Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73217.t1 | XP_013454961.1 | 97.9 | 757 | 15 | 1 | 1 | 757 | 1 | 756 | 0.00E+00 | 1427.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73217.t1 | O04015 | 79.3 | 709 | 147 | 0 | 44 | 752 | 4 | 712 | 0.0e+00 | 1094.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73217.t1 | G8IJI0 | 97.9 | 757 | 15 | 1 | 1 | 757 | 1 | 756 | 0.0e+00 | 1427.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene73217 | MS.gene99360 | PPI |
| MS.gene03802 | MS.gene73217 | PPI |
| MS.gene73119 | MS.gene73217 | PPI |
| MS.gene035805 | MS.gene73217 | PPI |
| MS.gene78111 | MS.gene73217 | PPI |
| MS.gene064542 | MS.gene73217 | PPI |
| MS.gene66800 | MS.gene73217 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73217.t1 | MTR_4g020110 | 97.886 | 757 | 15 | 1 | 1 | 757 | 1 | 756 | 0.0 | 1508 |
| MS.gene73217.t1 | MTR_4g020110 | 97.372 | 761 | 15 | 2 | 1 | 757 | 1 | 760 | 0.0 | 1503 |
| MS.gene73217.t1 | MTR_4g020110 | 97.693 | 737 | 14 | 2 | 1 | 737 | 1 | 734 | 0.0 | 1459 |
| MS.gene73217.t1 | MTR_4g020110 | 97.339 | 714 | 18 | 1 | 44 | 757 | 1 | 713 | 0.0 | 1415 |
| MS.gene73217.t1 | MTR_4g020110 | 98.033 | 661 | 12 | 1 | 1 | 661 | 1 | 660 | 0.0 | 1314 |
| MS.gene73217.t1 | MTR_7g063650 | 84.034 | 714 | 114 | 0 | 44 | 757 | 1 | 714 | 0.0 | 1222 |
| MS.gene73217.t1 | MTR_3g069080 | 75.843 | 712 | 172 | 0 | 41 | 752 | 1 | 712 | 0.0 | 1092 |
| MS.gene73217.t1 | MTR_4g095062 | 56.436 | 101 | 39 | 3 | 606 | 704 | 233 | 330 | 1.48e-24 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73217.t1 | AT3G55610 | 74.438 | 712 | 182 | 0 | 41 | 752 | 1 | 712 | 0.0 | 1079 |
| MS.gene73217.t1 | AT2G39800 | 74.895 | 717 | 180 | 0 | 41 | 757 | 1 | 717 | 0.0 | 1077 |
| MS.gene73217.t1 | AT2G39800 | 74.895 | 717 | 180 | 0 | 41 | 757 | 1 | 717 | 0.0 | 1077 |
| MS.gene73217.t1 | AT2G39800 | 74.477 | 717 | 180 | 1 | 41 | 757 | 1 | 714 | 0.0 | 1063 |
| MS.gene73217.t1 | AT2G39800 | 74.593 | 614 | 156 | 0 | 144 | 757 | 1 | 614 | 0.0 | 917 |
| MS.gene73217.t1 | AT3G55610 | 72.947 | 621 | 168 | 0 | 41 | 661 | 1 | 621 | 0.0 | 916 |
Find 176 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAGCATAATCGTATTT+TGG | 0.184262 | 4.1:+77901545 | None:intergenic |
| GGGAATGGCTTATTACTTAA+AGG | 0.220041 | 4.1:-77900435 | MS.gene73217:CDS |
| TTCTTGCCTTCTCAGGCTTC+AGG | 0.229467 | 4.1:+77901458 | None:intergenic |
| ACAGTCAATGGCAAACTTAT+TGG | 0.232642 | 4.1:-77900244 | MS.gene73217:CDS |
| CATCAAAGAGAAATTACTTT+TGG | 0.238637 | 4.1:-77902710 | MS.gene73217:CDS |
| TTTGGTGATGGTGGCAAATT+TGG | 0.260202 | 4.1:+77909875 | None:intergenic |
| GTATGAATTAATTTCGAGTT+TGG | 0.278135 | 4.1:+77902749 | None:intergenic |
| GCTAGTTACCATTGCATTGC+AGG | 0.289485 | 4.1:+77899834 | None:intergenic |
| AGTTTGCCATTGACTGTATC+TGG | 0.296299 | 4.1:+77900250 | None:intergenic |
| TACGATTATGCTTGAAAATC+AGG | 0.302996 | 4.1:-77901539 | MS.gene73217:CDS |
| GCTAGCTGACGAACTCGTTT+TGG | 0.304496 | 4.1:-77900745 | MS.gene73217:CDS |
| CAGTCAATGGCAAACTTATT+GGG | 0.316899 | 4.1:-77900243 | MS.gene73217:CDS |
| TCGCAGCACGTAACAGTTCT+AGG | 0.317783 | 4.1:-77901982 | MS.gene73217:CDS |
| GGAGAAAATATCATGTCCTT+TGG | 0.320472 | 4.1:-77900724 | MS.gene73217:CDS |
| TCAAGGCTATGAAGTTATAT+TGG | 0.328978 | 4.1:-77904143 | MS.gene73217:CDS |
| TTTAGCACGGCACTAGCTTT+TGG | 0.332476 | 4.1:+77899318 | None:intergenic |
| ACTTCAGGTGCTGTTGGTCT+TGG | 0.332977 | 4.1:-77904118 | MS.gene73217:CDS |
| AGATGGCAAAGCAGATAGTT+AGG | 0.336883 | 4.1:-77899882 | MS.gene73217:CDS |
| ATATTTACCTTTAGTAGATC+TGG | 0.344371 | 4.1:+77900196 | None:intergenic |
| GTAAGACCGCATTTGATCTT+CGG | 0.344839 | 4.1:+77900400 | None:intergenic |
| GCTGTTTGTGCTGCTCATGC+TGG | 0.345250 | 4.1:-77902638 | MS.gene73217:CDS |
| CACTGCCTGCAGGATTCTTC+TGG | 0.349022 | 4.1:-77902884 | MS.gene73217:intron |
| TAAGACCGCATTTGATCTTC+GGG | 0.350517 | 4.1:+77900401 | None:intergenic |
| TATGAATTAATTTCGAGTTT+GGG | 0.350835 | 4.1:+77902750 | None:intergenic |
| GAAGTTATATTGGTGACTTC+AGG | 0.351606 | 4.1:-77904133 | MS.gene73217:CDS |
| CTCTTCAAAATCTGACCAAT+TGG | 0.353373 | 4.1:+77901229 | None:intergenic |
| TTAGTAAGGGGTACCTCAAT+AGG | 0.354075 | 4.1:+77909852 | None:intergenic |
| GTGCTTCAAGGGGAGAAAAT+AGG | 0.364668 | 4.1:-77902073 | MS.gene73217:CDS |
| GCCTTCCATGTTTATTTATG+TGG | 0.369341 | 4.1:+77899208 | None:intergenic |
| AAGACTTCGATACCGCAAAT+TGG | 0.377344 | 4.1:-77904089 | MS.gene73217:CDS |
| GAGAAAATATCATGTCCTTT+GGG | 0.383223 | 4.1:-77900723 | MS.gene73217:CDS |
| ACCTGCTATTTGCCAATTTG+CGG | 0.383241 | 4.1:+77904077 | None:intergenic |
| TTCATAGAGATGCACATCTA+TGG | 0.384701 | 4.1:-77902042 | MS.gene73217:CDS |
| GATGGAGCACGCTTTGGACT+AGG | 0.385831 | 4.1:-77897997 | MS.gene73217:CDS |
| AAAGGTCAGCTTTAAGTTCA+AGG | 0.387629 | 4.1:+77902822 | None:intergenic |
| CTTGCAGGTGTTCAAATATA+TGG | 0.392654 | 4.1:-77899345 | MS.gene73217:intron |
| ATTTAAGTTCTTGCCTTCTC+AGG | 0.397732 | 4.1:+77901451 | None:intergenic |
| CATCACTTAATAAAACTAAA+AGG | 0.399701 | 4.1:+77902804 | None:intergenic |
| AAATACCTAGTTATAACAAC+AGG | 0.400007 | 4.1:+77902611 | None:intergenic |
| TCGACCTGATGCTCTTGTTC+AGG | 0.404694 | 4.1:-77900676 | MS.gene73217:intron |
| TTATTCCATTACCATTAGTA+AGG | 0.405027 | 4.1:+77909838 | None:intergenic |
| TGTGCGTGTGCTGGCAGATA+TGG | 0.405412 | 4.1:-77901257 | MS.gene73217:CDS |
| GTTGCTGATGCTGTGGCAGC+TGG | 0.405518 | 4.1:-77901511 | MS.gene73217:CDS |
| GTCGAGACTCAAATATTATC+AGG | 0.406153 | 4.1:+77900694 | None:intergenic |
| AAGCCACAGGGTGACCTTGA+TGG | 0.406220 | 4.1:-77903612 | MS.gene73217:CDS |
| AACCTTCACGTTGGAGTTCA+AGG | 0.410020 | 4.1:+77899620 | None:intergenic |
| GGTTAAGCGTTTGATTGTTA+AGG | 0.411046 | 4.1:-77909742 | MS.gene73217:intron |
| TCTTGCCTTCTCAGGCTTCA+GGG | 0.415137 | 4.1:+77901459 | None:intergenic |
| CTTAAAGAACTAAACCTTCA+AGG | 0.416020 | 4.1:-77904160 | MS.gene73217:CDS |
| TGCAAAGTCTGTGCGTGTGC+TGG | 0.419836 | 4.1:-77901266 | MS.gene73217:CDS |
| TCAACAAGAATCCCTGTTCT+TGG | 0.420756 | 4.1:-77900037 | MS.gene73217:CDS |
| CACTTGGAGGACCACTATAA+AGG | 0.426951 | 4.1:+77902774 | None:intergenic |
| ACCCATCATTCACTAGTAGT+TGG | 0.428480 | 4.1:+77903422 | None:intergenic |
| TTCTGATCTTCAAAAGCCAC+AGG | 0.431768 | 4.1:-77903625 | MS.gene73217:CDS |
| TAAGCTTGTTTCTGAAATCA+AGG | 0.432851 | 4.1:-77900062 | MS.gene73217:CDS |
| ATGTTTATTTATGTGGTCAA+TGG | 0.434480 | 4.1:+77899215 | None:intergenic |
| ATATAACTTCATAGCCTTGA+AGG | 0.434655 | 4.1:+77904146 | None:intergenic |
| CAGTTTCAGTAATCAAGTTA+AGG | 0.435092 | 4.1:+77909808 | None:intergenic |
| ACCATTGCATTGCAGGCTGC+AGG | 0.440626 | 4.1:+77899841 | None:intergenic |
| AGATTAGCACTGGGCAGACT+TGG | 0.441937 | 4.1:-77904520 | MS.gene73217:CDS |
| TGGGACAATGACAGTTTGGC+TGG | 0.444164 | 4.1:-77902854 | MS.gene73217:CDS |
| TAACAGTTCTAGGAGACTTC+AGG | 0.450492 | 4.1:-77901972 | MS.gene73217:intron |
| TTGTTGACAAAGGCTCTTGA+AGG | 0.450746 | 4.1:+77909765 | None:intergenic |
| GCCATTGACTGTATCTGGTA+TGG | 0.455223 | 4.1:+77900255 | None:intergenic |
| AAGCCCTAGAATACCTCATA+TGG | 0.455473 | 4.1:+77903286 | None:intergenic |
| AGAAAGGAGGAAAATATTGC+TGG | 0.458916 | 4.1:-77901593 | MS.gene73217:CDS |
| TAATAAAATGCAGGATATTG+AGG | 0.461620 | 4.1:-77897489 | MS.gene73217:intron |
| TAACTTGATTACTGAAACTG+AGG | 0.463346 | 4.1:-77909805 | MS.gene73217:CDS |
| CCCATCATTCACTAGTAGTT+GGG | 0.463791 | 4.1:+77903423 | None:intergenic |
| AACAATCCCTCGACTCCTAC+AGG | 0.466514 | 4.1:+77897841 | None:intergenic |
| TTACCAGCATGACCAAGAAC+AGG | 0.466579 | 4.1:+77900025 | None:intergenic |
| TCCCAACTACTAGTGAATGA+TGG | 0.470310 | 4.1:-77903424 | MS.gene73217:CDS |
| AACATTATACGAGTGCTTCA+AGG | 0.470573 | 4.1:-77902085 | MS.gene73217:CDS |
| GGAAGAGAGTGCGCATGAAA+TGG | 0.473708 | 4.1:-77902008 | MS.gene73217:CDS |
| TACTAGGAAGGCACCATATG+AGG | 0.477182 | 4.1:-77903299 | MS.gene73217:intron |
| ATCCCTGTTCTTGGTCATGC+TGG | 0.477939 | 4.1:-77900028 | MS.gene73217:intron |
| AATACCTGAACAAGAGCATC+AGG | 0.478922 | 4.1:+77900672 | None:intergenic |
| AATAAAATGCAGGATATTGA+GGG | 0.480656 | 4.1:-77897488 | MS.gene73217:intron |
| TTTGGAGACAAATCAAGATT+GGG | 0.481455 | 4.1:-77902692 | MS.gene73217:CDS |
| TTCGAGTTTGGGTCACTTGG+AGG | 0.481716 | 4.1:+77902761 | None:intergenic |
| GTACCCCTTACTAATGGTAA+TGG | 0.482989 | 4.1:-77909843 | MS.gene73217:CDS |
| GACAAATCAAGATTGGGCAG+AGG | 0.488517 | 4.1:-77902686 | MS.gene73217:CDS |
| CATTCTTATCTCAAGTTGAC+AGG | 0.490759 | 4.1:-77899040 | MS.gene73217:intron |
| ATGGAGCACGCTTTGGACTA+GGG | 0.494430 | 4.1:-77897996 | MS.gene73217:CDS |
| CAAGCTTATTACTGCCTCTA+GGG | 0.494703 | 4.1:+77900077 | None:intergenic |
| AAGGGGTACCTCAATAGGTT+TGG | 0.495921 | 4.1:+77909857 | None:intergenic |
| ACCGCAAATTGGCAAATAGC+AGG | 0.496549 | 4.1:-77904078 | MS.gene73217:intron |
| AATTTCGAGTTTGGGTCACT+TGG | 0.499018 | 4.1:+77902758 | None:intergenic |
| ATTGAGGTACCCCTTACTAA+TGG | 0.501029 | 4.1:-77909849 | MS.gene73217:CDS |
| ACATTATACGAGTGCTTCAA+GGG | 0.504792 | 4.1:-77902084 | MS.gene73217:CDS |
| CACCATCACCAAACCTATTG+AGG | 0.509868 | 4.1:-77909865 | MS.gene73217:CDS |
| CTCAATAGGTTTGGTGATGG+TGG | 0.515987 | 4.1:+77909866 | None:intergenic |
| TTCAAGAGCCTTTGTCAACA+AGG | 0.516226 | 4.1:-77909763 | MS.gene73217:CDS |
| TTGGCAATTCGAAGTGGGAA+TGG | 0.517957 | 4.1:-77900450 | MS.gene73217:CDS |
| AAAATGATGCTGTTAGTACT+AGG | 0.518973 | 4.1:-77903315 | MS.gene73217:CDS |
| AAGTGATGGAAGATTAGCAC+TGG | 0.519612 | 4.1:-77904530 | MS.gene73217:CDS |
| TTGGTGACTTCAGGTGCTGT+TGG | 0.521178 | 4.1:-77904124 | MS.gene73217:CDS |
| AGGGATTGTTGACAAACAAA+TGG | 0.525711 | 4.1:-77897828 | MS.gene73217:intron |
| AAGGTCAGCTTTAAGTTCAA+GGG | 0.526790 | 4.1:+77902823 | None:intergenic |
| GAAAAGCATGTGCAGCTGTT+GGG | 0.530069 | 4.1:-77903590 | MS.gene73217:CDS |
| ACAAATCAAGATTGGGCAGA+GGG | 0.530530 | 4.1:-77902685 | MS.gene73217:CDS |
| TACCTCGTTATTAGAATCGA+AGG | 0.531369 | 4.1:-77903356 | MS.gene73217:CDS |
| CTTATTACTTAAAGGAGGAA+AGG | 0.531505 | 4.1:-77900427 | MS.gene73217:CDS |
| TAATTAATAGATAGCAGCAT+TGG | 0.535006 | 4.1:-77900469 | MS.gene73217:intron |
| CCCAACTACTAGTGAATGAT+GGG | 0.535082 | 4.1:-77903423 | MS.gene73217:CDS |
| GATGGCAAAGCAGATAGTTA+GGG | 0.536329 | 4.1:-77899881 | MS.gene73217:CDS |
| GTATGATACTATGTTTAGCC+AGG | 0.537851 | 4.1:-77903547 | MS.gene73217:intron |
| GCTGGCAGTGGCTGATGCAT+TGG | 0.538131 | 4.1:-77901575 | MS.gene73217:CDS |
| GCAGATATGGAAGAACCAAT+TGG | 0.540903 | 4.1:-77901244 | MS.gene73217:CDS |
| ACAAGCTTATTACTGCCTCT+AGG | 0.542070 | 4.1:+77900076 | None:intergenic |
| GGCTGATGTTGCTGATGCTG+TGG | 0.549604 | 4.1:-77901518 | MS.gene73217:CDS |
| ACTTGGAGCTCTATGTGAGC+AGG | 0.551750 | 4.1:-77904503 | MS.gene73217:intron |
| TGAAATTCCAGATCTACTAA+AGG | 0.553352 | 4.1:-77900203 | MS.gene73217:intron |
| AGGCCCTAAAATCTGAAGAA+AGG | 0.554155 | 4.1:-77901609 | MS.gene73217:CDS |
| TACCTCAATAGGTTTGGTGA+TGG | 0.556432 | 4.1:+77909863 | None:intergenic |
| GCTGTTGTCACTCGAAGTGA+TGG | 0.559453 | 4.1:-77904544 | MS.gene73217:CDS |
| TATTCCATTACCATTAGTAA+GGG | 0.560138 | 4.1:+77909839 | None:intergenic |
| CGCTTCAGAAATATTTAGCA+CGG | 0.560251 | 4.1:+77899305 | None:intergenic |
| CGAGGTCCTGTAGGAGTCGA+GGG | 0.562132 | 4.1:-77897847 | MS.gene73217:CDS |
| ATAAAATGCAGGATATTGAG+GGG | 0.562208 | 4.1:-77897487 | MS.gene73217:intron |
| ATCCTTGAACTCCAACGTGA+AGG | 0.565086 | 4.1:-77899622 | MS.gene73217:intron |
| GCCATACCAGATACAGTCAA+TGG | 0.569581 | 4.1:-77900256 | MS.gene73217:CDS |
| TCCTGCAGCCTGCAATGCAA+TGG | 0.571728 | 4.1:-77899842 | MS.gene73217:intron |
| GCATCCCTGTTGTTATAACT+AGG | 0.572085 | 4.1:-77902616 | MS.gene73217:intron |
| GGAAAAGCATGTGCAGCTGT+TGG | 0.572419 | 4.1:-77903591 | MS.gene73217:CDS |
| TGTTGGGCAGAGTAGTCTCA+TGG | 0.572853 | 4.1:-77903574 | MS.gene73217:CDS |
| CAAGTCTGCTAATATTGAGA+TGG | 0.580213 | 4.1:-77899899 | MS.gene73217:CDS |
| AACTGAGGATTTGAGCAACA+TGG | 0.583563 | 4.1:-77909790 | MS.gene73217:CDS |
| CACAAGGATCTGTCATGTAA+TGG | 0.583937 | 4.1:-77899661 | MS.gene73217:CDS |
| GGGAGTGGACAGGTAGTCGA+TGG | 0.585290 | 4.1:-77897466 | MS.gene73217:CDS |
| ATCAAATGCGGTCTTACACA+AGG | 0.591057 | 4.1:-77900394 | MS.gene73217:intron |
| AATGGCTTATTACTTAAAGG+AGG | 0.594695 | 4.1:-77900432 | MS.gene73217:CDS |
| TGATGCTGTTAGTACTAGGA+AGG | 0.595492 | 4.1:-77903311 | MS.gene73217:CDS |
| ACGCTTTGGACTAGGGGCAG+AGG | 0.595772 | 4.1:-77897989 | MS.gene73217:intron |
| TAATAACGAGGTAATTGTGT+CGG | 0.596135 | 4.1:+77903366 | None:intergenic |
| TTGCACAATTGAAATTGTAG+AGG | 0.596507 | 4.1:-77899250 | MS.gene73217:CDS |
| ACCACATAAATAAACATGGA+AGG | 0.597773 | 4.1:-77899209 | MS.gene73217:intron |
| ATTCATGCTCGAGGTCCTGT+AGG | 0.597900 | 4.1:-77897856 | MS.gene73217:CDS |
| AAATCAAGATTGGGCAGAGG+GGG | 0.599491 | 4.1:-77902683 | MS.gene73217:CDS |
| ACGCTTAACCTTGTTGACAA+AGG | 0.602740 | 4.1:+77909755 | None:intergenic |
| TCGAGGTCCTGTAGGAGTCG+AGG | 0.610355 | 4.1:-77897848 | MS.gene73217:CDS |
| GAGGAAAATATTGCTGGCAG+TGG | 0.612236 | 4.1:-77901587 | MS.gene73217:CDS |
| TTTAACCCTGAAGCCTGAGA+AGG | 0.613809 | 4.1:-77901464 | MS.gene73217:intron |
| TGTCACAGAAGACTCTGAAG+TGG | 0.614012 | 4.1:-77899069 | MS.gene73217:CDS |
| CAGCATTGGCAATTCGAAGT+GGG | 0.617966 | 4.1:-77900455 | MS.gene73217:CDS |
| CACTCGTATAATGTTGTCTG+TGG | 0.619043 | 4.1:+77902093 | None:intergenic |
| CCCTAAAATCTGAAGAAAGG+AGG | 0.621678 | 4.1:-77901606 | MS.gene73217:CDS |
| TGGAGCACGCTTTGGACTAG+GGG | 0.622951 | 4.1:-77897995 | MS.gene73217:CDS |
| AAAACCGTGTACTTGCATTG+TGG | 0.623084 | 4.1:+77898022 | None:intergenic |
| CAGGTAGTCGATGGTGATCG+AGG | 0.623515 | 4.1:-77897457 | MS.gene73217:CDS |
| TGATGATGTGATAGATCTTG+TGG | 0.625953 | 4.1:-77900101 | MS.gene73217:CDS |
| ATTCCATTACCATTAGTAAG+GGG | 0.626101 | 4.1:+77909840 | None:intergenic |
| TCTGATCTTCAAAAGCCACA+GGG | 0.634521 | 4.1:-77903624 | MS.gene73217:CDS |
| GATGTCGAGGGCCTTTATAG+TGG | 0.639923 | 4.1:-77902785 | MS.gene73217:CDS |
| ATAGATCTTGTGGTCCCTAG+AGG | 0.639977 | 4.1:-77900091 | MS.gene73217:CDS |
| GCAGGTGTTCAAATATATGG+TGG | 0.640152 | 4.1:-77899342 | MS.gene73217:intron |
| TACCAGCATGACCAAGAACA+GGG | 0.642362 | 4.1:+77900026 | None:intergenic |
| TATTCCACAATGCAAGTACA+CGG | 0.643532 | 4.1:-77898026 | MS.gene73217:CDS |
| GCAGCATTGGCAATTCGAAG+TGG | 0.644064 | 4.1:-77900456 | MS.gene73217:CDS |
| ATCATTCACTAGTAGTTGGG+AGG | 0.644588 | 4.1:+77903426 | None:intergenic |
| GGAGACTCTTCTTGTACACA+AGG | 0.647110 | 4.1:-77899677 | MS.gene73217:CDS |
| AGAACTGTTACGTGCTGCGA+CGG | 0.647572 | 4.1:+77901985 | None:intergenic |
| TTTCCATCAAGGTCACCCTG+TGG | 0.647951 | 4.1:+77903609 | None:intergenic |
| ATTGACCACATAAATAAACA+TGG | 0.655940 | 4.1:-77899213 | MS.gene73217:CDS |
| ATTATCAGGAGGACACCCAA+AGG | 0.659382 | 4.1:+77900708 | None:intergenic |
| AAGGATCTGTCATGTAATGG+TGG | 0.660536 | 4.1:-77899658 | MS.gene73217:CDS |
| TAAAATGCAGGATATTGAGG+GGG | 0.661826 | 4.1:-77897486 | MS.gene73217:intron |
| ACAAGTCGAATTCATGCTCG+AGG | 0.666973 | 4.1:-77897865 | MS.gene73217:CDS |
| CAAATCAAGATTGGGCAGAG+GGG | 0.679854 | 4.1:-77902684 | MS.gene73217:CDS |
| GAGACTCAAATATTATCAGG+AGG | 0.682200 | 4.1:+77900697 | None:intergenic |
| AGTGATGGAAGATTAGCACT+GGG | 0.686494 | 4.1:-77904529 | MS.gene73217:CDS |
| CATTATACGAGTGCTTCAAG+GGG | 0.688933 | 4.1:-77902083 | MS.gene73217:CDS |
| GACCTTCGATTCTAATAACG+AGG | 0.691237 | 4.1:+77903354 | None:intergenic |
| GGAAGCCCGAAGATCAAATG+CGG | 0.703388 | 4.1:-77900406 | MS.gene73217:CDS |
| GTAAGGCCAAACCTTCACGT+TGG | 0.709134 | 4.1:+77899611 | None:intergenic |
| AATACCTAGTTATAACAACA+GGG | 0.736133 | 4.1:+77902612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 77897417 | 77909922 | 77897417 | ID=MS.gene73217 |
| chr4.1 | mRNA | 77897417 | 77909922 | 77897417 | ID=MS.gene73217.t1;Parent=MS.gene73217 |
| chr4.1 | exon | 77909743 | 77909922 | 77909743 | ID=MS.gene73217.t1.exon1;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77909743 | 77909922 | 77909743 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77904504 | 77904575 | 77904504 | ID=MS.gene73217.t1.exon2;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77904504 | 77904575 | 77904504 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77904079 | 77904182 | 77904079 | ID=MS.gene73217.t1.exon3;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77904079 | 77904182 | 77904079 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77903548 | 77903650 | 77903548 | ID=MS.gene73217.t1.exon4;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77903548 | 77903650 | 77903548 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77903300 | 77903461 | 77903300 | ID=MS.gene73217.t1.exon5;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77903300 | 77903461 | 77903300 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77902617 | 77902894 | 77902617 | ID=MS.gene73217.t1.exon6;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77902617 | 77902894 | 77902617 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77901973 | 77902123 | 77901973 | ID=MS.gene73217.t1.exon7;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77901973 | 77902123 | 77901973 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77901465 | 77901629 | 77901465 | ID=MS.gene73217.t1.exon8;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77901465 | 77901629 | 77901465 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77901222 | 77901299 | 77901222 | ID=MS.gene73217.t1.exon9;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77901222 | 77901299 | 77901222 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77900677 | 77900766 | 77900677 | ID=MS.gene73217.t1.exon10;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77900677 | 77900766 | 77900677 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77900395 | 77900481 | 77900395 | ID=MS.gene73217.t1.exon11;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77900395 | 77900481 | 77900395 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77900204 | 77900290 | 77900204 | ID=MS.gene73217.t1.exon12;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77900204 | 77900290 | 77900204 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77900029 | 77900125 | 77900029 | ID=MS.gene73217.t1.exon13;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77900029 | 77900125 | 77900029 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77899843 | 77899946 | 77899843 | ID=MS.gene73217.t1.exon14;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77899843 | 77899946 | 77899843 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77899623 | 77899698 | 77899623 | ID=MS.gene73217.t1.exon15;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77899623 | 77899698 | 77899623 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77899210 | 77899360 | 77899210 | ID=MS.gene73217.t1.exon16;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77899210 | 77899360 | 77899210 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77899041 | 77899109 | 77899041 | ID=MS.gene73217.t1.exon17;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77899041 | 77899109 | 77899041 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77897990 | 77898056 | 77897990 | ID=MS.gene73217.t1.exon18;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77897990 | 77898056 | 77897990 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77897829 | 77897899 | 77897829 | ID=MS.gene73217.t1.exon19;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77897829 | 77897899 | 77897829 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| chr4.1 | exon | 77897417 | 77897498 | 77897417 | ID=MS.gene73217.t1.exon20;Parent=MS.gene73217.t1 |
| chr4.1 | CDS | 77897417 | 77897498 | 77897417 | ID=cds.MS.gene73217.t1;Parent=MS.gene73217.t1 |
| Gene Sequence |
| Protein sequence |
