AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75023


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75023.t1 MTR_6g090070 94.048 252 14 1 1 251 1 252 2.71e-170 469
MS.gene75023.t1 MTR_8g046260 58.216 213 89 0 39 251 47 259 2.63e-87 260
MS.gene75023.t1 MTR_8g014640 49.065 214 107 2 39 251 52 264 8.36e-73 223
MS.gene75023.t1 MTR_8g014650 49.065 214 107 2 39 251 49 261 6.45e-70 216
MS.gene75023.t1 MTR_8g013090 41.558 231 134 1 21 250 19 249 3.05e-63 198
MS.gene75023.t1 MTR_1g045120 41.204 216 126 1 37 251 39 254 1.03e-60 192
MS.gene75023.t1 MTR_1g073610 37.154 253 149 5 4 251 6 253 2.00e-57 183
MS.gene75023.t1 MTR_8g006690 44.954 218 113 3 41 251 70 287 2.19e-57 184
MS.gene75023.t1 MTR_8g006600 44.954 218 113 3 41 251 70 287 2.19e-57 184
MS.gene75023.t1 MTR_8g005420 44.954 218 113 3 41 251 70 287 2.19e-57 184
MS.gene75023.t1 MTR_8g005420 42.500 160 85 3 41 193 70 229 2.61e-33 120
MS.gene75023.t1 MTR_8g006575 42.500 160 85 3 41 193 70 229 2.71e-33 121
MS.gene75023.t1 MTR_8g005410 45.113 133 69 2 123 251 20 152 6.27e-33 117
MS.gene75023.t1 MTR_8g005420 42.500 160 85 3 41 193 70 229 9.00e-33 121
MS.gene75023.t1 MTR_8g005420 42.500 160 85 3 41 193 70 229 2.65e-32 121
MS.gene75023.t1 MTR_8g005420 55.556 54 24 0 198 251 296 349 8.55e-14 70.5
MS.gene75023.t1 MTR_8g013075 44.615 130 71 1 122 250 23 152 4.73e-30 110
MS.gene75023.t1 MTR_8g013080 44.615 130 71 1 122 250 23 152 4.73e-30 110
MS.gene75023.t1 MTR_7g103500 50.000 104 51 1 125 227 40 143 1.18e-27 104
MS.gene75023.t1 MTR_8g466410 44.330 97 50 2 39 132 50 145 4.05e-23 92.4
MS.gene75023.t1 MTR_3g070090 28.151 238 165 4 7 244 58 289 2.53e-20 88.2
MS.gene75023.t1 MTR_5g081740 26.761 213 145 3 37 247 84 287 4.86e-18 81.6
MS.gene75023.t1 MTR_8g046230 46.377 69 37 0 125 193 29 97 1.38e-15 70.5
MS.gene75023.t1 MTR_5g081740 28.025 157 104 2 37 193 84 231 3.09e-13 67.8
MS.gene75023.t1 MTR_5g081740 28.025 157 104 2 37 193 84 231 3.45e-13 67.4
MS.gene75023.t1 MTR_8g466390 53.846 52 24 0 198 249 16 67 3.74e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75023.t1 AT4G29260 57.143 238 99 2 13 250 20 254 4.56e-96 282
MS.gene75023.t1 AT4G29270 53.629 248 110 2 4 251 14 256 1.66e-94 278
MS.gene75023.t1 AT4G25150 53.521 213 99 0 38 250 47 259 1.88e-84 253
MS.gene75023.t1 AT5G51260 47.809 251 122 1 9 250 6 256 1.32e-83 250
MS.gene75023.t1 AT2G38600 42.629 251 142 2 1 250 1 250 1.42e-69 214
MS.gene75023.t1 AT2G38600 42.629 251 142 2 1 250 1 250 1.42e-69 214
MS.gene75023.t1 AT1G04040 43.636 220 116 3 38 251 54 271 6.07e-62 196
MS.gene75023.t1 AT5G44020 43.946 223 111 3 38 251 55 272 5.06e-61 193
MS.gene75023.t1 AT5G51260 42.784 194 102 1 9 193 6 199 2.83e-54 174
MS.gene75023.t1 AT5G24770 37.727 220 133 4 33 250 46 263 2.66e-47 158
MS.gene75023.t1 AT5G24780 36.916 214 131 4 39 250 57 268 1.06e-44 151
MS.gene75023.t1 AT5G24770 36.810 163 101 2 33 193 46 208 1.11e-32 119
MS.gene75023.t1 AT5G24780 35.669 157 99 2 39 193 57 213 1.88e-30 113
MS.gene75023.t1 AT2G39920 23.387 248 156 6 7 248 54 273 9.93e-12 63.9
MS.gene75023.t1 AT2G39920 23.387 248 157 6 7 248 54 274 3.00e-11 62.4
MS.gene75023.t1 AT2G39920 23.387 248 157 6 7 248 54 274 3.00e-11 62.4
MS.gene75023.t1 AT2G39920 23.387 248 157 6 7 248 54 274 3.00e-11 62.4

Find 82 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGCAGGGTACAGAAAT+TGG 0.195305 6.3:+83034960 MS.gene75023:CDS
TATTATCAAGATGTTGGATT+TGG 0.260039 6.3:+83032560 MS.gene75023:CDS
GTGGTGATGGTAGGGATGCT+TGG 0.270118 6.3:+83032498 MS.gene75023:CDS
CTATAGAAAGCTTCAAGAAT+TGG 0.298535 6.3:+83034871 MS.gene75023:CDS
GAAGCAAACCTTCTATTTGC+AGG 0.325914 6.3:+83034947 MS.gene75023:CDS
TTCTGTACCCTGCAAATAGA+AGG 0.336018 6.3:-83034955 None:intergenic
ATGAGACATCCTTCAATGAT+TGG 0.348566 6.3:+83034804 MS.gene75023:CDS
GCAATAAAATACATCGGATT+CGG 0.350638 6.3:-83035655 None:intergenic
CGGATGGTTTGTGTTGAGAT+GGG 0.365136 6.3:-83032272 None:intergenic
ATTATCAAGATGTTGGATTT+GGG 0.370529 6.3:+83032561 MS.gene75023:CDS
TATAGAAAGCTTCAAGAATT+GGG 0.370887 6.3:+83034872 MS.gene75023:CDS
TGACGGTTGGTGGTGATGGT+AGG 0.390241 6.3:+83032489 MS.gene75023:CDS
CAATAAAATACATCGGATTC+GGG 0.407691 6.3:-83035654 None:intergenic
ATTTGCAGGGTACAGAAATT+GGG 0.415081 6.3:+83034961 MS.gene75023:CDS
TTCACTATATTTCTCTTGAC+TGG 0.422246 6.3:+83034896 MS.gene75023:CDS
GCGGATGGTTTGTGTTGAGA+TGG 0.427364 6.3:-83032273 None:intergenic
CTCAAACTGGCAGGTAAAGC+TGG 0.428025 6.3:-83034845 None:intergenic
TGGTGATGGTAGGGATGCTT+GGG 0.432736 6.3:+83032499 MS.gene75023:CDS
AACAGAGGCGCTTCTGATCA+AGG 0.443646 6.3:+83035499 MS.gene75023:intron
ATTGATCTCCGGAGCTTCCA+TGG 0.457548 6.3:-83035585 None:intergenic
AATCCAACATCTTGATAATA+CGG 0.457939 6.3:-83032557 None:intergenic
GAAGAGGAGGATTGTAAGCC+GGG 0.467135 6.3:-83032228 None:intergenic
ATGAAGGTTCGGAGGGGAGG+CGG 0.467966 6.3:-83032292 None:intergenic
TGAGACATCCTTCAATGATT+GGG 0.468359 6.3:+83034805 MS.gene75023:CDS
GAAGAGATGTGTGGAGTTTG+TGG 0.470043 6.3:+83032388 MS.gene75023:CDS
TCTCCAGCTGTCGCAGTATG+AGG 0.472536 6.3:-83032321 None:intergenic
AAACGAACAACGTCGGAGAA+TGG 0.476433 6.3:+83032354 MS.gene75023:CDS
TGAGATGGATTGTGAGGTGG+TGG 0.477904 6.3:+83032436 MS.gene75023:CDS
ATTGGGAGAGACTCATCTTA+AGG 0.482164 6.3:+83034978 MS.gene75023:CDS
GGTGTGACGGTTGGTGGTGA+TGG 0.485556 6.3:+83032485 MS.gene75023:CDS
TACAGAATCCATGGAAGCTC+CGG 0.485826 6.3:+83035577 MS.gene75023:CDS
GAGATCAATGGAGTGATTTG+TGG 0.489764 6.3:+83035599 MS.gene75023:CDS
TGAGGTGGAGAATGAAGGTT+CGG 0.491283 6.3:-83032303 None:intergenic
ACAAACTCCACACATCTCTT+CGG 0.492260 6.3:-83032386 None:intergenic
GACGGTTGGTGGTGATGGTA+GGG 0.492809 6.3:+83032490 MS.gene75023:CDS
GCGAAAGGTGTGACGGTTGG+TGG 0.493522 6.3:+83032479 MS.gene75023:CDS
CTTTCTATAGAAACTCAAAC+TGG 0.494167 6.3:-83034858 None:intergenic
AGATCAATGGAGTGATTTGT+GGG 0.501247 6.3:+83035600 MS.gene75023:CDS
CCACCTCATACTGCGACAGC+TGG 0.503575 6.3:+83032318 MS.gene75023:CDS
GTGCCGTATTATCAAGATGT+TGG 0.504430 6.3:+83032554 MS.gene75023:CDS
CGGCGATGGAAACCGTCGCC+CGG 0.506039 6.3:+83032210 None:intergenic
GTGGAGAATGAAGGTTCGGA+GGG 0.506528 6.3:-83032299 None:intergenic
ATGGAAGCTCCGGAGATCAA+TGG 0.520805 6.3:+83035587 MS.gene75023:CDS
ATGAGGAGATGATGAAGAGG+AGG 0.523968 6.3:-83032241 None:intergenic
AGATGGATTGTGAGGTGGTG+GGG 0.528294 6.3:+83032438 MS.gene75023:CDS
CTATAGAAACTCAAACTGGC+AGG 0.535607 6.3:-83034854 None:intergenic
CAGTATGAGGTGGAGAATGA+AGG 0.542531 6.3:-83032308 None:intergenic
GATTCGGGAGTTTAAAAGAC+CGG 0.545316 6.3:-83035639 None:intergenic
CAAATCACTCCATTGATCTC+CGG 0.546234 6.3:-83035596 None:intergenic
AGGTTCGGAGGGGAGGCGGA+TGG 0.552950 6.3:-83032288 None:intergenic
AGTGAAGGCTACAGAATCCA+TGG 0.553055 6.3:+83035568 MS.gene75023:CDS
TAAGTTCACCCAATCATTGA+AGG 0.553565 6.3:-83034813 None:intergenic
TCGATGAGGAGATGATGAAG+AGG 0.553957 6.3:-83032244 None:intergenic
GGATGGTTTGTGTTGAGATG+GGG 0.555142 6.3:-83032271 None:intergenic
TGAAGAGGAGGATTGTAAGC+CGG 0.556548 6.3:-83032229 None:intergenic
GAGGATTGTAAGCCGGGCGA+CGG 0.564079 6.3:-83032222 None:intergenic
AGAATGAAGGTTCGGAGGGG+AGG 0.565022 6.3:-83032295 None:intergenic
ACAGAGGCGCTTCTGATCAA+GGG 0.566481 6.3:+83035500 MS.gene75023:intron
TGGTTTGTGTTGAGATGGGG+TGG 0.568939 6.3:-83032268 None:intergenic
CTGCGACAGCTGGAGATTAG+CGG 0.573560 6.3:+83032328 MS.gene75023:CDS
AAGCAAACCTTCTATTTGCA+GGG 0.580119 6.3:+83034948 MS.gene75023:CDS
CGACAAGAGTTGATGAGTGA+AGG 0.580906 6.3:+83035553 MS.gene75023:CDS
ATTCGGGAGTTTAAAAGACC+GGG 0.584061 6.3:-83035638 None:intergenic
GAGATGGATTGTGAGGTGGT+GGG 0.588133 6.3:+83032437 MS.gene75023:CDS
GGCAGGTAAAGCTGGTGCAT+CGG 0.602641 6.3:-83034837 None:intergenic
CCAGCTGTCGCAGTATGAGG+TGG 0.608859 6.3:-83032318 None:intergenic
TTTGCGAAAGGTGTGACGGT+TGG 0.609323 6.3:+83032476 MS.gene75023:CDS
GGTGGAGAATGAAGGTTCGG+AGG 0.612292 6.3:-83032300 None:intergenic
CGACAGCTGGAGATTAGCGG+TGG 0.622448 6.3:+83032331 MS.gene75023:CDS
GGGGTTATGCAGTATCCACC+CGG 0.631601 6.3:+83035620 MS.gene75023:CDS
TGTTAAGCAATAAAATACAT+CGG 0.634647 6.3:-83035661 None:intergenic
TTTGTGGCGGAGTATATGAT+CGG 0.640485 6.3:+83032404 MS.gene75023:CDS
TGGAGAATGAAGGTTCGGAG+GGG 0.642057 6.3:-83032298 None:intergenic
GCAGATTCCGAAGAGATGTG+TGG 0.649485 6.3:+83032379 MS.gene75023:CDS
AAAATATGAGATGGATTGTG+AGG 0.649506 6.3:+83032430 MS.gene75023:CDS
TGAGTTTGCGAAAGGTGTGA+CGG 0.667860 6.3:+83032472 MS.gene75023:CDS
CGGGAGTTTAAAAGACCGGG+TGG 0.680725 6.3:-83035635 None:intergenic
TGAGATGGGGTGGATCGATG+AGG 0.693959 6.3:-83032258 None:intergenic
GATCAATGGAGTGATTTGTG+GGG 0.696759 6.3:+83035601 MS.gene75023:CDS
ATATGAGATGGATTGTGAGG+TGG 0.699180 6.3:+83032433 MS.gene75023:CDS
GAGATGTGTGGAGTTTGTGG+CGG 0.715091 6.3:+83032391 MS.gene75023:CDS
GCGGTGGAAACGAACAACGT+CGG 0.730215 6.3:+83032347 MS.gene75023:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGTTTAGTTAAAAA+TGG - chr6.3:83033583-83033602 None:intergenic 10.0%
!! AAATATGAACAAAATTATAA+AGG + chr6.3:83034489-83034508 MS.gene75023:intron 10.0%
!! TATATTTCAATTAATTACTT+TGG + chr6.3:83032653-83032672 MS.gene75023:intron 10.0%
!! AAAAATGGACAAATTATAAA+AGG - chr6.3:83033568-83033587 None:intergenic 15.0%
!!! ATAGTTAAGGTTTTAAATAA+CGG + chr6.3:83032848-83032867 MS.gene75023:intron 15.0%
!! AAAAGTTTGAGAAATAGTTA+AGG + chr6.3:83032835-83032854 MS.gene75023:intron 20.0%
!! AAGAGCTTATATTTATCTAA+TGG + chr6.3:83034090-83034109 MS.gene75023:intron 20.0%
!! AGACTCATAAATCTTTATAT+TGG - chr6.3:83033790-83033809 None:intergenic 20.0%
!! AGTATAACTCAAATGTTAAA+AGG + chr6.3:83033814-83033833 MS.gene75023:intron 20.0%
!! ATAAAAAAAAAAGCTCATGA+AGG - chr6.3:83034039-83034058 None:intergenic 20.0%
!! ATGAATGAATAAAAATCCAA+CGG - chr6.3:83032602-83032621 None:intergenic 20.0%
!! TAGGAATAATATAATCGTAA+TGG + chr6.3:83034387-83034406 MS.gene75023:intron 20.0%
!! TAGTTTATATCAATAATCAC+TGG + chr6.3:83034435-83034454 MS.gene75023:intron 20.0%
!! TATCTCAAAAAACATTGAAT+AGG - chr6.3:83032635-83032654 None:intergenic 20.0%
!! TCAATATATGTTTCATATCA+AGG - chr6.3:83033973-83033992 None:intergenic 20.0%
!! TGATTAGTATAACAAACTTA+CGG - chr6.3:83032741-83032760 None:intergenic 20.0%
!! TTAAGGTACATAAAAATTGT+TGG + chr6.3:83034995-83035014 MS.gene75023:intron 20.0%
!! TTATGTTCACTTTGTAAAAA+CGG + chr6.3:83033133-83033152 MS.gene75023:intron 20.0%
!!! AATTTTTATGTACTCTTGAT+GGG - chr6.3:83035160-83035179 None:intergenic 20.0%
!!! ATGATCAAGGTTTTAAAAAT+CGG - chr6.3:83033209-83033228 None:intergenic 20.0%
!!! GTTAAGTTTTTCTTTGTTAT+AGG + chr6.3:83035212-83035231 MS.gene75023:intron 20.0%
! AATAGAGGTTAGATTATAAG+TGG + chr6.3:83033290-83033309 MS.gene75023:intron 25.0%
! ACAAAACGTACATAATTTCA+AGG - chr6.3:83035189-83035208 None:intergenic 25.0%
! ATAAGTGGTTCAATAAATGA+TGG + chr6.3:83033305-83033324 MS.gene75023:intron 25.0%
! ATATATGTTTCATATCAAGG+TGG - chr6.3:83033970-83033989 None:intergenic 25.0%
! ATTATCAAGATGTTGGATTT+GGG + chr6.3:83032561-83032580 MS.gene75023:CDS 25.0%
! TAACTCAAATGTTAAAAGGA+TGG + chr6.3:83033818-83033837 MS.gene75023:intron 25.0%
! TATAGAAAGCTTCAAGAATT+GGG + chr6.3:83034872-83034891 MS.gene75023:CDS 25.0%
! TATTATCAAGATGTTGGATT+TGG + chr6.3:83032560-83032579 MS.gene75023:CDS 25.0%
! TATTCATCAATGACTTCATA+AGG - chr6.3:83034673-83034692 None:intergenic 25.0%
! TTAAACAAGGACAATAAACA+AGG + chr6.3:83032780-83032799 MS.gene75023:intron 25.0%
! TTACTTTGGTTATATTAGTC+AGG + chr6.3:83032667-83032686 MS.gene75023:intron 25.0%
! TTTGGATAAGTTCATTATGA+GGG + chr6.3:83034732-83034751 MS.gene75023:intron 25.0%
!! AATCCAACATCTTGATAATA+CGG - chr6.3:83032560-83032579 None:intergenic 25.0%
!! CAAGAGTACATAAAAATTGT+TGG + chr6.3:83035162-83035181 MS.gene75023:intron 25.0%
!! CAATTTTTATGTACTCTTGA+TGG - chr6.3:83035161-83035180 None:intergenic 25.0%
!! TCTAGGAGTATATGTATTTA+GGG + chr6.3:83033531-83033550 MS.gene75023:intron 25.0%
!!! TAGTGTTTTTTTTTTACTCC+TGG - chr6.3:83033407-83033426 None:intergenic 25.0%
!!! TTTTTTTTTTACTCCTGGTA+AGG - chr6.3:83033402-83033421 None:intergenic 25.0%
AAACTCATTATGTGTCTCTT+AGG + chr6.3:83035131-83035150 MS.gene75023:intron 30.0%
AAATACATATACTCCTAGAG+TGG - chr6.3:83033530-83033549 None:intergenic 30.0%
AAATTCGTTAGACAAAGGTT+AGG + chr6.3:83034368-83034387 MS.gene75023:intron 30.0%
AATGAAATGACATATGAGCA+TGG + chr6.3:83034517-83034536 MS.gene75023:intron 30.0%
ACATTATATATGCTGGAATG+TGG + chr6.3:83033845-83033864 MS.gene75023:intron 30.0%
ACGAACAATGACATTAAACA+AGG + chr6.3:83032767-83032786 MS.gene75023:intron 30.0%
AGCTTATTCATACACTATTC+TGG + chr6.3:83034126-83034145 MS.gene75023:intron 30.0%
AGTACAGAAGTGAAAAATTG+CGG + chr6.3:83033636-83033655 MS.gene75023:intron 30.0%
AGTTCTTTGCAATTTAACAG+AGG + chr6.3:83035484-83035503 MS.gene75023:intron 30.0%
ATAATCTAACCTCTATTGCA+AGG - chr6.3:83033287-83033306 None:intergenic 30.0%
CAATAAAATACATCGGATTC+GGG - chr6.3:83035657-83035676 None:intergenic 30.0%
CATTATATATGCTGGAATGT+GGG + chr6.3:83033846-83033865 MS.gene75023:intron 30.0%
CTATAGAAAGCTTCAAGAAT+TGG + chr6.3:83034871-83034890 MS.gene75023:CDS 30.0%
CTTTCTATAGAAACTCAAAC+TGG - chr6.3:83034861-83034880 None:intergenic 30.0%
CTTTGGATAAGTTCATTATG+AGG + chr6.3:83034731-83034750 MS.gene75023:intron 30.0%
CTTTGTAAAAACGGTAATGT+CGG + chr6.3:83033142-83033161 MS.gene75023:intron 30.0%
GAATGAAATTCGTTAGACAA+AGG + chr6.3:83034363-83034382 MS.gene75023:intron 30.0%
GCAATAAAATACATCGGATT+CGG - chr6.3:83035658-83035677 None:intergenic 30.0%
GTATAGAAGTGGAGAATTAT+GGG - chr6.3:83033878-83033897 None:intergenic 30.0%
TCAAATGTTAAAAGGATGGA+GGG + chr6.3:83033822-83033841 MS.gene75023:intron 30.0%
TGTATAGAAGTGGAGAATTA+TGG - chr6.3:83033879-83033898 None:intergenic 30.0%
TTATTTCACACTCTGATGTT+TGG + chr6.3:83034759-83034778 MS.gene75023:intron 30.0%
TTCACTATATTTCTCTTGAC+TGG + chr6.3:83034896-83034915 MS.gene75023:CDS 30.0%
! CTCTAGGAGTATATGTATTT+AGG + chr6.3:83033530-83033549 MS.gene75023:intron 30.0%
! TATCCATATTGTTAGCTTAC+AGG - chr6.3:83033332-83033351 None:intergenic 30.0%
! TTATATTGGTGATCACTGAT+TGG - chr6.3:83033776-83033795 None:intergenic 30.0%
!! AAAATATGAGATGGATTGTG+AGG + chr6.3:83032430-83032449 MS.gene75023:CDS 30.0%
!!! GTCATGAATGACATTTTTTG+CGG + chr6.3:83033065-83033084 MS.gene75023:intron 30.0%
AAGCAAACCTTCTATTTGCA+GGG + chr6.3:83034948-83034967 MS.gene75023:CDS 35.0%
ACATGCTAAGTGTATAGAAG+TGG - chr6.3:83033889-83033908 None:intergenic 35.0%
ACTAATAACAGTACCACTCT+AGG + chr6.3:83033514-83033533 MS.gene75023:intron 35.0%
AGGACTACTTTCATCAACAA+AGG - chr6.3:83034286-83034305 None:intergenic 35.0%
ATCCAGTATCAAATAGTCTG+AGG - chr6.3:83034311-83034330 None:intergenic 35.0%
ATGAGACATCCTTCAATGAT+TGG + chr6.3:83034804-83034823 MS.gene75023:CDS 35.0%
ATTGAAGATTTCTGACCTGT+TGG - chr6.3:83034786-83034805 None:intergenic 35.0%
ATTTGCAGGGTACAGAAATT+GGG + chr6.3:83034961-83034980 MS.gene75023:CDS 35.0%
CAATGAGTATGCGAAAATCA+CGG + chr6.3:83033920-83033939 MS.gene75023:intron 35.0%
CTATACACTTAGCATGTGTT+TGG + chr6.3:83033892-83033911 MS.gene75023:intron 35.0%
CTCAAATGTTAAAAGGATGG+AGG + chr6.3:83033821-83033840 MS.gene75023:intron 35.0%
CTGTAAAACACAAAGCTGAT+TGG - chr6.3:83035327-83035346 None:intergenic 35.0%
CTTCTCGACGTGAATAATAT+TGG - chr6.3:83033493-83033512 None:intergenic 35.0%
GATCGGAGAAAAATATGAGA+TGG + chr6.3:83032421-83032440 MS.gene75023:CDS 35.0%
GGACTACTTTCATCAACAAA+GGG - chr6.3:83034285-83034304 None:intergenic 35.0%
TAAGTTCACCCAATCATTGA+AGG - chr6.3:83034816-83034835 None:intergenic 35.0%
TATCCAAAGACACTTCTTGT+AGG - chr6.3:83034720-83034739 None:intergenic 35.0%
TATTTGCAGGGTACAGAAAT+TGG + chr6.3:83034960-83034979 MS.gene75023:CDS 35.0%
TCATCAACAAAGGGACATTA+GGG - chr6.3:83034276-83034295 None:intergenic 35.0%
TCTGGAGATCTTATTGTATG+TGG + chr6.3:83034144-83034163 MS.gene75023:intron 35.0%
TGAGACATCCTTCAATGATT+GGG + chr6.3:83034805-83034824 MS.gene75023:CDS 35.0%
TTCATCAACAAAGGGACATT+AGG - chr6.3:83034277-83034296 None:intergenic 35.0%
! AGATCAATGGAGTGATTTGT+GGG + chr6.3:83035600-83035619 MS.gene75023:CDS 35.0%
! CGTATAGGATTTTGCGATTT+CGG + chr6.3:83032880-83032899 MS.gene75023:intron 35.0%
! TTTTCTGATGAGTTTGCGAA+AGG + chr6.3:83032464-83032483 MS.gene75023:CDS 35.0%
!! CAATCAGCTTTGTGTTTTAC+AGG + chr6.3:83035325-83035344 MS.gene75023:intron 35.0%
!!! ACACTGAACGAGTTTTAAGA+GGG - chr6.3:83035406-83035425 None:intergenic 35.0%
!!! AGCTCTAGAGTTCAAACTTT+TGG - chr6.3:83035103-83035122 None:intergenic 35.0%
!!! GCTACCTATAATTTTTTGCG+CGG + chr6.3:83033164-83033183 MS.gene75023:intron 35.0%
AAACTCGTTCAGTGTCTCTT+AGG + chr6.3:83035411-83035430 MS.gene75023:intron 40.0%
AAGGCCGCGCAAAAAATTAT+AGG - chr6.3:83033171-83033190 None:intergenic 40.0%
ACAAACTCCACACATCTCTT+CGG - chr6.3:83032389-83032408 None:intergenic 40.0%
ACTTCTGCGTAAAACTCTTC+CGG + chr6.3:83035287-83035306 MS.gene75023:intron 40.0%
ATGATTGTTGCAGTTGTTGC+AGG + chr6.3:83032922-83032941 MS.gene75023:intron 40.0%
ATTCGGGAGTTTAAAAGACC+GGG - chr6.3:83035641-83035660 None:intergenic 40.0%
ATTGGGAGAGACTCATCTTA+AGG + chr6.3:83034978-83034997 MS.gene75023:CDS 40.0%
CAAATCACTCCATTGATCTC+CGG - chr6.3:83035599-83035618 None:intergenic 40.0%
CAACACGACACTTATGATCA+AGG - chr6.3:83033222-83033241 None:intergenic 40.0%
CAAGTCCTTATGCATACTTG+TGG + chr6.3:83034639-83034658 MS.gene75023:intron 40.0%
CACCTCAGACTATTTGATAC+TGG + chr6.3:83034306-83034325 MS.gene75023:intron 40.0%
CTATAGAAACTCAAACTGGC+AGG - chr6.3:83034857-83034876 None:intergenic 40.0%
GAAGCAAACCTTCTATTTGC+AGG + chr6.3:83034947-83034966 MS.gene75023:CDS 40.0%
GAGATCAATGGAGTGATTTG+TGG + chr6.3:83035599-83035618 MS.gene75023:CDS 40.0%
GATTCGGGAGTTTAAAAGAC+CGG - chr6.3:83035642-83035661 None:intergenic 40.0%
GGTCCTGTAAGCTAACAATA+TGG + chr6.3:83033326-83033345 MS.gene75023:intron 40.0%
GTGCCGTATTATCAAGATGT+TGG + chr6.3:83032554-83032573 MS.gene75023:CDS 40.0%
TAACAAAACACGTCCCAAGT+AGG - chr6.3:83035452-83035471 None:intergenic 40.0%
TCATGCCACAAGTATGCATA+AGG - chr6.3:83034647-83034666 None:intergenic 40.0%
TCCAGACAAAAAACCTTACC+AGG + chr6.3:83033386-83033405 MS.gene75023:intron 40.0%
TGATTGTTGCAGTTGTTGCA+GGG + chr6.3:83032923-83032942 MS.gene75023:intron 40.0%
TGGAGGGACATTATATATGC+TGG + chr6.3:83033838-83033857 MS.gene75023:intron 40.0%
TGGATATGTCAGAATCACAG+TGG - chr6.3:83033950-83033969 None:intergenic 40.0%
TTCTGTACCCTGCAAATAGA+AGG - chr6.3:83034958-83034977 None:intergenic 40.0%
! AAACTCTTCCGGTTTGTCTT+AGG + chr6.3:83035298-83035317 MS.gene75023:intron 40.0%
! AGAGTTTTACGCAGAAGTCT+TGG - chr6.3:83035285-83035304 None:intergenic 40.0%
! ATTGGTGACCTAAGACAAAC+CGG - chr6.3:83035309-83035328 None:intergenic 40.0%
! CTTGATCATAAGTGTCGTGT+TGG + chr6.3:83033220-83033239 MS.gene75023:intron 40.0%
! GATCAATGGAGTGATTTGTG+GGG + chr6.3:83035601-83035620 MS.gene75023:CDS 40.0%
! GCAAGGACACTTCTAGTTAA+AGG - chr6.3:83033270-83033289 None:intergenic 40.0%
! GTATCAAATAGTCTGAGGTG+AGG - chr6.3:83034306-83034325 None:intergenic 40.0%
! TTCTAGTTAAAGGTGTGACC+CGG - chr6.3:83033260-83033279 None:intergenic 40.0%
! TTTGTGGCGGAGTATATGAT+CGG + chr6.3:83032404-83032423 MS.gene75023:CDS 40.0%
! TTTTGCGATTTCGGCTGTTA+TGG + chr6.3:83032889-83032908 MS.gene75023:intron 40.0%
!! ATATGAGATGGATTGTGAGG+TGG + chr6.3:83032433-83032452 MS.gene75023:CDS 40.0%
!! GTGTTTTGTTGCGACTGTAA+CGG + chr6.3:83033096-83033115 MS.gene75023:intron 40.0%
!! TAGAAGTGTCCTTGCAATAG+AGG + chr6.3:83033275-83033294 MS.gene75023:intron 40.0%
!! TAGCCTACAAGAAGTGTCTT+TGG + chr6.3:83034714-83034733 MS.gene75023:intron 40.0%
!!! AAGGTTTTAAATAACGGCCG+CGG + chr6.3:83032854-83032873 MS.gene75023:intron 40.0%
!!! GACACTGAACGAGTTTTAAG+AGG - chr6.3:83035407-83035426 None:intergenic 40.0%
!!! GACATTTTTTGCGGTCGTAA+TGG + chr6.3:83033074-83033093 MS.gene75023:intron 40.0%
!!! GTATGTGCTTTTTTAGCCGT+TGG + chr6.3:83032583-83032602 MS.gene75023:intron 40.0%
!!! TCCTGGTAAGGTTTTTTGTC+TGG - chr6.3:83033390-83033409 None:intergenic 40.0%
AAACGAACAACGTCGGAGAA+TGG + chr6.3:83032354-83032373 MS.gene75023:CDS 45.0%
ACTCTGATGTTTGGACCAAC+AGG + chr6.3:83034768-83034787 MS.gene75023:intron 45.0%
AGTGAAGGCTACAGAATCCA+TGG + chr6.3:83035568-83035587 MS.gene75023:CDS 45.0%
ATGAGGAGATGATGAAGAGG+AGG - chr6.3:83032244-83032263 None:intergenic 45.0%
CAGTATGAGGTGGAGAATGA+AGG - chr6.3:83032311-83032330 None:intergenic 45.0%
GAAGAGATGTGTGGAGTTTG+TGG + chr6.3:83032388-83032407 MS.gene75023:CDS 45.0%
TACAGAATCCATGGAAGCTC+CGG + chr6.3:83035577-83035596 MS.gene75023:CDS 45.0%
TCGATGAGGAGATGATGAAG+AGG - chr6.3:83032247-83032266 None:intergenic 45.0%
TCGGTCCGTTATCGAGAAAA+AGG - chr6.3:83033190-83033209 None:intergenic 45.0%
TGAAGAGGAGGATTGTAAGC+CGG - chr6.3:83032232-83032251 None:intergenic 45.0%
TGAGGTGGAGAATGAAGGTT+CGG - chr6.3:83032306-83032325 None:intergenic 45.0%
! CGGATGGTTTGTGTTGAGAT+GGG - chr6.3:83032275-83032294 None:intergenic 45.0%
! GGATGGTTTGTGTTGAGATG+GGG - chr6.3:83032274-83032293 None:intergenic 45.0%
! TGAGTTTGCGAAAGGTGTGA+CGG + chr6.3:83032472-83032491 MS.gene75023:CDS 45.0%
!! CGACAAGAGTTGATGAGTGA+AGG + chr6.3:83035553-83035572 MS.gene75023:CDS 45.0%
!!! TAATATTTTTTTTTTTGAAT+CGG + chr6.3:83033467-83033486 MS.gene75023:intron 5.0%
ACCAACCGAGCTTCCTACTT+GGG + chr6.3:83035436-83035455 MS.gene75023:intron 50.0%
ATGGAAGCTCCGGAGATCAA+TGG + chr6.3:83035587-83035606 MS.gene75023:CDS 50.0%
ATTGATCTCCGGAGCTTCCA+TGG - chr6.3:83035588-83035607 None:intergenic 50.0%
CAAAATCCTATACGCGACCG+CGG - chr6.3:83032874-83032893 None:intergenic 50.0%
CTCAAACTGGCAGGTAAAGC+TGG - chr6.3:83034848-83034867 None:intergenic 50.0%
GAAGAGGAGGATTGTAAGCC+GGG - chr6.3:83032231-83032250 None:intergenic 50.0%
GAGATGTGTGGAGTTTGTGG+CGG + chr6.3:83032391-83032410 MS.gene75023:CDS 50.0%
GCAGATTCCGAAGAGATGTG+TGG + chr6.3:83032379-83032398 MS.gene75023:CDS 50.0%
GTGGAGAATGAAGGTTCGGA+GGG - chr6.3:83032302-83032321 None:intergenic 50.0%
TGGAGAATGAAGGTTCGGAG+GGG - chr6.3:83032301-83032320 None:intergenic 50.0%
! CGCGGCCTTTTTCTCGATAA+CGG + chr6.3:83033182-83033201 MS.gene75023:intron 50.0%
! GCGGATGGTTTGTGTTGAGA+TGG - chr6.3:83032276-83032295 None:intergenic 50.0%
! TGGTTTGTGTTGAGATGGGG+TGG - chr6.3:83032271-83032290 None:intergenic 50.0%
! TTTGCGAAAGGTGTGACGGT+TGG + chr6.3:83032476-83032495 MS.gene75023:CDS 50.0%
!! AACAGAGGCGCTTCTGATCA+AGG + chr6.3:83035499-83035518 MS.gene75023:intron 50.0%
!! ACAGAGGCGCTTCTGATCAA+GGG + chr6.3:83035500-83035519 MS.gene75023:intron 50.0%
!! AGATGGATTGTGAGGTGGTG+GGG + chr6.3:83032438-83032457 MS.gene75023:CDS 50.0%
!! GAGATGGATTGTGAGGTGGT+GGG + chr6.3:83032437-83032456 MS.gene75023:CDS 50.0%
!! TGAGATGGATTGTGAGGTGG+TGG + chr6.3:83032436-83032455 MS.gene75023:CDS 50.0%
!! TGGTGATGGTAGGGATGCTT+GGG + chr6.3:83032499-83032518 MS.gene75023:CDS 50.0%
AGAATGAAGGTTCGGAGGGG+AGG - chr6.3:83032298-83032317 None:intergenic 55.0%
CAAGTAGGAAGCTCGGTTGG+TGG - chr6.3:83035437-83035456 None:intergenic 55.0%
CACCAACCGAGCTTCCTACT+TGG + chr6.3:83035435-83035454 MS.gene75023:intron 55.0%
CACGTCCCAAGTAGGAAGCT+CGG - chr6.3:83035444-83035463 None:intergenic 55.0%
CGGGAGTTTAAAAGACCGGG+TGG - chr6.3:83035638-83035657 None:intergenic 55.0%
CTGCGACAGCTGGAGATTAG+CGG + chr6.3:83032328-83032347 MS.gene75023:CDS 55.0%
GCGGTGGAAACGAACAACGT+CGG + chr6.3:83032347-83032366 MS.gene75023:CDS 55.0%
GGCAGGTAAAGCTGGTGCAT+CGG - chr6.3:83034840-83034859 None:intergenic 55.0%
GGGGTTATGCAGTATCCACC+CGG + chr6.3:83035620-83035639 MS.gene75023:CDS 55.0%
GGTGGAGAATGAAGGTTCGG+AGG - chr6.3:83032303-83032322 None:intergenic 55.0%
GTGTCGTGTTGGACACGTGT+CGG + chr6.3:83033231-83033250 MS.gene75023:intron 55.0%
TCCCAAGTAGGAAGCTCGGT+TGG - chr6.3:83035440-83035459 None:intergenic 55.0%
TCTCCAGCTGTCGCAGTATG+AGG - chr6.3:83032324-83032343 None:intergenic 55.0%
TGAGATGGGGTGGATCGATG+AGG - chr6.3:83032261-83032280 None:intergenic 55.0%
!! GACGGTTGGTGGTGATGGTA+GGG + chr6.3:83032490-83032509 MS.gene75023:CDS 55.0%
!! GTGGTGATGGTAGGGATGCT+TGG + chr6.3:83032498-83032517 MS.gene75023:CDS 55.0%
!! TGACGGTTGGTGGTGATGGT+AGG + chr6.3:83032489-83032508 MS.gene75023:CDS 55.0%
ATGAAGGTTCGGAGGGGAGG+CGG - chr6.3:83032295-83032314 None:intergenic 60.0%
CCACCTCATACTGCGACAGC+TGG + chr6.3:83032318-83032337 MS.gene75023:CDS 60.0%
CCAGCTGTCGCAGTATGAGG+TGG - chr6.3:83032321-83032340 None:intergenic 60.0%
CGACAGCTGGAGATTAGCGG+TGG + chr6.3:83032331-83032350 MS.gene75023:CDS 60.0%
GAGGATTGTAAGCCGGGCGA+CGG - chr6.3:83032225-83032244 None:intergenic 60.0%
! GCGAAAGGTGTGACGGTTGG+TGG + chr6.3:83032479-83032498 MS.gene75023:CDS 60.0%
! GTTGGACACGTGTCGGTGAC+CGG + chr6.3:83033238-83033257 MS.gene75023:intron 60.0%
! TTGGACACGTGTCGGTGACC+GGG + chr6.3:83033239-83033258 MS.gene75023:intron 60.0%
!! GGTGTGACGGTTGGTGGTGA+TGG + chr6.3:83032485-83032504 MS.gene75023:CDS 60.0%
TAACGGCCGCGGTCGCGTAT+AGG + chr6.3:83032865-83032884 MS.gene75023:intron 65.0%
AGGTTCGGAGGGGAGGCGGA+TGG - chr6.3:83032291-83032310 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 83032215 83035681 83032215 ID=MS.gene75023
chr6.3 mRNA 83032215 83035681 83032215 ID=MS.gene75023.t1;Parent=MS.gene75023
chr6.3 exon 83032215 83032582 83032215 ID=MS.gene75023.t1.exon1;Parent=MS.gene75023.t1
chr6.3 CDS 83032215 83032582 83032215 ID=cds.MS.gene75023.t1;Parent=MS.gene75023.t1
chr6.3 exon 83034790 83034999 83034790 ID=MS.gene75023.t1.exon2;Parent=MS.gene75023.t1
chr6.3 CDS 83034790 83034999 83034790 ID=cds.MS.gene75023.t1;Parent=MS.gene75023.t1
chr6.3 exon 83035504 83035681 83035504 ID=MS.gene75023.t1.exon3;Parent=MS.gene75023.t1
chr6.3 CDS 83035504 83035681 83035504 ID=cds.MS.gene75023.t1;Parent=MS.gene75023.t1
Gene Sequence

>MS.gene75023

ATGGAAACCGTCGCCCGGCTTACAATCCTCCTCTTCATCATCTCCTCATCGATCCACCCCATCTCAACACAAACCATCCGCCTCCCCTCCGAACCTTCATTCTCCACCTCATACTGCGACAGCTGGAGATTAGCGGTGGAAACGAACAACGTCGGAGAATGGAAGCAGATTCCGAAGAGATGTGTGGAGTTTGTGGCGGAGTATATGATCGGAGAAAAATATGAGATGGATTGTGAGGTGGTGGGGAAATTTTCTGATGAGTTTGCGAAAGGTGTGACGGTTGGTGGTGATGGTAGGGATGCTTGGGTGTTTGATATTGATGAAACTTTGCTTTCTAATGTGCCGTATTATCAAGATGTTGGATTTGGGTATGTGCTTTTTTAGCCGTTGGATTTTTATTCATTCATTCATTCATTTCCTATTCAATGTTTTTTGAGATATATTTCAATTAATTACTTTGGTTATATTAGTCAGGATTTTTAGTTCATGTAATTATGCAATTATAATGCTTTTGTTTTCATTTCCGTAAGTTTGTTATACTAATCATGAAGCACGAACAATGACATTAAACAAGGACAATAAACAAGGACATTAAACACGATAGTGACACTGACATCAATAAAAGTTTGAGAAATAGTTAAGGTTTTAAATAACGGCCGCGGTCGCGTATAGGATTTTGCGATTTCGGCTGTTATGGATATTGTGTTATGATTGTTGCAGTTGTTGCAGGGTGTGAATTAATTACAACATTGCACAACTCTTAAACAAAGATAGTAACATAAATAACTTAAACTAGAGATATGATTTTCATCTATCTCAATTGAAAAAATATACTGATTATGTGTCTATTGTCATGAATGACATTTTTTGCGGTCGTAATGGTGTTTTGTTGCGACTGTAACGGCGTCTCGTCGTGTTTTATGTTCACTTTGTAAAAACGGTAATGTCGGCTACCTATAATTTTTTGCGCGGCCTTTTTCTCGATAACGGACCGATTTTTAAAACCTTGATCATAAGTGTCGTGTTGGACACGTGTCGGTGACCGGGTCACACCTTTAACTAGAAGTGTCCTTGCAATAGAGGTTAGATTATAAGTGGTTCAATAAATGATGGTCCTGTAAGCTAACAATATGGATAGAAAGCAATAATTTTTGAATTTGTCGAGACTAAATCCAGACAAAAAACCTTACCAGGAGTAAAAAAAAAACACTATAATAGACTAAAATCATATTTAAACTTATTAATTATTGAGTAATATTTTTTTTTTTGAATCGGCCAATATTATTCACGTCGAGAAGTACTAATAACAGTACCACTCTAGGAGTATATGTATTTAGGGTCTATGAGTAACCTTTTATAATTTGTCCATTTTTAACTAAACATTTTTTAAAAGAGTCTAATCGCGAAATTCATACATTAGAAGTACAGAAGTGAAAAATTGCGGATTTGAATCTGCTCAAAATTATCGTATGTCTTTGCAGCTTTTTAGCAGAGCTATGATACACTTGTTTTTCTTTGATCAGAGAGTTAATTTAACACTAATTTCATTAGTATTATTCCAATCAGTGATCACCAATATAAAGATTTATGAGTCTCGTAAGTATAACTCAAATGTTAAAAGGATGGAGGGACATTATATATGCTGGAATGTGGGTTCGAACCCATAATTCTCCACTTCTATACACTTAGCATGTGTTTGGTATCACAATGAGTATGCGAAAATCACGGTGATCCACTGTGATTCTGACATATCCACCTTGATATGAAACATATATTGAGTGAGTTTTGTCGTCATACTCTTATGAACAAAACACATATAAACCTTCATGAGCTTTTTTTTTTATTCTTTCTTCATAAATACGTGTAGAGAAGTTTAAGAGCTTATATTTATCTAATGGAAACAAGTTAAAGAGCTTATTCATACACTATTCTGGAGATCTTATTGTATGTGGAGCACAATTTATAGATATGAGTTAAGTTTTTTTTTTTAAGTGTATCAAGACATTGATACAAGTTTTTGTATCTTAAGCTAGCTTAACTAAATTTTAAGTAAACTCTCCCTAATGTCCCTTTGTTGATGAAAGTAGTCCTCACCTCAGACTATTTGATACTGGATTAAATATTCAAAGAATTTACTTGTATGATCTTGAATGAAATTCGTTAGACAAAGGTTAGGAATAATATAATCGTAATGGTTTCATGCTTAATTATTTAATTGAATAGTTTATATCAATAATCACTGGATTAAAATGAAATAATGAATAAATTGTAGTAAAATATGAACAAAATTATAAAGGTGAAGAATGAAATGACATATGAGCATGGTTTATCATCTGCTTGCTTTGTGTTTAGAAAATAGCTTATTGTGAAATTAAATGTTAGAGAAATCTTTAGTTGAAAAACTGTGATTTTGTATAAACTATTCAAGTCCTTATGCATACTTGTGGCATGAAATCCTTATGAAGTCATTGATGAATAACACTAGATATAAGTTATAACTAGCCTACAAGAAGTGTCTTTGGATAAGTTCATTATGAGGGTAACTTATTTCACACTCTGATGTTTGGACCAACAGGTCAGAAATCTTCAATGAGACATCCTTCAATGATTGGGTGAACTTAGCCGATGCACCAGCTTTACCTGCCAGTTTGAGTTTCTATAGAAAGCTTCAAGAATTGGGCTTCACTATATTTCTCTTGACTGGTAGAAGTGAGCATCAAAGAAATGTCACAGAAGCAAACCTTCTATTTGCAGGGTACAGAAATTGGGAGAGACTCATCTTAAGGTACATAAAAATTGTTGGTTCTTAGAAAATATGTATGTTGTGTTTTGTTAAACATTTTTTTATAGAGATAAATGCTAGCAAGTTAGTGTTTATGTTAGTTCCAAAAGTTTGAACTCTAGAGCTCATGCTTAAAACTCATTATGTGTCTCTTAGGTCACCCATCAAGAGTACATAAAAATTGTTGGTCCTTGAAATTATGTACGTTTTGTTTTGTTAAGTTTTTCTTTGTTATAGGTAAATGTCAATAAGTTAGCGATAATGTTAGATTCGAGAGTTTAAACTCCAAGACTTCTGCGTAAAACTCTTCCGGTTTGTCTTAGGTCACCAATCAGCTTTGTGTTTTACAGGCAAATATTAGTGAAATAGTGATTATGCTAGTTTCAAGAGTTCGAACTCTGAAACTCCCTCTTAAAACTCGTTCAGTGTCTCTTAGGCCACCAACCGAGCTTCCTACTTGGGACGTGTTTTGTTAAACTTAACATAAAGTTCTTTGCAATTTAACAGAGGCGCTTCTGATCAAGGGAAATCAGCAACTAGTTACAAGTCTGAAAAGCGACAAGAGTTGATGAGTGAAGGCTACAGAATCCATGGAAGCTCCGGAGATCAATGGAGTGATTTGTGGGGTTATGCAGTATCCACCCGGTCTTTTAAACTCCCGAATCCGATGTATTTTATTGCTTAA

Protein sequence

>MS.gene75023.t1

METVARLTILLFIISSSIHPISTQTIRLPSEPSFSTSYCDSWRLAVETNNVGEWKQIPKRCVEFVAEYMIGEKYEMDCEVVGKFSDEFAKGVTVGGDGRDAWVFDIDETLLSNVPYYQDVGFGSEIFNETSFNDWVNLADAPALPASLSFYRKLQELGFTIFLLTGRSEHQRNVTEANLLFAGYRNWERLILRGASDQGKSATSYKSEKRQELMSEGYRIHGSSGDQWSDLWGYAVSTRSFKLPNPMYFIA