AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74647

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74647.t1 MTR_6g033280 95.846 337 14 0 1 337 1 337 0.0 667
MS.gene74647.t1 MTR_7g083790 71.512 344 88 3 3 337 14 356 0.0 507
MS.gene74647.t1 MTR_8g099910 76.254 299 67 1 39 337 53 347 2.81e-174 489
MS.gene74647.t1 MTR_4g094578 43.463 283 158 1 57 337 23 305 5.42e-87 265
MS.gene74647.t1 MTR_5g024770 43.448 290 142 1 58 347 16 283 8.37e-84 256
MS.gene74647.t1 MTR_6g034515 26.335 281 173 9 73 335 77 341 7.71e-16 78.2
MS.gene74647.t1 MTR_8g027975 25.500 200 125 5 64 239 154 353 1.18e-14 74.7
MS.gene74647.t1 MTR_8g027975 26.400 250 170 6 64 302 52 298 3.14e-13 70.5
MS.gene74647.t1 MTR_5g073040 26.552 290 186 5 58 332 34 311 1.66e-14 73.9
MS.gene74647.t1 MTR_5g009500 25.253 198 126 5 64 239 141 338 3.51e-14 73.2
MS.gene74647.t1 MTR_5g009500 28.821 229 145 8 64 279 39 262 6.32e-13 69.3
MS.gene74647.t1 MTR_8g076760 27.778 216 123 8 47 239 100 305 3.83e-14 72.8
MS.gene74647.t1 MTR_8g076760 26.590 173 109 5 79 239 30 196 1.59e-11 65.1
MS.gene74647.t1 MTR_1g012030 26.154 195 140 3 64 258 140 330 1.58e-13 71.6
MS.gene74647.t1 MTR_1g012030 31.395 172 106 5 69 233 238 404 4.16e-13 70.5
MS.gene74647.t1 MTR_8g096050 28.436 211 142 5 64 271 228 432 2.42e-13 71.2
MS.gene74647.t1 MTR_8g096050 25.843 178 121 4 66 235 324 498 6.13e-12 67.0
MS.gene74647.t1 MTR_3g098460 25.188 266 168 9 17 271 165 410 3.02e-13 70.9
MS.gene74647.t1 MTR_3g107510 29.379 177 112 4 61 233 220 387 5.54e-13 70.1
MS.gene74647.t1 MTR_3g107510 24.706 170 125 2 66 235 125 291 2.52e-11 64.7
MS.gene74647.t1 MTR_4g119770 22.176 239 159 4 65 279 16 251 1.19e-12 67.8
MS.gene74647.t1 MTR_7g066690 26.872 227 134 8 72 279 26 239 1.36e-12 68.2
MS.gene74647.t1 MTR_2g436930 26.768 198 118 7 59 233 35 228 1.43e-12 67.0
MS.gene74647.t1 MTR_2g436930 26.768 198 118 7 59 233 125 318 2.03e-12 67.8
MS.gene74647.t1 MTR_2g436930 22.857 245 158 5 60 279 12 250 1.10e-11 65.5
MS.gene74647.t1 MTR_7g084400 26.148 283 193 8 64 338 214 488 2.17e-12 68.6
MS.gene74647.t1 MTR_8g098240 25.407 307 199 11 36 332 298 584 2.77e-12 68.2
MS.gene74647.t1 MTR_4g119770 22.176 239 159 4 65 279 16 251 3.25e-12 67.0
MS.gene74647.t1 MTR_4g119770 23.902 205 127 7 59 239 126 325 4.88e-12 66.6
MS.gene74647.t1 MTR_4g114320 25.946 185 131 3 61 242 216 397 9.41e-12 66.2
MS.gene74647.t1 MTR_4g114320 23.853 218 148 6 49 257 104 312 1.28e-11 65.9
MS.gene74647.t1 MTR_3g100570 25.000 260 153 6 59 289 6 252 9.53e-12 65.5
MS.gene74647.t1 MTR_7g064980 26.036 169 113 4 79 239 150 314 9.99e-12 65.5
MS.gene74647.t1 MTR_4g018750 27.313 227 133 8 72 279 24 237 1.53e-11 64.7
MS.gene74647.t1 MTR_1g087840 26.744 172 108 5 77 235 33 199 1.94e-11 64.7
MS.gene74647.t1 MTR_4g018750 27.313 227 133 8 72 279 24 237 2.59e-11 64.3
MS.gene74647.t1 MTR_7g068340 24.645 211 135 6 79 281 103 297 3.04e-11 64.7
MS.gene74647.t1 MTR_7g068340 24.561 171 121 4 70 239 193 356 7.32e-11 63.5
MS.gene74647.t1 MTR_7g084400 27.027 185 129 3 64 244 208 390 3.20e-11 64.7
MS.gene74647.t1 MTR_1g088995 24.783 230 147 7 57 279 31 241 5.31e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74647.t1 AT5G14040 68.182 352 94 2 3 337 6 356 4.69e-180 504
MS.gene74647.t1 AT3G48850 66.954 348 96 3 2 337 5 345 1.24e-175 492
MS.gene74647.t1 AT2G17270 48.252 286 144 2 52 337 11 292 2.46e-97 291
MS.gene74647.t1 AT5G51050 27.526 287 184 8 64 338 224 498 2.36e-18 86.7
MS.gene74647.t1 AT5G66380 27.232 224 126 9 49 249 99 308 4.99e-15 75.5
MS.gene74647.t1 AT4G01100 25.795 283 178 9 23 279 4 280 1.57e-14 74.3
MS.gene74647.t1 AT4G01100 24.500 200 127 5 64 239 159 358 1.68e-12 68.2
MS.gene74647.t1 AT1G25380 29.730 185 114 6 73 245 131 311 1.69e-14 74.3
MS.gene74647.t1 AT1G25380 29.730 185 114 6 73 245 131 311 1.69e-14 74.3
MS.gene74647.t1 AT4G01100 26.296 270 179 9 23 279 4 266 3.75e-14 73.2
MS.gene74647.t1 AT4G01100 24.500 200 127 5 64 239 145 344 1.15e-12 68.9
MS.gene74647.t1 AT1G07030 26.590 173 118 2 64 233 41 207 4.23e-13 69.7
MS.gene74647.t1 AT3G53940 25.581 172 116 4 76 239 193 360 4.81e-13 70.1
MS.gene74647.t1 AT4G01100 24.500 200 127 5 64 239 95 294 8.49e-13 68.6
MS.gene74647.t1 AT4G01100 27.397 219 145 7 72 279 1 216 2.67e-12 67.4
MS.gene74647.t1 AT2G30160 26.804 194 129 3 64 250 43 230 8.55e-13 68.9
MS.gene74647.t1 AT1G79900 24.066 241 171 4 7 247 62 290 1.15e-12 68.2
MS.gene74647.t1 AT4G03115 26.160 237 152 8 67 299 46 263 1.83e-12 67.8
MS.gene74647.t1 AT5G01500 27.684 177 120 4 64 239 219 388 2.37e-12 68.2
MS.gene74647.t1 AT4G03115 26.160 237 152 8 67 299 78 295 2.94e-12 67.4
MS.gene74647.t1 AT3G21390 26.866 201 118 7 59 233 127 324 3.08e-12 67.4
MS.gene74647.t1 AT3G21390 26.866 201 118 7 59 233 149 346 3.23e-12 67.4
MS.gene74647.t1 AT4G32400 30.000 170 111 4 69 233 213 379 3.69e-12 67.4
MS.gene74647.t1 AT4G32400 24.590 244 172 5 64 307 115 346 3.23e-11 64.7
MS.gene74647.t1 AT4G11440 24.453 274 188 6 75 338 342 606 5.07e-12 67.4
MS.gene74647.t1 AT4G11440 24.453 274 188 6 75 338 342 606 5.07e-12 67.4
MS.gene74647.t1 AT3G54110 24.719 267 158 10 46 291 4 248 8.81e-12 65.9
MS.gene74647.t1 AT5G48970 26.263 198 122 5 59 233 61 257 9.66e-12 65.1
MS.gene74647.t1 AT5G48970 26.263 198 122 5 59 233 132 328 1.21e-11 65.5
MS.gene74647.t1 AT5G48970 23.673 245 159 6 60 279 19 260 2.02e-11 65.1
MS.gene74647.t1 AT3G20240 23.292 322 203 9 36 332 34 336 1.30e-11 65.5
MS.gene74647.t1 AT3G51870 22.093 172 126 3 69 239 196 360 1.59e-11 65.5
MS.gene74647.t1 AT2G37890 26.163 172 115 4 76 239 165 332 1.89e-11 65.1
MS.gene74647.t1 AT4G03115 26.667 180 117 5 67 242 46 214 2.41e-11 63.5
MS.gene74647.t1 AT4G03115 26.667 180 117 5 67 242 46 214 2.74e-11 63.2
MS.gene74647.t1 AT2G33820 25.847 236 157 7 79 300 34 265 3.86e-11 63.9

Find 91 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCAGATCTGAGCAATT+TGG 0.187636 6.3:-22728269 None:intergenic
TTATACTTTGTAGCATATTC+TGG 0.189674 6.3:-22728115 None:intergenic
GCACAAGGTGCTTTCAAATA+TGG 0.247065 6.3:+22728049 MS.gene74647:CDS
TCTCCCTCTTCGAATTCTTA+TGG 0.265900 6.3:+22729577 MS.gene74647:CDS
ACAAGGGTGTTGTACCTCTT+TGG 0.267860 6.3:+22728728 MS.gene74647:CDS
CAAGGGTGTTGTACCTCTTT+GGG 0.271633 6.3:+22728729 MS.gene74647:CDS
CTGTGAAGAAGTTGGGATTA+TGG 0.287366 6.3:+22729537 MS.gene74647:CDS
ATTCCTTCTCCTAGTGAATC+TGG 0.292162 6.3:+22727378 MS.gene74647:CDS
ATCAGCAGCAGTTGCTCCTT+TGG 0.315192 6.3:-22729171 None:intergenic
GGATGGGCACCAACATTTCT+TGG 0.315259 6.3:+22728019 MS.gene74647:CDS
AAGAGCATCTCCTCAGGATT+TGG 0.323132 6.3:+22727956 MS.gene74647:CDS
AACTCTAACCGGAGCTCAAT+GGG 0.324460 6.3:+22729604 MS.gene74647:CDS
CCTTCAGATCTGAGCAATTT+GGG 0.337308 6.3:-22728268 None:intergenic
TGTGAAGAAGTTGGGATTAT+GGG 0.338340 6.3:+22729538 MS.gene74647:CDS
TACTATCTTGCTTGCGCCGT+TGG 0.367277 6.3:+22727432 MS.gene74647:CDS
CACAAGGTGCTTTCAAATAT+GGG 0.381124 6.3:+22728050 MS.gene74647:CDS
CTCAGATCTGAAGGAGTCTC+AGG 0.382857 6.3:+22728277 MS.gene74647:CDS
GTGCATTCTTCCTTTGGTGT+AGG 0.391511 6.3:-22729041 None:intergenic
CTTATGGTTGGAACTCTAAC+CGG 0.393210 6.3:+22729593 MS.gene74647:CDS
CTCAAGGAACAAGGAGTTAG+AGG 0.409377 6.3:+22727986 MS.gene74647:CDS
TTTGCTAGAGGTCTTTCTGA+TGG 0.423000 6.3:+22728241 MS.gene74647:CDS
AAGACATTAGTCTACCTTGC+TGG 0.423131 6.3:+22728136 MS.gene74647:CDS
TGGACCAACAACATCTGAAT+AGG 0.423609 6.3:-22728095 None:intergenic
CTAACCTTGATTGCCTCAAA+TGG 0.427161 6.3:-22728199 None:intergenic
TGCATTCTTCCTTTGGTGTA+GGG 0.436971 6.3:-22729040 None:intergenic
TTGCTAGAGGTCTTTCTGAT+GGG 0.440708 6.3:+22728242 MS.gene74647:CDS
CCTCTTCGAATTCTTATGGT+TGG 0.441909 6.3:+22729581 MS.gene74647:CDS
CAATGATTTCAGGTTGTACA+AGG 0.446882 6.3:+22728711 MS.gene74647:intron
TTCTTCCTTTGGTGTAGGGA+TGG 0.448749 6.3:-22729036 None:intergenic
TTGTTGTGGATTTACTCATA+TGG 0.450811 6.3:+22727464 MS.gene74647:CDS
TTGTCCATTTGAGGCAATCA+AGG 0.456861 6.3:+22728195 MS.gene74647:CDS
CAACACTCACACCAAGTTGT+AGG 0.458197 6.3:-22729070 None:intergenic
TATCTTGCTTGCGCCGTTGG+TGG 0.461277 6.3:+22727435 MS.gene74647:CDS
TGTTGCACTTTGTCCATTTG+AGG 0.466804 6.3:+22728186 MS.gene74647:CDS
TGAGGAGATGCTCTTGTACT+TGG 0.474116 6.3:-22727948 None:intergenic
GAACTCTAACCGGAGCTCAA+TGG 0.482681 6.3:+22729603 MS.gene74647:CDS
CAACTTGGTGTGAGTGTTGT+CGG 0.483390 6.3:+22729074 MS.gene74647:CDS
CCCAAATTGCTCAGATCTGA+AGG 0.485546 6.3:+22728268 MS.gene74647:CDS
AACACTCACACCAAGTTGTA+GGG 0.491562 6.3:-22729069 None:intergenic
GAGATGCTCTTGTACTTGGT+GGG 0.493721 6.3:-22727944 None:intergenic
GGAGATGCTCTTGTACTTGG+TGG 0.497061 6.3:-22727945 None:intergenic
GGAGAAGGAATCATAAACTT+AGG 0.499300 6.3:-22727366 None:intergenic
TTGCTCCTTTGGAACTGTTG+AGG 0.524603 6.3:-22729160 None:intergenic
AAAGAGACAAGATTATCTGC+AGG 0.540708 6.3:-22729137 None:intergenic
CACAACTGCACATAATATAC+CGG 0.540838 6.3:-22729108 None:intergenic
TGATGCATTCAAAGTTTCTG+TGG 0.542954 6.3:+22729634 MS.gene74647:CDS
AAGTCCTATTCAGATGTTGT+TGG 0.545723 6.3:+22728091 MS.gene74647:CDS
ATAAATTCCCCATTGAGCTC+CGG 0.548121 6.3:-22729612 None:intergenic
AAGTACAAGAGCATCTCCTC+AGG 0.549398 6.3:+22727950 MS.gene74647:CDS
TTCCTTCTCCTAGTGAATCT+GGG 0.550308 6.3:+22727379 MS.gene74647:CDS
TGCTGGATCAGCTTCTGCTG+AGG 0.551750 6.3:+22728153 MS.gene74647:CDS
GAGATTCCGCCGCCACATGA+TGG 0.552179 6.3:-22727344 None:intergenic
GATGCATTCAAAGTTTCTGT+GGG 0.552496 6.3:+22729635 MS.gene74647:CDS
AGATGCTCTTGTACTTGGTG+GGG 0.562859 6.3:-22727943 None:intergenic
TCTTTCCTCAACAGTTCCAA+AGG 0.563971 6.3:+22729155 MS.gene74647:CDS
ATGCAGGCTGTGAAGAAGTT+GGG 0.568691 6.3:+22729530 MS.gene74647:intron
CTCCCAGATTCACTAGGAGA+AGG 0.569262 6.3:-22727381 None:intergenic
GTAGTGGAGTAGAGGAAGCT+TGG 0.569621 6.3:-22727279 None:intergenic
CGTTTCTAGCGTCCATCATG+TGG 0.571450 6.3:+22727332 MS.gene74647:CDS
AATGCAGGCTGTGAAGAAGT+TGG 0.576794 6.3:+22729529 MS.gene74647:intron
GTCGCCGCAAAAGACGATCA+TGG 0.581482 6.3:+22727305 MS.gene74647:CDS
GTTGTCGGTGGATATTTAGC+CGG 0.581741 6.3:+22729089 MS.gene74647:CDS
TAGCGTCCATCATGTGGCGG+CGG 0.585338 6.3:+22727338 MS.gene74647:CDS
CTCCTAGTGAATCTGGGAGA+AGG 0.585339 6.3:+22727385 MS.gene74647:CDS
GTTAGAGTTCAAACTCAACC+TGG 0.590024 6.3:+22728217 MS.gene74647:CDS
TTCCTTCTCCCAGATTCACT+AGG 0.599901 6.3:-22727387 None:intergenic
AAGGGTGTTGTACCTCTTTG+GGG 0.603568 6.3:+22728730 MS.gene74647:CDS
TTACATTTGACAAGATCAAG+AGG 0.607792 6.3:-22727495 None:intergenic
TTTCTTGGTTACAGTGCACA+AGG 0.613928 6.3:+22728034 MS.gene74647:CDS
GATAGTTTGCTTGAGAAACA+AGG 0.614192 6.3:+22729880 MS.gene74647:CDS
GTGAAGAAGTTGGGATTATG+GGG 0.615409 6.3:+22729539 MS.gene74647:CDS
GCGACGATGTAGTGGAGTAG+AGG 0.615490 6.3:-22727287 None:intergenic
TCTTGTCAAATGTAACATGC+AGG 0.616213 6.3:+22727503 MS.gene74647:CDS
GTTGGTGGAAGTATTTGTTG+TGG 0.617067 6.3:+22727450 MS.gene74647:CDS
GGAGTGATGCTCAAGGAACA+AGG 0.620748 6.3:+22727977 MS.gene74647:CDS
CAGCAGAAGCTGATCCAGCA+AGG 0.621627 6.3:-22728150 None:intergenic
CAACCATAAGAATTCGAAGA+GGG 0.629648 6.3:-22729580 None:intergenic
AGGATTTGGAGTGATGCTCA+AGG 0.637160 6.3:+22727970 MS.gene74647:CDS
ACAACAAATACTTCCACCAA+CGG 0.638726 6.3:-22727448 None:intergenic
TTCTAGCGTCCATCATGTGG+CGG 0.640747 6.3:+22727335 MS.gene74647:CDS
GCATGCCATCCCTACACCAA+AGG 0.646638 6.3:+22729031 MS.gene74647:CDS
GGAACTTGTCTTCCCCAAAG+AGG 0.653133 6.3:-22728742 None:intergenic
GCACTGTAACCAAGAAATGT+TGG 0.663444 6.3:-22728028 None:intergenic
GAAAGACCTCTAGCAAAACC+AGG 0.669110 6.3:-22728235 None:intergenic
GAGCATCACTCCAAATCCTG+AGG 0.669573 6.3:-22727966 None:intergenic
TCAGATCTGAAGGAGTCTCA+GGG 0.672635 6.3:+22728278 MS.gene74647:CDS
AATGATTTCAGGTTGTACAA+GGG 0.691576 6.3:+22728712 MS.gene74647:intron
ACTCTAACCGGAGCTCAATG+GGG 0.705197 6.3:+22729605 MS.gene74647:CDS
CTTGGTGTGAGTGTTGTCGG+TGG 0.705258 6.3:+22729077 MS.gene74647:CDS
TTATGGGGTATGTGTACACG+CGG 0.708012 6.3:+22729554 MS.gene74647:CDS
CCAACCATAAGAATTCGAAG+AGG 0.749924 6.3:-22729581 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTTACATTGTTATAT+AGG + chr6.3:22727699-22727718 MS.gene74647:intron 10.0%
!!! ATAAATGAAAAATTTGAGTT+GGG + chr6.3:22728366-22728385 MS.gene74647:intron 15.0%
!!! ATTACTAACATTTTTTATGT+AGG - chr6.3:22729278-22729297 None:intergenic 15.0%
!!! TGAATTTGTTTAGATTATTA+CGG + chr6.3:22729729-22729748 MS.gene74647:intron 15.0%
!! CATTCATACACAATAATAAA+AGG + chr6.3:22728420-22728439 MS.gene74647:intron 20.0%
!! CTAAACAAATTCAAAAAGTT+GGG - chr6.3:22729722-22729741 None:intergenic 20.0%
!! GATAAATGAAAAATTTGAGT+TGG + chr6.3:22728365-22728384 MS.gene74647:intron 20.0%
!! TCTAAACAAATTCAAAAAGT+TGG - chr6.3:22729723-22729742 None:intergenic 20.0%
!!! AAAATTGTTTTTCCTTTATC+AGG + chr6.3:22729757-22729776 MS.gene74647:intron 20.0%
!!! CTTTTATTATTGTGTATGAA+TGG - chr6.3:22728422-22728441 None:intergenic 20.0%
! ATGAAATGTACAATGATTTC+AGG + chr6.3:22728701-22728720 MS.gene74647:intron 25.0%
! CCTAAAATAATGTAAAAGCA+TGG - chr6.3:22727577-22727596 None:intergenic 25.0%
! CTGCAACAAAAAAACATTAT+AGG - chr6.3:22728959-22728978 None:intergenic 25.0%
! GTCAATAACAATGATGAAAT+AGG - chr6.3:22729499-22729518 None:intergenic 25.0%
! GTTATATATCTAAGAAAGAG+CGG - chr6.3:22729248-22729267 None:intergenic 25.0%
! TGTTACTCATTCTAGATATT+AGG + chr6.3:22728667-22728686 MS.gene74647:intron 25.0%
! TTAGGGACTAAAATAAGAAA+GGG - chr6.3:22729221-22729240 None:intergenic 25.0%
! TTAGTTTATTGTTCACATAG+TGG - chr6.3:22728930-22728949 None:intergenic 25.0%
! TTATACTTTGTAGCATATTC+TGG - chr6.3:22728118-22728137 None:intergenic 25.0%
! TTTAGGGACTAAAATAAGAA+AGG - chr6.3:22729222-22729241 None:intergenic 25.0%
!! ACATGTACAATTTGAAACAA+TGG - chr6.3:22728650-22728669 None:intergenic 25.0%
!! AGGTACTGTAATAGTTATTA+TGG + chr6.3:22728440-22728459 MS.gene74647:intron 25.0%
!! CCATGCTTTTACATTATTTT+AGG + chr6.3:22727574-22727593 MS.gene74647:intron 25.0%
!! TATTTAAGCTCTCTTTTACT+TGG - chr6.3:22729910-22729929 None:intergenic 25.0%
!!! TCTAGTTCTGATATATTGAT+TGG + chr6.3:22729691-22729710 MS.gene74647:intron 25.0%
!!! TGTATTTTATTTAGTATCGC+TGG + chr6.3:22729390-22729409 MS.gene74647:intron 25.0%
ATGGAAAATCTTCAATGCAA+AGG - chr6.3:22727558-22727577 None:intergenic 30.0%
CATAGATTCCACTTTCAATT+CGG - chr6.3:22729372-22729391 None:intergenic 30.0%
TGGAAAATCTTCAATGCAAA+GGG - chr6.3:22727557-22727576 None:intergenic 30.0%
TTACATTTGACAAGATCAAG+AGG - chr6.3:22727498-22727517 None:intergenic 30.0%
TTGACTATACTTTGTAATGC+AGG + chr6.3:22729514-22729533 MS.gene74647:intron 30.0%
TTGTTGTGGATTTACTCATA+TGG + chr6.3:22727464-22727483 MS.gene74647:CDS 30.0%
TTTATAGAATTGGATCGAAC+TGG - chr6.3:22728856-22728875 None:intergenic 30.0%
! AGTCTTGTCAAACAAGAAAA+GGG + chr6.3:22729341-22729360 MS.gene74647:intron 30.0%
! TACTGATTATCTTATACTCG+AGG + chr6.3:22729473-22729492 MS.gene74647:intron 30.0%
!! AATGATTTCAGGTTGTACAA+GGG + chr6.3:22728712-22728731 MS.gene74647:intron 30.0%
!! AGGAAACAAAAAGTATTAGC+AGG - chr6.3:22728797-22728816 None:intergenic 30.0%
AAAGAGACAAGATTATCTGC+AGG - chr6.3:22729140-22729159 None:intergenic 35.0%
AACAAGTGTGGAAACTTACA+TGG - chr6.3:22728766-22728785 None:intergenic 35.0%
AAGTCCTATTCAGATGTTGT+TGG + chr6.3:22728091-22728110 MS.gene74647:CDS 35.0%
ACAACAAATACTTCCACCAA+CGG - chr6.3:22727451-22727470 None:intergenic 35.0%
CAACCATAAGAATTCGAAGA+GGG - chr6.3:22729583-22729602 None:intergenic 35.0%
CACAACTGCACATAATATAC+CGG - chr6.3:22729111-22729130 None:intergenic 35.0%
CTATAAAACCGACAACCAAT+CGG + chr6.3:22728869-22728888 MS.gene74647:intron 35.0%
GACAATGTCTAACGCATTTA+TGG - chr6.3:22728467-22728486 None:intergenic 35.0%
GATGCATTCAAAGTTTCTGT+GGG + chr6.3:22729635-22729654 MS.gene74647:CDS 35.0%
GGAGAAGGAATCATAAACTT+AGG - chr6.3:22727369-22727388 None:intergenic 35.0%
GGGAACATCGATATACAAAA+TGG + chr6.3:22728386-22728405 MS.gene74647:intron 35.0%
TAAGAAAGAGCGGTAGTTTA+GGG - chr6.3:22729238-22729257 None:intergenic 35.0%
TACATTTGAACTGTTGTGAC+AGG + chr6.3:22728597-22728616 MS.gene74647:intron 35.0%
TCTTGTCAAATGTAACATGC+AGG + chr6.3:22727503-22727522 MS.gene74647:CDS 35.0%
TGATGCATTCAAAGTTTCTG+TGG + chr6.3:22729634-22729653 MS.gene74647:CDS 35.0%
TGTGAAGAAGTTGGGATTAT+GGG + chr6.3:22729538-22729557 MS.gene74647:CDS 35.0%
! CACAAGGTGCTTTCAAATAT+GGG + chr6.3:22728050-22728069 MS.gene74647:CDS 35.0%
! CAGTCTTGTCAAACAAGAAA+AGG + chr6.3:22729340-22729359 MS.gene74647:intron 35.0%
! GTTTTTGTGCATTCTTCCTT+TGG - chr6.3:22729050-22729069 None:intergenic 35.0%
!! CAATGATTTCAGGTTGTACA+AGG + chr6.3:22728711-22728730 MS.gene74647:intron 35.0%
!! GATAGTTTGCTTGAGAAACA+AGG + chr6.3:22729880-22729899 MS.gene74647:CDS 35.0%
!! TAGAGGATTTTTCAGAGGAT+GGG + chr6.3:22728003-22728022 MS.gene74647:CDS 35.0%
!! TTAGAGGATTTTTCAGAGGA+TGG + chr6.3:22728002-22728021 MS.gene74647:CDS 35.0%
!!! GGTTGTCGGTTTTATAGAAT+TGG - chr6.3:22728866-22728885 None:intergenic 35.0%
AACACTCACACCAAGTTGTA+GGG - chr6.3:22729072-22729091 None:intergenic 40.0%
ATAAATTCCCCATTGAGCTC+CGG - chr6.3:22729615-22729634 None:intergenic 40.0%
ATTCCTTCTCCTAGTGAATC+TGG + chr6.3:22727378-22727397 MS.gene74647:CDS 40.0%
CAGGCAAGTATAAACAAGTG+TGG - chr6.3:22728778-22728797 None:intergenic 40.0%
CCAACCATAAGAATTCGAAG+AGG - chr6.3:22729584-22729603 None:intergenic 40.0%
CCTCTTCGAATTCTTATGGT+TGG + chr6.3:22729581-22729600 MS.gene74647:CDS 40.0%
CCTTCAGATCTGAGCAATTT+GGG - chr6.3:22728271-22728290 None:intergenic 40.0%
CTAACCTTGATTGCCTCAAA+TGG - chr6.3:22728202-22728221 None:intergenic 40.0%
CTAAGAAAGAGCGGTAGTTT+AGG - chr6.3:22729239-22729258 None:intergenic 40.0%
CTATCTATCTTGCTTCTGCA+CGG - chr6.3:22729853-22729872 None:intergenic 40.0%
CTGTGAAGAAGTTGGGATTA+TGG + chr6.3:22729537-22729556 MS.gene74647:CDS 40.0%
CTTATGGTTGGAACTCTAAC+CGG + chr6.3:22729593-22729612 MS.gene74647:CDS 40.0%
GCACTGTAACCAAGAAATGT+TGG - chr6.3:22728031-22728050 None:intergenic 40.0%
GGGACTAAAATAAGAAAGGG+CGG - chr6.3:22729218-22729237 None:intergenic 40.0%
GTCAAATGTAACATGCAGGT+TGG + chr6.3:22727507-22727526 MS.gene74647:intron 40.0%
GTGAAGAAGTTGGGATTATG+GGG + chr6.3:22729539-22729558 MS.gene74647:CDS 40.0%
GTTAGAGTTCAAACTCAACC+TGG + chr6.3:22728217-22728236 MS.gene74647:CDS 40.0%
TCCTTCAGATCTGAGCAATT+TGG - chr6.3:22728272-22728291 None:intergenic 40.0%
TCTCCCTCTTCGAATTCTTA+TGG + chr6.3:22729577-22729596 MS.gene74647:CDS 40.0%
TCTTTCCTCAACAGTTCCAA+AGG + chr6.3:22729155-22729174 MS.gene74647:CDS 40.0%
TGCACAAAAACCCTACAACT+TGG + chr6.3:22729059-22729078 MS.gene74647:CDS 40.0%
TGGACCAACAACATCTGAAT+AGG - chr6.3:22728098-22728117 None:intergenic 40.0%
TGTTGCACTTTGTCCATTTG+AGG + chr6.3:22728186-22728205 MS.gene74647:CDS 40.0%
TTCCTTCTCCTAGTGAATCT+GGG + chr6.3:22727379-22727398 MS.gene74647:CDS 40.0%
TTGAGCGTACTCTCGATTAT+TGG + chr6.3:22729304-22729323 MS.gene74647:intron 40.0%
TTGCTAGAGGTCTTTCTGAT+GGG + chr6.3:22728242-22728261 MS.gene74647:CDS 40.0%
TTTCTTGGTTACAGTGCACA+AGG + chr6.3:22728034-22728053 MS.gene74647:CDS 40.0%
TTTGCTAGAGGTCTTTCTGA+TGG + chr6.3:22728241-22728260 MS.gene74647:CDS 40.0%
! AAGACATTAGTCTACCTTGC+TGG + chr6.3:22728136-22728155 MS.gene74647:CDS 40.0%
! GCACAAGGTGCTTTCAAATA+TGG + chr6.3:22728049-22728068 MS.gene74647:CDS 40.0%
! TCTTCCATGATCGTCTTTTG+CGG - chr6.3:22727312-22727331 None:intergenic 40.0%
! TGAACCGCAGTTTGCTTAAT+CGG - chr6.3:22728831-22728850 None:intergenic 40.0%
! TGCATTCTTCCTTTGGTGTA+GGG - chr6.3:22729043-22729062 None:intergenic 40.0%
! TTGTCCATTTGAGGCAATCA+AGG + chr6.3:22728195-22728214 MS.gene74647:CDS 40.0%
!! GGAGTTAGAGGATTTTTCAG+AGG + chr6.3:22727998-22728017 MS.gene74647:CDS 40.0%
!! GTTGGTGGAAGTATTTGTTG+TGG + chr6.3:22727450-22727469 MS.gene74647:CDS 40.0%
!!! CTTAATCGGTTCGTTTTAGC+AGG - chr6.3:22728817-22728836 None:intergenic 40.0%
AACTCTAACCGGAGCTCAAT+GGG + chr6.3:22729604-22729623 MS.gene74647:CDS 45.0%
AATGCAGGCTGTGAAGAAGT+TGG + chr6.3:22729529-22729548 MS.gene74647:intron 45.0%
AGTGGAACAGTCCGTTCAAT+TGG - chr6.3:22728912-22728931 None:intergenic 45.0%
ATGCAGGCTGTGAAGAAGTT+GGG + chr6.3:22729530-22729549 MS.gene74647:intron 45.0%
CAAAGCTAAGAAGCAGAAGC+TGG - chr6.3:22729813-22729832 None:intergenic 45.0%
CAACACTCACACCAAGTTGT+AGG - chr6.3:22729073-22729092 None:intergenic 45.0%
CCCAAATTGCTCAGATCTGA+AGG + chr6.3:22728268-22728287 MS.gene74647:CDS 45.0%
CGAACCGATTAAGCAAACTG+CGG + chr6.3:22728824-22728843 MS.gene74647:intron 45.0%
CTCAAGGAACAAGGAGTTAG+AGG + chr6.3:22727986-22728005 MS.gene74647:CDS 45.0%
GAAAGACCTCTAGCAAAACC+AGG - chr6.3:22728238-22728257 None:intergenic 45.0%
GAGATGCTCTTGTACTTGGT+GGG - chr6.3:22727947-22727966 None:intergenic 45.0%
GGCTCGTTCAACCAATTGAA+CGG + chr6.3:22728898-22728917 MS.gene74647:intron 45.0%
GTTGTCGGTGGATATTTAGC+CGG + chr6.3:22729089-22729108 MS.gene74647:CDS 45.0%
TCAGATCTGAAGGAGTCTCA+GGG + chr6.3:22728278-22728297 MS.gene74647:CDS 45.0%
TCCTTTATCAGGCTAACCAC+TGG + chr6.3:22729768-22729787 MS.gene74647:intron 45.0%
TGAGGAGATGCTCTTGTACT+TGG - chr6.3:22727951-22727970 None:intergenic 45.0%
TTATGGGGTATGTGTACACG+CGG + chr6.3:22729554-22729573 MS.gene74647:CDS 45.0%
TTCCTTCTCCCAGATTCACT+AGG - chr6.3:22727390-22727409 None:intergenic 45.0%
TTTATCAGGCTAACCACTGG+TGG + chr6.3:22729771-22729790 MS.gene74647:intron 45.0%
! AGATGCTCTTGTACTTGGTG+GGG - chr6.3:22727946-22727965 None:intergenic 45.0%
! AGGATTTGGAGTGATGCTCA+AGG + chr6.3:22727970-22727989 MS.gene74647:CDS 45.0%
! GTGCATTCTTCCTTTGGTGT+AGG - chr6.3:22729044-22729063 None:intergenic 45.0%
! TTCTTCCTTTGGTGTAGGGA+TGG - chr6.3:22729039-22729058 None:intergenic 45.0%
!! AAGAGCATCTCCTCAGGATT+TGG + chr6.3:22727956-22727975 MS.gene74647:CDS 45.0%
!! AAGGGTGTTGTACCTCTTTG+GGG + chr6.3:22728730-22728749 MS.gene74647:CDS 45.0%
!! AAGTACAAGAGCATCTCCTC+AGG + chr6.3:22727950-22727969 MS.gene74647:CDS 45.0%
!! ACAAGGGTGTTGTACCTCTT+TGG + chr6.3:22728728-22728747 MS.gene74647:CDS 45.0%
!! ACCAGTGGTTAGCCTGATAA+AGG - chr6.3:22729772-22729791 None:intergenic 45.0%
!! CAACTTGGTGTGAGTGTTGT+CGG + chr6.3:22729074-22729093 MS.gene74647:CDS 45.0%
!! CAAGGGTGTTGTACCTCTTT+GGG + chr6.3:22728729-22728748 MS.gene74647:CDS 45.0%
!! TTGCTCCTTTGGAACTGTTG+AGG - chr6.3:22729163-22729182 None:intergenic 45.0%
!!! ACTCAACCTGGTTTTGCTAG+AGG + chr6.3:22728229-22728248 MS.gene74647:CDS 45.0%
ACTCTAACCGGAGCTCAATG+GGG + chr6.3:22729605-22729624 MS.gene74647:CDS 50.0%
ATCAGCAGCAGTTGCTCCTT+TGG - chr6.3:22729174-22729193 None:intergenic 50.0%
CTCAGATCTGAAGGAGTCTC+AGG + chr6.3:22728277-22728296 MS.gene74647:CDS 50.0%
CTCCCAGATTCACTAGGAGA+AGG - chr6.3:22727384-22727403 None:intergenic 50.0%
CTCCTAGTGAATCTGGGAGA+AGG + chr6.3:22727385-22727404 MS.gene74647:CDS 50.0%
GAACTCTAACCGGAGCTCAA+TGG + chr6.3:22729603-22729622 MS.gene74647:CDS 50.0%
GAGCATCACTCCAAATCCTG+AGG - chr6.3:22727969-22727988 None:intergenic 50.0%
GGAACTTGTCTTCCCCAAAG+AGG - chr6.3:22728745-22728764 None:intergenic 50.0%
GGAGATGCTCTTGTACTTGG+TGG - chr6.3:22727948-22727967 None:intergenic 50.0%
GGAGTGATGCTCAAGGAACA+AGG + chr6.3:22727977-22727996 MS.gene74647:CDS 50.0%
GGATGGGCACCAACATTTCT+TGG + chr6.3:22728019-22728038 MS.gene74647:CDS 50.0%
GGGTCTCACCGAATTGAAAG+TGG + chr6.3:22729361-22729380 MS.gene74647:intron 50.0%
TACTATCTTGCTTGCGCCGT+TGG + chr6.3:22727432-22727451 MS.gene74647:CDS 50.0%
TTCTAGCGTCCATCATGTGG+CGG + chr6.3:22727335-22727354 MS.gene74647:CDS 50.0%
! GTAGTGGAGTAGAGGAAGCT+TGG - chr6.3:22727282-22727301 None:intergenic 50.0%
!! CGTTTCTAGCGTCCATCATG+TGG + chr6.3:22727332-22727351 MS.gene74647:CDS 50.0%
CAGCAGAAGCTGATCCAGCA+AGG - chr6.3:22728153-22728172 None:intergenic 55.0%
GCATGCCATCCCTACACCAA+AGG + chr6.3:22729031-22729050 MS.gene74647:CDS 55.0%
GTCGCCGCAAAAGACGATCA+TGG + chr6.3:22727305-22727324 MS.gene74647:CDS 55.0%
TATCTTGCTTGCGCCGTTGG+TGG + chr6.3:22727435-22727454 MS.gene74647:CDS 55.0%
TGCTGGATCAGCTTCTGCTG+AGG + chr6.3:22728153-22728172 MS.gene74647:CDS 55.0%
! CCAGTCTGCCGATTGGTTGT+CGG - chr6.3:22728880-22728899 None:intergenic 55.0%
! CTTGGTGTGAGTGTTGTCGG+TGG + chr6.3:22729077-22729096 MS.gene74647:CDS 55.0%
! CTTTTGCGGCGACGATGTAG+TGG - chr6.3:22727298-22727317 None:intergenic 55.0%
! GCGACGATGTAGTGGAGTAG+AGG - chr6.3:22727290-22727309 None:intergenic 55.0%
AGCAGGAGCAACACCACCAG+TGG - chr6.3:22729787-22729806 None:intergenic 60.0%
CCGACAACCAATCGGCAGAC+TGG + chr6.3:22728877-22728896 MS.gene74647:intron 60.0%
GAACGAGCCAGTCTGCCGAT+TGG - chr6.3:22728887-22728906 None:intergenic 60.0%
GAAGCAGAAGCTGGAGCAGC+AGG - chr6.3:22729804-22729823 None:intergenic 60.0%
GAGATTCCGCCGCCACATGA+TGG - chr6.3:22727347-22727366 None:intergenic 60.0%
TAGCGTCCATCATGTGGCGG+CGG + chr6.3:22727338-22727357 MS.gene74647:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 22727261 22729930 22727261 ID=MS.gene74647
chr6.3 mRNA 22727261 22729930 22727261 ID=MS.gene74647.t1;Parent=MS.gene74647
chr6.3 exon 22727261 22727524 22727261 ID=MS.gene74647.t1.exon1;Parent=MS.gene74647.t1
chr6.3 CDS 22727261 22727524 22727261 ID=cds.MS.gene74647.t1;Parent=MS.gene74647.t1
chr6.3 exon 22727938 22728299 22727938 ID=MS.gene74647.t1.exon2;Parent=MS.gene74647.t1
chr6.3 CDS 22727938 22728299 22727938 ID=cds.MS.gene74647.t1;Parent=MS.gene74647.t1
chr6.3 exon 22728723 22728766 22728723 ID=MS.gene74647.t1.exon3;Parent=MS.gene74647.t1
chr6.3 CDS 22728723 22728766 22728723 ID=cds.MS.gene74647.t1;Parent=MS.gene74647.t1
chr6.3 exon 22728979 22729193 22728979 ID=MS.gene74647.t1.exon4;Parent=MS.gene74647.t1
chr6.3 CDS 22728979 22729193 22728979 ID=cds.MS.gene74647.t1;Parent=MS.gene74647.t1
chr6.3 exon 22729536 22729660 22729536 ID=MS.gene74647.t1.exon5;Parent=MS.gene74647.t1
chr6.3 CDS 22729536 22729660 22729536 ID=cds.MS.gene74647.t1;Parent=MS.gene74647.t1
chr6.3 exon 22729858 22729930 22729858 ID=MS.gene74647.t1.exon6;Parent=MS.gene74647.t1
chr6.3 CDS 22729858 22729930 22729858 ID=cds.MS.gene74647.t1;Parent=MS.gene74647.t1
Gene Sequence

>MS.gene74647

ATGGATCGTTCTCTCATACCAAGCTTCCTCTACTCCACTACATCGTCGCCGCAAAAGACGATCATGGAAGACGTTTCTAGCGTCCATCATGTGGCGGCGGAATCTCCTAAGTTTATGATTCCTTCTCCTAGTGAATCTGGGAGAAGGAATATAGAGTTGTTCTCTCGTGATTACTATCTTGCTTGCGCCGTTGGTGGAAGTATTTGTTGTGGATTTACTCATATGGCAGTTACACCTCTTGATCTTGTCAAATGTAACATGCAGGTTGGTCTCTTTTCTCTTCATCTTATCTTCCCTTTGCATTGAAGATTTTCCATGCTTTTACATTATTTTAGGAAATTATTTGTTATAGATTGATTGAGCACAACTTTTTTATACATATAAGTCAATCAAATTATAAGATCACTTTGTTATATGTAAGTAATTAAAACTTTTTACAAATATTTACATTGTTATATAGGTTAATTCTGATTCTTAAGACACAGTTTGATCATATGCATTATTCAAATAATCTTTTTCGATCATATTTTTAGACTAATAAATAAAGATAAATGTTCGTATATATATAAGATGTTGTTCGATTTATTTCAATGAATATTTTCAAAATATTAACTTTTTATAATTTTTGCTAATAGATAATTAACGATATTATCATGCTTAATCATTGTGAATTTCAGATTGACCCCACCAAGTACAAGAGCATCTCCTCAGGATTTGGAGTGATGCTCAAGGAACAAGGAGTTAGAGGATTTTTCAGAGGATGGGCACCAACATTTCTTGGTTACAGTGCACAAGGTGCTTTCAAATATGGGCTTTATGAGTACTTCAAGAAGTCCTATTCAGATGTTGTTGGTCCAGAATATGCTACAAAGTATAAGACATTAGTCTACCTTGCTGGATCAGCTTCTGCTGAGGTTATTGCTGATGTTGCACTTTGTCCATTTGAGGCAATCAAGGTTAGAGTTCAAACTCAACCTGGTTTTGCTAGAGGTCTTTCTGATGGGTTGCCCAAATTGCTCAGATCTGAAGGAGTCTCAGGGTATGTTAACTTTATAATTTTACAAAATTTATTTTAAATTTTTAGATACATTTATTATTCGTCATGATAAATGAAAAATTTGAGTTGGGAACATCGATATACAAAATGGTATTTTAGTACCATTCATACACAATAATAAAAGGTACTGTAATAGTTATTATGGTCCATAAATGCGTTAGACATTGTCACTATAGTATTTTAATTACAAACACATTCGAGACTATATTATCTAACGAAAGACACATTTGAGAATCAAAATGACTAACAAAAGACACATGTTTGTTTGTGTAATTTTGATACATTTGAACTGTTGTGACAGGTTCTTGCGCATTTAGTTTTTAAGTTTTCCATTGTTTCAAATTGTACATGTTACTCATTCTAGATATTAGGATAAGCTTTTGATGAAATGTACAATGATTTCAGGTTGTACAAGGGTGTTGTACCTCTTTGGGGAAGACAAGTTCCATGTAAGTTTCCACACTTGTTTATACTTGCCTGCTAATACTTTTTGTTTCCTGCTAAAACGAACCGATTAAGCAAACTGCGGTTCAATCCAGTTCGATCCAATTCTATAAAACCGACAACCAATCGGCAGACTGGCTCGTTCAACCAATTGAACGGACTGTTCCACTATGTGAACAATAAACTAATGAATGCCTATAATGTTTTTTTGTTGCAGATACAATGATGAAGTTTGCTTCTTATGAAAACATTGTTGAGCTGATCTACAAGCATGCCATCCCTACACCAAAGGAAGAATGCACAAAAACCCTACAACTTGGTGTGAGTGTTGTCGGTGGATATTTAGCCGGTATATTATGTGCAGTTGTGTCTCATCCTGCAGATAATCTTGTCTCTTTCCTCAACAGTTCCAAAGGAGCAACTGCTGCTGATGTGAGTCTCGCATAAAATTTACCGCCCTTTCTTATTTTAGTCCCTAAACTACCGCTCTTTCTTAGATATATAACAAGTACTCCTACATAAAAAATGTTAGTAATACTCTCTTGAGCGTACTCTCGATTATTGGATGAAATTCACGTCAGTCTTGTCAAACAAGAAAAGGGTCTCACCGAATTGAAAGTGGAATCTATGTATTTTATTTAGTATCGCTGGTTTTTCATCGAAAAATACAAATACAAAATTTAAAAAATAGAGAGTATGTTGCTAGCATTTTACTGATTATCTTATACTCGAGGCCTATTTCATCATTGTTATTGACTATACTTTGTAATGCAGGCTGTGAAGAAGTTGGGATTATGGGGTATGTGTACACGCGGTCTCCCTCTTCGAATTCTTATGGTTGGAACTCTAACCGGAGCTCAATGGGGAATTTATGATGCATTCAAAGTTTCTGTGGGACTGTAAGTTCTTACAATATATGCTTGTTATGTTCTAGTTCTGATATATTGATTGGTTCATCCCAACTTTTTGAATTTGTTTAGATTATTACGGAACTGAAAATTGTTTTTCCTTTATCAGGCTAACCACTGGTGGTGTTGCTCCTGCTGCTCCAGCTTCTGCTTCTTAGCTTTGAAAAGATGCAAAATGTTCCGTGCAGAAGCAAGATAGATAGAACACTTGATAGTTTGCTTGAGAAACAAGGAAAACCAAGTAAAAGAGAGCTTAAATAA
Protein sequence

>MS.gene74647.t1

MDRSLIPSFLYSTTSSPQKTIMEDVSSVHHVAAESPKFMIPSPSESGRRNIELFSRDYYLACAVGGSICCGFTHMAVTPLDLVKCNMQIDPTKYKSISSGFGVMLKEQGVRGFFRGWAPTFLGYSAQGAFKYGLYEYFKKSYSDVVGPEYATKYKTLVYLAGSASAEVIADVALCPFEAIKVRVQTQPGFARGLSDGLPKLLRSEGVSGLYKGVVPLWGRQVPYTMMKFASYENIVELIYKHAIPTPKEECTKTLQLGVSVVGGYLAGILCAVVSHPADNLVSFLNSSKGATAADAVKKLGLWGMCTRGLPLRILMVGTLTGAQWGIYDAFKVSVGLSKIDRTLDSLLEKQGKPSKRELK