Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73422.t1 | XP_013470146.1 | 93.3 | 165 | 6 | 1 | 26 | 190 | 19 | 178 | 5.00E-82 | 313.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73422.t1 | Q8RYC6 | 50.0 | 166 | 74 | 2 | 26 | 182 | 20 | 185 | 2.6e-39 | 163.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73422.t1 | A0A072VQ82 | 93.3 | 165 | 6 | 1 | 26 | 190 | 19 | 178 | 3.6e-82 | 313.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene73422.t1 | TR | AUX/IAA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050584 | MS.gene73422 | 0.818372 | 2.03E-52 | -1.69E-46 |
| MS.gene051789 | MS.gene73422 | 0.844303 | 8.22E-59 | -1.69E-46 |
| MS.gene053074 | MS.gene73422 | 0.8064 | 8.38E-50 | -1.69E-46 |
| MS.gene05456 | MS.gene73422 | 0.806122 | 9.59E-50 | -1.69E-46 |
| MS.gene055207 | MS.gene73422 | 0.817288 | 3.56E-52 | -1.69E-46 |
| MS.gene059006 | MS.gene73422 | 0.84029 | 9.50E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73422.t1 | MTR_1g109510 | 93.333 | 165 | 6 | 1 | 26 | 190 | 19 | 178 | 7.81e-111 | 314 |
| MS.gene73422.t1 | MTR_1g069495 | 40.385 | 104 | 43 | 2 | 96 | 180 | 146 | 249 | 9.65e-17 | 76.3 |
| MS.gene73422.t1 | MTR_5g067350 | 32.653 | 147 | 77 | 4 | 51 | 180 | 187 | 328 | 5.76e-16 | 75.1 |
| MS.gene73422.t1 | MTR_1g085750 | 42.697 | 89 | 49 | 1 | 97 | 183 | 85 | 173 | 3.28e-15 | 70.5 |
| MS.gene73422.t1 | MTR_1g040675 | 36.879 | 141 | 65 | 5 | 46 | 180 | 53 | 175 | 8.85e-15 | 69.3 |
| MS.gene73422.t1 | MTR_4g124300 | 31.544 | 149 | 83 | 4 | 36 | 183 | 53 | 183 | 1.94e-14 | 68.6 |
| MS.gene73422.t1 | MTR_3g106850 | 27.737 | 137 | 93 | 2 | 46 | 180 | 74 | 206 | 2.51e-14 | 68.9 |
| MS.gene73422.t1 | MTR_6g488150 | 33.784 | 148 | 72 | 5 | 53 | 180 | 94 | 235 | 5.33e-14 | 68.6 |
| MS.gene73422.t1 | MTR_7g110790 | 43.023 | 86 | 47 | 1 | 97 | 180 | 70 | 155 | 5.88e-14 | 66.6 |
| MS.gene73422.t1 | MTR_5g030710 | 29.412 | 136 | 79 | 3 | 61 | 180 | 182 | 316 | 6.25e-14 | 68.9 |
| MS.gene73422.t1 | MTR_1g076270 | 36.290 | 124 | 59 | 4 | 61 | 180 | 64 | 171 | 5.82e-13 | 64.3 |
| MS.gene73422.t1 | MTR_1g093350 | 36.290 | 124 | 59 | 4 | 61 | 180 | 64 | 171 | 5.82e-13 | 64.3 |
| MS.gene73422.t1 | MTR_8g067530 | 31.081 | 148 | 76 | 5 | 53 | 180 | 196 | 337 | 1.11e-12 | 65.5 |
| MS.gene73422.t1 | MTR_2g101500 | 30.612 | 147 | 83 | 4 | 51 | 180 | 163 | 307 | 1.25e-12 | 65.5 |
| MS.gene73422.t1 | MTR_8g014520 | 37.624 | 101 | 46 | 2 | 97 | 180 | 157 | 257 | 1.32e-12 | 64.7 |
| MS.gene73422.t1 | MTR_8g014520 | 37.624 | 101 | 46 | 2 | 97 | 180 | 157 | 257 | 1.35e-12 | 64.7 |
| MS.gene73422.t1 | MTR_4g115075 | 34.524 | 84 | 48 | 1 | 97 | 180 | 129 | 205 | 6.45e-12 | 62.0 |
| MS.gene73422.t1 | MTR_8g103030 | 27.879 | 165 | 88 | 4 | 44 | 180 | 113 | 274 | 8.42e-12 | 62.8 |
| MS.gene73422.t1 | MTR_1g080860 | 32.374 | 139 | 73 | 4 | 61 | 180 | 98 | 234 | 1.02e-11 | 62.0 |
| MS.gene73422.t1 | MTR_1g080860 | 32.374 | 139 | 73 | 4 | 61 | 180 | 98 | 234 | 1.45e-11 | 61.6 |
| MS.gene73422.t1 | MTR_2g100780 | 34.951 | 103 | 48 | 2 | 97 | 180 | 149 | 251 | 5.08e-11 | 60.5 |
| MS.gene73422.t1 | MTR_2g100780 | 34.951 | 103 | 48 | 2 | 97 | 180 | 149 | 251 | 6.39e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73422.t1 | AT2G01200 | 50.000 | 166 | 74 | 2 | 26 | 182 | 20 | 185 | 1.04e-52 | 167 |
| MS.gene73422.t1 | AT2G01200 | 50.000 | 166 | 74 | 2 | 26 | 182 | 20 | 185 | 1.04e-52 | 167 |
| MS.gene73422.t1 | AT1G15050 | 45.856 | 181 | 64 | 3 | 2 | 182 | 1 | 147 | 2.17e-47 | 152 |
| MS.gene73422.t1 | AT1G15050 | 45.856 | 181 | 64 | 3 | 2 | 182 | 33 | 179 | 4.23e-47 | 152 |
| MS.gene73422.t1 | AT2G33310 | 44.681 | 94 | 42 | 1 | 97 | 180 | 131 | 224 | 1.14e-20 | 86.3 |
| MS.gene73422.t1 | AT2G33310 | 44.681 | 94 | 42 | 1 | 97 | 180 | 130 | 223 | 1.16e-20 | 86.3 |
| MS.gene73422.t1 | AT2G33310 | 44.681 | 94 | 42 | 1 | 97 | 180 | 130 | 223 | 1.16e-20 | 86.3 |
| MS.gene73422.t1 | AT1G04550 | 45.556 | 90 | 42 | 1 | 96 | 178 | 125 | 214 | 3.43e-19 | 82.4 |
| MS.gene73422.t1 | AT4G28640 | 40.206 | 97 | 45 | 3 | 97 | 180 | 138 | 234 | 4.32e-14 | 68.6 |
| MS.gene73422.t1 | AT4G28640 | 40.206 | 97 | 45 | 3 | 97 | 180 | 138 | 234 | 4.67e-14 | 68.6 |
| MS.gene73422.t1 | AT1G52830 | 37.634 | 93 | 57 | 1 | 90 | 182 | 88 | 179 | 1.55e-13 | 66.2 |
| MS.gene73422.t1 | AT3G62100 | 43.529 | 85 | 47 | 1 | 97 | 180 | 84 | 168 | 1.60e-13 | 65.9 |
| MS.gene73422.t1 | AT4G28640 | 40.206 | 97 | 45 | 3 | 97 | 180 | 138 | 234 | 1.86e-13 | 67.4 |
| MS.gene73422.t1 | AT2G46990 | 41.111 | 90 | 52 | 1 | 97 | 185 | 86 | 175 | 2.48e-13 | 65.5 |
| MS.gene73422.t1 | AT3G17600 | 40.000 | 85 | 48 | 1 | 97 | 181 | 74 | 155 | 2.77e-13 | 64.7 |
| MS.gene73422.t1 | AT3G15540 | 39.773 | 88 | 51 | 2 | 96 | 182 | 97 | 183 | 1.35e-12 | 63.9 |
| MS.gene73422.t1 | AT3G16500 | 31.148 | 122 | 70 | 3 | 72 | 180 | 129 | 249 | 3.92e-12 | 63.5 |
| MS.gene73422.t1 | AT3G16500 | 31.148 | 122 | 70 | 3 | 72 | 180 | 129 | 249 | 3.94e-12 | 63.5 |
| MS.gene73422.t1 | AT5G25890 | 33.708 | 89 | 54 | 1 | 97 | 185 | 82 | 165 | 8.70e-12 | 61.2 |
| MS.gene73422.t1 | AT1G51950 | 34.343 | 99 | 48 | 2 | 97 | 180 | 151 | 247 | 8.87e-12 | 62.4 |
| MS.gene73422.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 44 | 180 | 144 | 300 | 9.06e-12 | 62.8 |
| MS.gene73422.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 44 | 180 | 144 | 300 | 9.06e-12 | 62.8 |
| MS.gene73422.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 44 | 180 | 161 | 317 | 9.67e-12 | 62.8 |
| MS.gene73422.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 44 | 180 | 144 | 300 | 1.04e-11 | 62.8 |
| MS.gene73422.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 44 | 180 | 144 | 300 | 1.04e-11 | 62.8 |
| MS.gene73422.t1 | AT1G04240 | 32.258 | 124 | 70 | 3 | 61 | 180 | 65 | 178 | 2.44e-11 | 60.5 |
| MS.gene73422.t1 | AT1G04240 | 32.258 | 124 | 70 | 3 | 61 | 180 | 165 | 278 | 5.98e-11 | 60.5 |
| MS.gene73422.t1 | AT5G65670 | 27.941 | 136 | 80 | 4 | 61 | 180 | 184 | 317 | 7.11e-11 | 60.5 |
| MS.gene73422.t1 | AT5G65670 | 27.941 | 136 | 80 | 4 | 61 | 180 | 184 | 317 | 7.42e-11 | 60.5 |
| MS.gene73422.t1 | AT3G04730 | 36.364 | 99 | 49 | 2 | 96 | 180 | 119 | 217 | 9.00e-11 | 59.3 |
| MS.gene73422.t1 | AT1G04100 | 33.929 | 112 | 58 | 2 | 89 | 184 | 145 | 256 | 9.81e-11 | 59.7 |
Find 46 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTGAATTCTTCATATT+AGG | 0.248292 | 1.4:-83864348 | None:intergenic |
| TAACTCAAACAGATATTCTA+AGG | 0.316363 | 1.4:+83862426 | MS.gene73422:CDS |
| GGTATAAGATTATTTCAATC+TGG | 0.393434 | 1.4:+83864819 | MS.gene73422:CDS |
| AAAATTTGTATTCTTGATCA+TGG | 0.399284 | 1.4:+83864483 | MS.gene73422:CDS |
| ATTGATCTTGGTCTTAGTCT+TGG | 0.403384 | 1.4:+83863839 | MS.gene73422:CDS |
| TCAGGTAGCCAATCAGTATC+TGG | 0.404191 | 1.4:+83864798 | MS.gene73422:intron |
| AGTGTATGATGATGACCTTA+TGG | 0.418403 | 1.4:+83864320 | MS.gene73422:intron |
| ATTCAATTAGAAGACATGTT+TGG | 0.424570 | 1.4:+83864525 | MS.gene73422:CDS |
| CGACCAGATCGGTGTTCCCT+TGG | 0.429552 | 1.4:+83862375 | MS.gene73422:CDS |
| AAACTTTGATGAAGAGATAG+AGG | 0.443595 | 1.4:+83864395 | MS.gene73422:CDS |
| ACAAGGATAGTGAAGACAAT+TGG | 0.458182 | 1.4:+83864862 | MS.gene73422:CDS |
| ATCTTATACCAGATACTGAT+TGG | 0.459323 | 1.4:-83864806 | None:intergenic |
| TCATATTAGGCCAATCCATA+AGG | 0.461452 | 1.4:-83864335 | None:intergenic |
| AAACATGTCTTCTAATTGAA+TGG | 0.463927 | 1.4:-83864523 | None:intergenic |
| ATCGGTGTTCCCTTGGGAAG+TGG | 0.488280 | 1.4:+83862382 | MS.gene73422:CDS |
| GATGATGGCATAATTGATCT+TGG | 0.492063 | 1.4:+83863827 | MS.gene73422:CDS |
| GACCAGATCGGTGTTCCCTT+GGG | 0.494044 | 1.4:+83862376 | MS.gene73422:CDS |
| AAGCCCATCTCTCATTGCTC+TGG | 0.494319 | 1.4:-83864422 | None:intergenic |
| ATGTGAAGGTTAACATGGAT+GGG | 0.495408 | 1.4:+83864445 | MS.gene73422:CDS |
| TATGTGAAGGTTAACATGGA+TGG | 0.499449 | 1.4:+83864444 | MS.gene73422:CDS |
| TTCCCAAGGGAACACCGATC+TGG | 0.500127 | 1.4:-83862378 | None:intergenic |
| TAGAATGTGTGAAAAGGCTA+AGG | 0.521536 | 1.4:+83865021 | MS.gene73422:CDS |
| GACATGACTGCCACTTCCCA+AGG | 0.530363 | 1.4:-83862392 | None:intergenic |
| GGTCCAGAGCAATGAGAGAT+GGG | 0.537453 | 1.4:+83864419 | MS.gene73422:CDS |
| GGGTCCAGAGCAATGAGAGA+TGG | 0.546013 | 1.4:+83864418 | MS.gene73422:CDS |
| AACATGGATGGGGTCTCCAT+TGG | 0.556874 | 1.4:+83864456 | MS.gene73422:CDS |
| TATCAGGACAAACATGATGA+TGG | 0.557533 | 1.4:+83863812 | MS.gene73422:intron |
| AGTTTGTAGAATGTGTGAAA+AGG | 0.572178 | 1.4:+83865015 | MS.gene73422:CDS |
| AACTTTGATGAAGAGATAGA+GGG | 0.577407 | 1.4:+83864396 | MS.gene73422:CDS |
| GGATGAACACATACTTCCAC+AGG | 0.585852 | 1.4:-83864902 | None:intergenic |
| AGGATAGTGAAGACAATTGG+AGG | 0.586064 | 1.4:+83864865 | MS.gene73422:CDS |
| GGACTGTTGGTGATGTCCTG+TGG | 0.599377 | 1.4:+83864886 | MS.gene73422:CDS |
| TGGATGGGGTCTCCATTGGT+AGG | 0.603415 | 1.4:+83864460 | MS.gene73422:CDS |
| GGCTTATGTGAAGGTTAACA+TGG | 0.603593 | 1.4:+83864440 | MS.gene73422:CDS |
| AGGATTGCAAGAAAGAATGC+AGG | 0.603908 | 1.4:+83865041 | MS.gene73422:CDS |
| TGTGAAGGTTAACATGGATG+GGG | 0.610516 | 1.4:+83864446 | MS.gene73422:CDS |
| AGAGTACTCATTATTCTACA+AGG | 0.631045 | 1.4:+83864845 | MS.gene73422:CDS |
| ATGATGATGACCTTATGGAT+TGG | 0.632385 | 1.4:+83864325 | MS.gene73422:CDS |
| TGAGAGATGGGCTTATGTGA+AGG | 0.637438 | 1.4:+83864431 | MS.gene73422:CDS |
| GAAGACAATTGGAGGACTGT+TGG | 0.640837 | 1.4:+83864873 | MS.gene73422:CDS |
| ATTTGTATTCTTGATCATGG+AGG | 0.642489 | 1.4:+83864486 | MS.gene73422:CDS |
| CAAGGGAACACCGATCTGGT+CGG | 0.645159 | 1.4:-83862374 | None:intergenic |
| ACATGACTGCCACTTCCCAA+GGG | 0.659632 | 1.4:-83862391 | None:intergenic |
| ATGTTGGAATCCGACCAGAT+CGG | 0.662640 | 1.4:+83862364 | MS.gene73422:CDS |
| ACTTTGATGAAGAGATAGAG+GGG | 0.683990 | 1.4:+83864397 | MS.gene73422:CDS |
| CTTTGATGAAGAGATAGAGG+GGG | 0.700859 | 1.4:+83864398 | MS.gene73422:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACATTCATATAAAATT+GGG | + | chr1.4:83862609-83862628 | MS.gene73422:intron | 10.0% |
| !! | TAAATACATTCATATAAAAT+TGG | + | chr1.4:83862608-83862627 | MS.gene73422:intron | 10.0% |
| !!! | AGTAATTCAAAAATAATTTT+TGG | - | chr1.4:83862525-83862544 | None:intergenic | 10.0% |
| !!! | ATTTTATTATATATACTAGT+TGG | + | chr1.4:83864948-83864967 | MS.gene73422:intron | 10.0% |
| !!! | GTAATTCAAAAATAATTTTT+GGG | - | chr1.4:83862524-83862543 | None:intergenic | 10.0% |
| !! | ATGTTAGAATAAATTCTAAA+GGG | - | chr1.4:83863037-83863056 | None:intergenic | 15.0% |
| !!! | AATTTTTATCAAAATCTTGA+TGG | - | chr1.4:83862853-83862872 | None:intergenic | 15.0% |
| !!! | GTAAAACTTTTTAAAATGAT+GGG | - | chr1.4:83863980-83863999 | None:intergenic | 15.0% |
| !!! | TAAAACTTTTTAAAATGATG+GGG | - | chr1.4:83863979-83863998 | None:intergenic | 15.0% |
| !!! | TGTAAAACTTTTTAAAATGA+TGG | - | chr1.4:83863981-83864000 | None:intergenic | 15.0% |
| !! | AAAAATTGAAACAATGAACA+AGG | - | chr1.4:83863917-83863936 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATGAACAA+GGG | - | chr1.4:83863916-83863935 | None:intergenic | 20.0% |
| !! | AAAATTTGTATTCTTGATCA+TGG | + | chr1.4:83864483-83864502 | MS.gene73422:CDS | 20.0% |
| !! | ATGCATTCAATGATTAATAA+TGG | + | chr1.4:83863591-83863610 | MS.gene73422:intron | 20.0% |
| !! | CAGTGTATTTAATTCATTTA+TGG | - | chr1.4:83863265-83863284 | None:intergenic | 20.0% |
| !! | CATGTTAGAATAAATTCTAA+AGG | - | chr1.4:83863038-83863057 | None:intergenic | 20.0% |
| !! | TCAAAGCTAAAAATCAATTA+TGG | - | chr1.4:83863086-83863105 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTAAAATGATGG+GGG | - | chr1.4:83863978-83863997 | None:intergenic | 20.0% |
| !!! | AAATTTTTTGAGTATCTAAG+TGG | - | chr1.4:83863654-83863673 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTTAAATGAAAA+GGG | - | chr1.4:83864926-83864945 | None:intergenic | 20.0% |
| !!! | AGTTTGTATCAATCATTTTT+AGG | - | chr1.4:83864198-83864217 | None:intergenic | 20.0% |
| !!! | TAGAAAAGTGTTAAATGAAA+AGG | - | chr1.4:83864927-83864946 | None:intergenic | 20.0% |
| !!! | TTTATTGTTTTAGCATAGAA+AGG | + | chr1.4:83863006-83863025 | MS.gene73422:intron | 20.0% |
| !!! | TTTGTAATGTTTTGTTAACA+GGG | + | chr1.4:83864992-83865011 | MS.gene73422:intron | 20.0% |
| ! | AAAACACTGAATGAAAAATG+AGG | - | chr1.4:83864128-83864147 | None:intergenic | 25.0% |
| ! | AAACATGTCTTCTAATTGAA+TGG | - | chr1.4:83864526-83864545 | None:intergenic | 25.0% |
| ! | AAATTGAAACAATGAACAAG+GGG | - | chr1.4:83863915-83863934 | None:intergenic | 25.0% |
| ! | AAGCTAAAAATCAATTATGG+AGG | - | chr1.4:83863083-83863102 | None:intergenic | 25.0% |
| ! | ATTCAATTAGAAGACATGTT+TGG | + | chr1.4:83864525-83864544 | MS.gene73422:CDS | 25.0% |
| ! | ATTTATTCTAACATGAAGCT+AGG | + | chr1.4:83863043-83863062 | MS.gene73422:intron | 25.0% |
| ! | GGTATAAGATTATTTCAATC+TGG | + | chr1.4:83864819-83864838 | MS.gene73422:CDS | 25.0% |
| ! | TAACTCAAACAGATATTCTA+AGG | + | chr1.4:83862426-83862445 | MS.gene73422:CDS | 25.0% |
| ! | TAACTCACTCAAATAAGAAA+AGG | - | chr1.4:83863945-83863964 | None:intergenic | 25.0% |
| ! | TAGTGTAATGTAATGATGTT+TGG | + | chr1.4:83864293-83864312 | MS.gene73422:intron | 25.0% |
| ! | TCATTAATCTATGCATTCAA+AGG | + | chr1.4:83863215-83863234 | MS.gene73422:intron | 25.0% |
| !! | AATACAAATTTTCCTACCAA+TGG | - | chr1.4:83864475-83864494 | None:intergenic | 25.0% |
| !! | ATACAACTTATCAGTCATTT+TGG | - | chr1.4:83864767-83864786 | None:intergenic | 25.0% |
| !! | TCAATGATTAATAATGGAGT+AGG | + | chr1.4:83863597-83863616 | MS.gene73422:intron | 25.0% |
| !!! | AGCAAATGGAAAGTATTATA+TGG | - | chr1.4:83863395-83863414 | None:intergenic | 25.0% |
| !!! | GTTTGTAATGTTTTGTTAAC+AGG | + | chr1.4:83864991-83865010 | MS.gene73422:intron | 25.0% |
| AAAAATAACACATTGAGACG+CGG | - | chr1.4:83862703-83862722 | None:intergenic | 30.0% | |
| AAAATGAACCGATACATTCA+TGG | + | chr1.4:83864709-83864728 | MS.gene73422:intron | 30.0% | |
| AAACTTTGATGAAGAGATAG+AGG | + | chr1.4:83864395-83864414 | MS.gene73422:CDS | 30.0% | |
| AACTTTGATGAAGAGATAGA+GGG | + | chr1.4:83864396-83864415 | MS.gene73422:CDS | 30.0% | |
| AAGTAACTCAAGAAAGCAAA+TGG | - | chr1.4:83863409-83863428 | None:intergenic | 30.0% | |
| ACTTCTGTAAAGGATCAATT+TGG | + | chr1.4:83863497-83863516 | MS.gene73422:intron | 30.0% | |
| AGGACATTATATCATACCAA+TGG | + | chr1.4:83863736-83863755 | MS.gene73422:intron | 30.0% | |
| AGTTTGTAGAATGTGTGAAA+AGG | + | chr1.4:83865015-83865034 | MS.gene73422:CDS | 30.0% | |
| ATCCTTTACAGAAGTTATTC+TGG | - | chr1.4:83863492-83863511 | None:intergenic | 30.0% | |
| ATCTTATACCAGATACTGAT+TGG | - | chr1.4:83864809-83864828 | None:intergenic | 30.0% | |
| ATGAGAAATGTATAACCAGA+AGG | + | chr1.4:83863319-83863338 | MS.gene73422:intron | 30.0% | |
| ATTTCTCCATCTTATCAAAG+TGG | + | chr1.4:83864593-83864612 | MS.gene73422:intron | 30.0% | |
| ATTTGTATTCTTGATCATGG+AGG | + | chr1.4:83864486-83864505 | MS.gene73422:CDS | 30.0% | |
| CCAACATGTATTTCATTTAG+AGG | - | chr1.4:83863356-83863375 | None:intergenic | 30.0% | |
| CCTCTAAATGAAATACATGT+TGG | + | chr1.4:83863353-83863372 | MS.gene73422:intron | 30.0% | |
| CTAAACTAAATACAGCAGTA+AGG | + | chr1.4:83864219-83864238 | MS.gene73422:intron | 30.0% | |
| GGAGGAAAAATTTATTCTAG+AGG | + | chr1.4:83862961-83862980 | MS.gene73422:intron | 30.0% | |
| GTGCTTGAATTCTTCATATT+AGG | - | chr1.4:83864351-83864370 | None:intergenic | 30.0% | |
| GTTGTATAATTACCCTATTC+AGG | + | chr1.4:83864780-83864799 | MS.gene73422:intron | 30.0% | |
| GTTTAGATTAGCGTTTAGTT+AGG | + | chr1.4:83862814-83862833 | MS.gene73422:intron | 30.0% | |
| TGAAAAAGTTTAGTGGTCAA+TGG | - | chr1.4:83863715-83863734 | None:intergenic | 30.0% | |
| TGAACATTTGTAGCAATGTT+AGG | + | chr1.4:83863457-83863476 | MS.gene73422:intron | 30.0% | |
| TGAGAAATGTATAACCAGAA+GGG | + | chr1.4:83863320-83863339 | MS.gene73422:intron | 30.0% | |
| TGTCCTATGAAAAAGTTTAG+TGG | - | chr1.4:83863722-83863741 | None:intergenic | 30.0% | |
| ! | AAATTTTTCCTCCACCAAAA+GGG | - | chr1.4:83862954-83862973 | None:intergenic | 30.0% |
| ! | AGAGTACTCATTATTCTACA+AGG | + | chr1.4:83864845-83864864 | MS.gene73422:CDS | 30.0% |
| ! | TAAATTTTTCCTCCACCAAA+AGG | - | chr1.4:83862955-83862974 | None:intergenic | 30.0% |
| ! | TCTCTTCATCAAAGTTTTCA+TGG | - | chr1.4:83864392-83864411 | None:intergenic | 30.0% |
| ! | TTTTCACTCAGTTTTCTATC+AGG | + | chr1.4:83863796-83863815 | MS.gene73422:intron | 30.0% |
| !!! | TGACCACTAAACTTTTTCAT+AGG | + | chr1.4:83863716-83863735 | MS.gene73422:intron | 30.0% |
| AACAAAACACCACAAGAACA+AGG | - | chr1.4:83863528-83863547 | None:intergenic | 35.0% | |
| AACTGTCCACTTTGATAAGA+TGG | - | chr1.4:83864602-83864621 | None:intergenic | 35.0% | |
| ACAAAACACCACAAGAACAA+GGG | - | chr1.4:83863527-83863546 | None:intergenic | 35.0% | |
| ACAAGGATAGTGAAGACAAT+TGG | + | chr1.4:83864862-83864881 | MS.gene73422:CDS | 35.0% | |
| ACAAGTGCATTATTGACACA+AGG | - | chr1.4:83864561-83864580 | None:intergenic | 35.0% | |
| ACATATACTTCTGCGATGTT+TGG | - | chr1.4:83862796-83862815 | None:intergenic | 35.0% | |
| ACTTTGATGAAGAGATAGAG+GGG | + | chr1.4:83864397-83864416 | MS.gene73422:CDS | 35.0% | |
| ATCTTCTGTTACTGTCAACA+TGG | - | chr1.4:83863564-83863583 | None:intergenic | 35.0% | |
| ATGTAGATGTACGAATTGCA+AGG | + | chr1.4:83862757-83862776 | MS.gene73422:intron | 35.0% | |
| ATGTGAAGGTTAACATGGAT+GGG | + | chr1.4:83864445-83864464 | MS.gene73422:CDS | 35.0% | |
| CTACATGAAGCTATAAATCC+TGG | - | chr1.4:83862743-83862762 | None:intergenic | 35.0% | |
| CTAGATGAATTTGAGTCCAT+TGG | - | chr1.4:83863755-83863774 | None:intergenic | 35.0% | |
| GCATAGATTAATGAAACACG+TGG | - | chr1.4:83863209-83863228 | None:intergenic | 35.0% | |
| GTAACTTCTGATAGTAGTAC+AGG | + | chr1.4:83863237-83863256 | MS.gene73422:intron | 35.0% | |
| GTCCAGAATAACTTCTGTAA+AGG | + | chr1.4:83863487-83863506 | MS.gene73422:intron | 35.0% | |
| TAGAATGTGTGAAAAGGCTA+AGG | + | chr1.4:83865021-83865040 | MS.gene73422:CDS | 35.0% | |
| TATCAGGACAAACATGATGA+TGG | + | chr1.4:83863812-83863831 | MS.gene73422:intron | 35.0% | |
| TATGTGAAGGTTAACATGGA+TGG | + | chr1.4:83864444-83864463 | MS.gene73422:CDS | 35.0% | |
| TCATATTAGGCCAATCCATA+AGG | - | chr1.4:83864338-83864357 | None:intergenic | 35.0% | |
| TGACATACTTATTGCGTGTT+TGG | - | chr1.4:83863172-83863191 | None:intergenic | 35.0% | |
| TGTAGATGTACGAATTGCAA+GGG | + | chr1.4:83862758-83862777 | MS.gene73422:intron | 35.0% | |
| TTGCTTATTGCTTGCTTGTT+TGG | + | chr1.4:83862490-83862509 | MS.gene73422:intron | 35.0% | |
| ! | AATTTTTCCTCCACCAAAAG+GGG | - | chr1.4:83862953-83862972 | None:intergenic | 35.0% |
| ! | AGTGTATGATGATGACCTTA+TGG | + | chr1.4:83864320-83864339 | MS.gene73422:intron | 35.0% |
| ! | ATGATGATGACCTTATGGAT+TGG | + | chr1.4:83864325-83864344 | MS.gene73422:CDS | 35.0% |
| ! | GATGATGGCATAATTGATCT+TGG | + | chr1.4:83863827-83863846 | MS.gene73422:CDS | 35.0% |
| !! | ATTGATCTTGGTCTTAGTCT+TGG | + | chr1.4:83863839-83863858 | MS.gene73422:CDS | 35.0% |
| AGGATAGTGAAGACAATTGG+AGG | + | chr1.4:83864865-83864884 | MS.gene73422:CDS | 40.0% | |
| AGGATTGCAAGAAAGAATGC+AGG | + | chr1.4:83865041-83865060 | MS.gene73422:CDS | 40.0% | |
| CGAAGAGTCCATGAATGTAT+CGG | - | chr1.4:83864720-83864739 | None:intergenic | 40.0% | |
| CGTTTAGTTAGGCTGAATCA+TGG | + | chr1.4:83862825-83862844 | MS.gene73422:intron | 40.0% | |
| CTTTGATGAAGAGATAGAGG+GGG | + | chr1.4:83864398-83864417 | MS.gene73422:CDS | 40.0% | |
| GGCTTATGTGAAGGTTAACA+TGG | + | chr1.4:83864440-83864459 | MS.gene73422:CDS | 40.0% | |
| TACTGTCAACATGGAAGACA+TGG | - | chr1.4:83863555-83863574 | None:intergenic | 40.0% | |
| TGTGAAGGTTAACATGGATG+GGG | + | chr1.4:83864446-83864465 | MS.gene73422:CDS | 40.0% | |
| ! | ACTGATTGGCTACCTGAATA+GGG | - | chr1.4:83864795-83864814 | None:intergenic | 40.0% |
| ! | CGCAGTGGTTTTCAAACTTT+TGG | - | chr1.4:83862671-83862690 | None:intergenic | 40.0% |
| ! | CGGTCAATTTGAAGCAATCA+AGG | - | chr1.4:83862901-83862920 | None:intergenic | 40.0% |
| ! | GTGGAAATTCCAAAAGCACA+TGG | - | chr1.4:83863635-83863654 | None:intergenic | 40.0% |
| ! | TACTGATTGGCTACCTGAAT+AGG | - | chr1.4:83864796-83864815 | None:intergenic | 40.0% |
| ! | TCTTGTCTTCCATGTGCTTT+TGG | + | chr1.4:83863623-83863642 | MS.gene73422:intron | 40.0% |
| !! | GAAATACATGTTGGTTCAGC+AGG | + | chr1.4:83863362-83863381 | MS.gene73422:intron | 40.0% |
| !!! | GTGTTATTTTTGCCGTGAAG+TGG | + | chr1.4:83862712-83862731 | MS.gene73422:intron | 40.0% |
| AACACCACAAGAACAAGGGA+TGG | - | chr1.4:83863523-83863542 | None:intergenic | 45.0% | |
| ATGTTGGAATCCGACCAGAT+CGG | + | chr1.4:83862364-83862383 | MS.gene73422:CDS | 45.0% | |
| GAAGACAATTGGAGGACTGT+TGG | + | chr1.4:83864873-83864892 | MS.gene73422:CDS | 45.0% | |
| GGATGAACACATACTTCCAC+AGG | - | chr1.4:83864905-83864924 | None:intergenic | 45.0% | |
| TCAGGTAGCCAATCAGTATC+TGG | + | chr1.4:83864798-83864817 | MS.gene73422:intron | 45.0% | |
| ! | ATGTTCAGTTCCCCTTTTGG+TGG | + | chr1.4:83862940-83862959 | MS.gene73422:intron | 45.0% |
| ! | TGAGAGATGGGCTTATGTGA+AGG | + | chr1.4:83864431-83864450 | MS.gene73422:CDS | 45.0% |
| ! | TGCGCACATGTTTAGAGTCA+CGG | - | chr1.4:83862921-83862940 | None:intergenic | 45.0% |
| !! | GAGGTATTGATGTACCCTTC+TGG | - | chr1.4:83863337-83863356 | None:intergenic | 45.0% |
| AACATGGATGGGGTCTCCAT+TGG | + | chr1.4:83864456-83864475 | MS.gene73422:CDS | 50.0% | |
| AAGCCCATCTCTCATTGCTC+TGG | - | chr1.4:83864425-83864444 | None:intergenic | 50.0% | |
| ATCCTGGCTTCTCCACTTCA+CGG | - | chr1.4:83862727-83862746 | None:intergenic | 50.0% | |
| CGAATTGCAAGGGTTTGACG+CGG | + | chr1.4:83862768-83862787 | MS.gene73422:intron | 50.0% | |
| GGTCCAGAGCAATGAGAGAT+GGG | + | chr1.4:83864419-83864438 | MS.gene73422:CDS | 50.0% | |
| TTGGCCATCCCTTGTTCTTG+TGG | + | chr1.4:83863516-83863535 | MS.gene73422:intron | 50.0% | |
| ! | ACATGACTGCCACTTCCCAA+GGG | - | chr1.4:83862394-83862413 | None:intergenic | 50.0% |
| ! | CACATTGAGACGCGGTTTTG+TGG | - | chr1.4:83862695-83862714 | None:intergenic | 50.0% |
| ! | CGCATGTTCAGTTCCCCTTT+TGG | + | chr1.4:83862937-83862956 | MS.gene73422:intron | 50.0% |
| ! | TTCAGTTCCCCTTTTGGTGG+AGG | + | chr1.4:83862943-83862962 | MS.gene73422:intron | 50.0% |
| CAAGGGAACACCGATCTGGT+CGG | - | chr1.4:83862377-83862396 | None:intergenic | 55.0% | |
| GGGTCCAGAGCAATGAGAGA+TGG | + | chr1.4:83864418-83864437 | MS.gene73422:CDS | 55.0% | |
| TGGATGGGGTCTCCATTGGT+AGG | + | chr1.4:83864460-83864479 | MS.gene73422:CDS | 55.0% | |
| TTCCCAAGGGAACACCGATC+TGG | - | chr1.4:83862381-83862400 | None:intergenic | 55.0% | |
| ! | ATCGGTGTTCCCTTGGGAAG+TGG | + | chr1.4:83862382-83862401 | MS.gene73422:CDS | 55.0% |
| ! | GACATGACTGCCACTTCCCA+AGG | - | chr1.4:83862395-83862414 | None:intergenic | 55.0% |
| ! | GACCAGATCGGTGTTCCCTT+GGG | + | chr1.4:83862376-83862395 | MS.gene73422:CDS | 55.0% |
| !! | GGACTGTTGGTGATGTCCTG+TGG | + | chr1.4:83864886-83864905 | MS.gene73422:CDS | 55.0% |
| TGCCGTGAAGTGGAGAAGCC+AGG | + | chr1.4:83862722-83862741 | MS.gene73422:intron | 60.0% | |
| ! | CGACCAGATCGGTGTTCCCT+TGG | + | chr1.4:83862375-83862394 | MS.gene73422:CDS | 60.0% |
| !! | ACGCGGTTTTGTGGTCGCAG+TGG | - | chr1.4:83862686-83862705 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 83862364 | 83865085 | 83862364 | ID=MS.gene73422 |
| chr1.4 | mRNA | 83862364 | 83865085 | 83862364 | ID=MS.gene73422.t1;Parent=MS.gene73422 |
| chr1.4 | exon | 83862364 | 83862447 | 83862364 | ID=MS.gene73422.t1.exon1;Parent=MS.gene73422.t1 |
| chr1.4 | CDS | 83862364 | 83862447 | 83862364 | ID=cds.MS.gene73422.t1;Parent=MS.gene73422.t1 |
| chr1.4 | exon | 83863818 | 83863899 | 83863818 | ID=MS.gene73422.t1.exon2;Parent=MS.gene73422.t1 |
| chr1.4 | CDS | 83863818 | 83863899 | 83863818 | ID=cds.MS.gene73422.t1;Parent=MS.gene73422.t1 |
| chr1.4 | exon | 83864322 | 83864546 | 83864322 | ID=MS.gene73422.t1.exon3;Parent=MS.gene73422.t1 |
| chr1.4 | CDS | 83864322 | 83864546 | 83864322 | ID=cds.MS.gene73422.t1;Parent=MS.gene73422.t1 |
| chr1.4 | exon | 83864802 | 83864910 | 83864802 | ID=MS.gene73422.t1.exon4;Parent=MS.gene73422.t1 |
| chr1.4 | CDS | 83864802 | 83864910 | 83864802 | ID=cds.MS.gene73422.t1;Parent=MS.gene73422.t1 |
| chr1.4 | exon | 83865013 | 83865085 | 83865013 | ID=MS.gene73422.t1.exon5;Parent=MS.gene73422.t1 |
| chr1.4 | CDS | 83865013 | 83865085 | 83865013 | ID=cds.MS.gene73422.t1;Parent=MS.gene73422.t1 |
| Gene Sequence |
| Protein sequence |
