Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74366.t1 | XP_003628192.1 | 89 | 155 | 16 | 1 | 1 | 155 | 1 | 154 | 1.30E-75 | 292.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74366.t1 | Q9SSK5 | 36.0 | 150 | 93 | 3 | 3 | 150 | 7 | 155 | 5.3e-22 | 105.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74366.t1 | G7L7S7 | 89.0 | 155 | 16 | 1 | 1 | 155 | 1 | 154 | 9.2e-76 | 292.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051718 | MS.gene74366 | 0.814382 | 1.58E-51 | -1.69E-46 |
| MS.gene058382 | MS.gene74366 | 0.869223 | 3.64E-66 | -1.69E-46 |
| MS.gene058386 | MS.gene74366 | 0.846016 | 2.83E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74366.t1 | MTR_8g045400 | 89.032 | 155 | 16 | 1 | 1 | 155 | 1 | 154 | 7.80e-99 | 281 |
| MS.gene74366.t1 | MTR_8g045520 | 85.161 | 155 | 23 | 0 | 1 | 155 | 1 | 155 | 1.09e-94 | 271 |
| MS.gene74366.t1 | MTR_8g045490 | 80.921 | 152 | 29 | 0 | 1 | 152 | 1 | 152 | 5.18e-91 | 261 |
| MS.gene74366.t1 | MTR_8g045695 | 76.774 | 155 | 35 | 1 | 1 | 155 | 1 | 154 | 3.46e-86 | 249 |
| MS.gene74366.t1 | MTR_8g045570 | 74.342 | 152 | 39 | 0 | 1 | 152 | 1 | 152 | 1.26e-82 | 240 |
| MS.gene74366.t1 | MTR_8g045735 | 72.258 | 155 | 42 | 1 | 1 | 155 | 1 | 154 | 3.78e-82 | 239 |
| MS.gene74366.t1 | MTR_8g045665 | 74.194 | 155 | 39 | 1 | 1 | 155 | 1 | 154 | 2.16e-81 | 237 |
| MS.gene74366.t1 | MTR_8g045300 | 71.613 | 155 | 44 | 0 | 1 | 155 | 1 | 155 | 5.13e-81 | 236 |
| MS.gene74366.t1 | MTR_8g045555 | 72.368 | 152 | 42 | 0 | 1 | 152 | 1 | 152 | 4.06e-80 | 234 |
| MS.gene74366.t1 | MTR_8g045640 | 71.613 | 155 | 43 | 1 | 1 | 155 | 1 | 154 | 1.31e-78 | 230 |
| MS.gene74366.t1 | MTR_8g045560 | 70.968 | 155 | 44 | 1 | 1 | 155 | 1 | 154 | 1.11e-77 | 228 |
| MS.gene74366.t1 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 1 | 151 | 1 | 152 | 2.49e-38 | 128 |
| MS.gene74366.t1 | MTR_1g030810 | 43.137 | 153 | 84 | 2 | 1 | 151 | 1 | 152 | 2.80e-38 | 127 |
| MS.gene74366.t1 | MTR_1g030840 | 38.462 | 156 | 88 | 4 | 1 | 149 | 1 | 155 | 4.16e-29 | 105 |
| MS.gene74366.t1 | MTR_8g012550 | 35.172 | 145 | 91 | 3 | 6 | 149 | 8 | 150 | 1.11e-27 | 100 |
| MS.gene74366.t1 | MTR_1g031640 | 36.486 | 148 | 85 | 5 | 7 | 152 | 7 | 147 | 1.83e-23 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74366.t1 | AT1G70890 | 36.000 | 150 | 93 | 3 | 3 | 150 | 7 | 155 | 5.75e-26 | 96.7 |
| MS.gene74366.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 6.48e-26 | 97.1 |
| MS.gene74366.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 6.48e-26 | 97.1 |
| MS.gene74366.t1 | AT1G70840 | 33.333 | 150 | 97 | 3 | 3 | 150 | 20 | 168 | 2.16e-24 | 93.2 |
| MS.gene74366.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 3.81e-24 | 92.4 |
| MS.gene74366.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 8.44e-24 | 92.4 |
| MS.gene74366.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 2.62e-23 | 92.0 |
| MS.gene74366.t1 | AT1G70830 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 7.72e-23 | 92.4 |
| MS.gene74366.t1 | AT1G70830 | 33.333 | 150 | 97 | 3 | 3 | 150 | 184 | 332 | 2.39e-21 | 88.6 |
| MS.gene74366.t1 | AT5G28000 | 31.333 | 150 | 100 | 3 | 3 | 150 | 13 | 161 | 2.11e-22 | 87.8 |
| MS.gene74366.t1 | AT1G70850 | 32.450 | 151 | 99 | 3 | 3 | 151 | 9 | 158 | 5.62e-22 | 88.6 |
| MS.gene74366.t1 | AT1G70830 | 33.333 | 150 | 97 | 3 | 3 | 150 | 137 | 285 | 7.84e-22 | 89.0 |
| MS.gene74366.t1 | AT1G70830 | 30.108 | 93 | 64 | 1 | 59 | 150 | 31 | 123 | 3.05e-11 | 60.1 |
| MS.gene74366.t1 | AT1G70850 | 32.450 | 151 | 99 | 3 | 3 | 151 | 9 | 158 | 1.69e-21 | 88.6 |
| MS.gene74366.t1 | AT1G70850 | 32.857 | 140 | 91 | 3 | 13 | 150 | 175 | 313 | 5.64e-20 | 84.3 |
| MS.gene74366.t1 | AT1G70850 | 32.450 | 151 | 99 | 3 | 3 | 151 | 9 | 158 | 1.69e-21 | 88.6 |
| MS.gene74366.t1 | AT1G70850 | 32.857 | 140 | 91 | 3 | 13 | 150 | 175 | 313 | 5.64e-20 | 84.3 |
| MS.gene74366.t1 | AT1G23120 | 29.333 | 150 | 101 | 3 | 1 | 150 | 1 | 145 | 4.78e-21 | 84.0 |
| MS.gene74366.t1 | AT1G23120 | 29.861 | 144 | 96 | 3 | 7 | 150 | 57 | 195 | 1.60e-20 | 84.0 |
| MS.gene74366.t1 | AT1G70870 | 42.708 | 96 | 54 | 1 | 56 | 151 | 44 | 138 | 1.76e-20 | 82.0 |
| MS.gene74366.t1 | AT1G23130 | 27.517 | 149 | 106 | 2 | 3 | 150 | 10 | 157 | 2.41e-19 | 79.7 |
| MS.gene74366.t1 | AT1G70880 | 30.464 | 151 | 102 | 3 | 3 | 151 | 8 | 157 | 3.22e-19 | 79.3 |
| MS.gene74366.t1 | AT1G14930 | 30.323 | 155 | 105 | 3 | 1 | 154 | 1 | 153 | 6.47e-19 | 78.6 |
| MS.gene74366.t1 | AT4G23670 | 32.680 | 153 | 100 | 3 | 1 | 152 | 1 | 151 | 9.74e-19 | 77.8 |
| MS.gene74366.t1 | AT2G01520 | 29.412 | 153 | 105 | 3 | 1 | 152 | 1 | 151 | 1.80e-17 | 74.7 |
| MS.gene74366.t1 | AT1G24020 | 31.613 | 155 | 104 | 2 | 1 | 154 | 1 | 154 | 5.20e-17 | 73.6 |
| MS.gene74366.t1 | AT1G24020 | 31.613 | 155 | 104 | 2 | 1 | 154 | 1 | 154 | 5.20e-17 | 73.6 |
| MS.gene74366.t1 | AT4G14060 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 1.28e-16 | 72.4 |
| MS.gene74366.t1 | AT2G01530 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 2.30e-16 | 71.6 |
| MS.gene74366.t1 | AT1G35260 | 28.859 | 149 | 96 | 4 | 7 | 150 | 6 | 149 | 3.92e-16 | 71.2 |
| MS.gene74366.t1 | AT1G14940 | 28.387 | 155 | 108 | 3 | 1 | 154 | 1 | 153 | 1.51e-15 | 69.7 |
| MS.gene74366.t1 | AT4G23680 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 2.15e-15 | 69.3 |
| MS.gene74366.t1 | AT1G14950 | 27.742 | 155 | 109 | 3 | 1 | 154 | 1 | 153 | 3.44e-14 | 66.2 |
| MS.gene74366.t1 | AT1G30990 | 30.464 | 151 | 101 | 4 | 1 | 150 | 1 | 148 | 4.04e-14 | 65.9 |
| MS.gene74366.t1 | AT1G35310 | 25.899 | 139 | 100 | 3 | 13 | 150 | 12 | 148 | 4.18e-13 | 63.2 |
| MS.gene74366.t1 | AT3G26450 | 27.922 | 154 | 107 | 4 | 1 | 152 | 1 | 152 | 5.54e-13 | 63.2 |
| MS.gene74366.t1 | AT1G14960 | 27.632 | 152 | 107 | 3 | 1 | 151 | 1 | 150 | 2.74e-12 | 61.2 |
| MS.gene74366.t1 | AT3G26460 | 29.487 | 156 | 102 | 5 | 1 | 152 | 1 | 152 | 3.96e-12 | 60.8 |
Find 31 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8.4:-55920409 | None:intergenic |
| AATGACTGGATGGACTTATT+AGG | 0.327024 | 8.4:+55922528 | MS.gene74366:CDS |
| ATGGCACTGCTGCTGCAAAA+TGG | 0.357955 | 8.4:+55922463 | MS.gene74366:CDS |
| AAGTTCAGTGCTAAGTTTAC+CGG | 0.359188 | 8.4:-55920298 | None:intergenic |
| AAAGGTACTTACAAGCTCTT+TGG | 0.360361 | 8.4:+55922378 | MS.gene74366:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.4:-55922440 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.407726 | 8.4:+55922437 | MS.gene74366:CDS |
| AATAAGTCCATCCAGTCATT+TGG | 0.418884 | 8.4:-55922525 | None:intergenic |
| ATCCTTGAAGTAATTGATAA+GGG | 0.464204 | 8.4:+55922438 | MS.gene74366:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.4:+55920453 | MS.gene74366:CDS |
| GGTAAACTTAGCACTGAACT+TGG | 0.479484 | 8.4:+55920300 | MS.gene74366:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8.4:+55920412 | MS.gene74366:CDS |
| GGTACTTACAAGCTCTTTGG+TGG | 0.496480 | 8.4:+55922381 | MS.gene74366:CDS |
| AGATATTGATGAGCACTATA+AGG | 0.500590 | 8.4:+55922404 | MS.gene74366:CDS |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 8.4:+55920428 | MS.gene74366:CDS |
| CATTCAGAAATGGTGCTCGC+CGG | 0.538740 | 8.4:+55920279 | None:intergenic |
| TGGCATCACAATAGATGGTA+AGG | 0.541784 | 8.4:+55922308 | MS.gene74366:intron |
| ATATTGACCCTCCAAATGAC+TGG | 0.541941 | 8.4:+55922514 | MS.gene74366:CDS |
| ATTGATGAACAAAACAAGAA+AGG | 0.549109 | 8.4:+55922360 | MS.gene74366:CDS |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.4:+55922444 | MS.gene74366:CDS |
| AAGTCCATCCAGTCATTTGG+AGG | 0.557287 | 8.4:-55922522 | None:intergenic |
| TGACCCTCCAAATGACTGGA+TGG | 0.566937 | 8.4:+55922518 | MS.gene74366:CDS |
| GTTGATGCTCATCTTGTCAA+AGG | 0.591021 | 8.4:+55922567 | MS.gene74366:CDS |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 8.4:+55920402 | MS.gene74366:CDS |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8.4:+55920439 | MS.gene74366:CDS |
| GTAAACTTAGCACTGAACTT+GGG | 0.614642 | 8.4:+55920301 | MS.gene74366:CDS |
| TAGTTTGAAGAACTTGTCGA+CGG | 0.618944 | 8.4:-55920334 | None:intergenic |
| AGTTTGAAGAACTTGTCGAC+GGG | 0.627390 | 8.4:-55920333 | None:intergenic |
| GGTACACATATGTCATGAGA+AGG | 0.636229 | 8.4:+55922329 | MS.gene74366:CDS |
| AGTCCATCCAGTCATTTGGA+GGG | 0.660042 | 8.4:-55922521 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.667026 | 8.4:+55922491 | MS.gene74366:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATCTTCTTAATAATT+TGG | - | chr8.4:55921796-55921815 | None:intergenic | 10.0% |
| !! | AAAAAATGTATCTATTGTAT+CGG | - | chr8.4:55921076-55921095 | None:intergenic | 15.0% |
| !! | ATAGAGTTATGAAAAATATA+TGG | - | chr8.4:55922252-55922271 | None:intergenic | 15.0% |
| !! | ATCTAATAAAAAACCTATAA+GGG | + | chr8.4:55920853-55920872 | MS.gene74366:intron | 15.0% |
| !! | CATAATCTTCTTATAAAATA+TGG | - | chr8.4:55920570-55920589 | None:intergenic | 15.0% |
| !! | TAAGAATAAGAAATAAAAAG+TGG | - | chr8.4:55921491-55921510 | None:intergenic | 15.0% |
| !!! | ACAATAGATACATTTTTTTA+AGG | + | chr8.4:55921078-55921097 | MS.gene74366:intron | 15.0% |
| !!! | ATACACTGTTTTAATTTAAT+GGG | + | chr8.4:55922272-55922291 | MS.gene74366:intron | 15.0% |
| !!! | CAATAGATACATTTTTTTAA+GGG | + | chr8.4:55921079-55921098 | MS.gene74366:intron | 15.0% |
| !!! | TAAGCAAAAAACTATATTTT+AGG | + | chr8.4:55921156-55921175 | MS.gene74366:intron | 15.0% |
| !!! | TATACACTGTTTTAATTTAA+TGG | + | chr8.4:55922271-55922290 | MS.gene74366:intron | 15.0% |
| !! | AATAAGAAATAAAAAGTGGT+GGG | - | chr8.4:55921487-55921506 | None:intergenic | 20.0% |
| !! | ACAATATATAGAAAAAGTGA+TGG | + | chr8.4:55920733-55920752 | MS.gene74366:intron | 20.0% |
| !! | CATAAATAAACAAGATGATA+TGG | - | chr8.4:55920511-55920530 | None:intergenic | 20.0% |
| !! | CATCTAATAAAAAACCTATA+AGG | + | chr8.4:55920852-55920871 | MS.gene74366:intron | 20.0% |
| !! | TATTAAGAAGATAAAAATCC+AGG | + | chr8.4:55921799-55921818 | MS.gene74366:intron | 20.0% |
| !! | TATTGTGTAATTGATTGATT+TGG | - | chr8.4:55920719-55920738 | None:intergenic | 20.0% |
| !! | TGAAAAACTTTATCATCTTT+AGG | - | chr8.4:55920594-55920613 | None:intergenic | 20.0% |
| !! | TGCTCTTATTAATTGAATTA+AGG | - | chr8.4:55920541-55920560 | None:intergenic | 20.0% |
| !!! | AGAAAAAAAATCACGAATTT+TGG | + | chr8.4:55921726-55921745 | MS.gene74366:intron | 20.0% |
| !!! | TATAGGTTTTTTATTAGATG+AGG | - | chr8.4:55920852-55920871 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATAATAGTGAC+CGG | + | chr8.4:55921255-55921274 | MS.gene74366:intron | 20.0% |
| ! | AAATAAACAAGATGATATGG+AGG | - | chr8.4:55920508-55920527 | None:intergenic | 25.0% |
| ! | AATAAACAAGATGATATGGA+GGG | - | chr8.4:55920507-55920526 | None:intergenic | 25.0% |
| ! | AGACTAAAACTTCAAAAGAA+AGG | + | chr8.4:55921623-55921642 | MS.gene74366:intron | 25.0% |
| ! | ATAAGAAATAAAAAGTGGTG+GGG | - | chr8.4:55921486-55921505 | None:intergenic | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.4:55922438-55922457 | MS.gene74366:CDS | 25.0% |
| ! | ATGTAAAAAACCATTGTACA+TGG | - | chr8.4:55921348-55921367 | None:intergenic | 25.0% |
| ! | ATTGATGAACAAAACAAGAA+AGG | + | chr8.4:55922360-55922379 | MS.gene74366:CDS | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | + | chr8.4:55921181-55921200 | MS.gene74366:intron | 25.0% |
| ! | GAATAAGAAATAAAAAGTGG+TGG | - | chr8.4:55921488-55921507 | None:intergenic | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | + | chr8.4:55922491-55922510 | MS.gene74366:CDS | 25.0% |
| ! | TTAAGAGAGAAAAAATGATG+TGG | - | chr8.4:55921411-55921430 | None:intergenic | 25.0% |
| ! | TTTCTCTATAAATAGAGACT+TGG | - | chr8.4:55921711-55921730 | None:intergenic | 25.0% |
| !! | ATTTTTGATGAACAACTGAA+AGG | + | chr8.4:55920822-55920841 | MS.gene74366:intron | 25.0% |
| !! | TTTTTGATGAACAACTGAAA+GGG | + | chr8.4:55920823-55920842 | MS.gene74366:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr8.4:55921146-55921165 | None:intergenic | 25.0% |
| !!! | TAGAAAAAGTGATGGATTTA+TGG | + | chr8.4:55920741-55920760 | MS.gene74366:intron | 25.0% |
| AGATATTGATGAGCACTATA+AGG | + | chr8.4:55922404-55922423 | MS.gene74366:CDS | 30.0% | |
| ATTGAGAGTTATTGAACCAT+TGG | - | chr8.4:55922040-55922059 | None:intergenic | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr8.4:55922437-55922456 | MS.gene74366:CDS | 30.0% | |
| CATTCATTTAATGATGCACA+TGG | - | chr8.4:55921220-55921239 | None:intergenic | 30.0% | |
| TGGAGTGGTAAAAATTGAAT+GGG | - | chr8.4:55921441-55921460 | None:intergenic | 30.0% | |
| TTGGAGTGGTAAAAATTGAA+TGG | - | chr8.4:55921442-55921461 | None:intergenic | 30.0% | |
| ! | GAGATACATGATTGACTTTA+TGG | + | chr8.4:55921294-55921313 | MS.gene74366:intron | 30.0% |
| ! | TAATGGGTATTAATTTCCCT+TGG | + | chr8.4:55922288-55922307 | MS.gene74366:intron | 30.0% |
| ! | TTCAATTTTTACCACTCCAA+TGG | + | chr8.4:55921442-55921461 | MS.gene74366:intron | 30.0% |
| ! | TTTTGCTTATATTAGTGACC+GGG | - | chr8.4:55921145-55921164 | None:intergenic | 30.0% |
| AAAAAATGATGTGGAGGGTT+GGG | - | chr8.4:55921402-55921421 | None:intergenic | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.4:55920453-55920472 | MS.gene74366:CDS | 35.0% | |
| AAACCATTGTACATGGAAGT+CGG | - | chr8.4:55921341-55921360 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.4:55920412-55920431 | MS.gene74366:CDS | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | + | chr8.4:55920953-55920972 | MS.gene74366:intron | 35.0% | |
| AAGTTCAGTGCTAAGTTTAC+CGG | - | chr8.4:55920301-55920320 | None:intergenic | 35.0% | |
| AATAAGTCCATCCAGTCATT+TGG | - | chr8.4:55922528-55922547 | None:intergenic | 35.0% | |
| ACTCTCAATACCCTTTCAAT+AGG | + | chr8.4:55922051-55922070 | MS.gene74366:intron | 35.0% | |
| AGAGAGAAAAAATGATGTGG+AGG | - | chr8.4:55921408-55921427 | None:intergenic | 35.0% | |
| AGTGTTTCTCAATCCCTTAT+AGG | - | chr8.4:55920869-55920888 | None:intergenic | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.4:55920412-55920431 | None:intergenic | 35.0% | |
| CAAGCTTATTGAACATGATG+TGG | - | chr8.4:55922014-55922033 | None:intergenic | 35.0% | |
| CACAAAAAAAAGACACTGCA+TGG | + | chr8.4:55920629-55920648 | MS.gene74366:intron | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr8.4:55922443-55922462 | None:intergenic | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | + | chr8.4:55920402-55920421 | MS.gene74366:CDS | 35.0% | |
| CTCTCAATACCCTTTCAATA+GGG | + | chr8.4:55922052-55922071 | MS.gene74366:intron | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr8.4:55922444-55922463 | MS.gene74366:CDS | 35.0% | |
| GAGACTTGGATCATTTGATT+TGG | - | chr8.4:55921697-55921716 | None:intergenic | 35.0% | |
| GAGAGAAAAAATGATGTGGA+GGG | - | chr8.4:55921407-55921426 | None:intergenic | 35.0% | |
| TACTTATAATAGTGACCGGA+TGG | + | chr8.4:55921259-55921278 | MS.gene74366:intron | 35.0% | |
| TAGTTTGAAGAACTTGTCGA+CGG | - | chr8.4:55920337-55920356 | None:intergenic | 35.0% | |
| TCGTTTGAGCCAGTAAAATT+TGG | + | chr8.4:55921929-55921948 | MS.gene74366:intron | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | + | chr8.4:55921017-55921036 | MS.gene74366:intron | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | - | chr8.4:55921036-55921017 | None:intergenic | 35.0% | |
| TTGAATGAAAACCATTGGAG+TGG | - | chr8.4:55921456-55921475 | None:intergenic | 35.0% | |
| TTTGCTTATATTAGTGACCG+GGG | - | chr8.4:55921144-55921163 | None:intergenic | 35.0% | |
| ! | AAATAAAAAGTGGTGGGGTA+GGG | - | chr8.4:55921481-55921500 | None:intergenic | 35.0% |
| ! | AATGACTGGATGGACTTATT+AGG | + | chr8.4:55922528-55922547 | MS.gene74366:CDS | 35.0% |
| ! | CCACACAAGATTTTCTCTAA+GGG | + | chr8.4:55921047-55921066 | MS.gene74366:intron | 35.0% |
| ! | GTAAACTTAGCACTGAACTT+GGG | + | chr8.4:55920301-55920320 | MS.gene74366:CDS | 35.0% |
| ! | TCCACACAAGATTTTCTCTA+AGG | + | chr8.4:55921046-55921065 | MS.gene74366:intron | 35.0% |
| ! | TTCAATAAGCTTGCTTCCAA+TGG | + | chr8.4:55922021-55922040 | MS.gene74366:intron | 35.0% |
| !! | AAAGGTACTTACAAGCTCTT+TGG | + | chr8.4:55922378-55922397 | MS.gene74366:CDS | 35.0% |
| !! | ATTGAAAAAGTGGGTGTTGA+AGG | - | chr8.4:55921378-55921397 | None:intergenic | 35.0% |
| !! | TTGATAAAAGCATTGACACG+TGG | - | chr8.4:55921842-55921861 | None:intergenic | 35.0% |
| ACCATCTATTGTGATGCCAA+GGG | - | chr8.4:55922307-55922326 | None:intergenic | 40.0% | |
| AGGGTTGGGAATTGAAAAAG+TGG | - | chr8.4:55921388-55921407 | None:intergenic | 40.0% | |
| AGTTTGAAGAACTTGTCGAC+GGG | - | chr8.4:55920336-55920355 | None:intergenic | 40.0% | |
| ATATTGACCCTCCAAATGAC+TGG | + | chr8.4:55922514-55922533 | MS.gene74366:CDS | 40.0% | |
| ATTCCGACTTCCATGTACAA+TGG | + | chr8.4:55921335-55921354 | MS.gene74366:intron | 40.0% | |
| CAAACCAAAATTCTTGGTCC+TGG | + | chr8.4:55921023-55921042 | MS.gene74366:intron | 40.0% | |
| CAAACCAAAATTCTTGGTCC+TGG | - | chr8.4:55921042-55921023 | None:intergenic | 40.0% | |
| CCCTTAGAGAAAATCTTGTG+TGG | - | chr8.4:55921050-55921069 | None:intergenic | 40.0% | |
| CCTAAACTAGAGATGTGAGA+AGG | + | chr8.4:55922120-55922139 | MS.gene74366:intron | 40.0% | |
| CTGTAATTGACCATCTCCAA+TGG | - | chr8.4:55922078-55922097 | None:intergenic | 40.0% | |
| GAAAAAATGATGTGGAGGGT+TGG | - | chr8.4:55921403-55921422 | None:intergenic | 40.0% | |
| GCTTATTGAACATGATGTGG+AGG | - | chr8.4:55922011-55922030 | None:intergenic | 40.0% | |
| GGGTTGGGAATTGAAAAAGT+GGG | - | chr8.4:55921387-55921406 | None:intergenic | 40.0% | |
| GGTACACATATGTCATGAGA+AGG | + | chr8.4:55922329-55922348 | MS.gene74366:CDS | 40.0% | |
| GTTGATGCTCATCTTGTCAA+AGG | + | chr8.4:55922567-55922586 | MS.gene74366:CDS | 40.0% | |
| TAAATGCTAAATACACCCCC+CGG | + | chr8.4:55921124-55921143 | MS.gene74366:intron | 40.0% | |
| TACCATCTATTGTGATGCCA+AGG | - | chr8.4:55922308-55922327 | None:intergenic | 40.0% | |
| TGGCATCACAATAGATGGTA+AGG | + | chr8.4:55922308-55922327 | MS.gene74366:intron | 40.0% | |
| TTGCTTATATTAGTGACCGG+GGG | - | chr8.4:55921143-55921162 | None:intergenic | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8.4:55920428-55920447 | MS.gene74366:CDS | 40.0% |
| ! | CCTTCTCACATCTCTAGTTT+AGG | - | chr8.4:55922123-55922142 | None:intergenic | 40.0% |
| ! | GAAATAAAAAGTGGTGGGGT+AGG | - | chr8.4:55921482-55921501 | None:intergenic | 40.0% |
| ! | GAGGGCATGTTAGTTGAATT+AGG | - | chr8.4:55920489-55920508 | None:intergenic | 40.0% |
| ! | GGTAAACTTAGCACTGAACT+TGG | + | chr8.4:55920300-55920319 | MS.gene74366:CDS | 40.0% |
| ! | TGAACCAGGACCAAGAATTT+TGG | + | chr8.4:55920893-55920912 | MS.gene74366:intron | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8.4:55920439-55920458 | MS.gene74366:CDS | 40.0% |
| !! | GGATCATTTGATTTGGACAC+AGG | - | chr8.4:55921690-55921709 | None:intergenic | 40.0% |
| !! | GGGTGTTGAATGAAAACCAT+TGG | - | chr8.4:55921461-55921480 | None:intergenic | 40.0% |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | + | chr8.4:55920898-55920917 | MS.gene74366:intron | 40.0% |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | - | chr8.4:55920917-55920898 | None:intergenic | 40.0% |
| AAGTCCATCCAGTCATTTGG+AGG | - | chr8.4:55922525-55922544 | None:intergenic | 45.0% | |
| AGTCCATCCAGTCATTTGGA+GGG | - | chr8.4:55922524-55922543 | None:intergenic | 45.0% | |
| CTCCAATGGCCCTATTGAAA+GGG | - | chr8.4:55922064-55922083 | None:intergenic | 45.0% | |
| CTCCTAATGAGTACACCATC+CGG | - | chr8.4:55921277-55921296 | None:intergenic | 45.0% | |
| GAGAAAATCTTGTGTGGACC+AGG | - | chr8.4:55921044-55921063 | None:intergenic | 45.0% | |
| GAGAAACACTTGTGTGAACC+AGG | + | chr8.4:55920879-55920898 | MS.gene74366:intron | 45.0% | |
| GGTACTTACAAGCTCTTTGG+TGG | + | chr8.4:55922381-55922400 | MS.gene74366:CDS | 45.0% | |
| TACCCTTTCAATAGGGCCAT+TGG | + | chr8.4:55922059-55922078 | MS.gene74366:intron | 45.0% | |
| TCCCTTGGCATCACAATAGA+TGG | + | chr8.4:55922303-55922322 | MS.gene74366:intron | 45.0% | |
| TCTCCAATGGCCCTATTGAA+AGG | - | chr8.4:55922065-55922084 | None:intergenic | 45.0% | |
| TGCTTATATTAGTGACCGGG+GGG | - | chr8.4:55921142-55921161 | None:intergenic | 45.0% | |
| TTCAATAGGGCCATTGGAGA+TGG | + | chr8.4:55922065-55922084 | MS.gene74366:intron | 45.0% | |
| ! | TGGACCAGGACCAAGAATTT+TGG | - | chr8.4:55921030-55921049 | None:intergenic | 45.0% |
| AATTTGGACGCGTGGCAATG+CGG | + | chr8.4:55921945-55921964 | MS.gene74366:intron | 50.0% | |
| ATGGCACTGCTGCTGCAAAA+TGG | + | chr8.4:55922463-55922482 | MS.gene74366:CDS | 50.0% | |
| GACCGGATGGTGTACTCATT+AGG | + | chr8.4:55921272-55921291 | MS.gene74366:intron | 50.0% | |
| GCCAGTAAAATTTGGACGCG+TGG | + | chr8.4:55921937-55921956 | MS.gene74366:intron | 50.0% | |
| TGACCCTCCAAATGACTGGA+TGG | + | chr8.4:55922518-55922537 | MS.gene74366:CDS | 50.0% | |
| ! | GCCACGCGTCCAAATTTTAC+TGG | - | chr8.4:55921941-55921960 | None:intergenic | 50.0% |
| AGCGTGACAGAAGCCAAACG+CGG | - | chr8.4:55921882-55921901 | None:intergenic | 55.0% | |
| ATTTGGACGCGTGGCAATGC+GGG | + | chr8.4:55921946-55921965 | MS.gene74366:intron | 55.0% | |
| !! | GACACGTGGCTTGCTACGAT+TGG | - | chr8.4:55921828-55921847 | None:intergenic | 55.0% |
| GCCAAACGCGGAGAGAGAGA+AGG | - | chr8.4:55921870-55921889 | None:intergenic | 60.0% | |
| GCCTTCTCTCTCTCCGCGTT+TGG | + | chr8.4:55921866-55921885 | MS.gene74366:intron | 60.0% | |
| GCTTCTGTCACGCTCCCTGT+CGG | + | chr8.4:55921888-55921907 | MS.gene74366:intron | 60.0% | |
| ! | GCTTGCTACGATTGGCTGCC+TGG | - | chr8.4:55921820-55921839 | None:intergenic | 60.0% |
| ! | GTGTAGCTCACGCGCCGACA+GGG | - | chr8.4:55921905-55921924 | None:intergenic | 65.0% |
| ! | CGTGTAGCTCACGCGCCGAC+AGG | - | chr8.4:55921906-55921925 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55920288 | 55922602 | 55920288 | ID=MS.gene74366 |
| chr8.4 | mRNA | 55920288 | 55922602 | 55920288 | ID=MS.gene74366.t1;Parent=MS.gene74366 |
| chr8.4 | exon | 55920288 | 55920474 | 55920288 | ID=MS.gene74366.t1.exon1;Parent=MS.gene74366.t1 |
| chr8.4 | CDS | 55920288 | 55920474 | 55920288 | ID=cds.MS.gene74366.t1;Parent=MS.gene74366.t1 |
| chr8.4 | exon | 55922322 | 55922602 | 55922322 | ID=MS.gene74366.t1.exon2;Parent=MS.gene74366.t1 |
| chr8.4 | CDS | 55922322 | 55922602 | 55922322 | ID=cds.MS.gene74366.t1;Parent=MS.gene74366.t1 |
| Gene Sequence |
| Protein sequence |
