Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73994.t1 | RHN59934.1 | 97.6 | 368 | 9 | 0 | 1 | 368 | 72 | 439 | 1.60E-209 | 738.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73994.t1 | G7JUL4 | 97.6 | 368 | 9 | 0 | 1 | 368 | 4 | 371 | 1.2e-209 | 738.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056678 | MS.gene73994 | 0.82963 | 4.62E-55 | -1.69E-46 |
| MS.gene057717 | MS.gene73994 | 0.820099 | 8.20E-53 | -1.69E-46 |
| MS.gene058416 | MS.gene73994 | 0.822744 | 2.01E-53 | -1.69E-46 |
| MS.gene05926 | MS.gene73994 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene05960 | MS.gene73994 | 0.820853 | 5.51E-53 | -1.69E-46 |
| MS.gene059891 | MS.gene73994 | 0.801278 | 9.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene73994 | MS.gene015971 | PPI |
| MS.gene60267 | MS.gene73994 | PPI |
| MS.gene51556 | MS.gene73994 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73994.t1 | MTR_4g039720 | 97.554 | 368 | 9 | 0 | 1 | 368 | 4 | 371 | 0.0 | 742 |
| MS.gene73994.t1 | MTR_4g039740 | 91.576 | 368 | 30 | 1 | 1 | 368 | 1 | 367 | 0.0 | 700 |
| MS.gene73994.t1 | MTR_4g039680 | 89.807 | 363 | 37 | 0 | 6 | 368 | 5 | 367 | 0.0 | 684 |
| MS.gene73994.t1 | MTR_0045s0110 | 79.348 | 368 | 75 | 1 | 1 | 368 | 1 | 367 | 0.0 | 608 |
| MS.gene73994.t1 | MTR_1g011800 | 54.848 | 330 | 147 | 2 | 35 | 362 | 39 | 368 | 2.25e-131 | 381 |
| MS.gene73994.t1 | MTR_2g103170 | 49.102 | 334 | 164 | 2 | 35 | 362 | 28 | 361 | 2.05e-113 | 335 |
| MS.gene73994.t1 | MTR_2g019600 | 40.785 | 331 | 195 | 1 | 35 | 364 | 35 | 365 | 1.94e-91 | 280 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73994.t1 | AT3G08030 | 67.941 | 340 | 108 | 1 | 30 | 368 | 26 | 365 | 2.51e-178 | 499 |
| MS.gene73994.t1 | AT3G08030 | 69.350 | 323 | 98 | 1 | 47 | 368 | 1 | 323 | 1.51e-172 | 483 |
| MS.gene73994.t1 | AT2G41810 | 60.490 | 367 | 141 | 3 | 1 | 364 | 1 | 366 | 3.40e-160 | 454 |
| MS.gene73994.t1 | AT2G41800 | 62.952 | 332 | 122 | 1 | 35 | 365 | 36 | 367 | 1.10e-157 | 447 |
| MS.gene73994.t1 | AT5G11420 | 55.015 | 329 | 147 | 1 | 35 | 362 | 30 | 358 | 2.87e-134 | 388 |
| MS.gene73994.t1 | AT5G25460 | 52.991 | 351 | 163 | 2 | 14 | 362 | 11 | 361 | 3.15e-134 | 388 |
| MS.gene73994.t1 | AT4G32460 | 53.495 | 329 | 152 | 1 | 35 | 362 | 29 | 357 | 1.79e-131 | 381 |
| MS.gene73994.t1 | AT4G32460 | 53.495 | 329 | 152 | 1 | 35 | 362 | 29 | 357 | 1.79e-131 | 381 |
| MS.gene73994.t1 | AT4G32460 | 53.943 | 317 | 145 | 1 | 47 | 362 | 1 | 317 | 4.08e-129 | 373 |
| MS.gene73994.t1 | AT4G32460 | 53.943 | 317 | 145 | 1 | 47 | 362 | 1 | 317 | 4.08e-129 | 373 |
| MS.gene73994.t1 | AT1G80240 | 51.064 | 329 | 160 | 1 | 35 | 362 | 32 | 360 | 1.17e-117 | 346 |
| MS.gene73994.t1 | AT2G34510 | 41.369 | 336 | 191 | 2 | 35 | 364 | 43 | 378 | 2.00e-92 | 282 |
| MS.gene73994.t1 | AT1G29980 | 40.000 | 340 | 194 | 2 | 35 | 364 | 7 | 346 | 9.85e-92 | 280 |
| MS.gene73994.t1 | AT1G29980 | 40.000 | 340 | 194 | 2 | 35 | 364 | 43 | 382 | 3.00e-91 | 280 |
| MS.gene73994.t1 | AT2G34510 | 42.808 | 292 | 161 | 2 | 79 | 364 | 1 | 292 | 4.60e-83 | 256 |
| MS.gene73994.t1 | AT5G14150 | 26.842 | 380 | 231 | 13 | 10 | 368 | 8 | 361 | 1.45e-31 | 123 |
| MS.gene73994.t1 | AT5G14150 | 26.842 | 380 | 231 | 13 | 10 | 368 | 8 | 361 | 1.45e-31 | 123 |
Find 95 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGTTGTAGACTTTATT+TGG | 0.124368 | 4.1:+59362648 | None:intergenic |
| CATACAAAGATCAATGATTT+TGG | 0.185284 | 4.1:-59362444 | MS.gene73994:CDS |
| CCATTGGTTGTGTTGAAAAT+TGG | 0.197974 | 4.1:+59362849 | None:intergenic |
| CCCTACTTGTGGTCCACTTT+TGG | 0.234226 | 4.1:-59363287 | MS.gene73994:CDS |
| GACACGAGATCTTGTTGTTT+TGG | 0.273542 | 4.1:+59362813 | None:intergenic |
| CCCTTTCCAACAGATTTAAA+AGG | 0.279827 | 4.1:+59362543 | None:intergenic |
| ATTCAAGGCTAGTTCTTCTT+TGG | 0.280648 | 4.1:-59363347 | MS.gene73994:CDS |
| ACAATGTATGCTCTAATATT+AGG | 0.284249 | 4.1:-59363484 | MS.gene73994:CDS |
| CTTTGAATCAATGAATTTGA+TGG | 0.315424 | 4.1:+59362755 | None:intergenic |
| GCTGCTCAAAGTTCCCATTT+TGG | 0.321631 | 4.1:+59363707 | None:intergenic |
| CTTCTTGAATACCAGGGTTA+TGG | 0.328613 | 4.1:+59363311 | None:intergenic |
| TAGACCACTGATTTCCCATT+TGG | 0.331421 | 4.1:+59363630 | None:intergenic |
| CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4.1:-59363371 | MS.gene73994:CDS |
| AGCATTACCTTCTGGTGACC+TGG | 0.358200 | 4.1:+59364505 | None:intergenic |
| CATTGGTTGTGTTGAAAATT+GGG | 0.362858 | 4.1:+59362850 | None:intergenic |
| TGTACCAGGTTTGACTTTGA+TGG | 0.379755 | 4.1:+59363504 | None:intergenic |
| AAGCATTTCCAAGTGCCATT+TGG | 0.388861 | 4.1:-59362735 | MS.gene73994:CDS |
| GAAAACATTCACTTCCCAAA+TGG | 0.392506 | 4.1:-59363645 | MS.gene73994:CDS |
| TTCCAAGTGCCATTTGGAAA+TGG | 0.398171 | 4.1:-59362729 | MS.gene73994:CDS |
| GGAGCAGTGGAGCTTGTTGC+AGG | 0.402346 | 4.1:-59362708 | MS.gene73994:CDS |
| CAAACACTTTATAGCCTCAA+TGG | 0.405480 | 4.1:-59363388 | MS.gene73994:CDS |
| ACAATTGGAGATGGAAGAAA+TGG | 0.406784 | 4.1:-59362621 | MS.gene73994:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4.1:-59363362 | MS.gene73994:CDS |
| TCATTACCTCTTGTAGGCAT+TGG | 0.411606 | 4.1:+59363235 | None:intergenic |
| CTCCATTTCCAAATGGCACT+TGG | 0.418379 | 4.1:+59362727 | None:intergenic |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4.1:-59363424 | MS.gene73994:CDS |
| TATAATTCATTACCTCTTGT+AGG | 0.430080 | 4.1:+59363229 | None:intergenic |
| TTACCTCTTGTAGGCATTGG+AGG | 0.446146 | 4.1:+59363238 | None:intergenic |
| ATAAAGAAAACAAGACTCAT+TGG | 0.450674 | 4.1:-59363667 | MS.gene73994:CDS |
| AAAACATTCACTTCCCAAAT+GGG | 0.451562 | 4.1:-59363644 | MS.gene73994:CDS |
| AGACCACTGATTTCCCATTT+GGG | 0.455908 | 4.1:+59363631 | None:intergenic |
| TACAACATGAAATTCACAAT+TGG | 0.459725 | 4.1:-59362636 | MS.gene73994:CDS |
| AAGAACATGCCTCCAGGTTG+TGG | 0.465220 | 4.1:+59363586 | None:intergenic |
| CACATGGAGTCCATGCTGTT+AGG | 0.467146 | 4.1:-59363555 | MS.gene73994:CDS |
| ATCTTGAGCACAAGTTCTTG+TGG | 0.474361 | 4.1:+59363459 | None:intergenic |
| ATCTCTGGAGGGCCACAACC+TGG | 0.481621 | 4.1:-59363598 | MS.gene73994:CDS |
| TGGAGGAAGTATTACACCAT+TGG | 0.492140 | 4.1:+59362833 | None:intergenic |
| GGAGTCCATGCTGTTAGGCT+TGG | 0.496987 | 4.1:-59363550 | MS.gene73994:CDS |
| GGTCTAGTAGAGTATATCTC+TGG | 0.499841 | 4.1:-59363613 | MS.gene73994:CDS |
| GACTTTGATGGTTTGTGAGA+TGG | 0.505809 | 4.1:+59363516 | None:intergenic |
| AATGGACCCTCTTCAAAGCC+GGG | 0.507383 | 4.1:+59362873 | None:intergenic |
| ATGAAATTCACAATTGGAGA+TGG | 0.507745 | 4.1:-59362630 | MS.gene73994:CDS |
| GTAGGGTCTTCTTGAATACC+AGG | 0.510487 | 4.1:+59363304 | None:intergenic |
| TCGTGTCTCCACTCCCTGGT+TGG | 0.512556 | 4.1:-59362797 | MS.gene73994:CDS |
| TCCACTGCTCCATTTCCAAA+TGG | 0.515434 | 4.1:+59362720 | None:intergenic |
| ATAAGACAAGTTTAAGCGAC+GGG | 0.516863 | 4.1:+59362381 | None:intergenic |
| GCATTACCTTCTGGTGACCT+GGG | 0.517202 | 4.1:+59364506 | None:intergenic |
| TCAATAATCCAACCAGGGAG+TGG | 0.521330 | 4.1:+59362789 | None:intergenic |
| GAATGGACCCTCTTCAAAGC+CGG | 0.525213 | 4.1:+59362872 | None:intergenic |
| GCATGGACTCCATGTGACAC+TGG | 0.528190 | 4.1:+59363562 | None:intergenic |
| AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4.1:-59363370 | MS.gene73994:CDS |
| AGTGGAGCTTGTTGCAGGAA+GGG | 0.542398 | 4.1:-59362703 | MS.gene73994:CDS |
| GTTGTGTTGAAAATTGGGAA+TGG | 0.549484 | 4.1:+59362855 | None:intergenic |
| CAGTGGAGCTTGTTGCAGGA+AGG | 0.550407 | 4.1:-59362704 | MS.gene73994:CDS |
| ATTAGAGCATACATTGTACC+AGG | 0.551088 | 4.1:+59363490 | None:intergenic |
| CTATAACTTGATCAAGGACC+GGG | 0.555898 | 4.1:+59362409 | None:intergenic |
| CAAACCATCAAAGTCAAACC+TGG | 0.562139 | 4.1:-59363508 | MS.gene73994:CDS |
| ATAGCAACAGCATCCAAAAG+TGG | 0.564034 | 4.1:+59363274 | None:intergenic |
| ACTATAACTTGATCAAGGAC+CGG | 0.565852 | 4.1:+59362408 | None:intergenic |
| CATGGACTCCATGTGACACT+GGG | 0.566151 | 4.1:+59363563 | None:intergenic |
| ACTGGGAAGAACATGCCTCC+AGG | 0.567603 | 4.1:+59363580 | None:intergenic |
| GATGGAAGAAATGGATGTCA+TGG | 0.567802 | 4.1:-59362612 | MS.gene73994:CDS |
| GATCTCGTGTCTCCACTCCC+TGG | 0.577048 | 4.1:-59362801 | MS.gene73994:CDS |
| CCAAAAGTGGACCACAAGTA+GGG | 0.578033 | 4.1:+59363287 | None:intergenic |
| AAGAACCCCGGCTTTGAAGA+GGG | 0.580803 | 4.1:-59362879 | MS.gene73994:CDS |
| TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4.1:-59363372 | MS.gene73994:CDS |
| GGGATACTATAACTTGATCA+AGG | 0.584716 | 4.1:+59362403 | None:intergenic |
| AAAGAACCCCGGCTTTGAAG+AGG | 0.587801 | 4.1:-59362880 | MS.gene73994:CDS |
| TATCCTCCAATGCCTACAAG+AGG | 0.590468 | 4.1:-59363241 | MS.gene73994:intron |
| AAAGGAACTTCACCAGATTG+TGG | 0.591280 | 4.1:+59363412 | None:intergenic |
| GCTAATTTGGTAAAGAACCC+CGG | 0.592775 | 4.1:-59362891 | MS.gene73994:CDS |
| AGGCTATAAAGTGTTTGCAA+AGG | 0.598543 | 4.1:+59363394 | None:intergenic |
| CTAGTAGAGTATATCTCTGG+AGG | 0.605565 | 4.1:-59363610 | MS.gene73994:CDS |
| TCCAAAAGTGGACCACAAGT+AGG | 0.607049 | 4.1:+59363286 | None:intergenic |
| AAAGTTACATTCCATAACCC+TGG | 0.607670 | 4.1:-59363322 | MS.gene73994:CDS |
| CATTTCCAAGCCTAACAGCA+TGG | 0.608782 | 4.1:+59363545 | None:intergenic |
| TGGATGTCATGGATCAATGA+TGG | 0.615968 | 4.1:-59362601 | MS.gene73994:CDS |
| AGAGATTCAATAATCCAACC+AGG | 0.617420 | 4.1:+59362783 | None:intergenic |
| CATTTGCTAATGTTCACCCC+AGG | 0.618831 | 4.1:-59364523 | MS.gene73994:CDS |
| GCCATTTGGAAATGGAGCAG+TGG | 0.618905 | 4.1:-59362721 | MS.gene73994:CDS |
| AAGCAATAACATCACCATTG+AGG | 0.621145 | 4.1:+59363374 | None:intergenic |
| ATGTTCTTCCCAGTGTCACA+TGG | 0.627696 | 4.1:-59363571 | MS.gene73994:CDS |
| CATTACCTTCTGGTGACCTG+GGG | 0.628076 | 4.1:+59364507 | None:intergenic |
| AATAAGACAAGTTTAAGCGA+CGG | 0.632333 | 4.1:+59362380 | None:intergenic |
| ATGGACCCTCTTCAAAGCCG+GGG | 0.654789 | 4.1:+59362874 | None:intergenic |
| ATTCAAGAAGACCCTACTTG+TGG | 0.663898 | 4.1:-59363298 | MS.gene73994:CDS |
| CTTCCCAAATGGGAAATCAG+TGG | 0.668705 | 4.1:-59363634 | MS.gene73994:CDS |
| TAGTAGAGTATATCTCTGGA+GGG | 0.668916 | 4.1:-59363609 | MS.gene73994:CDS |
| TAGGGTCTTCTTGAATACCA+GGG | 0.668985 | 4.1:+59363305 | None:intergenic |
| GTTCACCCCAGGTCACCAGA+AGG | 0.680013 | 4.1:-59364512 | MS.gene73994:intron |
| TCTGGAGGGCCACAACCTGG+AGG | 0.701197 | 4.1:-59363595 | MS.gene73994:CDS |
| GGAACTTCACCAGATTGTGG+AGG | 0.701281 | 4.1:+59363415 | None:intergenic |
| GAGATTCAATAATCCAACCA+GGG | 0.703212 | 4.1:+59362784 | None:intergenic |
| AAGACAAGTTTAAGCGACGG+GGG | 0.710310 | 4.1:+59362383 | None:intergenic |
| TAAGACAAGTTTAAGCGACG+GGG | 0.727938 | 4.1:+59362382 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTATTAAATAACT+TGG | - | chr4.1:59363192-59363211 | MS.gene73994:intron | 10.0% |
| !!! | ATTTTCGAAAAAGTTAAAAA+TGG | + | chr4.1:59362757-59362776 | None:intergenic | 15.0% |
| !!! | TTGTTTTCTTTATGTATTTT+GGG | + | chr4.1:59363299-59363318 | None:intergenic | 15.0% |
| !! | AATAAAAAAATGTAGAGCAT+AGG | + | chr4.1:59363184-59363203 | None:intergenic | 20.0% |
| !! | ATATCATAGTTAATAGACTT+TGG | + | chr4.1:59363130-59363149 | None:intergenic | 20.0% |
| !! | TATCAAATTATTATCAGTGT+CGG | - | chr4.1:59363962-59363981 | MS.gene73994:intron | 20.0% |
| !! | TGTTTAATAAGACTAAAACA+TGG | - | chr4.1:59364047-59364066 | MS.gene73994:intron | 20.0% |
| !! | TTCAAAAATATGAAAAGCAA+TGG | - | chr4.1:59362789-59362808 | MS.gene73994:CDS | 20.0% |
| !!! | ATTTGAAACAAATATGTGTT+AGG | + | chr4.1:59362911-59362930 | None:intergenic | 20.0% |
| !!! | CTTGTTTTCTTTATGTATTT+TGG | + | chr4.1:59363300-59363319 | None:intergenic | 20.0% |
| !!! | TCATTTTTAAATTGCTAACA+TGG | - | chr4.1:59362632-59362651 | MS.gene73994:CDS | 20.0% |
| !!! | TTAAAGTTTTCTTCCAAAAT+GGG | - | chr4.1:59363253-59363272 | MS.gene73994:CDS | 20.0% |
| ! | ACAATGTATGCTCTAATATT+AGG | - | chr4.1:59363489-59363508 | MS.gene73994:CDS | 25.0% |
| ! | ATAAAGAAAACAAGACTCAT+TGG | - | chr4.1:59363306-59363325 | MS.gene73994:CDS | 25.0% |
| ! | CTTTGAATCAATGAATTTGA+TGG | + | chr4.1:59364221-59364240 | None:intergenic | 25.0% |
| ! | TACAACATGAAATTCACAAT+TGG | - | chr4.1:59364337-59364356 | MS.gene73994:intron | 25.0% |
| ! | TATAATTCATTACCTCTTGT+AGG | + | chr4.1:59363747-59363766 | None:intergenic | 25.0% |
| ! | TATATATTAAGATGTCACAC+TGG | + | chr4.1:59363018-59363037 | None:intergenic | 25.0% |
| ! | TGTTTCAATGTTTGAATCTA+AGG | - | chr4.1:59362556-59362575 | MS.gene73994:CDS | 25.0% |
| ! | TTCAGTGTAATTAAATGTGT+CGG | + | chr4.1:59363931-59363950 | None:intergenic | 25.0% |
| ! | TTCATGTTGTAGACTTTATT+TGG | + | chr4.1:59364328-59364347 | None:intergenic | 25.0% |
| !! | AAAGTTCCTTTTAAATCTGT+TGG | - | chr4.1:59364424-59364443 | MS.gene73994:intron | 25.0% |
| !! | CATACAAAGATCAATGATTT+TGG | - | chr4.1:59364529-59364548 | MS.gene73994:CDS | 25.0% |
| !! | CTTAAAGTTTTCTTCCAAAA+TGG | - | chr4.1:59363252-59363271 | MS.gene73994:CDS | 25.0% |
| !!! | CATTTTGGAAGAAAACTTTA+AGG | + | chr4.1:59363254-59363273 | None:intergenic | 25.0% |
| !!! | TTCTTTATGTATTTTGGGTT+TGG | + | chr4.1:59363294-59363313 | None:intergenic | 25.0% |
| AAAACATTCACTTCCCAAAT+GGG | - | chr4.1:59363329-59363348 | MS.gene73994:CDS | 30.0% | |
| ACTCTCTATATTACTTCCAT+AGG | - | chr4.1:59363780-59363799 | MS.gene73994:intron | 30.0% | |
| ATATAGAGAGTCTAGATTCA+TGG | + | chr4.1:59363771-59363790 | None:intergenic | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | - | chr4.1:59364343-59364362 | MS.gene73994:intron | 30.0% | |
| CTATGATATGCTTATTGAAG+TGG | - | chr4.1:59363141-59363160 | MS.gene73994:intron | 30.0% | |
| TAAAGAATTGTGATAGAGAG+AGG | - | chr4.1:59362674-59362693 | MS.gene73994:CDS | 30.0% | |
| TACCAAATTAGCTGCAAAAA+GGG | + | chr4.1:59364074-59364093 | None:intergenic | 30.0% | |
| TTACCAAATTAGCTGCAAAA+AGG | + | chr4.1:59364075-59364094 | None:intergenic | 30.0% | |
| ! | AAGGAAGAAAACCAACATTT+TGG | + | chr4.1:59363235-59363254 | None:intergenic | 30.0% |
| ! | AATGATTTTGGACATATGTG+CGG | - | chr4.1:59364541-59364560 | MS.gene73994:CDS | 30.0% |
| ! | CATTGGTTGTGTTGAAAATT+GGG | + | chr4.1:59364126-59364145 | None:intergenic | 30.0% |
| ! | CCTTTTAAATCTGTTGGAAA+GGG | - | chr4.1:59364430-59364449 | MS.gene73994:intron | 30.0% |
| ! | TCCTTTTAAATCTGTTGGAA+AGG | - | chr4.1:59364429-59364448 | MS.gene73994:intron | 30.0% |
| !! | ATAGTTTGTTTCGTTGAGAT+TGG | + | chr4.1:59363812-59363831 | None:intergenic | 30.0% |
| AAAGTTACATTCCATAACCC+TGG | - | chr4.1:59363651-59363670 | MS.gene73994:CDS | 35.0% | |
| AAATATGTGTTAGGTAGCGT+AGG | + | chr4.1:59362902-59362921 | None:intergenic | 35.0% | |
| AAGCAATAACATCACCATTG+AGG | + | chr4.1:59363602-59363621 | None:intergenic | 35.0% | |
| AATATGTGTTAGGTAGCGTA+GGG | + | chr4.1:59362901-59362920 | None:intergenic | 35.0% | |
| ACAATTGGAGATGGAAGAAA+TGG | - | chr4.1:59364352-59364371 | MS.gene73994:intron | 35.0% | |
| ACTATAACTTGATCAAGGAC+CGG | + | chr4.1:59364568-59364587 | None:intergenic | 35.0% | |
| AGAGATTCAATAATCCAACC+AGG | + | chr4.1:59364193-59364212 | None:intergenic | 35.0% | |
| ATTAGAGCATACATTGTACC+AGG | + | chr4.1:59363486-59363505 | None:intergenic | 35.0% | |
| CAAACACTTTATAGCCTCAA+TGG | - | chr4.1:59363585-59363604 | MS.gene73994:CDS | 35.0% | |
| CCCTTTCCAACAGATTTAAA+AGG | + | chr4.1:59364433-59364452 | None:intergenic | 35.0% | |
| CTGTAGATTGAATGTGTCTA+CGG | - | chr4.1:59362983-59363002 | MS.gene73994:intron | 35.0% | |
| GAAAACATTCACTTCCCAAA+TGG | - | chr4.1:59363328-59363347 | MS.gene73994:CDS | 35.0% | |
| GAAATGCTGATCCAAAATGT+TGG | - | chr4.1:59363221-59363240 | MS.gene73994:intron | 35.0% | |
| GAGATTCAATAATCCAACCA+GGG | + | chr4.1:59364192-59364211 | None:intergenic | 35.0% | |
| GGGATACTATAACTTGATCA+AGG | + | chr4.1:59364573-59364592 | None:intergenic | 35.0% | |
| GTTGTGTTGAAAATTGGGAA+TGG | + | chr4.1:59364121-59364140 | None:intergenic | 35.0% | |
| TAGTAGAGTATATCTCTGGA+GGG | - | chr4.1:59363364-59363383 | MS.gene73994:CDS | 35.0% | |
| ! | AATGGTGATGTTATTGCTTG+GGG | - | chr4.1:59363603-59363622 | MS.gene73994:CDS | 35.0% |
| ! | AGGCTATAAAGTGTTTGCAA+AGG | + | chr4.1:59363582-59363601 | None:intergenic | 35.0% |
| ! | ATTCAAGGCTAGTTCTTCTT+TGG | - | chr4.1:59363626-59363645 | MS.gene73994:CDS | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | - | chr4.1:59363602-59363621 | MS.gene73994:CDS | 35.0% |
| ! | CCAATTTTCAACACAACCAA+TGG | - | chr4.1:59364124-59364143 | MS.gene73994:intron | 35.0% |
| ! | CCATTGGTTGTGTTGAAAAT+TGG | + | chr4.1:59364127-59364146 | None:intergenic | 35.0% |
| ! | GTGTCGACATGTCAATATAA+TGG | - | chr4.1:59363078-59363097 | MS.gene73994:intron | 35.0% |
| ! | TATGTGATGATGCACAGATA+TGG | + | chr4.1:59364023-59364042 | None:intergenic | 35.0% |
| ! | TCAATGGTGATGTTATTGCT+TGG | - | chr4.1:59363601-59363620 | MS.gene73994:CDS | 35.0% |
| AAAGGAACTTCACCAGATTG+TGG | + | chr4.1:59363564-59363583 | None:intergenic | 40.0% | |
| ACACATTCAATCTACAGGTG+AGG | + | chr4.1:59362980-59362999 | None:intergenic | 40.0% | |
| ACAGATATGGACACGAACAA+CGG | + | chr4.1:59364010-59364029 | None:intergenic | 40.0% | |
| AGTAAGAGTAGAAGAGCCTA+CGG | - | chr4.1:59362875-59362894 | MS.gene73994:CDS | 40.0% | |
| ATAGCAACAGCATCCAAAAG+TGG | + | chr4.1:59363702-59363721 | None:intergenic | 40.0% | |
| ATCTTGAGCACAAGTTCTTG+TGG | + | chr4.1:59363517-59363536 | None:intergenic | 40.0% | |
| ATTCAAGAAGACCCTACTTG+TGG | - | chr4.1:59363675-59363694 | MS.gene73994:CDS | 40.0% | |
| CAAACCATCAAAGTCAAACC+TGG | - | chr4.1:59363465-59363484 | MS.gene73994:CDS | 40.0% | |
| CGTAGACACATTCAATCTAC+AGG | + | chr4.1:59362985-59363004 | None:intergenic | 40.0% | |
| CTAGTAGAGTATATCTCTGG+AGG | - | chr4.1:59363363-59363382 | MS.gene73994:CDS | 40.0% | |
| CTATAACTTGATCAAGGACC+GGG | + | chr4.1:59364567-59364586 | None:intergenic | 40.0% | |
| CTTCTTGAATACCAGGGTTA+TGG | + | chr4.1:59363665-59363684 | None:intergenic | 40.0% | |
| GATGGAAGAAATGGATGTCA+TGG | - | chr4.1:59364361-59364380 | MS.gene73994:intron | 40.0% | |
| GCTAATTTGGTAAAGAACCC+CGG | - | chr4.1:59364082-59364101 | MS.gene73994:intron | 40.0% | |
| GGTCTAGTAGAGTATATCTC+TGG | - | chr4.1:59363360-59363379 | MS.gene73994:CDS | 40.0% | |
| TAGAGTTGAGCATTACCTTC+TGG | + | chr4.1:59362479-59362498 | None:intergenic | 40.0% | |
| TAGGGTCTTCTTGAATACCA+GGG | + | chr4.1:59363671-59363690 | None:intergenic | 40.0% | |
| TCATTACCTCTTGTAGGCAT+TGG | + | chr4.1:59363741-59363760 | None:intergenic | 40.0% | |
| TGGATGTCATGGATCAATGA+TGG | - | chr4.1:59364372-59364391 | MS.gene73994:intron | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | - | chr4.1:59363611-59363630 | MS.gene73994:CDS | 40.0% | |
| TTAAGATGTCACACTGGTGT+CGG | + | chr4.1:59363012-59363031 | None:intergenic | 40.0% | |
| TTGAGATTGGACAAGACCTA+TGG | + | chr4.1:59363799-59363818 | None:intergenic | 40.0% | |
| ! | AAGCATTTCCAAGTGCCATT+TGG | - | chr4.1:59364238-59364257 | MS.gene73994:intron | 40.0% |
| ! | GACTTTGATGGTTTGTGAGA+TGG | + | chr4.1:59363460-59363479 | None:intergenic | 40.0% |
| ! | GTCCCTTTTTGCAGCTAATT+TGG | - | chr4.1:59364069-59364088 | MS.gene73994:intron | 40.0% |
| ! | TGTACCAGGTTTGACTTTGA+TGG | + | chr4.1:59363472-59363491 | None:intergenic | 40.0% |
| ! | TTGGAGCACTACCACATATA+CGG | + | chr4.1:59363111-59363130 | None:intergenic | 40.0% |
| !! | AGACCACTGATTTCCCATTT+GGG | + | chr4.1:59363345-59363364 | None:intergenic | 40.0% |
| !! | TAGACCACTGATTTCCCATT+TGG | + | chr4.1:59363346-59363365 | None:intergenic | 40.0% |
| !! | TGGAGGAAGTATTACACCAT+TGG | + | chr4.1:59364143-59364162 | None:intergenic | 40.0% |
| !! | TTCCAAGTGCCATTTGGAAA+TGG | - | chr4.1:59364244-59364263 | MS.gene73994:intron | 40.0% |
| !!! | ACGAGATCTTGTTGTTTTGG+AGG | + | chr4.1:59364160-59364179 | None:intergenic | 40.0% |
| !!! | GACACGAGATCTTGTTGTTT+TGG | + | chr4.1:59364163-59364182 | None:intergenic | 40.0% |
| ACTACCACATATACGGACAC+GGG | + | chr4.1:59363104-59363123 | None:intergenic | 45.0% | |
| ATGTTCTTCCCAGTGTCACA+TGG | - | chr4.1:59363402-59363421 | MS.gene73994:CDS | 45.0% | |
| CACTACCACATATACGGACA+CGG | + | chr4.1:59363105-59363124 | None:intergenic | 45.0% | |
| CATTTCCAAGCCTAACAGCA+TGG | + | chr4.1:59363431-59363450 | None:intergenic | 45.0% | |
| CCAAAAGTGGACCACAAGTA+GGG | + | chr4.1:59363689-59363708 | None:intergenic | 45.0% | |
| CTCCATTTCCAAATGGCACT+TGG | + | chr4.1:59364249-59364268 | None:intergenic | 45.0% | |
| CTTCCCAAATGGGAAATCAG+TGG | - | chr4.1:59363339-59363358 | MS.gene73994:CDS | 45.0% | |
| GTAGGGTCTTCTTGAATACC+AGG | + | chr4.1:59363672-59363691 | None:intergenic | 45.0% | |
| TATCCTCCAATGCCTACAAG+AGG | - | chr4.1:59363732-59363751 | MS.gene73994:intron | 45.0% | |
| TCAATAATCCAACCAGGGAG+TGG | + | chr4.1:59364187-59364206 | None:intergenic | 45.0% | |
| TCACAGACACTCATCAGAGT+AGG | - | chr4.1:59363876-59363895 | MS.gene73994:intron | 45.0% | |
| TCCAAAAGTGGACCACAAGT+AGG | + | chr4.1:59363690-59363709 | None:intergenic | 45.0% | |
| TCCACTGCTCCATTTCCAAA+TGG | + | chr4.1:59364256-59364275 | None:intergenic | 45.0% | |
| ! | CATTTGCTAATGTTCACCCC+AGG | - | chr4.1:59362450-59362469 | MS.gene73994:CDS | 45.0% |
| ! | GCTGCTCAAAGTTCCCATTT+TGG | + | chr4.1:59363269-59363288 | None:intergenic | 45.0% |
| !! | TTACCTCTTGTAGGCATTGG+AGG | + | chr4.1:59363738-59363757 | None:intergenic | 45.0% |
| AAGAACATGCCTCCAGGTTG+TGG | + | chr4.1:59363390-59363409 | None:intergenic | 50.0% | |
| AATGGACCCTCTTCAAAGCC+GGG | + | chr4.1:59364103-59364122 | None:intergenic | 50.0% | |
| AGCATTACCTTCTGGTGACC+TGG | + | chr4.1:59362471-59362490 | None:intergenic | 50.0% | |
| ATCTCAGTGCCTCCACAATC+TGG | - | chr4.1:59363549-59363568 | MS.gene73994:CDS | 50.0% | |
| ATGGACACGAACAACGGACA+CGG | + | chr4.1:59364004-59364023 | None:intergenic | 50.0% | |
| CACATGGAGTCCATGCTGTT+AGG | - | chr4.1:59363418-59363437 | MS.gene73994:CDS | 50.0% | |
| CATGGACTCCATGTGACACT+GGG | + | chr4.1:59363413-59363432 | None:intergenic | 50.0% | |
| CATTACCTTCTGGTGACCTG+GGG | + | chr4.1:59362469-59362488 | None:intergenic | 50.0% | |
| CTCTGATGAGTGTCTGTGAG+TGG | + | chr4.1:59363875-59363894 | None:intergenic | 50.0% | |
| GAATGGACCCTCTTCAAAGC+CGG | + | chr4.1:59364104-59364123 | None:intergenic | 50.0% | |
| GCATTACCTTCTGGTGACCT+GGG | + | chr4.1:59362470-59362489 | None:intergenic | 50.0% | |
| GCCATTTGGAAATGGAGCAG+TGG | - | chr4.1:59364252-59364271 | MS.gene73994:intron | 50.0% | |
| GGAACTTCACCAGATTGTGG+AGG | + | chr4.1:59363561-59363580 | None:intergenic | 50.0% | |
| ! | CCCTACTTGTGGTCCACTTT+TGG | - | chr4.1:59363686-59363705 | MS.gene73994:CDS | 50.0% |
| ! | TTTTGGACATATGTGCGGCC+CGG | - | chr4.1:59364546-59364565 | MS.gene73994:CDS | 50.0% |
| !! | AAAGAACCCCGGCTTTGAAG+AGG | - | chr4.1:59364093-59364112 | MS.gene73994:intron | 50.0% |
| !! | AAGAACCCCGGCTTTGAAGA+GGG | - | chr4.1:59364094-59364113 | MS.gene73994:intron | 50.0% |
| !! | AGTGGAGCTTGTTGCAGGAA+GGG | - | chr4.1:59364270-59364289 | MS.gene73994:intron | 50.0% |
| ACTGGGAAGAACATGCCTCC+AGG | + | chr4.1:59363396-59363415 | None:intergenic | 55.0% | |
| ATGGACCCTCTTCAAAGCCG+GGG | + | chr4.1:59364102-59364121 | None:intergenic | 55.0% | |
| ATGGCCCGTGTCCGTATATG+TGG | - | chr4.1:59363097-59363116 | MS.gene73994:intron | 55.0% | |
| GAGTAGGCGTATCCCAGTGT+CGG | - | chr4.1:59363892-59363911 | MS.gene73994:intron | 55.0% | |
| GCATGGACTCCATGTGACAC+TGG | + | chr4.1:59363414-59363433 | None:intergenic | 55.0% | |
| GGAGTCCATGCTGTTAGGCT+TGG | - | chr4.1:59363423-59363442 | MS.gene73994:CDS | 55.0% | |
| GTTCTGACGTGTCCGACACT+GGG | + | chr4.1:59363907-59363926 | None:intergenic | 55.0% | |
| TGTTCTGACGTGTCCGACAC+TGG | + | chr4.1:59363908-59363927 | None:intergenic | 55.0% | |
| !! | CAGTGGAGCTTGTTGCAGGA+AGG | - | chr4.1:59364269-59364288 | MS.gene73994:intron | 55.0% |
| GATCTCGTGTCTCCACTCCC+TGG | - | chr4.1:59364172-59364191 | MS.gene73994:intron | 60.0% | |
| GTTAGGTAGCGTAGGGCCGT+AGG | + | chr4.1:59362894-59362913 | None:intergenic | 60.0% | |
| GTTCACCCCAGGTCACCAGA+AGG | - | chr4.1:59362461-59362480 | MS.gene73994:CDS | 60.0% | |
| TCGTGTCTCCACTCCCTGGT+TGG | - | chr4.1:59364176-59364195 | MS.gene73994:intron | 60.0% | |
| ! | ATCTCTGGAGGGCCACAACC+TGG | - | chr4.1:59363375-59363394 | MS.gene73994:CDS | 60.0% |
| !! | GGAGCAGTGGAGCTTGTTGC+AGG | - | chr4.1:59364265-59364284 | MS.gene73994:intron | 60.0% |
| TCTGGAGGGCCACAACCTGG+AGG | - | chr4.1:59363378-59363397 | MS.gene73994:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 59362392 | 59364603 | 59362392 | ID=MS.gene73994 |
| chr4.1 | mRNA | 59362392 | 59364603 | 59362392 | ID=MS.gene73994.t1;Parent=MS.gene73994 |
| chr4.1 | exon | 59364513 | 59364603 | 59364513 | ID=MS.gene73994.t1.exon1;Parent=MS.gene73994.t1 |
| chr4.1 | CDS | 59364513 | 59364603 | 59364513 | ID=cds.MS.gene73994.t1;Parent=MS.gene73994.t1 |
| chr4.1 | exon | 59363242 | 59363736 | 59363242 | ID=MS.gene73994.t1.exon2;Parent=MS.gene73994.t1 |
| chr4.1 | CDS | 59363242 | 59363736 | 59363242 | ID=cds.MS.gene73994.t1;Parent=MS.gene73994.t1 |
| chr4.1 | exon | 59362392 | 59362912 | 59362392 | ID=MS.gene73994.t1.exon3;Parent=MS.gene73994.t1 |
| chr4.1 | CDS | 59362392 | 59362912 | 59362392 | ID=cds.MS.gene73994.t1;Parent=MS.gene73994.t1 |
| Gene Sequence |
| Protein sequence |
