AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055808


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055808.t1 MTR_1g093060 92.857 294 21 0 1 294 54 347 0.0 569
MS.gene055808.t1 MTR_6g006970 92.177 294 23 0 1 294 1 294 0.0 568
MS.gene055808.t1 MTR_2g090370 97.115 104 3 0 189 292 1 104 7.22e-71 219
MS.gene055808.t1 MTR_3g118210 42.029 207 114 6 49 251 58 262 1.28e-43 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055808.t1 AT3G17465 64.815 324 84 4 1 294 1 324 3.58e-143 406
MS.gene055808.t1 AT2G43030 39.320 206 121 4 49 251 57 261 1.62e-39 139

Find 85 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGGATGTGGATCCATTTA+TGG 0.158517 2.1:+10656506 MS.gene055808:CDS
TGACTGCACTTTGGGATAAA+TGG 0.171985 2.1:+10654286 MS.gene055808:CDS
CTTTAATCAGTAACCATAAA+TGG 0.233502 2.1:-10656519 None:intergenic
GAGTTCCAATTTCTATCCTT+TGG 0.251026 2.1:+10654316 MS.gene055808:CDS
AGTTCCAATTTCTATCCTTT+GGG 0.317691 2.1:+10654317 MS.gene055808:CDS
CATAGAACCATGGGTTCTTC+AGG 0.322897 2.1:+10655511 MS.gene055808:CDS
CTCCTGAAGCTTCCTCTTCA+TGG 0.339965 2.1:-10654614 None:intergenic
TCAACCCAAAGGATAGAAAT+TGG 0.341302 2.1:-10654321 None:intergenic
ACCCACATCAAATTTCTTGC+TGG 0.343726 2.1:-10655795 None:intergenic
TCATCTGTATCTTCATCTTC+TGG 0.348247 2.1:-10656459 None:intergenic
AAACCTCTGGTTGCTGATCT+TGG 0.349915 2.1:+10656486 MS.gene055808:CDS
CATACTGTCCGGGAACAAAA+TGG 0.364379 2.1:-10654690 None:intergenic
AACCTCTGGTTGCTGATCTT+GGG 0.368580 2.1:+10656487 MS.gene055808:CDS
ACACCAGTTCGTTGTGAATT+CGG 0.370596 2.1:-10654243 None:intergenic
GCCCTAAAATGACCCACTTC+AGG 0.379527 2.1:-10654580 None:intergenic
GATTGGTTGTGGACAGAAGA+AGG 0.380825 2.1:+10654540 MS.gene055808:intron
CTTCTGTTTACAGGGTGTAA+TGG 0.384171 2.1:+10655438 MS.gene055808:intron
AGGAATGCTTGGTCCTTGTA+AGG 0.397571 2.1:+10655531 MS.gene055808:CDS
TCCCATGAAGAGGAAGCTTC+AGG 0.402123 2.1:+10654612 MS.gene055808:CDS
ATGTGGAATGACTGCACTTT+GGG 0.405645 2.1:+10654278 MS.gene055808:CDS
GAACAATAGCCTTCCTTCTC+AGG 0.410835 2.1:-10654372 None:intergenic
ATGCAGGTCCCAGGAGCTAC+AGG 0.423543 2.1:+10656360 MS.gene055808:intron
GACTGCACTTTGGGATAAAT+GGG 0.426337 2.1:+10654287 MS.gene055808:CDS
ACAAAGTTCCCTGTAGCTCC+TGG 0.431609 2.1:-10656369 None:intergenic
AACCGCGGCAGTGGCACCAC+AGG 0.433121 2.1:-10654162 None:intergenic
TCTTCTGGCACAAAGTAAGT+TGG 0.439664 2.1:-10656444 None:intergenic
GTTCGGAGGTGGAGACTATA+CGG 0.442293 2.1:+10654190 MS.gene055808:CDS
GGTTGCTGATCTTGGGGATG+TGG 0.454818 2.1:+10656494 MS.gene055808:CDS
AATGGACCGGTATGATTTCA+AGG 0.462175 2.1:+10655456 MS.gene055808:CDS
TGATGACAACATTGTCTCTC+AGG 0.468175 2.1:+10654341 MS.gene055808:CDS
AGAAATTTGATGTGGGTGAA+AGG 0.489286 2.1:+10655801 MS.gene055808:CDS
CTTCTGGCACAAAGTAAGTT+GGG 0.491443 2.1:-10656443 None:intergenic
ACCTCTGGTTGCTGATCTTG+GGG 0.494514 2.1:+10656488 MS.gene055808:CDS
ACACCGAATTCACAACGAAC+TGG 0.499424 2.1:+10654240 MS.gene055808:CDS
ACAGGAATCACTAAAGGAAA+AGG 0.499985 2.1:+10654721 MS.gene055808:CDS
GGACTCCATCCAACCTTACA+AGG 0.504118 2.1:-10655544 None:intergenic
ATGGGTTCTTCAGGAATGCT+TGG 0.507345 2.1:+10655520 MS.gene055808:CDS
ACATTAAGCGATGTACCAAC+AGG 0.508189 2.1:-10654664 None:intergenic
GAGGCGTGGTTTCTCGTCTA+CGG 0.509855 2.1:+10654133 MS.gene055808:CDS
TGTGATGTCAACATACTGTC+CGG 0.509894 2.1:-10654701 None:intergenic
TATGTGCTTTCGAATTCCCA+TGG 0.513084 2.1:-10655492 None:intergenic
TCCTGAAGCTTCCTCTTCAT+GGG 0.524646 2.1:-10654613 None:intergenic
TGCTTCCCACCCATTCTCCC+CGG 0.526048 2.1:-10655735 None:intergenic
TTTGATGTGGGTGAAAGGCC+AGG 0.528326 2.1:+10655806 MS.gene055808:CDS
GGAAGGCTATTGTTCTCTCC+AGG 0.530451 2.1:+10654380 MS.gene055808:CDS
AAAATGCCGGGGAGAATGGG+TGG 0.532086 2.1:+10655729 MS.gene055808:CDS
AATGTGGAATGACTGCACTT+TGG 0.543439 2.1:+10654277 MS.gene055808:CDS
AAAGGAAGTATAGATGTCTC+AGG 0.543480 2.1:-10656420 None:intergenic
TACAGATGATATGAAACCTC+TGG 0.545460 2.1:+10656473 MS.gene055808:CDS
GACATCACAGGAATCACTAA+AGG 0.546953 2.1:+10654715 MS.gene055808:CDS
GAGGATGCACTTCTTCCTGT+TGG 0.552055 2.1:+10654649 MS.gene055808:CDS
CTCAAGGAGTTCCCATGAAG+AGG 0.552464 2.1:+10654602 MS.gene055808:CDS
GTTTACAGGGTGTAATGGAC+CGG 0.553779 2.1:+10655443 MS.gene055808:intron
CAAAGTTCCCTGTAGCTCCT+GGG 0.553971 2.1:-10656368 None:intergenic
GAATTCGGTGTCATCACACT+AGG 0.557489 2.1:-10654228 None:intergenic
AAGGGAGGTTCAGCATCCCA+TGG 0.557581 2.1:+10655475 MS.gene055808:CDS
ATGTGCACTATGCAGGTCCC+AGG 0.560952 2.1:+10656351 MS.gene055808:intron
TCCCTGTGGTGCCACTGCCG+CGG 0.562920 2.1:+10654160 MS.gene055808:CDS
TCAGGTCAAAACTCCTGAGA+AGG 0.567631 2.1:+10654359 MS.gene055808:CDS
ATGTGCTTTCGAATTCCCAT+GGG 0.571228 2.1:-10655491 None:intergenic
ACACTCGACAAAGCCTGAAG+TGG 0.575978 2.1:+10654567 MS.gene055808:CDS
CACTCGACAAAGCCTGAAGT+GGG 0.584112 2.1:+10654568 MS.gene055808:CDS
AACCTCCCTTGAAATCATAC+CGG 0.585348 2.1:-10655462 None:intergenic
TCAGGAGTTTCGAGTGACAG+AGG 0.587986 2.1:+10654630 MS.gene055808:CDS
GTGATGTCAACATACTGTCC+GGG 0.588163 2.1:-10654700 None:intergenic
GGCACAAAGTAAGTTGGGAA+AGG 0.599353 2.1:-10656438 None:intergenic
GACCGGTATGATTTCAAGGG+AGG 0.601360 2.1:+10655460 MS.gene055808:CDS
TCGAAAGCACATAGAACCAT+GGG 0.605881 2.1:+10655502 MS.gene055808:CDS
GGACAGTATGTTGACATCAC+AGG 0.614169 2.1:+10654703 MS.gene055808:CDS
AAATGCCGGGGAGAATGGGT+GGG 0.614539 2.1:+10655730 MS.gene055808:CDS
AGGGAGGTTCAGCATCCCAT+GGG 0.616692 2.1:+10655476 MS.gene055808:CDS
GTCAAAACTCCTGAGAAGGA+AGG 0.621009 2.1:+10654363 MS.gene055808:CDS
ATCCAGCAAGAAATTTGATG+TGG 0.622717 2.1:+10655793 MS.gene055808:CDS
TTCGAAAGCACATAGAACCA+TGG 0.623227 2.1:+10655501 MS.gene055808:CDS
AAGCATTCCTGAAGAACCCA+TGG 0.626684 2.1:-10655518 None:intergenic
ACCGCGGCAGTGGCACCACA+GGG 0.627605 2.1:-10654161 None:intergenic
TGCAGGTCCCAGGAGCTACA+GGG 0.631734 2.1:+10656361 MS.gene055808:intron
ATGGACCGGTATGATTTCAA+GGG 0.635642 2.1:+10655457 MS.gene055808:CDS
GGTGTTATAGCTGTAAAATG+TGG 0.647527 2.1:+10654261 MS.gene055808:CDS
CAATGTTGTCATCAACCCAA+AGG 0.648583 2.1:-10654332 None:intergenic
TCGTCTACGGCAATTCCCTG+TGG 0.657376 2.1:+10654146 MS.gene055808:CDS
TCCAGCAAGAAATTTGATGT+GGG 0.677547 2.1:+10655794 MS.gene055808:CDS
TCCCCAAGATCAGCAACCAG+AGG 0.694021 2.1:-10656489 None:intergenic
CGGAGGTGGAGACTATACGG+AGG 0.753244 2.1:+10654193 MS.gene055808:CDS
ACTGCACTTTGGGATAAATG+GGG 0.757943 2.1:+10654288 MS.gene055808:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAATTTATATTTAT+AGG + chr2.1:10654930-10654949 MS.gene055808:intron 0.0%
!! ATATTAAAATAGATACAAAA+TGG - chr2.1:10656249-10656268 None:intergenic 10.0%
!! AAATATATTATCACAACTAT+AGG - chr2.1:10655679-10655698 None:intergenic 15.0%
!! AAGAAAAAATACTAATCTAA+AGG - chr2.1:10655568-10655587 None:intergenic 15.0%
!! GTTTATAATGAATTATTAAG+CGG + chr2.1:10654438-10654457 MS.gene055808:intron 15.0%
!! AAAATATCAACTAAGATAGT+TGG + chr2.1:10656081-10656100 MS.gene055808:intron 20.0%
!! AAAGAACAGTAAAAAATGTA+TGG + chr2.1:10655757-10655776 MS.gene055808:CDS 20.0%
!! AAATCGTATATAAAATTACC+TGG - chr2.1:10655827-10655846 None:intergenic 20.0%
!! AAGAACAGTAAAAAATGTAT+GGG + chr2.1:10655758-10655777 MS.gene055808:CDS 20.0%
!! ACAATTGAACAAATAAATAG+TGG - chr2.1:10655087-10655106 None:intergenic 20.0%
!! AGGTAAATAAAATTTGAATG+AGG - chr2.1:10656001-10656020 None:intergenic 20.0%
!! ATTTATAAAATTGCAGCTAT+AGG + chr2.1:10655843-10655862 MS.gene055808:intron 20.0%
!!! ACATGTTTGATATTTTGTTT+TGG + chr2.1:10654514-10654533 MS.gene055808:intron 20.0%
!!! ATATTTTGTTTTGGTTAGAT+TGG + chr2.1:10654523-10654542 MS.gene055808:intron 20.0%
!!! ATTCAAATTTTATTTACCTC+TGG + chr2.1:10656002-10656021 MS.gene055808:intron 20.0%
!!! CTATCTTAGTTGATATTTTT+TGG - chr2.1:10656080-10656099 None:intergenic 20.0%
!!! TTTCCGATTTATTTACTTTT+GGG + chr2.1:10655111-10655130 MS.gene055808:intron 20.0%
!!! TTTTAAAGGTAAAAAAATGC+CGG + chr2.1:10655716-10655735 MS.gene055808:CDS 20.0%
! CAAATTATCTTCTGTTTACA+GGG + chr2.1:10655430-10655449 MS.gene055808:intron 25.0%
! GAACTTAAAAATATACACGA+GGG - chr2.1:10654475-10654494 None:intergenic 25.0%
! GCCACTTATTTATTAATAAC+TGG + chr2.1:10656269-10656288 MS.gene055808:intron 25.0%
! GCCAGTTATTAATAAATAAG+TGG - chr2.1:10656273-10656292 None:intergenic 25.0%
! TAATAACTGGCCAAAATATT+TGG + chr2.1:10656282-10656301 MS.gene055808:intron 25.0%
! TCAAATTATCTTCTGTTTAC+AGG + chr2.1:10655429-10655448 MS.gene055808:intron 25.0%
! TGAACTTAAAAATATACACG+AGG - chr2.1:10654476-10654495 None:intergenic 25.0%
! TTATAATCCATGTATGACTT+CGG + chr2.1:10655301-10655320 MS.gene055808:intron 25.0%
! TTTAAAGGTAAAAAAATGCC+GGG + chr2.1:10655717-10655736 MS.gene055808:CDS 25.0%
!! AATGAGAAGTATATAGTATG+AGG - chr2.1:10654769-10654788 None:intergenic 25.0%
!! ATGAGAAGTATATAGTATGA+GGG - chr2.1:10654768-10654787 None:intergenic 25.0%
!! GTTTCCGATTTATTTACTTT+TGG + chr2.1:10655110-10655129 MS.gene055808:intron 25.0%
AGGACATAGATCTGTAAAAA+TGG - chr2.1:10655388-10655407 None:intergenic 30.0%
AGTATTATATAGACACAAGC+AGG - chr2.1:10654870-10654889 None:intergenic 30.0%
AGTTCCAATTTCTATCCTTT+GGG + chr2.1:10654317-10654336 MS.gene055808:CDS 30.0%
ATCCCAATTATGTAATCAAC+TGG - chr2.1:10654999-10655018 None:intergenic 30.0%
ATTTGAATGAGGATTGTTTC+AGG - chr2.1:10655990-10656009 None:intergenic 30.0%
CGATATCATTAAGAAAACGA+TGG + chr2.1:10656212-10656231 MS.gene055808:intron 30.0%
TACTGCAATGTGAATTAAGT+GGG - chr2.1:10656141-10656160 None:intergenic 30.0%
TCGCCCAAAAGTAAATAAAT+CGG - chr2.1:10655117-10655136 None:intergenic 30.0%
TTAAAGGTAAAAAAATGCCG+GGG + chr2.1:10655718-10655737 MS.gene055808:CDS 30.0%
TTAACAGTCATGTAACTGAA+AGG - chr2.1:10655408-10655427 None:intergenic 30.0%
! AAGTATCCGAGTTTAAAACA+TGG + chr2.1:10655957-10655976 MS.gene055808:intron 30.0%
! AGCCAACATTCCAAATATTT+TGG - chr2.1:10656295-10656314 None:intergenic 30.0%
! CATTTTGTCGTTCAAATTTC+AGG - chr2.1:10655221-10655240 None:intergenic 30.0%
! TATATTTTTCCTCACTGTTC+AGG + chr2.1:10655692-10655711 MS.gene055808:intron 30.0%
! TTGATTTTCATGCTTTCTAG+GGG + chr2.1:10655241-10655260 MS.gene055808:intron 30.0%
!! GTTGATTTTCATGCTTTCTA+GGG + chr2.1:10655240-10655259 MS.gene055808:intron 30.0%
!! TTTGAGCCATGTTTTAAACT+CGG - chr2.1:10655966-10655985 None:intergenic 30.0%
!!! AGTTTTTTTTTTTTCCCCGA+GGG - chr2.1:10655888-10655907 None:intergenic 30.0%
!!! ATTTTTTGGTCTTAAACCTC+CGG - chr2.1:10656066-10656085 None:intergenic 30.0%
!!! TGTTGATTTTCATGCTTTCT+AGG + chr2.1:10655239-10655258 MS.gene055808:intron 30.0%
AAACCTTCCATCGAGTAAAT+CGG + chr2.1:10655345-10655364 MS.gene055808:intron 35.0%
ACAGGAATCACTAAAGGAAA+AGG + chr2.1:10654721-10654740 MS.gene055808:CDS 35.0%
ACGAAAAAAGCTATCCTCTT+GGG - chr2.1:10654971-10654990 None:intergenic 35.0%
AGAAATTTGATGTGGGTGAA+AGG + chr2.1:10655801-10655820 MS.gene055808:CDS 35.0%
ATCCAGCAAGAAATTTGATG+TGG + chr2.1:10655793-10655812 MS.gene055808:CDS 35.0%
ATTTACTCGATGGAAGGTTT+CGG - chr2.1:10655345-10655364 None:intergenic 35.0%
ATTTGATCGAGAGAACGAAA+TGG - chr2.1:10654412-10654431 None:intergenic 35.0%
GAGTTCCAATTTCTATCCTT+TGG + chr2.1:10654316-10654335 MS.gene055808:CDS 35.0%
GGCCAGTTGATTACATAATT+GGG + chr2.1:10654994-10655013 MS.gene055808:intron 35.0%
GGGAGGAGATAAAAGAATAA+CGG - chr2.1:10655182-10655201 None:intergenic 35.0%
GTACTGCAATGTGAATTAAG+TGG - chr2.1:10656142-10656161 None:intergenic 35.0%
TAAAATTGCAGCTATAGGAC+AGG + chr2.1:10655848-10655867 MS.gene055808:intron 35.0%
TACAGATGATATGAAACCTC+TGG + chr2.1:10656473-10656492 MS.gene055808:CDS 35.0%
TACGAAAAAAGCTATCCTCT+TGG - chr2.1:10654972-10654991 None:intergenic 35.0%
TCAACCCAAAGGATAGAAAT+TGG - chr2.1:10654324-10654343 None:intergenic 35.0%
TCATCTGTATCTTCATCTTC+TGG - chr2.1:10656462-10656481 None:intergenic 35.0%
TCCAGCAAGAAATTTGATGT+GGG + chr2.1:10655794-10655813 MS.gene055808:CDS 35.0%
TTAAAACGAATTACCCCAAG+AGG + chr2.1:10654954-10654973 MS.gene055808:intron 35.0%
TTCAGTAGTTTCAACTGATC+AGG + chr2.1:10655146-10655165 MS.gene055808:intron 35.0%
TTGTCGTTCAAATTTCAGGA+GGG - chr2.1:10655217-10655236 None:intergenic 35.0%
TTTGTCGTTCAAATTTCAGG+AGG - chr2.1:10655218-10655237 None:intergenic 35.0%
! AAAAACTGATTCAACTCGAG+TGG + chr2.1:10655901-10655920 MS.gene055808:intron 35.0%
! AAAGGAAGTATAGATGTCTC+AGG - chr2.1:10656423-10656442 None:intergenic 35.0%
! CACTAAAGGAAAAGGTTTTC+AGG + chr2.1:10654729-10654748 MS.gene055808:CDS 35.0%
! CTTTAAAAACCTGAACAGTG+AGG - chr2.1:10655704-10655723 None:intergenic 35.0%
! GGCCAAAATATTTGGAATGT+TGG + chr2.1:10656290-10656309 MS.gene055808:intron 35.0%
! GGTGTTATAGCTGTAAAATG+TGG + chr2.1:10654261-10654280 MS.gene055808:CDS 35.0%
! TGATTTTCATGCTTTCTAGG+GGG + chr2.1:10655242-10655261 MS.gene055808:intron 35.0%
!! CTCACTGTTCAGGTTTTTAA+AGG + chr2.1:10655702-10655721 MS.gene055808:intron 35.0%
!! TTTGGAATGTTGGCTTTATG+CGG + chr2.1:10656300-10656319 MS.gene055808:intron 35.0%
!!! AGAGGATAGCTTTTTTCGTA+AGG + chr2.1:10654972-10654991 MS.gene055808:intron 35.0%
!!! CAGTTTTTTTTTTTTCCCCG+AGG - chr2.1:10655889-10655908 None:intergenic 35.0%
!!! GAGGATAGCTTTTTTCGTAA+GGG + chr2.1:10654973-10654992 MS.gene055808:intron 35.0%
!!! GTTTTTTTTTTTTCCCCGAG+GGG - chr2.1:10655887-10655906 None:intergenic 35.0%
!!! TGTTTTGGTTAGATTGGTTG+TGG + chr2.1:10654529-10654548 MS.gene055808:intron 35.0%
AAAAAAATGCCGGGGAGAAT+GGG + chr2.1:10655726-10655745 MS.gene055808:CDS 40.0%
AACCTCCCTTGAAATCATAC+CGG - chr2.1:10655465-10655484 None:intergenic 40.0%
AACCTTCCATCGAGTAAATC+GGG + chr2.1:10655346-10655365 MS.gene055808:intron 40.0%
AATGGACCGGTATGATTTCA+AGG + chr2.1:10655456-10655475 MS.gene055808:CDS 40.0%
AATGTGGAATGACTGCACTT+TGG + chr2.1:10654277-10654296 MS.gene055808:CDS 40.0%
AATTGGTCGGCAACAGTAAT+AGG + chr2.1:10655042-10655061 MS.gene055808:intron 40.0%
ACACCAGTTCGTTGTGAATT+CGG - chr2.1:10654246-10654265 None:intergenic 40.0%
ACATTAAGCGATGTACCAAC+AGG - chr2.1:10654667-10654686 None:intergenic 40.0%
ACCCACATCAAATTTCTTGC+TGG - chr2.1:10655798-10655817 None:intergenic 40.0%
ATGGACCGGTATGATTTCAA+GGG + chr2.1:10655457-10655476 MS.gene055808:CDS 40.0%
ATGTGCTTTCGAATTCCCAT+GGG - chr2.1:10655494-10655513 None:intergenic 40.0%
ATGTGGAATGACTGCACTTT+GGG + chr2.1:10654278-10654297 MS.gene055808:CDS 40.0%
CAATGTTGTCATCAACCCAA+AGG - chr2.1:10654335-10654354 None:intergenic 40.0%
CGAAAAAAGCTATCCTCTTG+GGG - chr2.1:10654970-10654989 None:intergenic 40.0%
CTTCTGGCACAAAGTAAGTT+GGG - chr2.1:10656446-10656465 None:intergenic 40.0%
CTTCTGTTTACAGGGTGTAA+TGG + chr2.1:10655438-10655457 MS.gene055808:intron 40.0%
GACATCACAGGAATCACTAA+AGG + chr2.1:10654715-10654734 MS.gene055808:CDS 40.0%
GGCTGAACTGTAGATTACTA+GGG + chr2.1:10656023-10656042 MS.gene055808:intron 40.0%
GGGCCAGTTGATTACATAAT+TGG + chr2.1:10654993-10655012 MS.gene055808:intron 40.0%
TAAAAAAATGCCGGGGAGAA+TGG + chr2.1:10655725-10655744 MS.gene055808:CDS 40.0%
TAATTGCCCGATTTACTCGA+TGG - chr2.1:10655355-10655374 None:intergenic 40.0%
TATGTGCTTTCGAATTCCCA+TGG - chr2.1:10655495-10655514 None:intergenic 40.0%
TATTACTGTTGCCGACCAAT+TGG - chr2.1:10655043-10655062 None:intergenic 40.0%
TCAGGAGGGGTCAAATAAAA+CGG - chr2.1:10655203-10655222 None:intergenic 40.0%
TCTTCTGGCACAAAGTAAGT+TGG - chr2.1:10656447-10656466 None:intergenic 40.0%
TGATGACAACATTGTCTCTC+AGG + chr2.1:10654341-10654360 MS.gene055808:CDS 40.0%
TGGCTGAACTGTAGATTACT+AGG + chr2.1:10656022-10656041 MS.gene055808:intron 40.0%
TGTCGTTCAAATTTCAGGAG+GGG - chr2.1:10655216-10655235 None:intergenic 40.0%
TGTGATGTCAACATACTGTC+CGG - chr2.1:10654704-10654723 None:intergenic 40.0%
TGTTTCGATCCACATCCAAT+TGG + chr2.1:10655025-10655044 MS.gene055808:intron 40.0%
TTGTATGATGTGCACTATGC+AGG + chr2.1:10656344-10656363 MS.gene055808:intron 40.0%
! AACTATTTTGTATCCCCTCG+GGG + chr2.1:10655871-10655890 MS.gene055808:intron 40.0%
! GAACTATTTTGTATCCCCTC+GGG + chr2.1:10655870-10655889 MS.gene055808:intron 40.0%
! GAAGTATCCGAAGTCATACA+TGG - chr2.1:10655311-10655330 None:intergenic 40.0%
! GGAACTATTTTGTATCCCCT+CGG + chr2.1:10655869-10655888 MS.gene055808:intron 40.0%
! TCGAAAGCACATAGAACCAT+GGG + chr2.1:10655502-10655521 MS.gene055808:CDS 40.0%
! TTCGAAAGCACATAGAACCA+TGG + chr2.1:10655501-10655520 MS.gene055808:CDS 40.0%
!! AATGTTCGCCATTTTGTTCC+CGG + chr2.1:10654682-10654701 MS.gene055808:CDS 40.0%
!! ACTGCACTTTGGGATAAATG+GGG + chr2.1:10654288-10654307 MS.gene055808:CDS 40.0%
!! GACTGCACTTTGGGATAAAT+GGG + chr2.1:10654287-10654306 MS.gene055808:CDS 40.0%
!! TGACTGCACTTTGGGATAAA+TGG + chr2.1:10654286-10654305 MS.gene055808:CDS 40.0%
!! TTGGAATGTTGGCTTTATGC+GGG + chr2.1:10656301-10656320 MS.gene055808:intron 40.0%
AAACCTCTGGTTGCTGATCT+TGG + chr2.1:10656486-10656505 MS.gene055808:CDS 45.0%
AACCTCTGGTTGCTGATCTT+GGG + chr2.1:10656487-10656506 MS.gene055808:CDS 45.0%
AAGCATTCCTGAAGAACCCA+TGG - chr2.1:10655521-10655540 None:intergenic 45.0%
ACACCGAATTCACAACGAAC+TGG + chr2.1:10654240-10654259 MS.gene055808:CDS 45.0%
AGGAATGCTTGGTCCTTGTA+AGG + chr2.1:10655531-10655550 MS.gene055808:CDS 45.0%
ATGCTTGGTCCTTGTAAGGT+TGG + chr2.1:10655535-10655554 MS.gene055808:intron 45.0%
ATGGGTTCTTCAGGAATGCT+TGG + chr2.1:10655520-10655539 MS.gene055808:CDS 45.0%
CAGGAGGGGTCAAATAAAAC+GGG - chr2.1:10655202-10655221 None:intergenic 45.0%
CATACTGTCCGGGAACAAAA+TGG - chr2.1:10654693-10654712 None:intergenic 45.0%
CATAGAACCATGGGTTCTTC+AGG + chr2.1:10655511-10655530 MS.gene055808:CDS 45.0%
GAACAATAGCCTTCCTTCTC+AGG - chr2.1:10654375-10654394 None:intergenic 45.0%
GGACAGTATGTTGACATCAC+AGG + chr2.1:10654703-10654722 MS.gene055808:CDS 45.0%
GTAATCTACAGTTCAGCCAG+AGG - chr2.1:10656021-10656040 None:intergenic 45.0%
GTCAAAACTCCTGAGAAGGA+AGG + chr2.1:10654363-10654382 MS.gene055808:CDS 45.0%
GTGATGTCAACATACTGTCC+GGG - chr2.1:10654703-10654722 None:intergenic 45.0%
TCAGGTCAAAACTCCTGAGA+AGG + chr2.1:10654359-10654378 MS.gene055808:CDS 45.0%
TCCTGAAGCTTCCTCTTCAT+GGG - chr2.1:10654616-10654635 None:intergenic 45.0%
TCGATCCACATCCAATTGGT+CGG + chr2.1:10655029-10655048 MS.gene055808:intron 45.0%
TGGGGATGTGGATCCATTTA+TGG + chr2.1:10656506-10656525 MS.gene055808:CDS 45.0%
TTGGTCCTTGTAAGGTTGGA+TGG + chr2.1:10655539-10655558 MS.gene055808:intron 45.0%
! GATTGGTTGTGGACAGAAGA+AGG + chr2.1:10654540-10654559 MS.gene055808:intron 45.0%
! GGCACAAAGTAAGTTGGGAA+AGG - chr2.1:10656441-10656460 None:intergenic 45.0%
!! AGCCTGAAGTGGGTCATTTT+AGG + chr2.1:10654578-10654597 MS.gene055808:CDS 45.0%
!! GAATTCGGTGTCATCACACT+AGG - chr2.1:10654231-10654250 None:intergenic 45.0%
!! GCCTGAAGTGGGTCATTTTA+GGG + chr2.1:10654579-10654598 MS.gene055808:CDS 45.0%
!! GTTTACAGGGTGTAATGGAC+CGG + chr2.1:10655443-10655462 MS.gene055808:intron 45.0%
!! ATAAAAAATTAAAATCATTA+TGG - chr2.1:10656107-10656126 None:intergenic 5.0%
!! TATTATTTATAAAGAAAAAA+AGG - chr2.1:10654792-10654811 None:intergenic 5.0%
ACAAAGTTCCCTGTAGCTCC+TGG - chr2.1:10656372-10656391 None:intergenic 50.0%
ACACTCGACAAAGCCTGAAG+TGG + chr2.1:10654567-10654586 MS.gene055808:CDS 50.0%
ACCTCCGAACTCAAAAACCG+CGG - chr2.1:10654180-10654199 None:intergenic 50.0%
ACCTCTGGTTGCTGATCTTG+GGG + chr2.1:10656488-10656507 MS.gene055808:CDS 50.0%
AGAACGAAATGGAACGCACC+TGG - chr2.1:10654401-10654420 None:intergenic 50.0%
CAAAGTTCCCTGTAGCTCCT+GGG - chr2.1:10656371-10656390 None:intergenic 50.0%
CACTCGACAAAGCCTGAAGT+GGG + chr2.1:10654568-10654587 MS.gene055808:CDS 50.0%
CTCAAGGAGTTCCCATGAAG+AGG + chr2.1:10654602-10654621 MS.gene055808:CDS 50.0%
CTCCTGAAGCTTCCTCTTCA+TGG - chr2.1:10654617-10654636 None:intergenic 50.0%
GACCGGTATGATTTCAAGGG+AGG + chr2.1:10655460-10655479 MS.gene055808:CDS 50.0%
GAGGATGCACTTCTTCCTGT+TGG + chr2.1:10654649-10654668 MS.gene055808:CDS 50.0%
GAGGGGTCAAATAAAACGGG+AGG - chr2.1:10655199-10655218 None:intergenic 50.0%
GCCCTAAAATGACCCACTTC+AGG - chr2.1:10654583-10654602 None:intergenic 50.0%
GGAAGGCTATTGTTCTCTCC+AGG + chr2.1:10654380-10654399 MS.gene055808:CDS 50.0%
GGACTCCATCCAACCTTACA+AGG - chr2.1:10655547-10655566 None:intergenic 50.0%
GTTCGGAGGTGGAGACTATA+CGG + chr2.1:10654190-10654209 MS.gene055808:CDS 50.0%
TACTAGGGTTCCTTCCCTCA+CGG + chr2.1:10656038-10656057 MS.gene055808:intron 50.0%
TCCCATGAAGAGGAAGCTTC+AGG + chr2.1:10654612-10654631 MS.gene055808:CDS 50.0%
TGCCCGATTTACTCGATGGA+AGG - chr2.1:10655351-10655370 None:intergenic 50.0%
TGTTGCCGACCAATTGGATG+TGG - chr2.1:10655037-10655056 None:intergenic 50.0%
TTAAACCTCCGGTTCCGTGA+GGG - chr2.1:10656055-10656074 None:intergenic 50.0%
TTTGATGTGGGTGAAAGGCC+AGG + chr2.1:10655806-10655825 MS.gene055808:CDS 50.0%
! TCAGGAGTTTCGAGTGACAG+AGG + chr2.1:10654630-10654649 MS.gene055808:CDS 50.0%
!!! ACTGCCGCGGTTTTTGAGTT+CGG + chr2.1:10654173-10654192 MS.gene055808:CDS 50.0%
!!! GTGGGTCATTTTAGGGCTCA+AGG + chr2.1:10654586-10654605 MS.gene055808:CDS 50.0%
AAAATGCCGGGGAGAATGGG+TGG + chr2.1:10655729-10655748 MS.gene055808:CDS 55.0%
AAATGCCGGGGAGAATGGGT+GGG + chr2.1:10655730-10655749 MS.gene055808:CDS 55.0%
AAGGGAGGTTCAGCATCCCA+TGG + chr2.1:10655475-10655494 MS.gene055808:CDS 55.0%
AGGGAGGTTCAGCATCCCAT+GGG + chr2.1:10655476-10655495 MS.gene055808:CDS 55.0%
ATGTGCACTATGCAGGTCCC+AGG + chr2.1:10656351-10656370 MS.gene055808:intron 55.0%
CTTAAACCTCCGGTTCCGTG+AGG - chr2.1:10656056-10656075 None:intergenic 55.0%
GAACTCAAAAACCGCGGCAG+TGG - chr2.1:10654174-10654193 None:intergenic 55.0%
GAGGCGTGGTTTCTCGTCTA+CGG + chr2.1:10654133-10654152 MS.gene055808:CDS 55.0%
GGTTGCTGATCTTGGGGATG+TGG + chr2.1:10656494-10656513 MS.gene055808:CDS 55.0%
TCCCCAAGATCAGCAACCAG+AGG - chr2.1:10656492-10656511 None:intergenic 55.0%
TCGTCTACGGCAATTCCCTG+TGG + chr2.1:10654146-10654165 MS.gene055808:CDS 55.0%
!!! GCGGTTTTTGAGTTCGGAGG+TGG + chr2.1:10654179-10654198 MS.gene055808:CDS 55.0%
ATGCAGGTCCCAGGAGCTAC+AGG + chr2.1:10656360-10656379 MS.gene055808:intron 60.0%
CGGAGGTGGAGACTATACGG+AGG + chr2.1:10654193-10654212 MS.gene055808:CDS 60.0%
GGTTCCTTCCCTCACGGAAC+CGG + chr2.1:10656044-10656063 MS.gene055808:intron 60.0%
TGCAGGTCCCAGGAGCTACA+GGG + chr2.1:10656361-10656380 MS.gene055808:intron 60.0%
TGCTTCCCACCCATTCTCCC+CGG - chr2.1:10655738-10655757 None:intergenic 60.0%
!! GCTAGCGTTTTCGAGAGGCG+TGG + chr2.1:10654119-10654138 MS.gene055808:CDS 60.0%
!!! GCCGCGGTTTTTGAGTTCGG+AGG + chr2.1:10654176-10654195 MS.gene055808:CDS 60.0%
ACCTCCGGTTCCGTGAGGGA+AGG - chr2.1:10656051-10656070 None:intergenic 65.0%
TCCTTCCCTCACGGAACCGG+AGG + chr2.1:10656047-10656066 MS.gene055808:intron 65.0%
AACCGCGGCAGTGGCACCAC+AGG - chr2.1:10654165-10654184 None:intergenic 70.0%
ACCGCGGCAGTGGCACCACA+GGG - chr2.1:10654164-10654183 None:intergenic 70.0%
!! TCCCTGTGGTGCCACTGCCG+CGG + chr2.1:10654160-10654179 MS.gene055808:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 10654117 10656539 10654117 ID=MS.gene055808
chr2.1 mRNA 10654117 10656539 10654117 ID=MS.gene055808.t1;Parent=MS.gene055808
chr2.1 exon 10654117 10654401 10654117 ID=MS.gene055808.t1.exon1;Parent=MS.gene055808.t1
chr2.1 CDS 10654117 10654401 10654117 ID=cds.MS.gene055808.t1;Parent=MS.gene055808.t1
chr2.1 exon 10654541 10654750 10654541 ID=MS.gene055808.t1.exon2;Parent=MS.gene055808.t1
chr2.1 CDS 10654541 10654750 10654541 ID=cds.MS.gene055808.t1;Parent=MS.gene055808.t1
chr2.1 exon 10655451 10655552 10655451 ID=MS.gene055808.t1.exon3;Parent=MS.gene055808.t1
chr2.1 CDS 10655451 10655552 10655451 ID=cds.MS.gene055808.t1;Parent=MS.gene055808.t1
chr2.1 exon 10655714 10655827 10655714 ID=MS.gene055808.t1.exon4;Parent=MS.gene055808.t1
chr2.1 CDS 10655714 10655827 10655714 ID=cds.MS.gene055808.t1;Parent=MS.gene055808.t1
chr2.1 exon 10656366 10656539 10656366 ID=MS.gene055808.t1.exon5;Parent=MS.gene055808.t1
chr2.1 CDS 10656366 10656539 10656366 ID=cds.MS.gene055808.t1;Parent=MS.gene055808.t1
Gene Sequence

>MS.gene055808

ATGCTAGCGTTTTCGAGAGGCGTGGTTTCTCGTCTACGGCAATTCCCTGTGGTGCCACTGCCGCGGTTTTTGAGTTCGGAGGTGGAGACTATACGGAGGATTGAAGCAAAACCTAGTGTGATGACACCGAATTCACAACGAACTGGTGTTATAGCTGTAAAATGTGGAATGACTGCACTTTGGGATAAATGGGGTGCTAGAGTTCCAATTTCTATCCTTTGGGTTGATGACAACATTGTCTCTCAGGTCAAAACTCCTGAGAAGGAAGGCTATTGTTCTCTCCAGGTGCGTTCCATTTCGTTCTCTCGATCAAATTTTAATGTTTATAATGAATTATTAAGCGGAGTTGCTTGTTCCCTCGTGTATATTTTTAAGTTCAATGTGTATCTAATTATAGACATGTTTGATATTTTGTTTTGGTTAGATTGGTTGTGGACAGAAGAAGGAGAAACACTCGACAAAGCCTGAAGTGGGTCATTTTAGGGCTCAAGGAGTTCCCATGAAGAGGAAGCTTCAGGAGTTTCGAGTGACAGAGGATGCACTTCTTCCTGTTGGTACATCGCTTAATGTTCGCCATTTTGTTCCCGGACAGTATGTTGACATCACAGGAATCACTAAAGGAAAAGGTTTTCAGGTGTTTTTCTCTTTCCCTCATACTATATACTTCTCATTCCTTTTTTTCTTTATAAATAATAATCTCTCTCTTACATTGTTTATGTAGTATTTGTACATGTTTATGCTTGTATTGTTCCTGCTTGTGTCTATATAATACTTGAGTTGAGTTGAAATGCTTAGTTATTATTTTGTCAAAGAATTATTAAATTTATATTTATAGGATTAAAACGAATTACCCCAAGAGGATAGCTTTTTTCGTAAGGGCCAGTTGATTACATAATTGGGATTTTAAGTGTTTCGATCCACATCCAATTGGTCGGCAACAGTAATAGGTTCACAAATGCATTATATGCCACTATTTATTTGTTCAATTGTTTTGTTTCCGATTTATTTACTTTTGGGCGATCATTCATGTTCAGTAGTTTCAACTGATCAGGTGATGTTGCACCGTTATTCTTTTATCTCCTCCCGTTTTATTTGACCCCTCCTGAAATTTGAACGACAAAATGTTGATTTTCATGCTTTCTAGGGGGTGTTTTTTTGTTTATTTTTTCTGTTTCTTATTTTATTTATAATCCATGTATGACTTCGGATACTTCTCTGTTTCATGCCGAAACCTTCCATCGAGTAAATCGGGCAATTACATGATACTACCATTTTTACAGATCTATGTCCTTTCAGTTACATGACTGTTAATTCAAATTATCTTCTGTTTACAGGGTGTAATGGACCGGTATGATTTCAAGGGAGGTTCAGCATCCCATGGGAATTCGAAAGCACATAGAACCATGGGTTCTTCAGGAATGCTTGGTCCTTGTAAGGTTGGATGGAGTCCTTTAGATTAGTATTTTTTCTTAATTAATACATCTTTCTGTATTTGTATATATTGAAAATATGTTTGATTGACTGTCTGTAAGTTTATTTCTTTACATTTATGTTTCTCACCTATAGTTGTGATAATATATTTTTCCTCACTGTTCAGGTTTTTAAAGGTAAAAAAATGCCGGGGAGAATGGGTGGGAAGCAAAGAACAGTAAAAAATGTATGGGTCTACAAAATTGATCCAGCAAGAAATTTGATGTGGGTGAAAGGCCAGGTAATTTTATATACGATTTATAAAATTGCAGCTATAGGACAGGAACTATTTTGTATCCCCTCGGGGAAAAAAAAAAAACTGATTCAACTCGAGTGGTTAAAGAGCTTCAGTTAAAGATGAATCGATCTGAAGTATCCGAGTTTAAAACATGGCTCAAAGCCTGAAACAATCCTCATTCAAATTTTATTTACCTCTGGCTGAACTGTAGATTACTAGGGTTCCTTCCCTCACGGAACCGGAGGTTTAAGACCAAAAAATATCAACTAAGATAGTTGGCCATAATGATTTTAATTTTTTATTAAATTTGAATCCCACTTAATTCACATTGCAGTACTGCTAGTATAGAAACTTGTATGTTTATATGAGCTAAGAAATTTTGTATGACGATATCATTAAGAAAACGATGGTGAATCAGTAACCATTTTGTATCTATTTTAATATGCCACTTATTTATTAATAACTGGCCAAAATATTTGGAATGTTGGCTTTATGCGGGCTGATTGCTTTTCTTTGTAATTGTATGATGTGCACTATGCAGGTCCCAGGAGCTACAGGGAACTTTGTTTTTATAAAAGATGCAGTTTATGAAAAACCTGAGACATCTATACTTCCTTTCCCAACTTACTTTGTGCCAGAAGATGAAGATACAGATGATATGAAACCTCTGGTTGCTGATCTTGGGGATGTGGATCCATTTATGGTTACTGATTAA

Protein sequence

>MS.gene055808.t1

MLAFSRGVVSRLRQFPVVPLPRFLSSEVETIRRIEAKPSVMTPNSQRTGVIAVKCGMTALWDKWGARVPISILWVDDNIVSQVKTPEKEGYCSLQIGCGQKKEKHSTKPEVGHFRAQGVPMKRKLQEFRVTEDALLPVGTSLNVRHFVPGQYVDITGITKGKGFQGVMDRYDFKGGSASHGNSKAHRTMGSSGMLGPCKVFKGKKMPGRMGGKQRTVKNVWVYKIDPARNLMWVKGQVPGATGNFVFIKDAVYEKPETSILPFPTYFVPEDEDTDDMKPLVADLGDVDPFMVTD