AlfalfaGEDB | MS.gene73566

M. sativa cultivar XinJiangDaYe / MS.gene73566

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0097159 GO:0097367 GO:0098542 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00967.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73566.t1	KEH27021.1	81.6	495	52	4	1	494	1	457	6.90E-216	760

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73566.t1	F4HQ20	47.9	284	103	4	256	494	365	648	5.6e-73	276.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73566.t1	A0A072UC46	81.6	495	52	4	1	494	1	457	5.0e-216	760.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051490	MS.gene73566	0.82587	3.70E-54	-1.69E-46
MS.gene05410	MS.gene73566	0.827074	1.91E-54	-1.69E-46
MS.gene05414	MS.gene73566	0.807449	5.03E-50	-1.69E-46
MS.gene054576	MS.gene73566	0.802999	4.30E-49	-1.69E-46
MS.gene058526	MS.gene73566	0.804458	2.14E-49	-1.69E-46
MS.gene058528	MS.gene73566	0.804684	1.92E-49	-1.69E-46
MS.gene061047	MS.gene73566	0.81164	6.33E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000345	MS.gene73566	PPI
MS.gene000697	MS.gene73566	PPI
MS.gene021767	MS.gene73566	PPI
MS.gene021768	MS.gene73566	PPI
MS.gene057573	MS.gene73566	PPI
MS.gene06927	MS.gene73566	PPI
MS.gene45361	MS.gene73566	PPI
MS.gene45363	MS.gene73566	PPI
MS.gene49523	MS.gene73566	PPI
MS.gene49524	MS.gene73566	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73566.t1	MTR_6g083270	81.818	495	51	4	1	494	1	457	0.0	791
MS.gene73566.t1	MTR_6g083210	80.420	286	12	1	253	494	17	302	4.37e-164	466
MS.gene73566.t1	MTR_6g083300	77.544	285	20	1	253	493	17	301	8.18e-158	450
MS.gene73566.t1	MTR_6g082950	74.823	282	27	1	256	493	140	421	5.50e-150	435
MS.gene73566.t1	MTR_6g082870	74.386	285	29	1	253	493	374	658	3.66e-147	436
MS.gene73566.t1	MTR_6g083760	74.476	286	29	1	253	494	337	622	1.10e-146	434
MS.gene73566.t1	MTR_6g082860	66.784	283	49	2	256	494	76	357	1.00e-127	376
MS.gene73566.t1	MTR_6g082830	66.431	283	50	2	256	494	20	301	2.69e-126	370
MS.gene73566.t1	MTR_6g083780	63.986	286	58	2	253	494	366	650	6.53e-118	361
MS.gene73566.t1	MTR_6g083290	92.994	157	11	0	337	493	157	313	3.44e-103	311

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73566.t1	AT1G66910	47.735	287	105	4	253	494	359	645	1.78e-83	271
MS.gene73566.t1	AT1G66910	47.735	287	105	4	253	494	362	648	3.16e-83	271
MS.gene73566.t1	AT5G38280	49.141	291	93	6	253	493	345	630	8.14e-83	270
MS.gene73566.t1	AT5G38280	49.141	291	93	6	253	493	345	630	1.07e-82	270
MS.gene73566.t1	AT4G18250	51.613	279	86	7	253	482	369	647	2.36e-81	266
MS.gene73566.t1	AT1G66980	47.931	290	101	6	253	494	802	1089	2.98e-80	270
MS.gene73566.t1	AT1G66980	47.931	290	101	6	253	494	819	1106	3.62e-80	270
MS.gene73566.t1	AT1G66980	47.931	290	101	6	253	494	848	1135	4.17e-80	271
MS.gene73566.t1	AT1G66980	47.931	290	101	6	253	494	846	1133	4.32e-80	270
MS.gene73566.t1	AT5G38250	48.913	276	101	5	253	489	328	602	1.63e-78	257

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Find 111 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGATGTTTATAGTTA+TGG	0.333532	6.4:-57805875	MS.gene73566:CDS
AAATGTCTATTCCACACTTC+TGG	0.331819	6.4:+57805914	None:intergenic
AAATTCTTCACCGTTTCCTT+TGG	0.361382	6.4:+57806330	None:intergenic
AACAAGGTGTAAGAAACAAG+TGG	0.510719	6.4:-57809443	MS.gene73566:CDS
AACAATTCTTACTGTTTGGA+TGG	0.466031	6.4:+57808745	None:intergenic
AAGAATGTTGGTGATGGTGT+TGG	0.606417	6.4:+57807427	None:intergenic
AAGAATGTTGGTGATGGTGT+TGG	0.606417	6.4:+57807475	None:intergenic
AAGAATGTTGGTGATGGTTT+TGG	0.373918	6.4:+57807523	None:intergenic
AAGATATTGAATTCATCCAA+AGG	0.617351	6.4:-57806346	MS.gene73566:CDS
AAGTGGGACTTGAACACATC+AGG	0.508499	6.4:-57809426	MS.gene73566:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCACACTCTTAACTTA+AGG	-	chr6.4:57806144-57806163	MS.gene73566:CDS	30.0%
AACAATTCTTACTGTTTGGA+TGG	+	chr6.4:57806372-57806391	None:intergenic	30.0%
AACTCTTTCAAGGTTAAACT+TGG	-	chr6.4:57808684-57808703	MS.gene73566:CDS	30.0%
AATTCGAATGTGTAGATAGA+AGG	-	chr6.4:57808016-57808035	MS.gene73566:intron	30.0%
ACTCTAATTGGCAAATGAAA+AGG	-	chr6.4:57807900-57807919	MS.gene73566:intron	30.0%
ATTTCAATGTCAGATCAAAG+AGG	-	chr6.4:57809158-57809177	MS.gene73566:intron	30.0%
CTTCAAAACAAAATCCAAGA+AGG	+	chr6.4:57808860-57808879	None:intergenic	30.0%
GAAAATGACAAACTCTTTCA+AGG	-	chr6.4:57808674-57808693	MS.gene73566:CDS	30.0%
GTAAGATTTGATAAGGGATT+AGG	+	chr6.4:57807717-57807736	None:intergenic	30.0%
GTTGCTAAAAGATACCTTTA+TGG	+	chr6.4:57807030-57807049	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	57805550	57809586	57805550	ID=MS.gene73566
chr6.4	mRNA	57805550	57809586	57805550	ID=MS.gene73566.t1;Parent=MS.gene73566
chr6.4	exon	57809305	57809586	57809305	ID=MS.gene73566.t1.exon1;Parent=MS.gene73566.t1
chr6.4	CDS	57809305	57809586	57809305	ID=cds.MS.gene73566.t1;Parent=MS.gene73566.t1
chr6.4	exon	57808627	57808822	57808627	ID=MS.gene73566.t1.exon2;Parent=MS.gene73566.t1
chr6.4	CDS	57808627	57808822	57808627	ID=cds.MS.gene73566.t1;Parent=MS.gene73566.t1
chr6.4	exon	57807609	57807640	57807609	ID=MS.gene73566.t1.exon3;Parent=MS.gene73566.t1
chr6.4	CDS	57807609	57807640	57807609	ID=cds.MS.gene73566.t1;Parent=MS.gene73566.t1
chr6.4	exon	57807374	57807587	57807374	ID=MS.gene73566.t1.exon4;Parent=MS.gene73566.t1
chr6.4	CDS	57807374	57807587	57807374	ID=cds.MS.gene73566.t1;Parent=MS.gene73566.t1
chr6.4	exon	57807201	57807242	57807201	ID=MS.gene73566.t1.exon5;Parent=MS.gene73566.t1
chr6.4	CDS	57807201	57807242	57807201	ID=cds.MS.gene73566.t1;Parent=MS.gene73566.t1
chr6.4	exon	57806321	57806400	57806321	ID=MS.gene73566.t1.exon6;Parent=MS.gene73566.t1
chr6.4	CDS	57806321	57806400	57806321	ID=cds.MS.gene73566.t1;Parent=MS.gene73566.t1
chr6.4	exon	57805550	57806188	57805550	ID=MS.gene73566.t1.exon7;Parent=MS.gene73566.t1
chr6.4	CDS	57805550	57806188	57805550	ID=cds.MS.gene73566.t1;Parent=MS.gene73566.t1

Gene Sequence

>MS.gene73566

ATGTTGAAGCAATTTTTTCTTCTGGATTTGGTGTTGATATTTTGTGTTCTAGCATTGGCCTCAGCTCAAAGTGCAAACAATGTGACTGCTACATATCAGTCTTTCAATTCTCCAGCAACTAAACAAGGTGTAAGAAACAAGTGGGACTTGAACACATCAGGTGTGTTATGTGCAGCTCAAGATGGGAACAAATCATTGTCATGGCGAAGCAAATATGGTTGGGCTGCCTTTTGTGGACCTGTTGGTCCTGTTGGCAAATCTGCTTGTGGCAAGTGCTTAAAAGTATGTATATGTATAATGTTTGCAGTTTACTTATTTAATTTTTGTCAAGTAGTTTGGTGTGAATATCACACATTACGAGTTCAAATATTTGCGCCCTAAAATGTCTTTTCAGGTTGCAGCGTCCACATGAACTGTATTTTTTTCTTTGGAAGAAAGTTCTATAAAATACAATTTTTTTAACTATTTCAAGGGTGACTTGAATCTATAAGATCTGTAACACATTTAGAATGCAAAAACAACTAGTATTTGACTATATTTTCTATTTTTCGAGTCAACATTAGAAAACAACTAATATTTGAACTTTACGGGTTTAAATCCACACTCTTAACTTAAGGCAATCAATGTAACAAAAATATTTACAATATTGTTAGTTTCACGTAGTATTTATCAATTTCGGCCTGAGTGAATGATGATGAATCTCTAGTGGTTCAATTCAAACCAATATCCATAGATTTCATTCATTTTGTCACCCCTAATTGCAGGTGACAAACCCAGATGGTGGGAATTCAGCAACGCAACAACAATCAATAACTCCAACCATCCAAACAGTAAGAATTGTTGATAAGTGTAGCAATGGAGGGCTTGACTTGGATATGGATGTCTTTCAACTGCTTGACACATCTGGGGATGGGAATGCTCAAGGTTACCTCTTGGTGGATTATGAATTTGTGGACTGTGGTACTACTACTTATCTCTTTGACCTTATTATAAGTTGATTATATTATAATTCTAATTTCAATAAAAGAAATCATCAACATGTTTTTGCCAAATCCTCGTTTTTTAAAATTGGCATGTTTGAGAACTAGAATGACATGATAAAGATTGCTGTTAAAGTAAATATTACAAACAATTAGATGAGTAAATCTATAGAACTATCCAAATTCAACTTTTTTTTACGGTAGCTTTTGAAATCACGTGATACCAACTATTTGTCGGATGCTTCACAAGTTGAGATTTGTTGACTAGTTGACATTGACTTAGGAGCATACATTTAGATTCACTGTATATTGGACAAAAGATTAAACATTTTGTTCAAGGGTCCAGTTACTCTTTTTCACCTAGCTTAAAAAATTATATCAGTAAAAAATAACTGTAATTTTGTCAAAACCATCATAATATTATACAACTATATATATATATATATATATATATATATATATATATATATATATATATGGGTTTTCCTATAAGCCACCCATAAAGGTATCTTTTAGCAACTCACACTTCAAGGTGTGATTTCCACTTTTTAGTTATAACTTTGTTAAAAGACACCTTCATAAAAGGTGTCTTCTAGCAAAACCCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATGTTCATATGAAGTTTCACCTAGCTAAAAAAAATTGTTCCTCCTTCAAAAAAAAAATTCCTAAATAATTCTTTGACATGGAATCATTCATTCATAACTTTTTCAAATTAAGCTTTCAAACACTATTGATCATCTTTTTAATTTAATTATCTTATTTTATTGTTTTCTAATTTGAATTGAAGTTTATCTTGTAAATTAGGTTAAAACATAATTTTTCATTTTGTATTTTATTAATGAATTAATTATTTGAAATTTTGTGATTGGTTGCTTTTAAAGGTGATGTGTTAACTTCGACTTCAAGTAAGAATGTAACCGTTAGATCAACTAAGAATGTAACCGTTAGATCAACTACATTATCTCCGTCACCAGCACCAAAACCATCACCAACATTCTTATCGCCTTTATCTTCGTCACCAGCACCAACACCATCACCAACATTCTTATCGCCTTTATCTCCGTCACCAGCACCAACACCATCACCAACATTCTTATCGCCTAATCCCTTATCAAATCTTACTCAACAAATTCATCGTGCTACAACTGGTATGTACTTCACTTATCTACCTCTTTGATCATAAATTTTGTAATCTATGAGACTATTTGTCTATAAAATTATTATTAAAGCAAAATCTATTCCAACTCCTCTTGCTCTTTGTGCTTATGATTGTTTGCAGGTAGTCACTCTAATTGGCAAATGAAAAGGAAAGTCATTATAGGTAATATATCAAACTTCAGTTTAAACGTTATCAATCTTTAATAAATACATTTGCAAAGAAAGAACGAGTAGATACTAGTCAATTCGAATGTGTAGATAGAAGGATAAAAAGTTGTAGGGAGATTTGCTATGTTGAGGGTCCAATCAAGACGTGGATTCTAATTAGCACACCTTATAATTTTTTTTTTCTTGAAGGAATTAACACCTTATACTTAATGTGTGAGTTTCACTTATATACTTTTTAAACAAAAATAAATAAATAATACTAGATAATCAATCTCAAATCACGTGTCTTCCATATTTTTAACCTAAAATGATTATTCATATTTTAGCATGTCTTTGATAACATTATGTTTGTGAATTCTAACCAAAATTCTTTGCTCAACTTTACCAAGACAATTATAATTAAGAGTTAGAAGGAGATCATTGACACAACAAATAACTAAATAAGAAAAAAAATATAAGTCTTATATAAATAACTACATTCAAAAAAAAAATTATTTGTTCCGCTTAGTTTCTTCCATCATCACGTAATTAATAAATTTTCCTTAAAAACAGGTGTTGTAAGTGCAGTCATGGCTGTATTGATAATGTGCATCATTATTTATTGTCTTAGAAGCAAGTCATCAATACGACAGGGAAAGTTTTGGTTTAGAACCAAGAATGATAACAATGTTGAAGCATTTTTAAGAGATCATGGAGCTTTATTGCAGAAAAGATACAAATTTTCTGAAATAAAGAAAATGACAAACTCTTTCAAGGTTAAACTTGGTCAAGGGGGTTTTGGTGTTGTGTACAAAGGAAAGTTATTCAATGGTTGTGACGTTGCTATAAAGATATTGAATTCATCCAAAGGAAACGGTGAAGAATTTATTAACGAGGTTTCTAGTATTTCTAGAACCTCACATGTTAATGTTGTTACCCTTCTTGGATTTTGTTTTGAAGGCACAAAAAAAGCACTCATATATGAATTTATGTCTAATGGTTCTCTTGACAAATTTATTTACAATAAGGGACCTGAGACAATTGCATCTTTGAGCTGGGATAATTTGTATCAAATTGCAAAAGGTATAGCTCGTGGACTAGAATACTTGCATAGAGGATGTACCACTCGAATTTTACATTTCGACATAAAACCACATAATATTCTTTTAGATGAGAATTTATGTCCAAAGATTTCAGATTTTGGACTTGCAAAACTTTGTCCAAAAAAAGAGAGCATTATTTCAATGTCAGATCAAAGAGGGACAATGGGATATGTAGCTCCAGAAGTGTGGAATAGACATTTTGGAGGAGTTTCACACAAATCTGATGTTTATAGTTATGGAATGATGTTGTTGGAAATGGTTGGAGGGAGGAAAAACATTAATGGTGATGCAAGTCACACAAGTGAGATATACTTTCCACATTGGGTATACAGTAGGCTTAAGCTTGGCACTAATTTGAGACCTGATGGAGTTATGGATACAGAAGAGGATGAGATCGCAAGGAGAATGACTATTGTGGGTTTATGGTGCATTCAAACATTTCCAAGTGATAGACCTACAATGAGTAAAGTGATTGAAATGTTAGAAGTTAATATGAATTCTCTGGAAATGCCACCAAAACCATTGCATTCATCTCCTACAAGATCAGTATCAGAGTCTTCTTAA

Protein sequence

>MS.gene73566.t1

MLKQFFLLDLVLIFCVLALASAQSANNVTATYQSFNSPATKQGVRNKWDLNTSGVLCAAQDGNKSLSWRSKYGWAAFCGPVGPVGKSACGKCLKVTNPDGGNSATQQQSITPTIQTVRIVDKCSNGGLDLDMDVFQLLDTSGDGNAQGYLLVDYEFVDCGDVLTSTSSKNNVTVRSTTLSPSPAPKPSPTFLSPLSSSPAPTPSPTFLSPLSPSPAPTPSPTFLSPNPLSNLTQQIHRATTGSHSNWQMKRKVIIGKLFNGCDVAIKILNSSKGNGEEFINEGPETIASLSWDNLYQIAKGIARGLEYLHRGCTTRILHFDIKPHNILLDENLCPKISDFGLAKLCPKKESIISMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINGDASHTSEIYFPHWVYSRLKLGTNLRPDGVMDTEEDEIARRMTIVGLWCIQTFPSDRPTMSKVIEMLEVNMNSLEMPPKPLHSSPTRSVSESS