Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061047.t1 | XP_013466724.1 | 95.9 | 196 | 8 | 0 | 5 | 200 | 676 | 871 | 2.90E-104 | 387.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061047.t1 | C6KIE6 | 51.5 | 206 | 81 | 4 | 5 | 200 | 664 | 860 | 2.5e-48 | 193.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061047.t1 | A0A072VFF3 | 95.9 | 196 | 8 | 0 | 5 | 200 | 676 | 871 | 2.1e-104 | 387.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049409 | MS.gene061047 | 0.815323 | 9.81E-52 | -1.69E-46 |
| MS.gene04998 | MS.gene061047 | 0.829015 | 6.52E-55 | -1.69E-46 |
| MS.gene053094 | MS.gene061047 | 0.82697 | 2.02E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene061047 | 0.80216 | 6.40E-49 | -1.69E-46 |
| MS.gene05410 | MS.gene061047 | 0.801799 | 7.59E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene061047 | 0.857016 | 2.17E-62 | -1.69E-46 |
| MS.gene054893 | MS.gene061047 | 0.848582 | 5.59E-60 | -1.69E-46 |
| MS.gene058526 | MS.gene061047 | 0.806461 | 8.13E-50 | -1.69E-46 |
| MS.gene058527 | MS.gene061047 | 0.804333 | 2.27E-49 | -1.69E-46 |
| MS.gene058528 | MS.gene061047 | 0.807877 | 4.08E-50 | -1.69E-46 |
| MS.gene05861 | MS.gene061047 | 0.815034 | 1.14E-51 | -1.69E-46 |
| MS.gene05969 | MS.gene061047 | 0.805346 | 1.40E-49 | -1.69E-46 |
| MS.gene059774 | MS.gene061047 | 0.851474 | 8.67E-61 | -1.69E-46 |
| MS.gene060412 | MS.gene061047 | 0.83794 | 3.86E-57 | -1.69E-46 |
| MS.gene060413 | MS.gene061047 | 0.80259 | 5.22E-49 | -1.69E-46 |
| MS.gene060697 | MS.gene061047 | 0.849748 | 2.65E-60 | -1.69E-46 |
| MS.gene061047 | MS.gene061682 | 0.852966 | 3.26E-61 | -1.69E-46 |
| MS.gene061047 | MS.gene062327 | 0.801733 | 7.83E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene063094 | 0.833199 | 6.12E-56 | -1.69E-46 |
| MS.gene061047 | MS.gene064415 | 0.849552 | 3.01E-60 | -1.69E-46 |
| MS.gene061047 | MS.gene064844 | 0.826237 | 3.03E-54 | -1.69E-46 |
| MS.gene061047 | MS.gene06539 | 0.833188 | 6.16E-56 | -1.69E-46 |
| MS.gene061047 | MS.gene065460 | 0.805923 | 1.06E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene065886 | 0.810946 | 8.95E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene066272 | 0.857846 | 1.24E-62 | -1.69E-46 |
| MS.gene061047 | MS.gene066513 | 0.832345 | 9.97E-56 | -1.69E-46 |
| MS.gene061047 | MS.gene06784 | 0.826749 | 2.29E-54 | -1.69E-46 |
| MS.gene061047 | MS.gene069024 | 0.80023 | 1.59E-48 | -1.69E-46 |
| MS.gene061047 | MS.gene069576 | 0.801755 | 7.75E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene069840 | 0.826776 | 2.25E-54 | -1.69E-46 |
| MS.gene061047 | MS.gene070275 | 0.879294 | 1.40E-69 | -1.69E-46 |
| MS.gene061047 | MS.gene073306 | 0.859052 | 5.40E-63 | -1.69E-46 |
| MS.gene061047 | MS.gene073428 | 0.80085 | 1.19E-48 | -1.69E-46 |
| MS.gene061047 | MS.gene073756 | 0.801438 | 9.00E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene074100 | 0.853604 | 2.14E-61 | -1.69E-46 |
| MS.gene061047 | MS.gene07815 | 0.815068 | 1.12E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene08120 | 0.812237 | 4.69E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene09697 | 0.808194 | 3.49E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene20608 | 0.832698 | 8.15E-56 | -1.69E-46 |
| MS.gene061047 | MS.gene20610 | 0.844261 | 8.43E-59 | -1.69E-46 |
| MS.gene061047 | MS.gene21510 | 0.805738 | 1.15E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene25879 | 0.848434 | 6.14E-60 | -1.69E-46 |
| MS.gene061047 | MS.gene26958 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene27318 | 0.80522 | 1.48E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene28798 | 0.813307 | 2.73E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene29036 | 0.827409 | 1.59E-54 | -1.69E-46 |
| MS.gene061047 | MS.gene29096 | 0.829383 | 5.31E-55 | -1.69E-46 |
| MS.gene061047 | MS.gene30478 | 0.808585 | 2.88E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene30630 | 0.803664 | 3.13E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene30634 | 0.807069 | 6.05E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene32801 | 0.830743 | 2.47E-55 | -1.69E-46 |
| MS.gene061047 | MS.gene34340 | 0.812523 | 4.06E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene34444 | 0.818461 | 1.94E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene36865 | 0.849755 | 2.64E-60 | -1.69E-46 |
| MS.gene061047 | MS.gene36866 | 0.839732 | 1.33E-57 | -1.69E-46 |
| MS.gene061047 | MS.gene36870 | 0.841491 | 4.60E-58 | -1.69E-46 |
| MS.gene061047 | MS.gene37412 | 0.810684 | 1.02E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene38123 | 0.855716 | 5.24E-62 | -1.69E-46 |
| MS.gene061047 | MS.gene40123 | 0.81181 | 5.81E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene40330 | 0.808161 | 3.55E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene41022 | 0.823105 | 1.66E-53 | -1.69E-46 |
| MS.gene061047 | MS.gene43381 | 0.849193 | 3.78E-60 | -1.69E-46 |
| MS.gene061047 | MS.gene45307 | 0.816017 | 6.87E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene46442 | 0.811255 | 7.67E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene47134 | 0.83331 | 5.74E-56 | -1.69E-46 |
| MS.gene061047 | MS.gene47195 | 0.805294 | 1.43E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene49158 | 0.808651 | 2.79E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene51300 | 0.809766 | 1.61E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene51957 | 0.816751 | 4.71E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene54199 | 0.819458 | 1.15E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene54703 | 0.827257 | 1.73E-54 | -1.69E-46 |
| MS.gene061047 | MS.gene54704 | 0.826446 | 2.70E-54 | -1.69E-46 |
| MS.gene061047 | MS.gene55496 | 0.839094 | 1.95E-57 | -1.69E-46 |
| MS.gene061047 | MS.gene55545 | 0.814714 | 1.34E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene57124 | 0.805637 | 1.21E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene57128 | 0.853113 | 2.96E-61 | -1.69E-46 |
| MS.gene061047 | MS.gene57519 | 0.815037 | 1.14E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene57521 | 0.810387 | 1.18E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene58358 | 0.851641 | 7.77E-61 | -1.69E-46 |
| MS.gene061047 | MS.gene59030 | 0.84657 | 2.00E-59 | -1.69E-46 |
| MS.gene061047 | MS.gene59032 | 0.832862 | 7.42E-56 | -1.69E-46 |
| MS.gene061047 | MS.gene59086 | 0.866403 | 2.92E-65 | -1.69E-46 |
| MS.gene061047 | MS.gene60615 | 0.836371 | 9.73E-57 | -1.69E-46 |
| MS.gene061047 | MS.gene61462 | 0.846224 | 2.48E-59 | -1.69E-46 |
| MS.gene061047 | MS.gene62461 | 0.865489 | 5.69E-65 | -1.69E-46 |
| MS.gene061047 | MS.gene62676 | 0.818176 | 2.25E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene62677 | 0.81927 | 1.27E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene66545 | 0.814025 | 1.90E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene66953 | 0.81323 | 2.84E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene68141 | 0.822899 | 1.85E-53 | -1.69E-46 |
| MS.gene061047 | MS.gene71511 | 0.803457 | 3.45E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene71879 | 0.852405 | 4.72E-61 | -1.69E-46 |
| MS.gene061047 | MS.gene72611 | 0.835785 | 1.37E-56 | -1.69E-46 |
| MS.gene061047 | MS.gene72621 | 0.801813 | 7.54E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene72748 | 0.801713 | 7.91E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene73566 | 0.81164 | 6.33E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene74452 | 0.815214 | 1.04E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene75413 | 0.805632 | 1.22E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene75941 | 0.83456 | 2.79E-56 | -1.69E-46 |
| MS.gene061047 | MS.gene76244 | 0.802233 | 6.18E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene79120 | 0.800231 | 1.59E-48 | -1.69E-46 |
| MS.gene061047 | MS.gene79568 | 0.859593 | 3.72E-63 | -1.69E-46 |
| MS.gene061047 | MS.gene79758 | 0.846072 | 2.73E-59 | -1.69E-46 |
| MS.gene061047 | MS.gene80821 | 0.846416 | 2.20E-59 | -1.69E-46 |
| MS.gene061047 | MS.gene81831 | 0.817702 | 2.87E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene83022 | 0.806735 | 7.12E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene83853 | 0.850027 | 2.21E-60 | -1.69E-46 |
| MS.gene061047 | MS.gene84162 | 0.873344 | 1.58E-67 | -1.69E-46 |
| MS.gene061047 | MS.gene84165 | 0.816909 | 4.34E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene85613 | 0.806477 | 8.07E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene87512 | 0.804565 | 2.03E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene90533 | 0.800861 | 1.18E-48 | -1.69E-46 |
| MS.gene061047 | MS.gene92076 | 0.808746 | 2.66E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene92364 | 0.810571 | 1.08E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene93972 | 0.817887 | 2.61E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene93985 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene95287 | 0.844803 | 6.03E-59 | -1.69E-46 |
| MS.gene061047 | MS.gene95655 | 0.809065 | 2.27E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene96344 | 0.866156 | 3.50E-65 | -1.69E-46 |
| MS.gene061047 | MS.gene97013 | 0.801826 | 7.50E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene99894 | 0.800428 | 1.45E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061047.t1 | MTR_1g034300 | 95.918 | 196 | 8 | 0 | 5 | 200 | 676 | 871 | 5.50e-123 | 368 |
| MS.gene061047.t1 | MTR_1g034300 | 95.918 | 196 | 8 | 0 | 5 | 200 | 675 | 870 | 6.24e-123 | 368 |
| MS.gene061047.t1 | MTR_5g018510 | 50.262 | 191 | 93 | 1 | 4 | 192 | 711 | 901 | 8.36e-64 | 212 |
| MS.gene061047.t1 | MTR_5g018510 | 50.526 | 190 | 92 | 1 | 5 | 192 | 711 | 900 | 1.04e-63 | 211 |
| MS.gene061047.t1 | MTR_8g079010 | 51.685 | 178 | 84 | 1 | 5 | 180 | 588 | 765 | 5.57e-60 | 200 |
| MS.gene061047.t1 | MTR_6g071360 | 44.828 | 174 | 84 | 2 | 5 | 176 | 687 | 850 | 2.13e-46 | 163 |
| MS.gene061047.t1 | MTR_5g027970 | 43.820 | 178 | 87 | 3 | 5 | 177 | 644 | 813 | 2.82e-44 | 157 |
| MS.gene061047.t1 | MTR_1g015750 | 28.758 | 153 | 84 | 4 | 18 | 170 | 226 | 353 | 1.79e-17 | 79.7 |
| MS.gene061047.t1 | MTR_1g015750 | 28.758 | 153 | 84 | 4 | 18 | 170 | 234 | 361 | 2.15e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061047.t1 | AT4G34390 | 51.456 | 206 | 81 | 4 | 5 | 200 | 625 | 821 | 2.40e-58 | 196 |
| MS.gene061047.t1 | AT4G34390 | 51.456 | 206 | 81 | 4 | 5 | 200 | 664 | 860 | 3.29e-58 | 196 |
| MS.gene061047.t1 | AT2G23460 | 47.872 | 188 | 91 | 2 | 5 | 192 | 701 | 881 | 4.03e-55 | 187 |
| MS.gene061047.t1 | AT1G31930 | 42.857 | 189 | 95 | 3 | 5 | 188 | 651 | 831 | 4.08e-44 | 156 |
| MS.gene061047.t1 | AT1G31930 | 42.857 | 189 | 95 | 3 | 5 | 188 | 651 | 831 | 4.08e-44 | 156 |
| MS.gene061047.t1 | AT1G31930 | 42.857 | 189 | 95 | 3 | 5 | 188 | 651 | 831 | 4.08e-44 | 156 |
| MS.gene061047.t1 | AT1G31930 | 42.857 | 189 | 95 | 3 | 5 | 188 | 651 | 831 | 4.08e-44 | 156 |
| MS.gene061047.t1 | AT1G31930 | 42.857 | 189 | 95 | 3 | 5 | 188 | 651 | 831 | 4.08e-44 | 156 |
| MS.gene061047.t1 | AT1G31930 | 42.857 | 189 | 95 | 3 | 5 | 188 | 651 | 831 | 4.08e-44 | 156 |
| MS.gene061047.t1 | AT2G26300 | 27.451 | 153 | 86 | 3 | 18 | 170 | 225 | 352 | 1.68e-18 | 82.8 |
| MS.gene061047.t1 | AT2G26300 | 27.451 | 153 | 86 | 3 | 18 | 170 | 225 | 352 | 1.68e-18 | 82.8 |
Find 30 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCTTCTTCTTGAAATT+TGG | 0.098655 | 1.4:-18575748 | None:intergenic |
| CTATTTGTTTCTTTGGTTAC+TGG | 0.199983 | 1.4:+18575985 | MS.gene061047:CDS |
| AAGAACTCTATTTGTTTCTT+TGG | 0.238160 | 1.4:+18575978 | MS.gene061047:CDS |
| TTCCTCAAGAAGATCGAATT+TGG | 0.241366 | 1.4:-18575785 | None:intergenic |
| AACCAGTCACACCTTGTTAA+TGG | 0.243332 | 1.4:-18575823 | None:intergenic |
| AGAGCTTCATCGATCGTATC+AGG | 0.331731 | 1.4:-18576015 | None:intergenic |
| CTAATGAGTTGGTATCTGTT+AGG | 0.342148 | 1.4:-18575547 | None:intergenic |
| AGAAACAAATAGAGTTCTTT+CGG | 0.367235 | 1.4:-18575974 | None:intergenic |
| TTGTGATTGTTACTTATAAC+CGG | 0.382473 | 1.4:-18575859 | None:intergenic |
| GACTTATCATTAACAATAGA+AGG | 0.384451 | 1.4:-18576078 | None:intergenic |
| ATCGATGAAGCTCTTCGATA+TGG | 0.397848 | 1.4:+18576024 | MS.gene061047:CDS |
| GTACTCATCGTAGTCGGTTA+AGG | 0.438650 | 1.4:-18575650 | None:intergenic |
| TTCCATTAACAAGGTGTGAC+TGG | 0.468855 | 1.4:+18575821 | MS.gene061047:CDS |
| TAATGAGTTGGTATCTGTTA+GGG | 0.471976 | 1.4:-18575546 | None:intergenic |
| TGAAGTACTTGCATCTCCAT+TGG | 0.478445 | 1.4:-18576118 | None:intergenic |
| TGGTAGAGAGGTTATTGAAT+GGG | 0.498729 | 1.4:+18576044 | MS.gene061047:CDS |
| AAAGCACTTTGAGCTAATGA+AGG | 0.521537 | 1.4:-18575907 | None:intergenic |
| TTGGATGTACTCTAATGAGT+TGG | 0.523296 | 1.4:-18575558 | None:intergenic |
| CACCAAATTCGATCTTCTTG+AGG | 0.526416 | 1.4:+18575783 | MS.gene061047:CDS |
| ATGGTAGAGAGGTTATTGAA+TGG | 0.529478 | 1.4:+18576043 | MS.gene061047:CDS |
| TGGAGAAAACTGCAAGTGGT+TGG | 0.551701 | 1.4:+18575588 | MS.gene061047:CDS |
| GAGATTACTTCAACAACCAA+TGG | 0.567210 | 1.4:+18576102 | MS.gene061047:CDS |
| ATCGTAGTCGGTTAAGGAGA+CGG | 0.579802 | 1.4:-18575644 | None:intergenic |
| AGTTGCTACAAACAAAATGT+TGG | 0.587657 | 1.4:+18575690 | MS.gene061047:CDS |
| GAGTACATTATAGACAGTAA+AGG | 0.599991 | 1.4:+18575667 | MS.gene061047:CDS |
| TCCTTGGAGAAAACTGCAAG+TGG | 0.617052 | 1.4:+18575584 | MS.gene061047:CDS |
| TCGAACATGTTCCATTAACA+AGG | 0.629726 | 1.4:+18575812 | MS.gene061047:CDS |
| TATAATGTACTCATCGTAGT+CGG | 0.631790 | 1.4:-18575656 | None:intergenic |
| GACGGAGAACAAAATAACAT+CGG | 0.680660 | 1.4:-18575626 | None:intergenic |
| AGCTCTTCGATATGGTAGAG+AGG | 0.683781 | 1.4:+18576032 | MS.gene061047:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCTTCTTCTTGAAATT+TGG | - | chr1.4:18575751-18575770 | None:intergenic | 20.0% |
| ! | AGAAACAAATAGAGTTCTTT+CGG | - | chr1.4:18575977-18575996 | None:intergenic | 25.0% |
| ! | AGTAACAATCACAAAAAATG+TGG | + | chr1.4:18575868-18575887 | MS.gene061047:CDS | 25.0% |
| ! | GACTTATCATTAACAATAGA+AGG | - | chr1.4:18576081-18576100 | None:intergenic | 25.0% |
| !! | AAGAACTCTATTTGTTTCTT+TGG | + | chr1.4:18575978-18575997 | MS.gene061047:CDS | 25.0% |
| !! | TTGTGATTGTTACTTATAAC+CGG | - | chr1.4:18575862-18575881 | None:intergenic | 25.0% |
| AGGTTATTGAATGGGAAAAA+TGG | + | chr1.4:18576052-18576071 | MS.gene061047:CDS | 30.0% | |
| AGTTGCTACAAACAAAATGT+TGG | + | chr1.4:18575690-18575709 | MS.gene061047:CDS | 30.0% | |
| CACAAAAAATGTGGTAACAA+TGG | + | chr1.4:18575877-18575896 | MS.gene061047:CDS | 30.0% | |
| GAGTACATTATAGACAGTAA+AGG | + | chr1.4:18575667-18575686 | MS.gene061047:CDS | 30.0% | |
| GGTTATTGAATGGGAAAAAT+GGG | + | chr1.4:18576053-18576072 | MS.gene061047:CDS | 30.0% | |
| TATAATGTACTCATCGTAGT+CGG | - | chr1.4:18575659-18575678 | None:intergenic | 30.0% | |
| ! | CTATTTGTTTCTTTGGTTAC+TGG | + | chr1.4:18575985-18576004 | MS.gene061047:CDS | 30.0% |
| ! | GAGCAATGATGTTTTCAAAT+AGG | - | chr1.4:18575726-18575745 | None:intergenic | 30.0% |
| !! | TAATGAGTTGGTATCTGTTA+GGG | - | chr1.4:18575549-18575568 | None:intergenic | 30.0% |
| AGAGTACATCCAAAAATCCT+TGG | + | chr1.4:18575568-18575587 | MS.gene061047:CDS | 35.0% | |
| ATGGTAGAGAGGTTATTGAA+TGG | + | chr1.4:18576043-18576062 | MS.gene061047:CDS | 35.0% | |
| GACGGAGAACAAAATAACAT+CGG | - | chr1.4:18575629-18575648 | None:intergenic | 35.0% | |
| GAGATTACTTCAACAACCAA+TGG | + | chr1.4:18576102-18576121 | MS.gene061047:CDS | 35.0% | |
| TCGAACATGTTCCATTAACA+AGG | + | chr1.4:18575812-18575831 | MS.gene061047:CDS | 35.0% | |
| TGGTAGAGAGGTTATTGAAT+GGG | + | chr1.4:18576044-18576063 | MS.gene061047:CDS | 35.0% | |
| TTCCTCAAGAAGATCGAATT+TGG | - | chr1.4:18575788-18575807 | None:intergenic | 35.0% | |
| TTGGATGTACTCTAATGAGT+TGG | - | chr1.4:18575561-18575580 | None:intergenic | 35.0% | |
| ! | AAAGCACTTTGAGCTAATGA+AGG | - | chr1.4:18575910-18575929 | None:intergenic | 35.0% |
| ! | CAGTTTTCTCCAAGGATTTT+TGG | - | chr1.4:18575580-18575599 | None:intergenic | 35.0% |
| !! | CTAATGAGTTGGTATCTGTT+AGG | - | chr1.4:18575550-18575569 | None:intergenic | 35.0% |
| !!! | CTGGTTTTGTGAATTCAATC+CGG | + | chr1.4:18575840-18575859 | MS.gene061047:CDS | 35.0% |
| AACCAGTCACACCTTGTTAA+TGG | - | chr1.4:18575826-18575845 | None:intergenic | 40.0% | |
| ATCGATGAAGCTCTTCGATA+TGG | + | chr1.4:18576024-18576043 | MS.gene061047:CDS | 40.0% | |
| CACCAAATTCGATCTTCTTG+AGG | + | chr1.4:18575783-18575802 | MS.gene061047:CDS | 40.0% | |
| TTCCATTAACAAGGTGTGAC+TGG | + | chr1.4:18575821-18575840 | MS.gene061047:CDS | 40.0% | |
| ! | TGAAGTACTTGCATCTCCAT+TGG | - | chr1.4:18576121-18576140 | None:intergenic | 40.0% |
| AGAGCTTCATCGATCGTATC+AGG | - | chr1.4:18576018-18576037 | None:intergenic | 45.0% | |
| AGCTCTTCGATATGGTAGAG+AGG | + | chr1.4:18576032-18576051 | MS.gene061047:CDS | 45.0% | |
| ATCGTAGTCGGTTAAGGAGA+CGG | - | chr1.4:18575647-18575666 | None:intergenic | 45.0% | |
| GTACTCATCGTAGTCGGTTA+AGG | - | chr1.4:18575653-18575672 | None:intergenic | 45.0% | |
| TCCTTGGAGAAAACTGCAAG+TGG | + | chr1.4:18575584-18575603 | MS.gene061047:CDS | 45.0% | |
| TGGAGAAAACTGCAAGTGGT+TGG | + | chr1.4:18575588-18575607 | MS.gene061047:CDS | 45.0% | |
| ! | ACCACTTGCAGTTTTCTCCA+AGG | - | chr1.4:18575588-18575607 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 18575541 | 18576143 | 18575541 | ID=MS.gene061047 |
| chr1.4 | mRNA | 18575541 | 18576143 | 18575541 | ID=MS.gene061047.t1;Parent=MS.gene061047 |
| chr1.4 | exon | 18575541 | 18576143 | 18575541 | ID=MS.gene061047.t1.exon1;Parent=MS.gene061047.t1 |
| chr1.4 | CDS | 18575541 | 18576143 | 18575541 | ID=cds.MS.gene061047.t1;Parent=MS.gene061047.t1 |
| Gene Sequence |
| Protein sequence |
