1:+17183172 | MS.gene72807:CDS |
| TCCTCCTCATCTACCGGATA+AGG | 0.372127 | 5.1:-17183568 | None:intergenic |
| TCTTCTAGCCAGGGATCACC+TGG | 0.378638 | 5.1:+17180256 | MS.gene72807:CDS |
| GGATTTGTTGTTGTTGGGGA+AGG | 0.379887 | 5.1:-17180465 | None:intergenic |
| CGCATCTCTGGCGTCAGCTC+AGG | 0.380128 | 5.1:-17183364 | None:intergenic |
| TTGATCAATTGGTTAAGTAT+TGG | 0.389666 | 5.1:+17181166 | MS.gene72807:CDS |
| ATGATTGAGGGTTAGTCTTA+GGG | 0.390145 | 5.1:-17183320 | None:intergenic |
| CGAGAATCTCTCAGATAATC+CGG | 0.394695 | 5.1:-17180667 | None:intergenic |
| ATTTGTTGTTGTTGGGGAAG+GGG | 0.399109 | 5.1:-17180463 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 5.1:-17181110 | None:intergenic |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.410992 | 5.1:+17180246 | MS.gene72807:CDS |
| TTGTGGACGGATTTGTTGTT+GGG | 0.411777 | 5.1:-17180512 | None:intergenic |
| GTTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 5.1:-17180459 | None:intergenic |
| GAAGAACCGGGCGTCGGAAA+AGG | 0.413034 | 5.1:+17181227 | MS.gene72807:CDS |
| GCTATACGGTCTTGGTAACT+TGG | 0.413255 | 5.1:+17183264 | MS.gene72807:CDS |
| TGAATAAGCTCCCGCATCTC+TGG | 0.423368 | 5.1:-17183376 | None:intergenic |
| CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 5.1:+17181214 | MS.gene72807:CDS |
| CAGGAGCAGCTACACTAGCC+TGG | 0.433549 | 5.1:-17180285 | None:intergenic |
| AGGAGCAGCTGGCTCAGTTT+AGG | 0.434219 | 5.1:+17183485 | MS.gene72807:CDS |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 5.1:+17181008 | MS.gene72807:intron |
| TTGCCGAGGCTATTTCTAAT+GGG | 0.436783 | 5.1:+17183173 | MS.gene72807:CDS |
| TGAAGAGGGTGGTGGAGAGC+TGG | 0.438701 | 5.1:+17180624 | MS.gene72807:CDS |
| TGAGCTGACGCCAGAGATGC+GGG | 0.441007 | 5.1:+17183366 | MS.gene72807:CDS |
| CCTCCTCATCTACCGGATAA+GGG | 0.441831 | 5.1:-17183567 | None:intergenic |
| GGAATGCCTCCGAAACCTAA+TGG | 0.442258 | 5.1:+17180109 | None:intergenic |
| CCAAAATATCCAGGATGTAC+TGG | 0.443632 | 5.1:-17180364 | None:intergenic |
| TCGTGAAGCTCGTTAATAAA+CGG | 0.445154 | 5.1:-17181418 | None:intergenic |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 5.1:+17180686 | MS.gene72807:CDS |
| TGGCGTCAGCTCAGGCTGCT+GGG | 0.447507 | 5.1:-17183356 | None:intergenic |
| TTTCTTGTTGGGGCTGTGGT+GGG | 0.448866 | 5.1:-17180594 | None:intergenic |
| AAGAAGAAGGGAAAGCTATA+CGG | 0.450481 | 5.1:+17183250 | MS.gene72807:CDS |
| GCGGTATAATACGCACTTAG+TGG | 0.451303 | 5.1:+17180156 | MS.gene72807:CDS |
| GTTGTGGACGGATTTGTTGT+TGG | 0.460674 | 5.1:-17180513 | None:intergenic |
| TTAACCAATTGATCAAAGAT+AGG | 0.461920 | 5.1:-17181159 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 5.1:-17180814 | None:intergenic |
| GGGAGGACCCAGGTGATCCC+TGG | 0.467266 | 5.1:-17180264 | None:intergenic |
| AGGACCCTTCACCATGATTG+AGG | 0.467659 | 5.1:-17183333 | None:intergenic |
| AGAAAGCGGCCGCATTGGAT+TGG | 0.468839 | 5.1:+17181132 | MS.gene72807:CDS |
| GATTTGTTGTTGTTGGGGAA+GGG | 0.469554 | 5.1:-17180464 | None:intergenic |
| AGACAAGAAAGCGGCCGCAT+TGG | 0.471247 | 5.1:+17181127 | MS.gene72807:CDS |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 5.1:+17181104 | MS.gene72807:CDS |
| ACCGGATAAGGGTCAACATT+GGG | 0.473537 | 5.1:-17183556 | None:intergenic |
| AAGGGAAAGCTATACGGTCT+TGG | 0.480141 | 5.1:+17183256 | MS.gene72807:CDS |
| GTTGTTGTTGGGGAACATGT+GGG | 0.484069 | 5.1:-17180540 | None:intergenic |
| GCTCCTCATATGACCTTTGA+CGG | 0.484551 | 5.1:-17183468 | None:intergenic |
| GGAGGGATTTGTTGTTGTTG+GGG | 0.486144 | 5.1:-17180469 | None:intergenic |
| CACACCTTCCCAAGAACACT+TGG | 0.486595 | 5.1:-17181016 | None:intergenic |
| TTGATGCAACACTACCCTTC+CGG | 0.489648 | 5.1:-17183297 | None:intergenic |
| CGGAGAGCACGCTGAGCGTA+TGG | 0.490492 | 5.1:+17181284 | MS.gene72807:CDS |
| TCCCAATGTTGACCCTTATC+CGG | 0.490951 | 5.1:+17183555 | MS.gene72807:CDS |
| GGGATCACCTGGGTCCTCCC+AGG | 0.492872 | 5.1:+17180267 | MS.gene72807:CDS |
| TGTTGTTGTTGGGGAACATG+TGG | 0.495070 | 5.1:-17180541 | None:intergenic |
| GGCTCAGTTTAGGCAAGCCC+AGG | 0.496816 | 5.1:+17183495 | MS.gene72807:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 5.1:+17181185 | MS.gene72807:CDS |
| AAGAACCGGGCGTCGGAAAA+GGG | 0.501037 | 5.1:+17181228 | MS.gene72807:CDS |
| CTCTTTCCATTAGGTTTCGG+AGG | 0.502358 | 5.1:-17180115 | None:intergenic |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 5.1:+17180131 | MS.gene72807:CDS |
| ATTCTTTGACCTTCAACACT+TGG | 0.510375 | 5.1:+17183209 | MS.gene72807:CDS |
| TAGCACGCTCGTCGCAGTAT+TGG | 0.511497 | 5.1:-17181465 | None:intergenic |
| GCAGGAGCAGAAGCCGTCGC+AGG | 0.511679 | 5.1:-17180304 | None:intergenic |
| AAGATTTGCTTAACCGTCAA+AGG | 0.511841 | 5.1:+17183455 | MS.gene72807:CDS |
| TGAGGAGCAGAAGCCGTCGC+AGG | 0.513097 | 5.1:-17180322 | None:intergenic |
| TGTTGTTGTTGGGGTTGTGG+TGG | 0.516082 | 5.1:-17180568 | None:intergenic |
| GCAGTAGAAATGACATGGAT+CGG | 0.520225 | 5.1:-17180205 | None:intergenic |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 5.1:-17180836 | None:intergenic |
| GTGGGAGGGACCTTGAGCCT+GGG | 0.524940 | 5.1:-17183512 | None:intergenic |
| GCTTCAGCAGCCGGTTTGCA+AGG | 0.525763 | 5.1:-17180805 | None:intergenic |
| CAGTAGAAATGACATGGATC+GGG | 0.526719 | 5.1:-17180204 | None:intergenic |
| AATACTGCGACGAGCGTGCT+AGG | 0.528270 | 5.1:+17181467 | MS.gene72807:CDS |
| GGACCCTTCACCATGATTGA+GGG | 0.531656 | 5.1:-17183332 | None:intergenic |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 5.1:-17180347 | None:intergenic |
| CCAATTGATCAAAGATAGGC+GGG | 0.535490 | 5.1:-17181155 | None:intergenic |
| AGGAGCAGCTACACTAGCCT+GGG | 0.541346 | 5.1:-17180284 | None:intergenic |
| TAACCGTCAAAGGTCATATG+AGG | 0.541572 | 5.1:+17183465 | MS.gene72807:CDS |
| GAAGGTCCCATAAGGAGGTA+TGG | 0.543026 | 5.1:-17180389 | None:intergenic |
| TTAAAAGCGGCGCACTAGTG+TGG | 0.545514 | 5.1:-17183531 | None:intergenic |
| GGAGGAAGGAAGGTCCCATA+AGG | 0.547026 | 5.1:-17180397 | None:intergenic |
| AAGGTCATATGAGGAGCAGC+TGG | 0.548144 | 5.1:+17183474 | MS.gene72807:CDS |
| TTAATTGCTCTTGCGTCAAA+CGG | 0.548902 | 5.1:-17183399 | None:intergenic |
| GACGGCTTCTGCTCCTGCGA+CGG | 0.550829 | 5.1:+17180309 | MS.gene72807:CDS |
| TAAAAGCGGCGCACTAGTGT+GGG | 0.551339 | 5.1:-17183530 | None:intergenic |
| CTGAGCTGACGCCAGAGATG+CGG | 0.553348 | 5.1:+17183365 | MS.gene72807:CDS |
| AAATAGCCTCGGCAAGCTGC+CGG | 0.555959 | 5.1:-17183165 | None:intergenic |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 5.1:+17180355 | MS.gene72807:CDS |
| CGAGCGTGCTAGGAGTGTGC+AGG | 0.557294 | 5.1:+17181477 | MS.gene72807:CDS |
| AGTTGCTGGAGACAAGAAGA+AGG | 0.557374 | 5.1:+17183237 | MS.gene72807:CDS |
| ATAGGCTAGGAGGTTACGTC+GGG | 0.559517 | 5.1:+17181393 | MS.gene72807:intron |
| TTTAGGCAAGCCCAGGCTCA+AGG | 0.561956 | 5.1:+17183502 | MS.gene72807:CDS |
| CTAAGACTAACCCTCAATCA+TGG | 0.562434 | 5.1:+17183322 | MS.gene72807:CDS |
| GGTATGGTGCCAAAATATCC+AGG | 0.563962 | 5.1:-17180373 | None:intergenic |
| ACAAGAAAATGTGGTTGAAG+AGG | 0.567814 | 5.1:+17180609 | MS.gene72807:CDS |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 5.1:+17180137 | MS.gene72807:CDS |
| GTAACTTGGCTGCTAACTAC+CGG | 0.570124 | 5.1:+17183278 | MS.gene72807:CDS |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 5.1:-17181109 | None:intergenic |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.572703 | 5.1:+17180247 | MS.gene72807:CDS |
| TACCGGATAAGGGTCAACAT+TGG | 0.575351 | 5.1:-17183557 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 5.1:+17181176 | MS.gene72807:CDS |
| TAGTGTAGCTGCTCCTGCGA+CGG | 0.577442 | 5.1:+17180291 | MS.gene72807:CDS |
| AGCAAAGAAGAACCGGGCGT+CGG | 0.582886 | 5.1:+17181221 | MS.gene72807:CDS |
| CAAGAAAATGTGGTTGAAGA+GGG | 0.585597 | 5.1:+17180610 | MS.gene72807:CDS |
| TTGAACAGGAGGAGTATGAC+CGG | 0.586858 | 5.1:+17183146 | MS.gene72807:intron |
| CTAACCCTCAATCATGGTGA+AGG | 0.587704 | 5.1:+17183328 | MS.gene72807:CDS |
| ATGAAAGCTCGGAGGAAGGA+AGG | 0.588058 | 5.1:-17180407 | None:intergenic |
| CTTAGTGGACGCAGCGACAG+AGG | 0.588697 | 5.1:+17180171 | MS.gene72807:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 5.1:-17180709 | None:intergenic |
| AGAGCAATTAACACAACAGA+TGG | 0.589765 | 5.1:+17183411 | MS.gene72807:CDS |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 5.1:-17180340 | None:intergenic |
| GAAACCTAATGGAAAGAGCA+AGG | 0.595131 | 5.1:+17180120 | MS.gene72807:CDS |
| TATGGTGGTAAATGAAAGCT+CGG | 0.597302 | 5.1:-17180418 | None:intergenic |
| CTTGTGACAAATAGGCTAGG+AGG | 0.600406 | 5.1:+17181383 | MS.gene72807:intron |
| AAGCGGCGCACTAGTGTGGG+AGG | 0.600468 | 5.1:-17183527 | None:intergenic |
| GTATGACCGGCAGCTTGCCG+AGG | 0.601524 | 5.1:+17183159 | MS.gene72807:CDS |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 5.1:+17180694 | MS.gene72807:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 5.1:+17181215 | MS.gene72807:CDS |
| GAGAATCTCTCAGATAATCC+GGG | 0.611014 | 5.1:-17180666 | None:intergenic |
| CAGACCAAGTGTTCTTGGGA+AGG | 0.615925 | 5.1:+17181012 | MS.gene72807:intron |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 5.1:+17181097 | MS.gene72807:CDS |
| ACCAATTGATCAAAGATAGG+CGG | 0.621825 | 5.1:-17181156 | None:intergenic |
| AAATATCCAGGATGTACTGG+AGG | 0.622903 | 5.1:-17180361 | None:intergenic |
| CTTGGCTGCTAACTACCGGA+AGG | 0.625442 | 5.1:+17183282 | MS.gene72807:CDS |
| CTTCTAGCCAGGGATCACCT+GGG | 0.625749 | 5.1:+17180257 | MS.gene72807:CDS |
| GTAAATGAAAGCTCGGAGGA+AGG | 0.630697 | 5.1:-17180411 | None:intergenic |
| GTTGCTGGAGACAAGAAGAA+GGG | 0.632114 | 5.1:+17183238 | MS.gene72807:CDS |
| AATAGGCTAGGAGGTTACGT+CGG | 0.632889 | 5.1:+17181392 | MS.gene72807:intron |
| TTGGAAGATATATGGTGATG+TGG | 0.635278 | 5.1:+17180864 | MS.gene72807:CDS |
| AATGTGGTTGAAGAGGGTGG+TGG | 0.635912 | 5.1:+17180616 | MS.gene72807:CDS |
| GGAAGGAAGGTCCCATAAGG+AGG | 0.636273 | 5.1:-17180394 | None:intergenic |
| TAACCCTCAATCATGGTGAA+GGG | 0.637969 | 5.1:+17183329 | MS.gene72807:CDS |
| TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 5.1:-17180433 | None:intergenic |
| TAGATGCAGTAGAAATGACA+TGG | 0.638297 | 5.1:-17180210 | None:intergenic |
| AAACCTAATGGAAAGAGCAA+GGG | 0.642664 | 5.1:+17180121 | MS.gene72807:CDS |
| ACACTAGCCTGGGAGGACCC+AGG | 0.643294 | 5.1:-17180274 | None:intergenic |
| AGACCCATTAGAAATAGCCT+CGG | 0.644902 | 5.1:-17183176 | None:intergenic |
| GAAAATGTGGTTGAAGAGGG+TGG | 0.649938 | 5.1:+17180613 | MS.gene72807:CDS |
| ACTGGTGGTTGCTTAAGCAA+CGG | 0.650281 | 5.1:+17181264 | MS.gene72807:CDS |
| CGTCAGCTCAGGCTGCTGGG+AGG | 0.651312 | 5.1:-17183353 | None:intergenic |
| ACAACAGATGGCAAGTCAAG+CGG | 0.653147 | 5.1:+17183423 | MS.gene72807:CDS |
| TCAACATTGGGACTTAAAAG+CGG | 0.653227 | 5.1:-17183544 | None:intergenic |
| AGCGGCGCACTAGTGTGGGA+GGG | 0.654626 | 5.1:-17183526 | None:intergenic |
| ACAGCCCCAACAAGAAAATG+TGG | 0.655182 | 5.1:+17180600 | MS.gene72807:CDS |
| AGCAGCTACACTAGCCTGGG+AGG | 0.655945 | 5.1:-17180281 | None:intergenic |
| TTGGCTGCTAACTACCGGAA+GGG | 0.659168 | 5.1:+17183283 | MS.gene72807:CDS |
| GGAGGATGCATTCACACTGG+TGG | 0.660778 | 5.1:+17181249 | MS.gene72807:CDS |
| ACGCTCGTCGCAGTATTGGT+CGG | 0.662923 | 5.1:-17181461 | None:intergenic |
| AACCGGGCGTCGGAAAAGGG+AGG | 0.663571 | 5.1:+17181231 | MS.gene72807:CDS |
| AAGGGAGGATGCATTCACAC+TGG | 0.674246 | 5.1:+17181246 | MS.gene72807:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.680869 | 5.1:-17180360 | None:intergenic |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 5.1:-17180346 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+CGG | 0.767887 | 5.1:-17181141 | None:intergenic |
| GGTGGTAAATGAAAGCTCGG+AGG | 0.772025 | 5.1:-17180415 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.777205 | 5.1:+17181118 | MS.gene72807:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAAAATTAAATGATA+TGG | - | chr5.1:17181338-17181357 | None:intergenic | 10.0% |
| !!! | TTTTGATAATAAACAAAATA+AGG | - | chr5.1:17183039-17183058 | None:intergenic | 10.0% |
| !!! | AAAATTGAGGATTTTATAAA+AGG | + | chr5.1:17181948-17181967 | MS.gene72807:intron | 15.0% |
| !!! | TATTTTGTTATTATTTGAAC+AGG | + | chr5.1:17183132-17183151 | MS.gene72807:intron | 15.0% |
| !! | AATTCGGATTAAAAAAAATG+TGG | - | chr5.1:17181592-17181611 | None:intergenic | 20.0% |
| !! | CAGTAAAAATGAAATTGATA+TGG | - | chr5.1:17182199-17182218 | None:intergenic | 20.0% |
| !! | TATAAAGATTAAGAACACAT+TGG | - | chr5.1:17182866-17182885 | None:intergenic | 20.0% |
| !! | TGAAAAATTTGAGAAAAATC+AGG | + | chr5.1:17182108-17182127 | MS.gene72807:intron | 20.0% |
| !!! | AAGCCTTATAATATCTATTT+AGG | - | chr5.1:17182562-17182581 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAATCCGAATTG+TGG | + | chr5.1:17181593-17181612 | MS.gene72807:intron | 20.0% |
| !!! | TTTTATTTCTTGTGACAAAT+AGG | + | chr5.1:17181375-17181394 | MS.gene72807:intron | 20.0% |
| ! | AAAATATTTAAGGACAGAAC+TGG | - | chr5.1:17183118-17183137 | None:intergenic | 25.0% |
| ! | AAGGAAACTAATCATAAGAA+TGG | - | chr5.1:17183020-17183039 | None:intergenic | 25.0% |
| ! | ACAAATTCATAAGCAATAAC+AGG | - | chr5.1:17182434-17182453 | None:intergenic | 25.0% |
| ! | CAAATTCATAAGCAATAACA+GGG | - | chr5.1:17182433-17182452 | None:intergenic | 25.0% |
| ! | GAAAACTATATAGAATCAAG+TGG | - | chr5.1:17182777-17182796 | None:intergenic | 25.0% |
| ! | GCTTTATCTATTTCATTTCT+AGG | + | chr5.1:17183625-17183644 | MS.gene72807:intron | 25.0% |
| ! | TAAGACTTATGATAAAACTC+TGG | - | chr5.1:17182045-17182064 | None:intergenic | 25.0% |
| ! | TGATCAATTGGTTAAGTATT+GGG | + | chr5.1:17181167-17181186 | MS.gene72807:CDS | 25.0% |
| ! | TGGCCTAAATAGATATTATA+AGG | + | chr5.1:17182556-17182575 | MS.gene72807:intron | 25.0% |
| ! | TTAACCAATTGATCAAAGAT+AGG | - | chr5.1:17181162-17181181 | None:intergenic | 25.0% |
| ! | TTGATCAATTGGTTAAGTAT+TGG | + | chr5.1:17181166-17181185 | MS.gene72807:CDS | 25.0% |
| ! | TTTGTCAATCTAATGAAATG+AGG | + | chr5.1:17181914-17181933 | MS.gene72807:intron | 25.0% |
| !! | TAGAATTTAGAACTTATCAC+AGG | + | chr5.1:17182831-17182850 | MS.gene72807:intron | 25.0% |
| !!! | GCTTTTTGAAAGAATAGAAA+AGG | + | chr5.1:17182157-17182176 | MS.gene72807:intron | 25.0% |
| !!! | TGCACTATTTTTTTTAAGTG+TGG | + | chr5.1:17181640-17181659 | MS.gene72807:intron | 25.0% |
| !!! | TTTGTTATTATTTGAACAGG+AGG | + | chr5.1:17183135-17183154 | MS.gene72807:intron | 25.0% |
| AAAACTGACTACTAAGGTAA+GGG | - | chr5.1:17182591-17182610 | None:intergenic | 30.0% | |
| AAAGTCGATTAAAATTACCG+CGG | - | chr5.1:17182389-17182408 | None:intergenic | 30.0% | |
| AACATAAGTATCACAAGAGT+AGG | - | chr5.1:17183692-17183711 | None:intergenic | 30.0% | |
| AAGACTCATAAGTCAACATT+AGG | - | chr5.1:17182344-17182363 | None:intergenic | 30.0% | |
| AATAACAGAGAAACAGTGTA+AGG | - | chr5.1:17183088-17183107 | None:intergenic | 30.0% | |
| AATGACAAACAAGACAAAAC+TGG | - | chr5.1:17181567-17181586 | None:intergenic | 30.0% | |
| ACGACAAAACACACAAAAAT+AGG | + | chr5.1:17181437-17181456 | MS.gene72807:CDS | 30.0% | |
| ATGATAGCAGTTATGAATGA+TGG | - | chr5.1:17180839-17180858 | None:intergenic | 30.0% | |
| CATTACATAGCTCAATTCTT+CGG | - | chr5.1:17182265-17182284 | None:intergenic | 30.0% | |
| GGTTTCTGTCAAAAAAATTG+AGG | + | chr5.1:17181935-17181954 | MS.gene72807:intron | 30.0% | |
| TGATGAGGATTGAAGTTTAT+TGG | + | chr5.1:17183603-17183622 | MS.gene72807:intron | 30.0% | |
| TGTGAATTATGATCGATTGT+TGG | + | chr5.1:17181995-17182014 | MS.gene72807:intron | 30.0% | |
| TGTTGTTGAATTTCTCTGTT+TGG | + | chr5.1:17182217-17182236 | MS.gene72807:intron | 30.0% | |
| TTATGATAAAACTCTGGTGA+GGG | - | chr5.1:17182039-17182058 | None:intergenic | 30.0% | |
| TTTGTGTTATAGATGTCTTG+CGG | + | chr5.1:17182449-17182468 | MS.gene72807:intron | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | + | chr5.1:17180845-17180864 | MS.gene72807:CDS | 30.0% |
| ! | ATTTCTAGGTCTGTAATTTG+GGG | + | chr5.1:17183639-17183658 | MS.gene72807:intron | 30.0% |
| ! | CATTTCTAGGTCTGTAATTT+GGG | + | chr5.1:17183638-17183657 | MS.gene72807:intron | 30.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | + | chr5.1:17180648-17180667 | MS.gene72807:CDS | 30.0% |
| ! | TCATTTCTAGGTCTGTAATT+TGG | + | chr5.1:17183637-17183656 | MS.gene72807:intron | 30.0% |
| ! | TTCAACCACATTTTCTTGTT+GGG | - | chr5.1:17180608-17180627 | None:intergenic | 30.0% |
| ! | TTTGATGATACGAAACTGAA+CGG | + | chr5.1:17181687-17181706 | MS.gene72807:intron | 30.0% |
| ! | TTTTCTTGCAATCACATAAC+AGG | - | chr5.1:17182954-17182973 | None:intergenic | 30.0% |
| !! | CATCACTTTTGGAAGATATA+TGG | + | chr5.1:17180856-17180875 | MS.gene72807:CDS | 30.0% |
| !!! | AACTTTTTTCCAAGTGTTGA+AGG | - | chr5.1:17183221-17183240 | None:intergenic | 30.0% |
| AAACCTAATGGAAAGAGCAA+GGG | + | chr5.1:17180121-17180140 | MS.gene72807:CDS | 35.0% | |
| AACACTTGGAAAAAAGTTGC+TGG | + | chr5.1:17183223-17183242 | MS.gene72807:CDS | 35.0% | |
| AACCTACTGCCTTAATTGTA+TGG | + | chr5.1:17181883-17181902 | MS.gene72807:intron | 35.0% | |
| AAGAAGAAGGGAAAGCTATA+CGG | + | chr5.1:17183250-17183269 | MS.gene72807:CDS | 35.0% | |
| AAGATTAAGAACACATTGGC+TGG | - | chr5.1:17182862-17182881 | None:intergenic | 35.0% | |
| ACAAGAAAATGTGGTTGAAG+AGG | + | chr5.1:17180609-17180628 | MS.gene72807:CDS | 35.0% | |
| ACCAATTGATCAAAGATAGG+CGG | - | chr5.1:17181159-17181178 | None:intergenic | 35.0% | |
| AGAGCAATTAACACAACAGA+TGG | + | chr5.1:17183411-17183430 | MS.gene72807:CDS | 35.0% | |
| AGCATCAGACCATACAATTA+AGG | - | chr5.1:17181895-17181914 | None:intergenic | 35.0% | |
| ATCTCAAGAGTTGCATCTTT+AGG | - | chr5.1:17182070-17182089 | None:intergenic | 35.0% | |
| ATTCTTTGACCTTCAACACT+TGG | + | chr5.1:17183209-17183228 | MS.gene72807:CDS | 35.0% | |
| CAAAACTGACTACTAAGGTA+AGG | - | chr5.1:17182592-17182611 | None:intergenic | 35.0% | |
| CAACACAAAACTGACTACTA+AGG | - | chr5.1:17182597-17182616 | None:intergenic | 35.0% | |
| CAAGAAAATGTGGTTGAAGA+GGG | + | chr5.1:17180610-17180629 | MS.gene72807:CDS | 35.0% | |
| CGAAGAATTGAGCTATGTAA+TGG | + | chr5.1:17182263-17182282 | MS.gene72807:intron | 35.0% | |
| CTTATGATAAAACTCTGGTG+AGG | - | chr5.1:17182040-17182059 | None:intergenic | 35.0% | |
| GGCAAGTTGTAATTGCTTAT+AGG | - | chr5.1:17182928-17182947 | None:intergenic | 35.0% | |
| TAGATGCAGTAGAAATGACA+TGG | - | chr5.1:17180213-17180232 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGAAAGCT+CGG | - | chr5.1:17180421-17180440 | None:intergenic | 35.0% | |
| TCAACATTGGGACTTAAAAG+CGG | - | chr5.1:17183547-17183566 | None:intergenic | 35.0% | |
| TCGTGAAGCTCGTTAATAAA+CGG | - | chr5.1:17181421-17181440 | None:intergenic | 35.0% | |
| TTAATTGCTCTTGCGTCAAA+CGG | - | chr5.1:17183402-17183421 | None:intergenic | 35.0% | |
| TTGCAATCACATAACAGGTT+TGG | - | chr5.1:17182949-17182968 | None:intergenic | 35.0% | |
| TTGCTCTTTCCATTAGGTTT+CGG | - | chr5.1:17180121-17180140 | None:intergenic | 35.0% | |
| TTTCTTGTGACAAATAGGCT+AGG | + | chr5.1:17181380-17181399 | MS.gene72807:intron | 35.0% | |
| ! | AAGATTTGCTTAACCGTCAA+AGG | + | chr5.1:17183455-17183474 | MS.gene72807:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | + | chr5.1:17180887-17180906 | MS.gene72807:CDS | 35.0% |
| ! | CTTCAACCACATTTTCTTGT+TGG | - | chr5.1:17180609-17180628 | None:intergenic | 35.0% |
| ! | GTAGGAATAGCTAAGAGTAT+TGG | + | chr5.1:17181831-17181850 | MS.gene72807:intron | 35.0% |
| ! | TCAACCACATTTTCTTGTTG+GGG | - | chr5.1:17180607-17180626 | None:intergenic | 35.0% |
| ! | TTGGAAGATATATGGTGATG+TGG | + | chr5.1:17180864-17180883 | MS.gene72807:CDS | 35.0% |
| !! | AGAGTATTGGCTCCAAAAAT+TGG | + | chr5.1:17181844-17181863 | MS.gene72807:intron | 35.0% |
| !! | ATGATTGAGGGTTAGTCTTA+GGG | - | chr5.1:17183323-17183342 | None:intergenic | 35.0% |
| !! | ATTTGTTGTTGGGAAAAAGG+TGG | - | chr5.1:17180505-17180524 | None:intergenic | 35.0% |
| !! | CGACTTTGTTGATTCTTACA+AGG | + | chr5.1:17182402-17182421 | MS.gene72807:intron | 35.0% |
| !! | CTTAGTAGTCAGTTTTGTGT+TGG | + | chr5.1:17182595-17182614 | MS.gene72807:intron | 35.0% |
| !! | GAGTATTGGCTCCAAAAATT+GGG | + | chr5.1:17181845-17181864 | MS.gene72807:intron | 35.0% |
| !! | TTTGTTGTTGGGAAAAAGGT+GGG | - | chr5.1:17180504-17180523 | None:intergenic | 35.0% |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | + | chr5.1:17181539-17181558 | MS.gene72807:intron | 35.0% |
| !!! | TGGTGGATTTTGTTGTTGTT+GGG | - | chr5.1:17180554-17180573 | None:intergenic | 35.0% |
| AAATATCCAGGATGTACTGG+AGG | - | chr5.1:17180364-17180383 | None:intergenic | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | - | chr5.1:17180363-17180382 | None:intergenic | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | + | chr5.1:17181008-17181027 | MS.gene72807:intron | 40.0% | |
| ACAAGAGTAGGAATTGTGCT+CGG | - | chr5.1:17183680-17183699 | None:intergenic | 40.0% | |
| ACAATTAAGGCAGTAGGTTC+TGG | - | chr5.1:17181882-17181901 | None:intergenic | 40.0% | |
| AGACCCATTAGAAATAGCCT+CGG | - | chr5.1:17183179-17183198 | None:intergenic | 40.0% | |
| ATAGTGCACAGACCACAATT+CGG | - | chr5.1:17181608-17181627 | None:intergenic | 40.0% | |
| ATTTAAGGACAGAACTGGCA+AGG | - | chr5.1:17183113-17183132 | None:intergenic | 40.0% | |
| CAATTAAGGCAGTAGGTTCT+GGG | - | chr5.1:17181881-17181900 | None:intergenic | 40.0% | |
| CAGTAGAAATGACATGGATC+GGG | - | chr5.1:17180207-17180226 | None:intergenic | 40.0% | |
| CCAAAATATCCAGGATGTAC+TGG | - | chr5.1:17180367-17180386 | None:intergenic | 40.0% | |
| CCAATTGATCAAAGATAGGC+GGG | - | chr5.1:17181158-17181177 | None:intergenic | 40.0% | |
| CGAGAATCTCTCAGATAATC+CGG | - | chr5.1:17180670-17180689 | None:intergenic | 40.0% | |
| CTAAGACTAACCCTCAATCA+TGG | + | chr5.1:17183322-17183341 | MS.gene72807:CDS | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | + | chr5.1:17180120-17180139 | MS.gene72807:CDS | 40.0% | |
| GAAGGTGATGAATGATACAG+AGG | - | chr5.1:17182488-17182507 | None:intergenic | 40.0% | |
| GACCATACAATTAAGGCAGT+AGG | - | chr5.1:17181888-17181907 | None:intergenic | 40.0% | |
| GAGAATCTCTCAGATAATCC+GGG | - | chr5.1:17180669-17180688 | None:intergenic | 40.0% | |
| GCAGTAGAAATGACATGGAT+CGG | - | chr5.1:17180208-17180227 | None:intergenic | 40.0% | |
| TAACCCTCAATCATGGTGAA+GGG | + | chr5.1:17183329-17183348 | MS.gene72807:CDS | 40.0% | |
| TAACCGTCAAAGGTCATATG+AGG | + | chr5.1:17183465-17183484 | MS.gene72807:CDS | 40.0% | |
| TAATGCAGACCAAGTGTTCT+TGG | + | chr5.1:17181007-17181026 | MS.gene72807:intron | 40.0% | |
| TCTATTTAGGCCATGTCTCT+AGG | - | chr5.1:17182549-17182568 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | - | chr5.1:17180712-17180731 | None:intergenic | 40.0% | |
| TGTCTCTAGGCAATGAAGAA+CGG | - | chr5.1:17182536-17182555 | None:intergenic | 40.0% | |
| TTAAAATTACCGCGGACAGA+TGG | - | chr5.1:17182381-17182400 | None:intergenic | 40.0% | |
| TTCTTCATTGCCTAGAGACA+TGG | + | chr5.1:17182536-17182555 | MS.gene72807:intron | 40.0% | |
| ! | ATTGGCTCCAAAAATTGGGT+GGG | + | chr5.1:17181849-17181868 | MS.gene72807:intron | 40.0% |
| ! | CAGATTTTTGCCTTGCAAAC+CGG | + | chr5.1:17180795-17180814 | MS.gene72807:intron | 40.0% |
| ! | CCAGTACATCCTGGATATTT+TGG | + | chr5.1:17180364-17180383 | MS.gene72807:CDS | 40.0% |
| ! | CTTGTCGTATCTCTCACTTT+TGG | + | chr5.1:17181504-17181523 | MS.gene72807:intron | 40.0% |
| ! | GACATTTCCCACCCAATTTT+TGG | - | chr5.1:17181859-17181878 | None:intergenic | 40.0% |
| ! | TGTGGTAAGCTTTAGCTCAA+GGG | + | chr5.1:17181658-17181677 | MS.gene72807:intron | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | + | chr5.1:17180893-17180912 | MS.gene72807:CDS | 40.0% |
| !! | ATTTGTTGTTGTTGGGGAAG+GGG | - | chr5.1:17180466-17180485 | None:intergenic | 40.0% |
| !! | CATGATTGAGGGTTAGTCTT+AGG | - | chr5.1:17183324-17183343 | None:intergenic | 40.0% |
| !! | CGGATTTGTTGTTGGGAAAA+AGG | - | chr5.1:17180508-17180527 | None:intergenic | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+GGG | - | chr5.1:17180467-17180486 | None:intergenic | 40.0% |
| !! | TATTGGCTCCAAAAATTGGG+TGG | + | chr5.1:17181848-17181867 | MS.gene72807:intron | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr5.1:17180473-17180492 | None:intergenic | 40.0% |
| !! | TTGCCGAGGCTATTTCTAAT+GGG | + | chr5.1:17183173-17183192 | MS.gene72807:CDS | 40.0% |
| !! | TTGTGGACGGATTTGTTGTT+GGG | - | chr5.1:17180515-17180534 | None:intergenic | 40.0% |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr5.1:17180439-17180458 | None:intergenic | 40.0% |
| !!! | GAAAAAGGTGGGTTTTGTTG+TGG | - | chr5.1:17180493-17180512 | None:intergenic | 40.0% |
| !!! | GGTGGATTTTGTTGTTGTTG+GGG | - | chr5.1:17180553-17180572 | None:intergenic | 40.0% |
| !!! | GTGGTGGATTTTGTTGTTGT+TGG | - | chr5.1:17180555-17180574 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr5.1:17180581-17180600 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | - | chr5.1:17180574-17180593 | None:intergenic | 40.0% |
| AAGGGAAAGCTATACGGTCT+TGG | + | chr5.1:17183256-17183275 | MS.gene72807:CDS | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | + | chr5.1:17181392-17181411 | MS.gene72807:intron | 45.0% | |
| ACAACAGATGGCAAGTCAAG+CGG | + | chr5.1:17183423-17183442 | MS.gene72807:CDS | 45.0% | |
| ACAGCCCCAACAAGAAAATG+TGG | + | chr5.1:17180600-17180619 | MS.gene72807:CDS | 45.0% | |
| ACCGGATAAGGGTCAACATT+GGG | - | chr5.1:17183559-17183578 | None:intergenic | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | + | chr5.1:17181264-17181283 | MS.gene72807:CDS | 45.0% | |
| AGTTGCTGGAGACAAGAAGA+AGG | + | chr5.1:17183237-17183256 | MS.gene72807:CDS | 45.0% | |
| CCCGCCTATCTTTGATCAAT+TGG | + | chr5.1:17181155-17181174 | MS.gene72807:CDS | 45.0% | |
| CCGACAAAGCAAAGAAGAAC+CGG | + | chr5.1:17181214-17181233 | MS.gene72807:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | - | chr5.1:17181217-17181236 | None:intergenic | 45.0% | |
| CCTTCATCATGACACGTTAG+CGG | + | chr5.1:17182503-17182522 | MS.gene72807:intron | 45.0% | |
| CGACAAAGCAAAGAAGAACC+GGG | + | chr5.1:17181215-17181234 | MS.gene72807:CDS | 45.0% | |
| CGATTCATCTTAAGGCCTAG+TGG | + | chr5.1:17180694-17180713 | MS.gene72807:CDS | 45.0% | |
| CTAACCCTCAATCATGGTGA+AGG | + | chr5.1:17183328-17183347 | MS.gene72807:CDS | 45.0% | |
| CTCTTTCCATTAGGTTTCGG+AGG | - | chr5.1:17180118-17180137 | None:intergenic | 45.0% | |
| CTTGTGACAAATAGGCTAGG+AGG | + | chr5.1:17181383-17181402 | MS.gene72807:intron | 45.0% | |
| GAAAATGTGGTTGAAGAGGG+TGG | + | chr5.1:17180613-17180632 | MS.gene72807:CDS | 45.0% | |
| GATAAAACTCTGGTGAGGGA+AGG | - | chr5.1:17182035-17182054 | None:intergenic | 45.0% | |
| GCGGTATAATACGCACTTAG+TGG | + | chr5.1:17180156-17180175 | MS.gene72807:CDS | 45.0% | |
| GCTCCTCATATGACCTTTGA+CGG | - | chr5.1:17183471-17183490 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | + | chr5.1:17181118-17181137 | MS.gene72807:CDS | 45.0% | |
| GTAAATGAAAGCTCGGAGGA+AGG | - | chr5.1:17180414-17180433 | None:intergenic | 45.0% | |
| GTAACTTGGCTGCTAACTAC+CGG | + | chr5.1:17183278-17183297 | MS.gene72807:CDS | 45.0% | |
| GTTGCTGGAGACAAGAAGAA+GGG | + | chr5.1:17183238-17183257 | MS.gene72807:CDS | 45.0% | |
| TACCGGATAAGGGTCAACAT+TGG | - | chr5.1:17183560-17183579 | None:intergenic | 45.0% | |
| TACTTAGAAGAGCCCGTATG+CGG | + | chr5.1:17181097-17181116 | MS.gene72807:CDS | 45.0% | |
| TAGATGTCTTGCGGCAACTT+TGG | + | chr5.1:17182458-17182477 | MS.gene72807:intron | 45.0% | |
| TCATCATCCTCCTCATCTAC+CGG | - | chr5.1:17183577-17183596 | None:intergenic | 45.0% | |
| TCCCAATGTTGACCCTTATC+CGG | + | chr5.1:17183555-17183574 | MS.gene72807:CDS | 45.0% | |
| TTGATGCAACACTACCCTTC+CGG | - | chr5.1:17183300-17183319 | None:intergenic | 45.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | - | chr5.1:17180127-17180146 | None:intergenic | 45.0% | |
| TTGGCACCATACCTCCTTAT+GGG | + | chr5.1:17180383-17180402 | MS.gene72807:CDS | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | - | chr5.1:17181113-17181132 | None:intergenic | 45.0% | |
| TTGTGATATCAGCAGCAACG+AGG | - | chr5.1:17182289-17182308 | None:intergenic | 45.0% | |
| TTTGGCACCATACCTCCTTA+TGG | + | chr5.1:17180382-17180401 | MS.gene72807:CDS | 45.0% | |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | - | chr5.1:17180601-17180620 | None:intergenic | 45.0% |
| ! | GCTATACGGTCTTGGTAACT+TGG | + | chr5.1:17183264-17183283 | MS.gene72807:CDS | 45.0% |
| ! | GGATGATGAGGATGATGATG+AGG | + | chr5.1:17183588-17183607 | MS.gene72807:intron | 45.0% |
| ! | GGTATGGTGCCAAAATATCC+AGG | - | chr5.1:17180376-17180395 | None:intergenic | 45.0% |
| ! | GTGTGGTAAGCTTTAGCTCA+AGG | + | chr5.1:17181657-17181676 | MS.gene72807:intron | 45.0% |
| ! | GTTGTTGTTGGGGAACATGT+GGG | - | chr5.1:17180543-17180562 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGGGGAACATG+TGG | - | chr5.1:17180544-17180563 | None:intergenic | 45.0% |
| ! | TTGAACAGGAGGAGTATGAC+CGG | + | chr5.1:17183146-17183165 | MS.gene72807:intron | 45.0% |
| !! | CTCGTCGTCGATTCATCTTA+AGG | + | chr5.1:17180686-17180705 | MS.gene72807:CDS | 45.0% |
| !! | CTTGCCGAGGCTATTTCTAA+TGG | + | chr5.1:17183172-17183191 | MS.gene72807:CDS | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr5.1:17180472-17180491 | None:intergenic | 45.0% |
| !! | GGATTTGTTGTTGTTGGGGA+AGG | - | chr5.1:17180468-17180487 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr5.1:17180474-17180493 | None:intergenic | 45.0% |
| !! | GTTGCAGCTCATAGTCTTGT+AGG | + | chr5.1:17181813-17181832 | MS.gene72807:intron | 45.0% |
| !! | GTTGTGGACGGATTTGTTGT+TGG | - | chr5.1:17180516-17180535 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | - | chr5.1:17180490-17180509 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | - | chr5.1:17180489-17180508 | None:intergenic | 45.0% |
| !!! | CATGTGGGTTTTGTTGTGGA+CGG | - | chr5.1:17180528-17180547 | None:intergenic | 45.0% |
| !!! | GGAACATGTGGGTTTTGTTG+TGG | - | chr5.1:17180532-17180551 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr5.1:17180580-17180599 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr5.1:17180582-17180601 | None:intergenic | 45.0% |
| !! | AAATAATAACAAAATATTTA+AGG | - | chr5.1:17183128-17183147 | None:intergenic | 5.0% |
| AAGGGAGGATGCATTCACAC+TGG | + | chr5.1:17181246-17181265 | MS.gene72807:CDS | 50.0% | |
| AAGGTCATATGAGGAGCAGC+TGG | + | chr5.1:17183474-17183493 | MS.gene72807:CDS | 50.0% | |
| AATGTGGTTGAAGAGGGTGG+TGG | + | chr5.1:17180616-17180635 | MS.gene72807:CDS | 50.0% | |
| AATTACCGCGGACAGATGGT+TGG | - | chr5.1:17182377-17182396 | None:intergenic | 50.0% | |
| AGGACCCTTCACCATGATTG+AGG | - | chr5.1:17183336-17183355 | None:intergenic | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | + | chr5.1:17181393-17181412 | MS.gene72807:intron | 50.0% | |
| ATCTGCTGCATCTTCTAGCC+AGG | + | chr5.1:17180246-17180265 | MS.gene72807:CDS | 50.0% | |
| ATGAAAGCTCGGAGGAAGGA+AGG | - | chr5.1:17180410-17180429 | None:intergenic | 50.0% | |
| CACACCTTCCCAAGAACACT+TGG | - | chr5.1:17181019-17181038 | None:intergenic | 50.0% | |
| CAGACCAAGTGTTCTTGGGA+AGG | + | chr5.1:17181012-17181031 | MS.gene72807:intron | 50.0% | |
| CCGCTAACGTGTCATGATGA+AGG | - | chr5.1:17182506-17182525 | None:intergenic | 50.0% | |
| CCTCCTCATCTACCGGATAA+GGG | - | chr5.1:17183570-17183589 | None:intergenic | 50.0% | |
| GAAGGTCCCATAAGGAGGTA+TGG | - | chr5.1:17180392-17180411 | None:intergenic | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | - | chr5.1:17180817-17180836 | None:intergenic | 50.0% | |
| GGACCCTTCACCATGATTGA+GGG | - | chr5.1:17183335-17183354 | None:intergenic | 50.0% | |
| GGTAGATGAGGAGGATGATG+AGG | + | chr5.1:17183576-17183595 | MS.gene72807:intron | 50.0% | |
| GGTGGTAAATGAAAGCTCGG+AGG | - | chr5.1:17180418-17180437 | None:intergenic | 50.0% | |
| TAAAAGCGGCGCACTAGTGT+GGG | - | chr5.1:17183533-17183552 | None:intergenic | 50.0% | |
| TCCTCCTCATCTACCGGATA+AGG | - | chr5.1:17183571-17183590 | None:intergenic | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | + | chr5.1:17180247-17180266 | MS.gene72807:CDS | 50.0% | |
| TCTGGTGAGGGAAGGAGTTA+GGG | - | chr5.1:17182027-17182046 | None:intergenic | 50.0% | |
| TGAATAAGCTCCCGCATCTC+TGG | - | chr5.1:17183379-17183398 | None:intergenic | 50.0% | |
| TGACCCTTATCCGGTAGATG+AGG | + | chr5.1:17183564-17183583 | MS.gene72807:intron | 50.0% | |
| TGTCTCCTCAAACCGCATAC+GGG | - | chr5.1:17181112-17181131 | None:intergenic | 50.0% | |
| TTAAAAGCGGCGCACTAGTG+TGG | - | chr5.1:17183534-17183553 | None:intergenic | 50.0% | |
| TTGGCTGCTAACTACCGGAA+GGG | + | chr5.1:17183283-17183302 | MS.gene72807:CDS | 50.0% | |
| TTTCTTGTTGGGGCTGTGGT+GGG | - | chr5.1:17180597-17180616 | None:intergenic | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | - | chr5.1:17180349-17180368 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | - | chr5.1:17180350-17180369 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr5.1:17180436-17180455 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | - | chr5.1:17180571-17180590 | None:intergenic | 50.0% |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | - | chr5.1:17180598-17180617 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | - | chr5.1:17180450-17180469 | None:intergenic | 50.0% |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | + | chr5.1:17181176-17181195 | MS.gene72807:CDS | 50.0% |
| AAATAGCCTCGGCAAGCTGC+CGG | - | chr5.1:17183168-17183187 | None:intergenic | 55.0% | |
| AAGAGCCCGTATGCGGTTTG+AGG | + | chr5.1:17181104-17181123 | MS.gene72807:CDS | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | + | chr5.1:17181467-17181486 | MS.gene72807:CDS | 55.0% | |
| AGAAAGCGGCCGCATTGGAT+TGG | + | chr5.1:17181132-17181151 | MS.gene72807:CDS | 55.0% | |
| AGACAAGAAAGCGGCCGCAT+TGG | + | chr5.1:17181127-17181146 | MS.gene72807:CDS | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | + | chr5.1:17181221-17181240 | MS.gene72807:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+CGG | - | chr5.1:17181144-17181163 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | + | chr5.1:17180355-17180374 | MS.gene72807:CDS | 55.0% | |
| CCCTTATCCGGTAGATGAGG+AGG | + | chr5.1:17183567-17183586 | MS.gene72807:intron | 55.0% | |
| CTCCATGCTCAGATCAGACG+CGG | - | chr5.1:17182633-17182652 | None:intergenic | 55.0% | |
| CTCTGGTGAGGGAAGGAGTT+AGG | - | chr5.1:17182028-17182047 | None:intergenic | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | + | chr5.1:17180257-17180276 | MS.gene72807:CDS | 55.0% | |
| CTTGGCTGCTAACTACCGGA+AGG | + | chr5.1:17183282-17183301 | MS.gene72807:CDS | 55.0% | |
| GAAAGAGCAAGGGCAACAGC+AGG | + | chr5.1:17180131-17180150 | MS.gene72807:CDS | 55.0% | |
| GGAAGGAAGGTCCCATAAGG+AGG | - | chr5.1:17180397-17180416 | None:intergenic | 55.0% | |
| GGAGGAAGGAAGGTCCCATA+AGG | - | chr5.1:17180400-17180419 | None:intergenic | 55.0% | |
| GGAGGATGCATTCACACTGG+TGG | + | chr5.1:17181249-17181268 | MS.gene72807:CDS | 55.0% | |
| GGGCACATGTAAGTGGGATG+AGG | - | chr5.1:17180343-17180362 | None:intergenic | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | - | chr5.1:17181468-17181487 | None:intergenic | 55.0% | |
| TAGTGTAGCTGCTCCTGCGA+CGG | + | chr5.1:17180291-17180310 | MS.gene72807:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | + | chr5.1:17180256-17180275 | MS.gene72807:CDS | 55.0% | |
| TGCATCCAACCATCTGTCCG+CGG | + | chr5.1:17182369-17182388 | MS.gene72807:intron | 55.0% | |
| TTTAGGCAAGCCCAGGCTCA+AGG | + | chr5.1:17183502-17183521 | MS.gene72807:CDS | 55.0% | |
| ! | AGGAGCAGCTACACTAGCCT+GGG | - | chr5.1:17180287-17180306 | None:intergenic | 55.0% |
| ! | AGGAGCAGCTGGCTCAGTTT+AGG | + | chr5.1:17183485-17183504 | MS.gene72807:CDS | 55.0% |
| ! | GTTGTTGTTGGGGAAGGGGA+AGG | - | chr5.1:17180462-17180481 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | - | chr5.1:17180454-17180473 | None:intergenic | 55.0% |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | + | chr5.1:17181228-17181247 | MS.gene72807:CDS | 55.0% |
| !! | ACGCTCGTCGCAGTATTGGT+CGG | - | chr5.1:17181464-17181483 | None:intergenic | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | + | chr5.1:17180903-17180922 | MS.gene72807:CDS | 55.0% |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | - | chr5.1:17180451-17180470 | None:intergenic | 55.0% |
| AGCCGCGTCTGATCTGAGCA+TGG | + | chr5.1:17182628-17182647 | MS.gene72807:intron | 60.0% | |
| CAGGAGCAGCTACACTAGCC+TGG | - | chr5.1:17180288-17180307 | None:intergenic | 60.0% | |
| CGCGTCTGATCTGAGCATGG+AGG | + | chr5.1:17182631-17182650 | MS.gene72807:intron | 60.0% | |
| CTGAGCTGACGCCAGAGATG+CGG | + | chr5.1:17183365-17183384 | MS.gene72807:CDS | 60.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | + | chr5.1:17180137-17180156 | MS.gene72807:CDS | 60.0% | |
| GGCTCAGTTTAGGCAAGCCC+AGG | + | chr5.1:17183495-17183514 | MS.gene72807:CDS | 60.0% | |
| TGAGCTGACGCCAGAGATGC+GGG | + | chr5.1:17183366-17183385 | MS.gene72807:CDS | 60.0% | |
| ! | AGCAGCTACACTAGCCTGGG+AGG | - | chr5.1:17180284-17180303 | None:intergenic | 60.0% |
| ! | ATCCTCCCTTTTCCGACGCC+CGG | - | chr5.1:17181236-17181255 | None:intergenic | 60.0% |
| ! | CTTAGTGGACGCAGCGACAG+AGG | + | chr5.1:17180171-17180190 | MS.gene72807:CDS | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | + | chr5.1:17181185-17181204 | MS.gene72807:CDS | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | + | chr5.1:17181227-17181246 | MS.gene72807:CDS | 60.0% |
| !! | GCTTCAGCAGCCGGTTTGCA+AGG | - | chr5.1:17180808-17180827 | None:intergenic | 60.0% |
| !! | TGAAGAGGGTGGTGGAGAGC+TGG | + | chr5.1:17180624-17180643 | MS.gene72807:CDS | 60.0% |
| AAGCGGCGCACTAGTGTGGG+AGG | - | chr5.1:17183530-17183549 | None:intergenic | 65.0% | |
| AGCGGCGCACTAGTGTGGGA+GGG | - | chr5.1:17183529-17183548 | None:intergenic | 65.0% | |
| CGCATCTCTGGCGTCAGCTC+AGG | - | chr5.1:17183367-17183386 | None:intergenic | 65.0% | |
| GACGGCTTCTGCTCCTGCGA+CGG | + | chr5.1:17180309-17180328 | MS.gene72807:CDS | 65.0% | |
| GTATGACCGGCAGCTTGCCG+AGG | + | chr5.1:17183159-17183178 | MS.gene72807:CDS | 65.0% | |
| GTGGGAGGGACCTTGAGCCT+GGG | - | chr5.1:17183515-17183534 | None:intergenic | 65.0% | |
| TGAGGAGCAGAAGCCGTCGC+AGG | - | chr5.1:17180325-17180344 | None:intergenic | 65.0% | |
| TGGCGTCAGCTCAGGCTGCT+GGG | - | chr5.1:17183359-17183378 | None:intergenic | 65.0% | |
| TGTGGGAGGGACCTTGAGCC+TGG | - | chr5.1:17183516-17183535 | None:intergenic | 65.0% | |
| ! | ACACTAGCCTGGGAGGACCC+AGG | - | chr5.1:17180277-17180296 | None:intergenic | 65.0% |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | + | chr5.1:17181477-17181496 | MS.gene72807:CDS | 65.0% |
| ! | CGGAGAGCACGCTGAGCGTA+TGG | + | chr5.1:17181284-17181303 | MS.gene72807:CDS | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | + | chr5.1:17181231-17181250 | MS.gene72807:CDS | 65.0% |
| CGTCAGCTCAGGCTGCTGGG+AGG | - | chr5.1:17183356-17183375 | None:intergenic | 70.0% | |
| CTGGCGTCAGCTCAGGCTGC+TGG | - | chr5.1:17183360-17183379 | None:intergenic | 70.0% | |
| GCAGGAGCAGAAGCCGTCGC+AGG | - | chr5.1:17180307-17180326 | None:intergenic | 70.0% | |
| GGGAGGACCCAGGTGATCCC+TGG | - | chr5.1:17180267-17180286 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | + | chr5.1:17180267-17180286 | MS.gene72807:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 17180112 | 17183795 | 17180112 | ID=MS.gene72807 |
| chr5.1 | mRNA | 17180112 | 17183795 | 17180112 | ID=MS.gene72807.t1;Parent=MS.gene72807 |
| chr5.1 | exon | 17180112 | 17180722 | 17180112 | ID=MS.gene72807.t1.exon1;Parent=MS.gene72807.t1 |
| chr5.1 | CDS | 17180112 | 17180722 | 17180112 | ID=cds.MS.gene72807.t1;Parent=MS.gene72807.t1 |
| chr5.1 | exon | 17180798 | 17180924 | 17180798 | ID=MS.gene72807.t1.exon2;Parent=MS.gene72807.t1 |
| chr5.1 | CDS | 17180798 | 17180924 | 17180798 | ID=cds.MS.gene72807.t1;Parent=MS.gene72807.t1 |
| chr5.1 | exon | 17181015 | 17181305 | 17181015 | ID=MS.gene72807.t1.exon3;Parent=MS.gene72807.t1 |
| chr5.1 | CDS | 17181015 | 17181305 | 17181015 | ID=cds.MS.gene72807.t1;Parent=MS.gene72807.t1 |
| chr5.1 | exon | 17181397 | 17181498 | 17181397 | ID=MS.gene72807.t1.exon4;Parent=MS.gene72807.t1 |
| chr5.1 | CDS | 17181397 | 17181498 | 17181397 | ID=cds.MS.gene72807.t1;Parent=MS.gene72807.t1 |
| chr5.1 | exon | 17183154 | 17183576 | 17183154 | ID=MS.gene72807.t1.exon5;Parent=MS.gene72807.t1 |
| chr5.1 | CDS | 17183154 | 17183576 | 17183154 | ID=cds.MS.gene72807.t1;Parent=MS.gene72807.t1 |
| chr5.1 | exon | 17183718 | 17183795 | 17183718 | ID=MS.gene72807.t1.exon6;Parent=MS.gene72807.t1 |
| chr5.1 | CDS | 17183718 | 17183795 | 17183718 | ID=cds.MS.gene72807.t1;Parent=MS.gene72807.t1 |
| Gene Sequence |
| Protein sequence |
