Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73046.t1 | RHN65930.1 | 93.3 | 342 | 21 | 1 | 1 | 340 | 1 | 342 | 2.00E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73046.t1 | Q5M947 | 36.2 | 116 | 59 | 4 | 224 | 326 | 159 | 272 | 1.4e-06 | 55.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73046.t1 | A0A396IKZ4 | 93.3 | 342 | 21 | 1 | 1 | 340 | 1 | 342 | 1.5e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049873 | MS.gene73046 | 0.81185 | 5.70E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene73046 | 0.809733 | 1.64E-50 | -1.69E-46 |
| MS.gene052717 | MS.gene73046 | 0.808302 | 3.31E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene73046 | 0.823548 | 1.31E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene73046 | 0.804686 | 1.92E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene73046 | 0.802224 | 6.21E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene73046 | 0.801762 | 7.73E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene73046 | 0.819728 | 9.97E-53 | -1.69E-46 |
| MS.gene059935 | MS.gene73046 | 0.863056 | 3.27E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73046.t1 | AT5G48240 | 46.809 | 329 | 133 | 8 | 16 | 339 | 18 | 309 | 3.64e-79 | 244 |
| MS.gene73046.t1 | AT5G48240 | 41.935 | 372 | 135 | 8 | 16 | 339 | 18 | 356 | 2.30e-72 | 228 |
| MS.gene73046.t1 | AT5G48240 | 44.295 | 298 | 116 | 7 | 16 | 308 | 18 | 270 | 8.15e-61 | 197 |
Find 74 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCACACCTGCTAATTATT+TGG | 0.128361 | 3.2:+11601333 | MS.gene73046:CDS |
| CGCTGAAAAGAAGGCTTCTT+TGG | 0.194609 | 3.2:-11602720 | None:intergenic |
| TGTGGTGGCTTCATCACTTT+TGG | 0.264791 | 3.2:-11600563 | None:intergenic |
| CTTCATCGGAACTGCTATCT+TGG | 0.315922 | 3.2:-11603667 | None:intergenic |
| GTGAAGGTTGTAAAGCATTC+AGG | 0.319257 | 3.2:+11600918 | MS.gene73046:CDS |
| GAGCTGGGAAAGAGGAAGTT+TGG | 0.319454 | 3.2:+11600506 | MS.gene73046:CDS |
| AGCAGTTCCGATGAAGATTA+AGG | 0.322931 | 3.2:+11603674 | MS.gene73046:CDS |
| CTTCTTTATAATGCTCTTGA+AGG | 0.331528 | 3.2:-11600945 | None:intergenic |
| GAGAGGATGAACAACCTTCT+TGG | 0.339326 | 3.2:+11603471 | MS.gene73046:CDS |
| CTTTGCATCCCTGTTCTTTG+AGG | 0.339480 | 3.2:-11601697 | None:intergenic |
| TCACTGAATTTAGTAATTCC+TGG | 0.358866 | 3.2:-11600899 | None:intergenic |
| GGCTGGACCCCTCAAAGAAC+AGG | 0.375162 | 3.2:+11601688 | MS.gene73046:CDS |
| TTTGCATCCCTGTTCTTTGA+GGG | 0.379386 | 3.2:-11601696 | None:intergenic |
| GCTGACAAGTTCGAGAATAA+AGG | 0.387185 | 3.2:+11603517 | MS.gene73046:CDS |
| CTTGTTACAGCTAGCAGAAA+AGG | 0.390626 | 3.2:+11601306 | MS.gene73046:intron |
| TCCCTTGTTTGTGCTTGCAT+TGG | 0.391353 | 3.2:-11603450 | None:intergenic |
| TGTAAAGTTTCTTCATTTGT+TGG | 0.412234 | 3.2:-11600610 | None:intergenic |
| GGAGACAGAGCGCAAGATCA+AGG | 0.426021 | 3.2:+11601124 | MS.gene73046:CDS |
| GAGACAACTGCCCCTGCTAC+TGG | 0.429501 | 3.2:+11600674 | MS.gene73046:CDS |
| CTTATAAGTGTAGCGACAAA+AGG | 0.434006 | 3.2:+11601373 | MS.gene73046:CDS |
| AGAGGATGAACAACCTTCTT+GGG | 0.435774 | 3.2:+11603472 | MS.gene73046:CDS |
| GCGTTAGGGAAGCCAGCTAT+TGG | 0.445925 | 3.2:+11602740 | MS.gene73046:CDS |
| TATAGAAAAGCTTGCGGAAG+AGG | 0.447708 | 3.2:+11601103 | MS.gene73046:CDS |
| TTCATCGGAACTGCTATCTT+GGG | 0.454720 | 3.2:-11603666 | None:intergenic |
| ATCACCTTTGCACCAATAGC+TGG | 0.456798 | 3.2:-11602752 | None:intergenic |
| ATGGAAGTGAGCTGGGAAAG+AGG | 0.457388 | 3.2:+11600498 | MS.gene73046:CDS |
| CAAGTTCGAGAATAAAGGAT+TGG | 0.462911 | 3.2:+11603522 | MS.gene73046:CDS |
| TTCAAAACCTTAATCTTCAT+CGG | 0.464287 | 3.2:-11603681 | None:intergenic |
| GAGTGTTTCTGATGAGTTGT+TGG | 0.478230 | 3.2:+11600967 | MS.gene73046:CDS |
| GAAGATCTATCTGAAGATGA+AGG | 0.486837 | 3.2:+11600782 | MS.gene73046:CDS |
| CTTCCCTAACGCTGAAAAGA+AGG | 0.488467 | 3.2:-11602729 | None:intergenic |
| AAAGCTCAAGTTGCTCAGAA+AGG | 0.489370 | 3.2:+11601666 | MS.gene73046:CDS |
| TTCTTGTGATCTGACAATAC+TGG | 0.489621 | 3.2:-11601074 | None:intergenic |
| AAGCTCAAGTTGCTCAGAAA+GGG | 0.498953 | 3.2:+11601667 | MS.gene73046:CDS |
| CGTCTAGTACTCCCAGTAGC+AGG | 0.499349 | 3.2:-11600686 | None:intergenic |
| AGCATATAATTATCGCGTAA+TGG | 0.502059 | 3.2:-11603497 | None:intergenic |
| AGTTGAGCATGGAAGTGAGC+TGG | 0.503946 | 3.2:+11600490 | MS.gene73046:CDS |
| AAGTTCGAGAATAAAGGATT+GGG | 0.504352 | 3.2:+11603523 | MS.gene73046:CDS |
| GAAGATGAAGGGGTAGCAAA+AGG | 0.505862 | 3.2:+11600794 | MS.gene73046:CDS |
| CTCAAAGAACAGGGATGCAA+AGG | 0.511691 | 3.2:+11601698 | MS.gene73046:CDS |
| TTGCATCCCTGTTCTTTGAG+GGG | 0.522520 | 3.2:-11601695 | None:intergenic |
| TTGTTACAGCTAGCAGAAAA+GGG | 0.523614 | 3.2:+11601307 | MS.gene73046:intron |
| GAGGAGGATGAAATTCAGCC+AGG | 0.526822 | 3.2:+11600881 | MS.gene73046:CDS |
| ACTTTCTTCTGTCCATGTGG+TGG | 0.533702 | 3.2:-11600578 | None:intergenic |
| AGACAACTGCCCCTGCTACT+GGG | 0.534405 | 3.2:+11600675 | MS.gene73046:CDS |
| GGCCAATGCAAGCACAAACA+AGG | 0.534686 | 3.2:+11603448 | MS.gene73046:intron |
| GTTGAGCATGGAAGTGAGCT+GGG | 0.538443 | 3.2:+11600491 | MS.gene73046:CDS |
| TGCGCGTCCAAATAATTAGC+AGG | 0.542869 | 3.2:-11601340 | None:intergenic |
| GAGACAGAGCGCAAGATCAA+GGG | 0.544740 | 3.2:+11601125 | MS.gene73046:CDS |
| TCAAGTTGCTCAGAAAGGGC+TGG | 0.553946 | 3.2:+11601671 | MS.gene73046:CDS |
| AAGATCTATCTGAAGATGAA+GGG | 0.561457 | 3.2:+11600783 | MS.gene73046:CDS |
| GTCTAGTACTCCCAGTAGCA+GGG | 0.564848 | 3.2:-11600685 | None:intergenic |
| CTCTGAGGATGAAGATGATG+AGG | 0.568128 | 3.2:+11600862 | MS.gene73046:CDS |
| TGGGAAAGAGGAAGTTTGGT+AGG | 0.575576 | 3.2:+11600510 | MS.gene73046:CDS |
| TTAACTTTCTTCTGTCCATG+TGG | 0.577923 | 3.2:-11600581 | None:intergenic |
| TCGCGTAATGGAGCCCAAGA+AGG | 0.580268 | 3.2:-11603485 | None:intergenic |
| TCAAAGAACAGGGATGCAAA+GGG | 0.580392 | 3.2:+11601699 | MS.gene73046:CDS |
| GGAATTACTAAATTCAGTGA+AGG | 0.581563 | 3.2:+11600902 | MS.gene73046:CDS |
| GAAGCCAGCTATTGGTGCAA+AGG | 0.585865 | 3.2:+11602748 | MS.gene73046:CDS |
| GAAACACAAGTAGTTGAGCA+TGG | 0.586292 | 3.2:+11600479 | MS.gene73046:CDS |
| GCCAATGCAAGCACAAACAA+GGG | 0.604219 | 3.2:+11603449 | MS.gene73046:CDS |
| TGCAAGCACAAACAAGGGAG+AGG | 0.605005 | 3.2:+11603454 | MS.gene73046:CDS |
| ATAAGTGTAGCGACAAAAGG+AGG | 0.628567 | 3.2:+11601376 | MS.gene73046:CDS |
| AGATCTATCTGAAGATGAAG+GGG | 0.630573 | 3.2:+11600784 | MS.gene73046:CDS |
| TCTTGTTATAGAAAAGCTTG+CGG | 0.634957 | 3.2:+11601097 | MS.gene73046:CDS |
| AAAGTGATGAAGCCACCACA+TGG | 0.649389 | 3.2:+11600566 | MS.gene73046:CDS |
| AGGAAGTTTGGTAGGAACCA+AGG | 0.652606 | 3.2:+11600518 | MS.gene73046:CDS |
| GTGGCATCTATGAAGACTAG+AGG | 0.654804 | 3.2:+11600710 | MS.gene73046:CDS |
| TAAGAAAGTTAATTTCTCTG+AGG | 0.655143 | 3.2:+11600847 | MS.gene73046:CDS |
| TGAGGATGAAGATGATGAGG+AGG | 0.663150 | 3.2:+11600865 | MS.gene73046:CDS |
| TACTGGGAGTACTAGACGTG+TGG | 0.664181 | 3.2:+11600691 | MS.gene73046:CDS |
| GCTGGACCCCTCAAAGAACA+GGG | 0.672553 | 3.2:+11601689 | MS.gene73046:CDS |
| TCTAGTACTCCCAGTAGCAG+GGG | 0.695403 | 3.2:-11600684 | None:intergenic |
| AGGTTGTAAAGCATTCAGGA+TGG | 0.710807 | 3.2:+11600922 | MS.gene73046:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATGAATTGA+AGG | - | chr3.2:11602221-11602240 | None:intergenic | 10.0% |
| !! | AATAAATAGAGTAAATAATT+TGG | - | chr3.2:11602915-11602934 | None:intergenic | 10.0% |
| !! | TTAATTATCTAAAAAACATT+TGG | - | chr3.2:11602310-11602329 | None:intergenic | 10.0% |
| !!! | AAGTTTTCTATTTTAAAAAT+AGG | - | chr3.2:11602057-11602076 | None:intergenic | 10.0% |
| !!! | TCATTTTTTTTTTTTTAAAG+AGG | + | chr3.2:11602226-11602245 | MS.gene73046:intron | 10.0% |
| !! | GATTATCATTATTAAATTGA+AGG | + | chr3.2:11601616-11601635 | MS.gene73046:intron | 15.0% |
| !! | TTAATTGTTGAAAAATAAGA+GGG | + | chr3.2:11602520-11602539 | MS.gene73046:intron | 15.0% |
| !! | TTCTTTAATGATAAAATTTG+AGG | + | chr3.2:11602010-11602029 | MS.gene73046:intron | 15.0% |
| !! | TTTAATTGTTGAAAAATAAG+AGG | + | chr3.2:11602519-11602538 | MS.gene73046:intron | 15.0% |
| !!! | TAACTTTAAAATAAACTTAC+TGG | - | chr3.2:11603560-11603579 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTCTTTTAAATAG+AGG | + | chr3.2:11601407-11601426 | MS.gene73046:intron | 15.0% |
| !! | AAACAAAATTTGCAAATGTT+AGG | - | chr3.2:11601560-11601579 | None:intergenic | 20.0% |
| !! | ACAAATTAGATAGTAAGAAT+TGG | - | chr3.2:11602673-11602692 | None:intergenic | 20.0% |
| !! | CAAATTAGATAGTAAGAATT+GGG | - | chr3.2:11602672-11602691 | None:intergenic | 20.0% |
| !! | GTTTATTGAGGTTTAAAAAA+AGG | - | chr3.2:11602271-11602290 | None:intergenic | 20.0% |
| !! | TAGACCAAAATATTATCTAT+CGG | + | chr3.2:11601253-11601272 | MS.gene73046:intron | 20.0% |
| !!! | ACAATAGAACAATTTTAAAG+TGG | - | chr3.2:11603201-11603220 | None:intergenic | 20.0% |
| !!! | ACATAAATTTTAGTGCTAAT+TGG | - | chr3.2:11601217-11601236 | None:intergenic | 20.0% |
| !!! | CAAACATTTTTGAGTATATT+AGG | - | chr3.2:11602649-11602668 | None:intergenic | 20.0% |
| !!! | CATAAATTTTAGTGCTAATT+GGG | - | chr3.2:11601216-11601235 | None:intergenic | 20.0% |
| !!! | CATTCAACTTATATACATTT+TGG | - | chr3.2:11602885-11602904 | None:intergenic | 20.0% |
| !!! | TCTTTCATTTTTCGAATAAA+GGG | - | chr3.2:11602972-11602991 | None:intergenic | 20.0% |
| !!! | TTCTTTCATTTTTCGAATAA+AGG | - | chr3.2:11602973-11602992 | None:intergenic | 20.0% |
| ! | AAAATCAGTGTTATCAATAG+AGG | - | chr3.2:11602403-11602422 | None:intergenic | 25.0% |
| ! | AAAGAAAAAGGAATCTCATT+TGG | + | chr3.2:11601808-11601827 | MS.gene73046:intron | 25.0% |
| ! | AAATAGAAAACTTAAGAGTC+AGG | + | chr3.2:11602064-11602083 | MS.gene73046:intron | 25.0% |
| ! | AAGAAAAAGGAATCTCATTT+GGG | + | chr3.2:11601809-11601828 | MS.gene73046:intron | 25.0% |
| ! | ACCTCTAAATTAATGTGATA+TGG | + | chr3.2:11603133-11603152 | MS.gene73046:intron | 25.0% |
| ! | AGACCAAAATATTATCTATC+GGG | + | chr3.2:11601254-11601273 | MS.gene73046:intron | 25.0% |
| ! | CTGCATAATAAAGTTTATTG+AGG | - | chr3.2:11602283-11602302 | None:intergenic | 25.0% |
| ! | GAATGAATAAAAATGAGCTT+TGG | - | chr3.2:11601869-11601888 | None:intergenic | 25.0% |
| ! | TAAACTTGAACAACTCTATA+GGG | + | chr3.2:11601050-11601069 | MS.gene73046:intron | 25.0% |
| ! | TAAGAAAGTTAATTTCTCTG+AGG | + | chr3.2:11600847-11600866 | MS.gene73046:CDS | 25.0% |
| ! | TACGTATTAAGGTGATTATA+GGG | - | chr3.2:11602101-11602120 | None:intergenic | 25.0% |
| ! | TCCATATCACATTAATTTAG+AGG | - | chr3.2:11603137-11603156 | None:intergenic | 25.0% |
| ! | TGTAAAGTTTCTTCATTTGT+TGG | - | chr3.2:11600613-11600632 | None:intergenic | 25.0% |
| ! | TTACGTATTAAGGTGATTAT+AGG | - | chr3.2:11602102-11602121 | None:intergenic | 25.0% |
| !! | GAAATTTAACACAACTGTTT+TGG | + | chr3.2:11601843-11601862 | MS.gene73046:intron | 25.0% |
| !! | GTTTCTTACTTGACTTTTTA+CGG | - | chr3.2:11600544-11600563 | None:intergenic | 25.0% |
| !! | TCTGTTGATTATAACTGATT+AGG | + | chr3.2:11602821-11602840 | MS.gene73046:intron | 25.0% |
| !! | TTACCCGATAGATAATATTT+TGG | - | chr3.2:11601260-11601279 | None:intergenic | 25.0% |
| !!! | ATATGATGTTCTAAGAATGA+GGG | + | chr3.2:11602462-11602481 | MS.gene73046:intron | 25.0% |
| !!! | ATATTTTGGTCTACGATAAT+TGG | - | chr3.2:11601246-11601265 | None:intergenic | 25.0% |
| AAGATCTATCTGAAGATGAA+GGG | + | chr3.2:11600783-11600802 | MS.gene73046:CDS | 30.0% | |
| AAGTTCGAGAATAAAGGATT+GGG | + | chr3.2:11603523-11603542 | MS.gene73046:CDS | 30.0% | |
| ACCACAAAAATAGAACAGAT+AGG | - | chr3.2:11602625-11602644 | None:intergenic | 30.0% | |
| AGAAAAAGGAATCTCATTTG+GGG | + | chr3.2:11601810-11601829 | MS.gene73046:intron | 30.0% | |
| AGCATATAATTATCGCGTAA+TGG | - | chr3.2:11603500-11603519 | None:intergenic | 30.0% | |
| ATAGTGATTGTAGCATCTAT+AGG | + | chr3.2:11601973-11601992 | MS.gene73046:intron | 30.0% | |
| CGATGTGTTGAAAAAAAATG+TGG | - | chr3.2:11602154-11602173 | None:intergenic | 30.0% | |
| CTAAACTTGAACAACTCTAT+AGG | + | chr3.2:11601049-11601068 | MS.gene73046:intron | 30.0% | |
| CTTAATTCTGTTGAAGAACA+AGG | + | chr3.2:11602855-11602874 | MS.gene73046:intron | 30.0% | |
| CTTCTTTATAATGCTCTTGA+AGG | - | chr3.2:11600948-11600967 | None:intergenic | 30.0% | |
| GCAACAGTTAAATAAGTAAG+AGG | - | chr3.2:11601474-11601493 | None:intergenic | 30.0% | |
| GGAATTACTAAATTCAGTGA+AGG | + | chr3.2:11600902-11600921 | MS.gene73046:CDS | 30.0% | |
| TAGTGATTGTAGCATCTATA+GGG | + | chr3.2:11601974-11601993 | MS.gene73046:intron | 30.0% | |
| TATAGATGCTACAATCACTA+TGG | - | chr3.2:11601974-11601993 | None:intergenic | 30.0% | |
| TCACTGAATTTAGTAATTCC+TGG | - | chr3.2:11600902-11600921 | None:intergenic | 30.0% | |
| TCATACAAAGAAACAAAGAG+AGG | - | chr3.2:11601598-11601617 | None:intergenic | 30.0% | |
| TGAGAGAAGTTTACGTATTA+AGG | - | chr3.2:11602112-11602131 | None:intergenic | 30.0% | |
| TGTTGAAAAATAAGAGGGTT+CGG | + | chr3.2:11602525-11602544 | MS.gene73046:intron | 30.0% | |
| ! | ATCCAAGCAACTTGATAATT+AGG | - | chr3.2:11603417-11603436 | None:intergenic | 30.0% |
| ! | ATTATCAAGTTGCTTGGATT+TGG | + | chr3.2:11603418-11603437 | MS.gene73046:intron | 30.0% |
| ! | TCCAAGCAACTTGATAATTA+GGG | - | chr3.2:11603416-11603435 | None:intergenic | 30.0% |
| ! | TCCTTTTTCTTTACTTGAGA+CGG | - | chr3.2:11601800-11601819 | None:intergenic | 30.0% |
| ! | TCTTGTTATAGAAAAGCTTG+CGG | + | chr3.2:11601097-11601116 | MS.gene73046:CDS | 30.0% |
| ! | TTGACTTGAGCATTTACTTA+CGG | + | chr3.2:11602935-11602954 | MS.gene73046:intron | 30.0% |
| !! | GATATGATGTTCTAAGAATG+AGG | + | chr3.2:11602461-11602480 | MS.gene73046:intron | 30.0% |
| !! | TATGATGTTCTAAGAATGAG+GGG | + | chr3.2:11602463-11602482 | MS.gene73046:intron | 30.0% |
| !!! | ACCTATCTGTTCTATTTTTG+TGG | + | chr3.2:11602621-11602640 | MS.gene73046:intron | 30.0% |
| AAAAAAAATGTGGCAGAGCA+TGG | - | chr3.2:11602144-11602163 | None:intergenic | 35.0% | |
| ACAAAGAGAGGAGGAAAATT+TGG | - | chr3.2:11601586-11601605 | None:intergenic | 35.0% | |
| ACCGTCTCAAGTAAAGAAAA+AGG | + | chr3.2:11601796-11601815 | MS.gene73046:intron | 35.0% | |
| AGAAAACTTAAGAGTCAGGA+TGG | + | chr3.2:11602068-11602087 | MS.gene73046:intron | 35.0% | |
| AGATCTATCTGAAGATGAAG+GGG | + | chr3.2:11600784-11600803 | MS.gene73046:CDS | 35.0% | |
| ATCTCATTTGGGGATTTAAC+AGG | + | chr3.2:11601820-11601839 | MS.gene73046:intron | 35.0% | |
| CAAGTTCGAGAATAAAGGAT+TGG | + | chr3.2:11603522-11603541 | MS.gene73046:CDS | 35.0% | |
| CTACTTCTGATTTCTTTCAG+TGG | + | chr3.2:11601506-11601525 | MS.gene73046:intron | 35.0% | |
| CTGTCAGTGTTATCAAATAG+TGG | + | chr3.2:11601888-11601907 | MS.gene73046:intron | 35.0% | |
| CTTATAAGTGTAGCGACAAA+AGG | + | chr3.2:11601373-11601392 | MS.gene73046:CDS | 35.0% | |
| GAAGATCTATCTGAAGATGA+AGG | + | chr3.2:11600782-11600801 | MS.gene73046:CDS | 35.0% | |
| GACAAAAAAGGAAAAGCTGA+TGG | + | chr3.2:11601151-11601170 | MS.gene73046:CDS | 35.0% | |
| GTGTTATCAATAGAGGATAG+TGG | - | chr3.2:11602396-11602415 | None:intergenic | 35.0% | |
| GTTCTTCAACAGAATTAAGC+AGG | - | chr3.2:11602854-11602873 | None:intergenic | 35.0% | |
| GTTGAAAAATAAGAGGGTTC+GGG | + | chr3.2:11602526-11602545 | MS.gene73046:intron | 35.0% | |
| TACAAAGAAACAAAGAGAGG+AGG | - | chr3.2:11601595-11601614 | None:intergenic | 35.0% | |
| TCACAAACAAATCTTCAGCA+TGG | - | chr3.2:11602443-11602462 | None:intergenic | 35.0% | |
| TCTCATTTGGGGATTTAACA+GGG | + | chr3.2:11601821-11601840 | MS.gene73046:intron | 35.0% | |
| TGTCACACCTGCTAATTATT+TGG | + | chr3.2:11601333-11601352 | MS.gene73046:CDS | 35.0% | |
| TGTTCAAAGTTCATCCAGTT+TGG | - | chr3.2:11603242-11603261 | None:intergenic | 35.0% | |
| TTAACTTTCTTCTGTCCATG+TGG | - | chr3.2:11600584-11600603 | None:intergenic | 35.0% | |
| TTCTTGTGATCTGACAATAC+TGG | - | chr3.2:11601077-11601096 | None:intergenic | 35.0% | |
| TTGTTACAGCTAGCAGAAAA+GGG | + | chr3.2:11601307-11601326 | MS.gene73046:intron | 35.0% | |
| TTTAACTGTTGCTGTGAACA+TGG | + | chr3.2:11601482-11601501 | MS.gene73046:intron | 35.0% | |
| TTTCACCAAAAATAAGCACG+TGG | + | chr3.2:11600742-11600761 | MS.gene73046:CDS | 35.0% | |
| ! | TCCCTAATTATCAAGTTGCT+TGG | + | chr3.2:11603412-11603431 | MS.gene73046:intron | 35.0% |
| ! | TCGTTCAGTCAGTTTTTCAT+TGG | + | chr3.2:11602790-11602809 | MS.gene73046:intron | 35.0% |
| !! | GTTTTATACACACTTGTTGC+AGG | + | chr3.2:11601638-11601657 | MS.gene73046:intron | 35.0% |
| !! | TAGAGGATAGTGGAAAATAG+TGG | - | chr3.2:11602386-11602405 | None:intergenic | 35.0% |
| AAACAGTGAGCTGCATACAA+AGG | + | chr3.2:11601948-11601967 | MS.gene73046:intron | 40.0% | |
| AAACTCACTGGAAATAGAGG+AGG | - | chr3.2:11602181-11602200 | None:intergenic | 40.0% | |
| AACAGAATTAAGCAGGACTC+GGG | - | chr3.2:11602847-11602866 | None:intergenic | 40.0% | |
| AGAGGATGAACAACCTTCTT+GGG | + | chr3.2:11603472-11603491 | MS.gene73046:CDS | 40.0% | |
| AGCATTTACTTACGGACACT+TGG | + | chr3.2:11602943-11602962 | MS.gene73046:intron | 40.0% | |
| ATAAGTGTAGCGACAAAAGG+AGG | + | chr3.2:11601376-11601395 | MS.gene73046:CDS | 40.0% | |
| CAACAGAATTAAGCAGGACT+CGG | - | chr3.2:11602848-11602867 | None:intergenic | 40.0% | |
| CTTGTTACAGCTAGCAGAAA+AGG | + | chr3.2:11601306-11601325 | MS.gene73046:intron | 40.0% | |
| GAAACACAAGTAGTTGAGCA+TGG | + | chr3.2:11600479-11600498 | MS.gene73046:CDS | 40.0% | |
| GATCAAGGGAGAGACAAAAA+AGG | + | chr3.2:11601139-11601158 | MS.gene73046:CDS | 40.0% | |
| GCATTTACTTACGGACACTT+GGG | + | chr3.2:11602944-11602963 | MS.gene73046:intron | 40.0% | |
| GCTGACAAGTTCGAGAATAA+AGG | + | chr3.2:11603517-11603536 | MS.gene73046:CDS | 40.0% | |
| GCTTAGACAAATTGCCAAAC+TGG | + | chr3.2:11603225-11603244 | MS.gene73046:intron | 40.0% | |
| GTGGAATAGCATACCATTGT+AGG | - | chr3.2:11602367-11602386 | None:intergenic | 40.0% | |
| TATAGAAAAGCTTGCGGAAG+AGG | + | chr3.2:11601103-11601122 | MS.gene73046:CDS | 40.0% | |
| TCAAAGAACAGGGATGCAAA+GGG | + | chr3.2:11601699-11601718 | MS.gene73046:CDS | 40.0% | |
| TGAGCAACATGATGAGTACA+AGG | - | chr3.2:11603605-11603624 | None:intergenic | 40.0% | |
| TGGAAACTCACTGGAAATAG+AGG | - | chr3.2:11602184-11602203 | None:intergenic | 40.0% | |
| TTCATCGGAACTGCTATCTT+GGG | - | chr3.2:11603669-11603688 | None:intergenic | 40.0% | |
| TTGCTTGGATTTGGATATGC+AGG | + | chr3.2:11603427-11603446 | MS.gene73046:intron | 40.0% | |
| TTTGCATCCCTGTTCTTTGA+GGG | - | chr3.2:11601699-11601718 | None:intergenic | 40.0% | |
| ! | AAAGCTCAAGTTGCTCAGAA+AGG | + | chr3.2:11601666-11601685 | MS.gene73046:CDS | 40.0% |
| ! | AAGCCTTCTTTTCAGCGTTA+GGG | + | chr3.2:11602726-11602745 | MS.gene73046:CDS | 40.0% |
| ! | AAGCTCAAGTTGCTCAGAAA+GGG | + | chr3.2:11601667-11601686 | MS.gene73046:CDS | 40.0% |
| ! | AGGTTGTAAAGCATTCAGGA+TGG | + | chr3.2:11600922-11600941 | MS.gene73046:CDS | 40.0% |
| ! | CTTGATAATTAGGGACACGA+TGG | - | chr3.2:11603407-11603426 | None:intergenic | 40.0% |
| ! | GAGTGTTTCTGATGAGTTGT+TGG | + | chr3.2:11600967-11600986 | MS.gene73046:CDS | 40.0% |
| ! | GTGAAGGTTGTAAAGCATTC+AGG | + | chr3.2:11600918-11600937 | MS.gene73046:CDS | 40.0% |
| ! | TACTTGACTTTTTACGGCCT+TGG | - | chr3.2:11600538-11600557 | None:intergenic | 40.0% |
| ! | TGATGAGTTGTTGGTAAGCT+AGG | + | chr3.2:11600976-11600995 | MS.gene73046:intron | 40.0% |
| !! | TTCCTCCACGTGCTTATTTT+TGG | - | chr3.2:11600750-11600769 | None:intergenic | 40.0% |
| !! | TTTTAAAGAGGCAGCATGTG+AGG | + | chr3.2:11602238-11602257 | MS.gene73046:intron | 40.0% |
| AAAGTGATGAAGCCACCACA+TGG | + | chr3.2:11600566-11600585 | MS.gene73046:CDS | 45.0% | |
| AAATAGCAGACGCAGCATAG+TGG | - | chr3.2:11602343-11602362 | None:intergenic | 45.0% | |
| ACTTTCTTCTGTCCATGTGG+TGG | - | chr3.2:11600581-11600600 | None:intergenic | 45.0% | |
| AGGAAGTTTGGTAGGAACCA+AGG | + | chr3.2:11600518-11600537 | MS.gene73046:CDS | 45.0% | |
| ATCACCTTTGCACCAATAGC+TGG | - | chr3.2:11602755-11602774 | None:intergenic | 45.0% | |
| CACCAAAAATAAGCACGTGG+AGG | + | chr3.2:11600745-11600764 | MS.gene73046:CDS | 45.0% | |
| CATCATGTTGCTCAACTGCA+GGG | + | chr3.2:11603611-11603630 | MS.gene73046:intron | 45.0% | |
| CGCTGAAAAGAAGGCTTCTT+TGG | - | chr3.2:11602723-11602742 | None:intergenic | 45.0% | |
| CTCAAAGAACAGGGATGCAA+AGG | + | chr3.2:11601698-11601717 | MS.gene73046:CDS | 45.0% | |
| CTTCATCGGAACTGCTATCT+TGG | - | chr3.2:11603670-11603689 | None:intergenic | 45.0% | |
| CTTCCCTAACGCTGAAAAGA+AGG | - | chr3.2:11602732-11602751 | None:intergenic | 45.0% | |
| CTTTGCATCCCTGTTCTTTG+AGG | - | chr3.2:11601700-11601719 | None:intergenic | 45.0% | |
| GAAGATGAAGGGGTAGCAAA+AGG | + | chr3.2:11600794-11600813 | MS.gene73046:CDS | 45.0% | |
| GAGAGGATGAACAACCTTCT+TGG | + | chr3.2:11603471-11603490 | MS.gene73046:CDS | 45.0% | |
| GCCAATGCAAGCACAAACAA+GGG | + | chr3.2:11603449-11603468 | MS.gene73046:CDS | 45.0% | |
| GTGGCATCTATGAAGACTAG+AGG | + | chr3.2:11600710-11600729 | MS.gene73046:CDS | 45.0% | |
| TATCTATCGGGTAAGCAGTC+TGG | + | chr3.2:11601266-11601285 | MS.gene73046:intron | 45.0% | |
| TCATCATGTTGCTCAACTGC+AGG | + | chr3.2:11603610-11603629 | MS.gene73046:intron | 45.0% | |
| TGAAACCGAGAACTCTGACA+GGG | - | chr3.2:11602584-11602603 | None:intergenic | 45.0% | |
| TGAGGATGAAGATGATGAGG+AGG | + | chr3.2:11600865-11600884 | MS.gene73046:CDS | 45.0% | |
| TGCGCGTCCAAATAATTAGC+AGG | - | chr3.2:11601343-11601362 | None:intergenic | 45.0% | |
| TGGGAAAGAGGAAGTTTGGT+AGG | + | chr3.2:11600510-11600529 | MS.gene73046:CDS | 45.0% | |
| TTGCATCCCTGTTCTTTGAG+GGG | - | chr3.2:11601698-11601717 | None:intergenic | 45.0% | |
| TTTCCAGTGAGTTTCCAGTG+AGG | + | chr3.2:11602187-11602206 | MS.gene73046:intron | 45.0% | |
| ! | ACAGGGATGGTTCTATTTGG+AGG | - | chr3.2:11602567-11602586 | None:intergenic | 45.0% |
| ! | CGTCTGCTATTTGCCTACAA+TGG | + | chr3.2:11602351-11602370 | MS.gene73046:intron | 45.0% |
| ! | CTCTGAGGATGAAGATGATG+AGG | + | chr3.2:11600862-11600881 | MS.gene73046:CDS | 45.0% |
| ! | CTGACAGGGATGGTTCTATT+TGG | - | chr3.2:11602570-11602589 | None:intergenic | 45.0% |
| ! | GAAGCCTTCTTTTCAGCGTT+AGG | + | chr3.2:11602725-11602744 | MS.gene73046:CDS | 45.0% |
| ! | TCCCTTGTTTGTGCTTGCAT+TGG | - | chr3.2:11603453-11603472 | None:intergenic | 45.0% |
| ! | TGGTTCTATTTGGAGGAGCA+TGG | - | chr3.2:11602560-11602579 | None:intergenic | 45.0% |
| ! | TGTGGTGGCTTCATCACTTT+TGG | - | chr3.2:11600566-11600585 | None:intergenic | 45.0% |
| !! | AATTAAATACTTAATTAAAT+AGG | - | chr3.2:11602506-11602525 | None:intergenic | 5.0% |
| !!! | ATATTATTTTCTTTTTTATT+AGG | + | chr3.2:11603171-11603190 | MS.gene73046:intron | 5.0% |
| AAATAAGAGGGTTCGGGACC+TGG | + | chr3.2:11602532-11602551 | MS.gene73046:intron | 50.0% | |
| AATAAGAGGGTTCGGGACCT+GGG | + | chr3.2:11602533-11602552 | MS.gene73046:intron | 50.0% | |
| ACCATCCCTGTCAGAGTTCT+CGG | + | chr3.2:11602576-11602595 | MS.gene73046:intron | 50.0% | |
| AGTTGAGCATGGAAGTGAGC+TGG | + | chr3.2:11600490-11600509 | MS.gene73046:CDS | 50.0% | |
| ATGGAAGTGAGCTGGGAAAG+AGG | + | chr3.2:11600498-11600517 | MS.gene73046:CDS | 50.0% | |
| CATGATGAGTACAAGGCAGC+TGG | - | chr3.2:11603598-11603617 | None:intergenic | 50.0% | |
| CTCACTGGAAATAGAGGAGG+AGG | - | chr3.2:11602178-11602197 | None:intergenic | 50.0% | |
| GAAGCCAGCTATTGGTGCAA+AGG | + | chr3.2:11602748-11602767 | MS.gene73046:CDS | 50.0% | |
| GAGACAGAGCGCAAGATCAA+GGG | + | chr3.2:11601125-11601144 | MS.gene73046:CDS | 50.0% | |
| GAGCTGGGAAAGAGGAAGTT+TGG | + | chr3.2:11600506-11600525 | MS.gene73046:CDS | 50.0% | |
| GAGGAGGATGAAATTCAGCC+AGG | + | chr3.2:11600881-11600900 | MS.gene73046:CDS | 50.0% | |
| GGCCAATGCAAGCACAAACA+AGG | + | chr3.2:11603448-11603467 | MS.gene73046:intron | 50.0% | |
| GTCTAGTACTCCCAGTAGCA+GGG | - | chr3.2:11600688-11600707 | None:intergenic | 50.0% | |
| GTGAAACCGAGAACTCTGAC+AGG | - | chr3.2:11602585-11602604 | None:intergenic | 50.0% | |
| GTTGAGCATGGAAGTGAGCT+GGG | + | chr3.2:11600491-11600510 | MS.gene73046:CDS | 50.0% | |
| TCTAGTACTCCCAGTAGCAG+GGG | - | chr3.2:11600687-11600706 | None:intergenic | 50.0% | |
| TGAAGGATCATCCTCCTCAC+TGG | - | chr3.2:11602204-11602223 | None:intergenic | 50.0% | |
| TGCAAGCACAAACAAGGGAG+AGG | + | chr3.2:11603454-11603473 | MS.gene73046:CDS | 50.0% | |
| ! | TCAAGTTGCTCAGAAAGGGC+TGG | + | chr3.2:11601671-11601690 | MS.gene73046:CDS | 50.0% |
| !! | TACTGGGAGTACTAGACGTG+TGG | + | chr3.2:11600691-11600710 | MS.gene73046:CDS | 50.0% |
| ACCGAGAACTCTGACAGGGA+TGG | - | chr3.2:11602580-11602599 | None:intergenic | 55.0% | |
| AGACAACTGCCCCTGCTACT+GGG | + | chr3.2:11600675-11600694 | MS.gene73046:CDS | 55.0% | |
| CCAGTGAGTTTCCAGTGAGG+AGG | + | chr3.2:11602190-11602209 | MS.gene73046:intron | 55.0% | |
| CCTCCTCACTGGAAACTCAC+TGG | - | chr3.2:11602193-11602212 | None:intergenic | 55.0% | |
| CGTCTAGTACTCCCAGTAGC+AGG | - | chr3.2:11600689-11600708 | None:intergenic | 55.0% | |
| GCGTTAGGGAAGCCAGCTAT+TGG | + | chr3.2:11602740-11602759 | MS.gene73046:CDS | 55.0% | |
| GCTGGACCCCTCAAAGAACA+GGG | + | chr3.2:11601689-11601708 | MS.gene73046:CDS | 55.0% | |
| GGAGACAGAGCGCAAGATCA+AGG | + | chr3.2:11601124-11601143 | MS.gene73046:CDS | 55.0% | |
| ! | ATTTGGAGGAGCATGGTCCC+AGG | - | chr3.2:11602553-11602572 | None:intergenic | 55.0% |
| ! | TCGCGTAATGGAGCCCAAGA+AGG | - | chr3.2:11603488-11603507 | None:intergenic | 55.0% |
| GAGACAACTGCCCCTGCTAC+TGG | + | chr3.2:11600674-11600693 | MS.gene73046:CDS | 60.0% | |
| GGCTGGACCCCTCAAAGAAC+AGG | + | chr3.2:11601688-11601707 | MS.gene73046:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 11600470 | 11603694 | 11600470 | ID=MS.gene73046 |
| chr3.2 | mRNA | 11600470 | 11603694 | 11600470 | ID=MS.gene73046.t1;Parent=MS.gene73046 |
| chr3.2 | exon | 11600470 | 11600988 | 11600470 | ID=MS.gene73046.t1.exon1;Parent=MS.gene73046.t1 |
| chr3.2 | CDS | 11600470 | 11600988 | 11600470 | ID=cds.MS.gene73046.t1;Parent=MS.gene73046.t1 |
| chr3.2 | exon | 11601071 | 11601172 | 11601071 | ID=MS.gene73046.t1.exon2;Parent=MS.gene73046.t1 |
| chr3.2 | CDS | 11601071 | 11601172 | 11601071 | ID=cds.MS.gene73046.t1;Parent=MS.gene73046.t1 |
| chr3.2 | exon | 11601316 | 11601397 | 11601316 | ID=MS.gene73046.t1.exon3;Parent=MS.gene73046.t1 |
| chr3.2 | CDS | 11601316 | 11601397 | 11601316 | ID=cds.MS.gene73046.t1;Parent=MS.gene73046.t1 |
| chr3.2 | exon | 11601526 | 11601545 | 11601526 | ID=MS.gene73046.t1.exon4;Parent=MS.gene73046.t1 |
| chr3.2 | CDS | 11601526 | 11601545 | 11601526 | ID=cds.MS.gene73046.t1;Parent=MS.gene73046.t1 |
| chr3.2 | exon | 11601660 | 11601720 | 11601660 | ID=MS.gene73046.t1.exon5;Parent=MS.gene73046.t1 |
| chr3.2 | CDS | 11601660 | 11601720 | 11601660 | ID=cds.MS.gene73046.t1;Parent=MS.gene73046.t1 |
| chr3.2 | exon | 11602705 | 11602769 | 11602705 | ID=MS.gene73046.t1.exon6;Parent=MS.gene73046.t1 |
| chr3.2 | CDS | 11602705 | 11602769 | 11602705 | ID=cds.MS.gene73046.t1;Parent=MS.gene73046.t1 |
| chr3.2 | exon | 11603449 | 11603559 | 11603449 | ID=MS.gene73046.t1.exon7;Parent=MS.gene73046.t1 |
| chr3.2 | CDS | 11603449 | 11603559 | 11603449 | ID=cds.MS.gene73046.t1;Parent=MS.gene73046.t1 |
| chr3.2 | exon | 11603632 | 11603694 | 11603632 | ID=MS.gene73046.t1.exon8;Parent=MS.gene73046.t1 |
| chr3.2 | CDS | 11603632 | 11603694 | 11603632 | ID=cds.MS.gene73046.t1;Parent=MS.gene73046.t1 |
| Gene Sequence |
| Protein sequence |
