Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75088.t1 | XP_003620940.1 | 95.3 | 214 | 10 | 0 | 1 | 214 | 1 | 214 | 1.30E-115 | 425.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75088.t1 | Q5TKD8 | 75.0 | 160 | 34 | 3 | 56 | 213 | 58 | 213 | 5.7e-67 | 255.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75088.t1 | G7KJV3 | 95.3 | 214 | 10 | 0 | 1 | 214 | 1 | 214 | 9.6e-116 | 425.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054343 | MS.gene75088 | 0.803669 | 3.12E-49 | -1.69E-46 |
| MS.gene057332 | MS.gene75088 | 0.804966 | 1.68E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene75088 | 0.813681 | 2.26E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene75088 | 0.818913 | 1.53E-52 | -1.69E-46 |
| MS.gene059756 | MS.gene75088 | 0.800064 | 1.72E-48 | -1.69E-46 |
| MS.gene061231 | MS.gene75088 | 0.801473 | 8.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75088.t1 | MTR_6g092700 | 95.327 | 214 | 10 | 0 | 1 | 214 | 1 | 214 | 4.27e-154 | 426 |
| MS.gene75088.t1 | MTR_3g435370 | 50.000 | 140 | 69 | 1 | 59 | 197 | 70 | 209 | 9.34e-49 | 160 |
| MS.gene75088.t1 | MTR_3g435370 | 50.000 | 140 | 69 | 1 | 59 | 197 | 70 | 209 | 1.62e-48 | 159 |
| MS.gene75088.t1 | MTR_7g085310 | 42.373 | 177 | 88 | 3 | 36 | 208 | 74 | 240 | 4.37e-43 | 146 |
| MS.gene75088.t1 | MTR_7g085310 | 45.324 | 139 | 62 | 3 | 36 | 170 | 74 | 202 | 7.37e-36 | 125 |
| MS.gene75088.t1 | MTR_1g023140 | 30.435 | 115 | 75 | 3 | 76 | 188 | 7 | 118 | 1.43e-15 | 70.5 |
| MS.gene75088.t1 | MTR_3g112410 | 29.730 | 111 | 73 | 3 | 76 | 184 | 7 | 114 | 5.27e-12 | 60.8 |
| MS.gene75088.t1 | MTR_7g080250 | 32.258 | 93 | 59 | 2 | 90 | 181 | 89 | 178 | 1.97e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75088.t1 | AT4G29670 | 74.522 | 157 | 40 | 0 | 49 | 205 | 77 | 233 | 1.67e-84 | 250 |
| MS.gene75088.t1 | AT4G26160 | 73.188 | 138 | 36 | 1 | 49 | 185 | 66 | 203 | 8.49e-74 | 223 |
| MS.gene75088.t1 | AT4G29670 | 77.778 | 126 | 28 | 0 | 49 | 174 | 77 | 202 | 7.51e-71 | 216 |
| MS.gene75088.t1 | AT2G33270 | 43.373 | 166 | 92 | 2 | 49 | 212 | 65 | 230 | 1.50e-44 | 150 |
| MS.gene75088.t1 | AT1G08570 | 46.479 | 142 | 75 | 1 | 68 | 208 | 58 | 199 | 1.04e-43 | 147 |
| MS.gene75088.t1 | AT1G08570 | 46.479 | 142 | 75 | 1 | 68 | 208 | 89 | 230 | 1.94e-43 | 147 |
| MS.gene75088.t1 | AT5G61440 | 43.836 | 146 | 80 | 2 | 54 | 197 | 62 | 207 | 2.17e-43 | 146 |
| MS.gene75088.t1 | AT1G08570 | 45.455 | 132 | 72 | 0 | 77 | 208 | 1 | 132 | 3.61e-40 | 135 |
| MS.gene75088.t1 | AT1G08570 | 45.455 | 132 | 72 | 0 | 77 | 208 | 1 | 132 | 3.61e-40 | 135 |
| MS.gene75088.t1 | AT5G61440 | 49.074 | 108 | 54 | 1 | 68 | 174 | 77 | 184 | 6.30e-35 | 122 |
| MS.gene75088.t1 | AT5G42980 | 27.928 | 111 | 75 | 3 | 76 | 184 | 6 | 113 | 1.78e-11 | 59.7 |
| MS.gene75088.t1 | AT3G02730 | 28.713 | 101 | 68 | 2 | 86 | 185 | 78 | 175 | 2.22e-11 | 60.8 |
Find 43 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGAGGAAAACAATTTC+AGG | 0.279414 | 6.3:+84037861 | None:intergenic |
| AAAACACTTGCTTCCTTTCA+AGG | 0.304706 | 6.3:-84039885 | MS.gene75088:intron |
| TGTGCAACTGTTTCGGAAAC+TGG | 0.339692 | 6.3:-84039000 | MS.gene75088:CDS |
| TCTCATCAAAATTTACTTTG+AGG | 0.360659 | 6.3:+84037847 | None:intergenic |
| TCAGGTATGTGCAACTGTTT+CGG | 0.375166 | 6.3:-84039007 | MS.gene75088:intron |
| CGGAAACTGGTCAGCCGAAA+TGG | 0.396490 | 6.3:-84038987 | MS.gene75088:CDS |
| GCCTAAGGGAATCGGTGATT+TGG | 0.399227 | 6.3:-84036850 | MS.gene75088:CDS |
| CCCTCTTGGGTGAGAGTGGC+GGG | 0.408460 | 6.3:+84039936 | None:intergenic |
| TAGAGGGGCTGAGGGGCAGC+TGG | 0.427418 | 6.3:-84037769 | MS.gene75088:CDS |
| AGAGTCTGCTGGTCTATCCT+TGG | 0.450801 | 6.3:+84036806 | None:intergenic |
| CCTCTATAAAAGTGGAAGTA+AGG | 0.454670 | 6.3:+84037786 | None:intergenic |
| GAGTCTGCTGGTCTATCCTT+GGG | 0.472914 | 6.3:+84036807 | None:intergenic |
| AGGAGATGAAAGTGGAAGAA+GGG | 0.477081 | 6.3:+84039982 | None:intergenic |
| ATGCAGCATTGGTCCGCCTA+AGG | 0.490466 | 6.3:-84036865 | MS.gene75088:CDS |
| CTTTGAGGAAAACAATTTCA+GGG | 0.490623 | 6.3:+84037862 | None:intergenic |
| ATCGAGCTGTGTTATGCGTC+TGG | 0.496931 | 6.3:+84036886 | None:intergenic |
| AGGAAGAGAGAAAACCCTCT+TGG | 0.498280 | 6.3:+84039922 | None:intergenic |
| ATTGGTCCGCCTAAGGGAAT+CGG | 0.499471 | 6.3:-84036858 | MS.gene75088:CDS |
| CCTCAGCCCCTCTATAAAAG+TGG | 0.502567 | 6.3:+84037778 | None:intergenic |
| AAGGAGATGAAAGTGGAAGA+AGG | 0.512126 | 6.3:+84039981 | None:intergenic |
| GACTATCAAACAGAGTCTGC+TGG | 0.516214 | 6.3:+84036795 | None:intergenic |
| GGAAGAGAGAAAACCCTCTT+GGG | 0.519674 | 6.3:+84039923 | None:intergenic |
| TGAAACTTCCTCTGCTCCCA+AGG | 0.533659 | 6.3:-84036823 | MS.gene75088:CDS |
| GAGGTGGAAGGAGATGAAAG+TGG | 0.533907 | 6.3:+84039974 | None:intergenic |
| AACACAGCTCGATGCAGCAT+TGG | 0.540627 | 6.3:-84036876 | MS.gene75088:CDS |
| GAGTGAATGTCAATCATGTT+TGG | 0.541674 | 6.3:+84038949 | None:intergenic |
| TGCAGCATTGGTCCGCCTAA+GGG | 0.557737 | 6.3:-84036864 | MS.gene75088:CDS |
| CGGGAGAGTATTGAAGAAAG+AGG | 0.559901 | 6.3:+84039955 | None:intergenic |
| ACCCTCTTGGGTGAGAGTGG+CGG | 0.567283 | 6.3:+84039935 | None:intergenic |
| AAAACCCTCTTGGGTGAGAG+TGG | 0.577623 | 6.3:+84039932 | None:intergenic |
| TGGTCTATCCTTGGGAGCAG+AGG | 0.581078 | 6.3:+84036815 | None:intergenic |
| CCCGCCACTCTCACCCAAGA+GGG | 0.583084 | 6.3:-84039936 | MS.gene75088:CDS |
| TTGCCGAGCATTATTCCCCA+AGG | 0.587200 | 6.3:-84038845 | MS.gene75088:intron |
| GAGAGTATTGAAGAAAGAGG+TGG | 0.588678 | 6.3:+84039958 | None:intergenic |
| GTACCTTGGGGAATAATGCT+CGG | 0.591191 | 6.3:+84038842 | None:intergenic |
| AACTGGTCAGCCGAAATGGT+GGG | 0.593234 | 6.3:-84038983 | MS.gene75088:CDS |
| AGCTGTGTTATGCGTCTGGA+TGG | 0.594097 | 6.3:+84036890 | None:intergenic |
| AAACTGGTCAGCCGAAATGG+TGG | 0.607747 | 6.3:-84038984 | MS.gene75088:CDS |
| GAATGCTTTGAGTCAAGCTG+AGG | 0.620265 | 6.3:-84038911 | MS.gene75088:CDS |
| ACCAAATCACCGATTCCCTT+AGG | 0.635937 | 6.3:+84036849 | None:intergenic |
| TCCCGCCACTCTCACCCAAG+AGG | 0.638518 | 6.3:-84039937 | MS.gene75088:CDS |
| GTATTGAAGAAAGAGGTGGA+AGG | 0.664071 | 6.3:+84039962 | None:intergenic |
| AAATCACCGATTCCCTTAGG+CGG | 0.696724 | 6.3:+84036852 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAACAATAATAAAAAG+GGG | + | chr6.3:84036989-84037008 | None:intergenic | 10.0% |
| !! | ATTAAAGCATAATTAAAAAA+AGG | + | chr6.3:84037064-84037083 | None:intergenic | 10.0% |
| !! | TTAAAGCATAATTAAAAAAA+GGG | + | chr6.3:84037063-84037082 | None:intergenic | 10.0% |
| !! | AAAATCTATTAAAACTACAT+TGG | - | chr6.3:84039431-84039450 | MS.gene75088:intron | 15.0% |
| !! | ATTACAGTTTCAAAAAATAA+AGG | - | chr6.3:84039915-84039934 | MS.gene75088:CDS | 15.0% |
| !! | TAAAGCATAATTAAAAAAAG+GGG | + | chr6.3:84037062-84037081 | None:intergenic | 15.0% |
| !! | TGTTATGAAAATAAATGATT+GGG | - | chr6.3:84038457-84038476 | MS.gene75088:intron | 15.0% |
| !!! | GTGAAATAAGTTAATTATTT+TGG | - | chr6.3:84037760-84037779 | MS.gene75088:CDS | 15.0% |
| !!! | TAGTTATTGTTGAATTTTAT+GGG | - | chr6.3:84037949-84037968 | MS.gene75088:intron | 15.0% |
| !!! | TGAATAGAATATTTTTATTC+AGG | + | chr6.3:84038805-84038824 | None:intergenic | 15.0% |
| !! | AAAATAACTGTTACATTTGA+GGG | + | chr6.3:84039493-84039512 | None:intergenic | 20.0% |
| !! | ACTAAAACATGAATTTGAAT+AGG | - | chr6.3:84038274-84038293 | MS.gene75088:intron | 20.0% |
| !! | AGTTTATACTTATTAGAAAG+GGG | - | chr6.3:84038310-84038329 | MS.gene75088:intron | 20.0% |
| !! | ATTAATTTAGATGGTAGAAT+TGG | - | chr6.3:84039406-84039425 | MS.gene75088:intron | 20.0% |
| !! | CTGTTATGAAAATAAATGAT+TGG | - | chr6.3:84038456-84038475 | MS.gene75088:intron | 20.0% |
| !! | CTTAATAGTAAAAATTACCT+TGG | + | chr6.3:84039109-84039128 | None:intergenic | 20.0% |
| !! | GAATATTAAAAAGCAATACT+CGG | + | chr6.3:84039586-84039605 | None:intergenic | 20.0% |
| !! | GAGTTTATACTTATTAGAAA+GGG | - | chr6.3:84038309-84038328 | MS.gene75088:intron | 20.0% |
| !! | GTTATGAAAATAAATGATTG+GGG | - | chr6.3:84038458-84038477 | MS.gene75088:intron | 20.0% |
| !! | TAAACTTATTTGTAGCTTAT+AGG | - | chr6.3:84037717-84037736 | MS.gene75088:intron | 20.0% |
| !! | TCTACTAAATACTACAAAAT+TGG | + | chr6.3:84037551-84037570 | None:intergenic | 20.0% |
| !! | TTATTGAATAAATCTTTCCA+TGG | - | chr6.3:84038567-84038586 | MS.gene75088:intron | 20.0% |
| !! | TTGATTGACTAATTATTATC+CGG | - | chr6.3:84038749-84038768 | MS.gene75088:intron | 20.0% |
| !!! | ATTTGACAAATATGTTTTGA+AGG | + | chr6.3:84038372-84038391 | None:intergenic | 20.0% |
| !!! | CTAGTTATTGTTGAATTTTA+TGG | - | chr6.3:84037948-84037967 | MS.gene75088:intron | 20.0% |
| !!! | GTTAATTATTTTGGAAAAAG+TGG | - | chr6.3:84037769-84037788 | MS.gene75088:CDS | 20.0% |
| !!! | GTTTTTACTTTATGTCTTTT+AGG | - | chr6.3:84037609-84037628 | MS.gene75088:intron | 20.0% |
| !!! | TCAAATGTAACAGTTATTTT+GGG | - | chr6.3:84039493-84039512 | MS.gene75088:intron | 20.0% |
| !!! | TTACATTTTTTTGCATGATT+AGG | - | chr6.3:84037011-84037030 | MS.gene75088:intron | 20.0% |
| ! | AAAAAAAAAGTGACCTTGAA+AGG | + | chr6.3:84036962-84036981 | None:intergenic | 25.0% |
| ! | AAAAATATTCTATTCACTGC+TGG | - | chr6.3:84038809-84038828 | MS.gene75088:intron | 25.0% |
| ! | AAAAGTGGTTAAATAACTCT+TGG | - | chr6.3:84037784-84037803 | MS.gene75088:CDS | 25.0% |
| ! | AACACACATACATGATTAAA+AGG | + | chr6.3:84037155-84037174 | None:intergenic | 25.0% |
| ! | AATTATTATCCGGATAATAC+AGG | - | chr6.3:84038759-84038778 | MS.gene75088:intron | 25.0% |
| ! | ACACACATACATGATTAAAA+GGG | + | chr6.3:84037154-84037173 | None:intergenic | 25.0% |
| ! | ACATTAGTAGTAATAGGATT+AGG | - | chr6.3:84037120-84037139 | MS.gene75088:intron | 25.0% |
| ! | ATAATGCATATTTGAGTGTT+TGG | - | chr6.3:84039710-84039729 | MS.gene75088:intron | 25.0% |
| ! | ATTATTATCCGGATAATACA+GGG | - | chr6.3:84038760-84038779 | MS.gene75088:intron | 25.0% |
| ! | ATTCAATCAGATATTACTAG+TGG | - | chr6.3:84038390-84038409 | MS.gene75088:intron | 25.0% |
| ! | CAAAATAACTGTTACATTTG+AGG | + | chr6.3:84039494-84039513 | None:intergenic | 25.0% |
| ! | CGAGTTTATACTTATTAGAA+AGG | - | chr6.3:84038308-84038327 | MS.gene75088:intron | 25.0% |
| ! | CTATGCAACATAGAATTATA+GGG | - | chr6.3:84039533-84039552 | MS.gene75088:intron | 25.0% |
| ! | GCTCATAGTATTAATTTAGA+TGG | - | chr6.3:84039397-84039416 | MS.gene75088:intron | 25.0% |
| ! | TAAATACTACAAAATTGGAC+TGG | + | chr6.3:84037546-84037565 | None:intergenic | 25.0% |
| ! | TACAAGAAAAAAGACTTCTT+TGG | - | chr6.3:84037418-84037437 | MS.gene75088:intron | 25.0% |
| ! | TCATTGACATTAGTAGTAAT+AGG | - | chr6.3:84037114-84037133 | MS.gene75088:intron | 25.0% |
| ! | TCTATGCAACATAGAATTAT+AGG | - | chr6.3:84039532-84039551 | MS.gene75088:intron | 25.0% |
| ! | TCTCATCAAAATTTACTTTG+AGG | + | chr6.3:84038987-84039006 | None:intergenic | 25.0% |
| !! | CTCAAATGTAACAGTTATTT+TGG | - | chr6.3:84039492-84039511 | MS.gene75088:intron | 25.0% |
| !! | CTTACATATTTTCCTTGTTA+AGG | - | chr6.3:84039789-84039808 | MS.gene75088:intron | 25.0% |
| !! | TTTTCATAACAGTCCTTTTA+TGG | + | chr6.3:84038448-84038467 | None:intergenic | 25.0% |
| !!! | AGTCTTTTTTCTTGTATGTT+TGG | + | chr6.3:84037414-84037433 | None:intergenic | 25.0% |
| !!! | CAAATTCATGTTTTAGTAGA+AGG | + | chr6.3:84038271-84038290 | None:intergenic | 25.0% |
| !!! | GATTTTGAGTGATTTATGTT+TGG | - | chr6.3:84037210-84037229 | MS.gene75088:intron | 25.0% |
| !!! | GTGTGTTTTTAAAGTATGTT+TGG | - | chr6.3:84037168-84037187 | MS.gene75088:intron | 25.0% |
| !!! | TCCTGATGTATTTTGTTTAA+TGG | - | chr6.3:84038914-84038933 | MS.gene75088:CDS | 25.0% |
| !!! | TGTATTTTGTTTAATGGCTT+TGG | - | chr6.3:84038920-84038939 | MS.gene75088:CDS | 25.0% |
| AAACAAAATACATCAGGAAC+AGG | + | chr6.3:84038912-84038931 | None:intergenic | 30.0% | |
| ACTAATAGCATCACATCAAA+AGG | + | chr6.3:84037476-84037495 | None:intergenic | 30.0% | |
| AGAAAAAAGACTTCTTTGGT+TGG | - | chr6.3:84037422-84037441 | MS.gene75088:intron | 30.0% | |
| ATAATCCCACATTTGAATCT+TGG | - | chr6.3:84037090-84037109 | MS.gene75088:intron | 30.0% | |
| ATCATGGATGAAAACCAAAA+TGG | + | chr6.3:84038615-84038634 | None:intergenic | 30.0% | |
| ATGATAAAGACTACTACACA+AGG | - | chr6.3:84038630-84038649 | MS.gene75088:intron | 30.0% | |
| ATGCAATGAAATACTACCAA+GGG | + | chr6.3:84038076-84038095 | None:intergenic | 30.0% | |
| ATGTGATCAACATGGATAAA+AGG | - | chr6.3:84038491-84038510 | MS.gene75088:intron | 30.0% | |
| CAAAAAGTAAAAGAGTGAAG+GGG | + | chr6.3:84038031-84038050 | None:intergenic | 30.0% | |
| CAATATTTCCCTGTATTATC+CGG | + | chr6.3:84038771-84038790 | None:intergenic | 30.0% | |
| CATCATACATTTGTTTCACT+AGG | + | chr6.3:84039838-84039857 | None:intergenic | 30.0% | |
| CCAAAAAGTAAAAGAGTGAA+GGG | + | chr6.3:84038032-84038051 | None:intergenic | 30.0% | |
| CTAATAGCATCACATCAAAA+GGG | + | chr6.3:84037475-84037494 | None:intergenic | 30.0% | |
| GCCATTAAACAAAATACATC+AGG | + | chr6.3:84038918-84038937 | None:intergenic | 30.0% | |
| GTGAAACAAATGTATGATGA+TGG | - | chr6.3:84039839-84039858 | MS.gene75088:intron | 30.0% | |
| TAATAACAACAAGCACCAAA+TGG | + | chr6.3:84037673-84037692 | None:intergenic | 30.0% | |
| TAATAGCATCACATCAAAAG+GGG | + | chr6.3:84037474-84037493 | None:intergenic | 30.0% | |
| TAATCCCACATTTGAATCTT+GGG | - | chr6.3:84037091-84037110 | MS.gene75088:intron | 30.0% | |
| TACATCAAATGTGATCAACA+TGG | - | chr6.3:84038483-84038502 | MS.gene75088:intron | 30.0% | |
| TAGTTCAGTAATTAAGACAC+TGG | + | chr6.3:84038175-84038194 | None:intergenic | 30.0% | |
| TATTATCCAAAGTCCAAACA+GGG | + | chr6.3:84037699-84037718 | None:intergenic | 30.0% | |
| TCACTTATCATGATGAAAAC+TGG | + | chr6.3:84037744-84037763 | None:intergenic | 30.0% | |
| TCCAAAAAGTAAAAGAGTGA+AGG | + | chr6.3:84038033-84038052 | None:intergenic | 30.0% | |
| TTACTGAACTATACTGAGTT+TGG | - | chr6.3:84038184-84038203 | MS.gene75088:intron | 30.0% | |
| TTAGTAGTAATAGGATTAGG+AGG | - | chr6.3:84037123-84037142 | MS.gene75088:intron | 30.0% | |
| TTATTATCCAAAGTCCAAAC+AGG | + | chr6.3:84037700-84037719 | None:intergenic | 30.0% | |
| TTGTGTAGTAGTCTTTATCA+TGG | + | chr6.3:84038631-84038650 | None:intergenic | 30.0% | |
| ! | ACTTTGAGGAAAACAATTTC+AGG | + | chr6.3:84038973-84038992 | None:intergenic | 30.0% |
| ! | ATGCATTGACAATAAGCTAA+TGG | - | chr6.3:84039881-84039900 | MS.gene75088:intron | 30.0% |
| ! | CTTTGAGGAAAACAATTTCA+GGG | + | chr6.3:84038972-84038991 | None:intergenic | 30.0% |
| ! | TTAGAAGTCTTTGACCATTT+TGG | - | chr6.3:84038598-84038617 | MS.gene75088:intron | 30.0% |
| ! | TTGAAAGTGACGTTCTTTTT+CGG | - | chr6.3:84039457-84039476 | MS.gene75088:intron | 30.0% |
| ! | TTGTTGAATTTTATGGGACT+TGG | - | chr6.3:84037955-84037974 | MS.gene75088:intron | 30.0% |
| !! | AAGTGGATTATCTAAGTGTA+TGG | - | chr6.3:84039748-84039767 | MS.gene75088:intron | 30.0% |
| !! | CTTACTTCCACTTTTATAGA+GGG | - | chr6.3:84039046-84039065 | MS.gene75088:intron | 30.0% |
| !! | TTACTTCCACTTTTATAGAG+GGG | - | chr6.3:84039047-84039066 | MS.gene75088:intron | 30.0% |
| !!! | ATGTAACAGTTATTTTGGGA+CGG | - | chr6.3:84039497-84039516 | MS.gene75088:intron | 30.0% |
| AAAACACTTGCTTCCTTTCA+AGG | - | chr6.3:84036946-84036965 | MS.gene75088:intron | 35.0% | |
| AATAGCATCACATCAAAAGG+GGG | + | chr6.3:84037473-84037492 | None:intergenic | 35.0% | |
| AATGACCCAAGATTCAAATG+TGG | + | chr6.3:84037099-84037118 | None:intergenic | 35.0% | |
| AATTAATGAGTGGGGTGATA+AGG | + | chr6.3:84039184-84039203 | None:intergenic | 35.0% | |
| AATTGTGTGATGTGATTCGA+AGG | + | chr6.3:84038549-84038568 | None:intergenic | 35.0% | |
| ACTCTGTCAGGAAAAGAATA+AGG | + | chr6.3:84038522-84038541 | None:intergenic | 35.0% | |
| ATGACCCAAGATTCAAATGT+GGG | + | chr6.3:84037098-84037117 | None:intergenic | 35.0% | |
| CATGCAATGAAATACTACCA+AGG | + | chr6.3:84038077-84038096 | None:intergenic | 35.0% | |
| CCTCTATAAAAGTGGAAGTA+AGG | + | chr6.3:84039048-84039067 | None:intergenic | 35.0% | |
| CTGTTACGAATTTACTAACC+TGG | - | chr6.3:84038213-84038232 | MS.gene75088:intron | 35.0% | |
| GAAATGTGACAGACTATTGT+GGG | + | chr6.3:84039255-84039274 | None:intergenic | 35.0% | |
| GAGTGAATGTCAATCATGTT+TGG | + | chr6.3:84037885-84037904 | None:intergenic | 35.0% | |
| GTAGTATTTCATTGCATGTC+CGG | - | chr6.3:84038079-84038098 | MS.gene75088:intron | 35.0% | |
| TAATTCTCTTCGAAACGTAG+AGG | - | chr6.3:84039640-84039659 | MS.gene75088:intron | 35.0% | |
| TGAAATGTGACAGACTATTG+TGG | + | chr6.3:84039256-84039275 | None:intergenic | 35.0% | |
| TGGATGTTACAAGTTCCATT+TGG | - | chr6.3:84037655-84037674 | MS.gene75088:intron | 35.0% | |
| TTATGGAAGTGGAGTACAAT+AGG | + | chr6.3:84038431-84038450 | None:intergenic | 35.0% | |
| TTGAGAGAAACAAACATGTC+AGG | - | chr6.3:84037349-84037368 | MS.gene75088:intron | 35.0% | |
| TTGCATGCTGCAGAAATTAT+CGG | - | chr6.3:84038882-84038901 | MS.gene75088:CDS | 35.0% | |
| TTGTACTCCACTTCCATAAA+AGG | - | chr6.3:84038432-84038451 | MS.gene75088:intron | 35.0% | |
| ! | ACATTCAGACTTTTGCACAT+TGG | + | chr6.3:84039015-84039034 | None:intergenic | 35.0% |
| ! | ATTTTCATGTTCACTTGCCA+AGG | - | chr6.3:84039089-84039108 | MS.gene75088:intron | 35.0% |
| ! | CGGTGGGAGTATATATAATA+CGG | + | chr6.3:84039231-84039250 | None:intergenic | 35.0% |
| ! | CTTTACCACTTGTTTAGTTC+CGG | + | chr6.3:84038101-84038120 | None:intergenic | 35.0% |
| ! | GATAAATGAAAGCGCAAGAA+TGG | - | chr6.3:84039294-84039313 | MS.gene75088:intron | 35.0% |
| ! | GGGAGTATATATAATACGGT+TGG | + | chr6.3:84039227-84039246 | None:intergenic | 35.0% |
| ! | GTTGTTATTATGACCCTGTT+TGG | - | chr6.3:84037683-84037702 | MS.gene75088:intron | 35.0% |
| ! | TAACAGTCCTTTTATGGAAG+TGG | + | chr6.3:84038442-84038461 | None:intergenic | 35.0% |
| ! | TGTGTAAGTGTAAAGCATCA+TGG | - | chr6.3:84037635-84037654 | MS.gene75088:intron | 35.0% |
| !! | AATACGGTTGGTTTGATGAT+TGG | + | chr6.3:84039215-84039234 | None:intergenic | 35.0% |
| !! | ATACGGTTGGTTTGATGATT+GGG | + | chr6.3:84039214-84039233 | None:intergenic | 35.0% |
| !! | CCCTTCACTCTTTTACTTTT+TGG | - | chr6.3:84038029-84038048 | MS.gene75088:intron | 35.0% |
| !! | CCTTACTTCCACTTTTATAG+AGG | - | chr6.3:84039045-84039064 | MS.gene75088:intron | 35.0% |
| !!! | AAGTATGTTTGGTTTTGCGT+TGG | - | chr6.3:84037179-84037198 | MS.gene75088:intron | 35.0% |
| !!! | TGCTGGAAAGTTTTCTAGTT+AGG | - | chr6.3:84038826-84038845 | MS.gene75088:intron | 35.0% |
| AAGGAGATGAAAGTGGAAGA+AGG | + | chr6.3:84036853-84036872 | None:intergenic | 40.0% | |
| ACAATAGGAAACTCAGCATG+CGG | + | chr6.3:84038416-84038435 | None:intergenic | 40.0% | |
| AGCAACATGAATCAGACAGT+CGG | + | chr6.3:84038673-84038692 | None:intergenic | 40.0% | |
| AGGAGATGAAAGTGGAAGAA+GGG | + | chr6.3:84036852-84036871 | None:intergenic | 40.0% | |
| CGTTTCGAAGAGAATTATGC+AGG | + | chr6.3:84039637-84039656 | None:intergenic | 40.0% | |
| GACTTCTAAACTGATAGCCA+TGG | + | chr6.3:84038587-84038606 | None:intergenic | 40.0% | |
| GCAGCATGCAAATTAAAGCA+TGG | + | chr6.3:84038873-84038892 | None:intergenic | 40.0% | |
| GCTTTGATTCTCTTCACTTC+AGG | - | chr6.3:84037806-84037825 | MS.gene75088:CDS | 40.0% | |
| GTATTGAAGAAAGAGGTGGA+AGG | + | chr6.3:84036872-84036891 | None:intergenic | 40.0% | |
| GTTGCTCTAGTATTCTGCTT+TGG | - | chr6.3:84038687-84038706 | MS.gene75088:intron | 40.0% | |
| TCAGGTATGTGCAACTGTTT+CGG | - | chr6.3:84037824-84037843 | MS.gene75088:CDS | 40.0% | |
| TGCATATTTGAGTGTTTGGC+TGG | - | chr6.3:84039714-84039733 | MS.gene75088:intron | 40.0% | |
| TTACTGCATGTGCAGCATTA+GGG | - | chr6.3:84038713-84038732 | MS.gene75088:intron | 40.0% | |
| TTATGACCCTGTTTGGACTT+TGG | - | chr6.3:84037690-84037709 | MS.gene75088:intron | 40.0% | |
| ! | AGGAAGCAAGTGTTTTCTTC+TGG | + | chr6.3:84036942-84036961 | None:intergenic | 40.0% |
| ! | GATGCTTCTGTTTTCTGTAC+TGG | - | chr6.3:84039608-84039627 | MS.gene75088:intron | 40.0% |
| ! | GCATTCTTTTCCCACCATTT+CGG | + | chr6.3:84037861-84037880 | None:intergenic | 40.0% |
| ! | GGAAGCAAGTGTTTTCTTCT+GGG | + | chr6.3:84036941-84036960 | None:intergenic | 40.0% |
| ! | TTCGAAGGTTTTACTCTGTC+AGG | + | chr6.3:84038534-84038553 | None:intergenic | 40.0% |
| ! | TTGGTTTGATGATTGGGGTA+GGG | + | chr6.3:84039208-84039227 | None:intergenic | 40.0% |
| !! | CGCATTTCTAGTCCTTAACA+AGG | + | chr6.3:84039804-84039823 | None:intergenic | 40.0% |
| !! | GAGAGTATTGAAGAAAGAGG+TGG | + | chr6.3:84036876-84036895 | None:intergenic | 40.0% |
| !! | GTACAGAAAACAGAAGCATC+AGG | + | chr6.3:84039608-84039627 | None:intergenic | 40.0% |
| !! | TACGGTTGGTTTGATGATTG+GGG | + | chr6.3:84039213-84039232 | None:intergenic | 40.0% |
| !! | TCTTGAAGCAAGAGTACCTT+GGG | + | chr6.3:84038005-84038024 | None:intergenic | 40.0% |
| !! | TTCTTGAAGCAAGAGTACCT+TGG | + | chr6.3:84038006-84038025 | None:intergenic | 40.0% |
| !!! | AGTTATTTTGGGACGGACTA+CGG | - | chr6.3:84039504-84039523 | MS.gene75088:intron | 40.0% |
| !!! | TTTTTTTGTTGTGCTGCCCT+TGG | - | chr6.3:84038057-84038076 | MS.gene75088:intron | 40.0% |
| AGCAGTAGTTAGTTACTGCC+TGG | - | chr6.3:84039135-84039154 | MS.gene75088:intron | 45.0% | |
| AGGAAGAGAGAAAACCCTCT+TGG | + | chr6.3:84036912-84036931 | None:intergenic | 45.0% | |
| CAATTGAGTGCTAAGCATCC+AGG | + | chr6.3:84038234-84038253 | None:intergenic | 45.0% | |
| CATGTCCGGAACTAAACAAG+TGG | - | chr6.3:84038093-84038112 | MS.gene75088:intron | 45.0% | |
| CTTACTGCATGTGCAGCATT+AGG | - | chr6.3:84038712-84038731 | MS.gene75088:intron | 45.0% | |
| GAATCAGACAGTCGGGAATT+GGG | + | chr6.3:84038665-84038684 | None:intergenic | 45.0% | |
| GCAACATGAATCAGACAGTC+GGG | + | chr6.3:84038672-84038691 | None:intergenic | 45.0% | |
| GGAAGAGAGAAAACCCTCTT+GGG | + | chr6.3:84036911-84036930 | None:intergenic | 45.0% | |
| GGGTAGGGGAATTAATGAGT+GGG | + | chr6.3:84039193-84039212 | None:intergenic | 45.0% | |
| GGTAGGGGAATTAATGAGTG+GGG | + | chr6.3:84039192-84039211 | None:intergenic | 45.0% | |
| GTACCTTGGGGAATAATGCT+CGG | + | chr6.3:84037992-84038011 | None:intergenic | 45.0% | |
| TACTGCATGTGCAGCATTAG+GGG | - | chr6.3:84038714-84038733 | MS.gene75088:intron | 45.0% | |
| TGAATCAGACAGTCGGGAAT+TGG | + | chr6.3:84038666-84038685 | None:intergenic | 45.0% | |
| TGTGACAGACTATTGTGGGA+CGG | + | chr6.3:84039251-84039270 | None:intergenic | 45.0% | |
| TGTGCAACTGTTTCGGAAAC+TGG | - | chr6.3:84037831-84037850 | MS.gene75088:CDS | 45.0% | |
| ! | ACTTTTATAGAGGGGCTGAG+GGG | - | chr6.3:84039055-84039074 | MS.gene75088:intron | 45.0% |
| ! | AGCAAGTGTTTTCTTCTGGG+TGG | + | chr6.3:84036938-84036957 | None:intergenic | 45.0% |
| ! | CACTTTTATAGAGGGGCTGA+GGG | - | chr6.3:84039054-84039073 | MS.gene75088:intron | 45.0% |
| ! | GAATGCTTTGAGTCAAGCTG+AGG | - | chr6.3:84037920-84037939 | MS.gene75088:intron | 45.0% |
| ! | GGCTGGTTGTATTCAGAAAG+TGG | - | chr6.3:84039731-84039750 | MS.gene75088:intron | 45.0% |
| ! | TGGTTTGATGATTGGGGTAG+GGG | + | chr6.3:84039207-84039226 | None:intergenic | 45.0% |
| ! | TGTTTTCTTCTGGGTGGAGA+AGG | + | chr6.3:84036932-84036951 | None:intergenic | 45.0% |
| !! | AAATCACCGATTCCCTTAGG+CGG | + | chr6.3:84039982-84040001 | None:intergenic | 45.0% |
| !! | ACCAAATCACCGATTCCCTT+AGG | + | chr6.3:84039985-84040004 | None:intergenic | 45.0% |
| !! | CGGGAGAGTATTGAAGAAAG+AGG | + | chr6.3:84036879-84036898 | None:intergenic | 45.0% |
| !! | CTTGAAGCAAGAGTACCTTG+GGG | + | chr6.3:84038004-84038023 | None:intergenic | 45.0% |
| !! | GTTGGTTTGATGATTGGGGT+AGG | + | chr6.3:84039209-84039228 | None:intergenic | 45.0% |
| !! | AATAATAACAATAATAAAAA+GGG | + | chr6.3:84036990-84037009 | None:intergenic | 5.0% |
| !! | TAATAATAACAATAATAAAA+AGG | + | chr6.3:84036991-84037010 | None:intergenic | 5.0% |
| AAAACCCTCTTGGGTGAGAG+TGG | + | chr6.3:84036902-84036921 | None:intergenic | 50.0% | |
| AAACTGGTCAGCCGAAATGG+TGG | - | chr6.3:84037847-84037866 | MS.gene75088:CDS | 50.0% | |
| AACACAGCTCGATGCAGCAT+TGG | - | chr6.3:84039955-84039974 | MS.gene75088:CDS | 50.0% | |
| AACTGGTCAGCCGAAATGGT+GGG | - | chr6.3:84037848-84037867 | MS.gene75088:CDS | 50.0% | |
| ACAGACTATTGTGGGACGGT+GGG | + | chr6.3:84039247-84039266 | None:intergenic | 50.0% | |
| ACAGTCGGGAATTGGGAATC+GGG | + | chr6.3:84038658-84038677 | None:intergenic | 50.0% | |
| AGCTGTGTTATGCGTCTGGA+TGG | + | chr6.3:84039944-84039963 | None:intergenic | 50.0% | |
| ATCGAGCTGTGTTATGCGTC+TGG | + | chr6.3:84039948-84039967 | None:intergenic | 50.0% | |
| ATTGGTCCGCCTAAGGGAAT+CGG | - | chr6.3:84039973-84039992 | MS.gene75088:CDS | 50.0% | |
| CCTCAGCCCCTCTATAAAAG+TGG | + | chr6.3:84039056-84039075 | None:intergenic | 50.0% | |
| GACAGTCGGGAATTGGGAAT+CGG | + | chr6.3:84038659-84038678 | None:intergenic | 50.0% | |
| GAGGTGGAAGGAGATGAAAG+TGG | + | chr6.3:84036860-84036879 | None:intergenic | 50.0% | |
| GCCTAAGGGAATCGGTGATT+TGG | - | chr6.3:84039981-84040000 | MS.gene75088:CDS | 50.0% | |
| GGGGTAGGGGAATTAATGAG+TGG | + | chr6.3:84039194-84039213 | None:intergenic | 50.0% | |
| TGAAACTTCCTCTGCTCCCA+AGG | - | chr6.3:84040008-84040027 | MS.gene75088:CDS | 50.0% | |
| TGGGGTGATAAGGAGTGAGA+GGG | + | chr6.3:84039174-84039193 | None:intergenic | 50.0% | |
| TTGCCGAGCATTATTCCCCA+AGG | - | chr6.3:84037986-84038005 | MS.gene75088:intron | 50.0% | |
| ! | AGAGTCTGCTGGTCTATCCT+TGG | + | chr6.3:84040028-84040047 | None:intergenic | 50.0% |
| ! | GAGTCTGCTGGTCTATCCTT+GGG | + | chr6.3:84040027-84040046 | None:intergenic | 50.0% |
| !! | CCACTTTTATAGAGGGGCTG+AGG | - | chr6.3:84039053-84039072 | MS.gene75088:intron | 50.0% |
| CGGAAACTGGTCAGCCGAAA+TGG | - | chr6.3:84037844-84037863 | MS.gene75088:CDS | 55.0% | |
| GACAGACTATTGTGGGACGG+TGG | + | chr6.3:84039248-84039267 | None:intergenic | 55.0% | |
| GAGGGTTCGATCTTCACACC+AGG | + | chr6.3:84039156-84039175 | None:intergenic | 55.0% | |
| GTGGGGTGATAAGGAGTGAG+AGG | + | chr6.3:84039175-84039194 | None:intergenic | 55.0% | |
| TGGTCTATCCTTGGGAGCAG+AGG | + | chr6.3:84040019-84040038 | None:intergenic | 55.0% | |
| !! | ATGCAGCATTGGTCCGCCTA+AGG | - | chr6.3:84039966-84039985 | MS.gene75088:CDS | 55.0% |
| !! | TGCAGCATTGGTCCGCCTAA+GGG | - | chr6.3:84039967-84039986 | MS.gene75088:CDS | 55.0% |
| ACCCTCTTGGGTGAGAGTGG+CGG | + | chr6.3:84036899-84036918 | None:intergenic | 60.0% | |
| CCCGCCACTCTCACCCAAGA+GGG | - | chr6.3:84036895-84036914 | MS.gene75088:CDS | 65.0% | |
| CCCTCTTGGGTGAGAGTGGC+GGG | + | chr6.3:84036898-84036917 | None:intergenic | 65.0% | |
| TCCCGCCACTCTCACCCAAG+AGG | - | chr6.3:84036894-84036913 | MS.gene75088:CDS | 65.0% | |
| TAGAGGGGCTGAGGGGCAGC+TGG | - | chr6.3:84039062-84039081 | MS.gene75088:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 84036800 | 84040053 | 84036800 | ID=MS.gene75088 |
| chr6.3 | mRNA | 84036800 | 84040053 | 84036800 | ID=MS.gene75088.t1;Parent=MS.gene75088 |
| chr6.3 | exon | 84039886 | 84040053 | 84039886 | ID=MS.gene75088.t1.exon1;Parent=MS.gene75088.t1 |
| chr6.3 | CDS | 84039886 | 84040053 | 84039886 | ID=cds.MS.gene75088.t1;Parent=MS.gene75088.t1 |
| chr6.3 | exon | 84038846 | 84039025 | 84038846 | ID=MS.gene75088.t1.exon2;Parent=MS.gene75088.t1 |
| chr6.3 | CDS | 84038846 | 84039025 | 84038846 | ID=cds.MS.gene75088.t1;Parent=MS.gene75088.t1 |
| chr6.3 | exon | 84037743 | 84037907 | 84037743 | ID=MS.gene75088.t1.exon3;Parent=MS.gene75088.t1 |
| chr6.3 | CDS | 84037743 | 84037907 | 84037743 | ID=cds.MS.gene75088.t1;Parent=MS.gene75088.t1 |
| chr6.3 | exon | 84036800 | 84036931 | 84036800 | ID=MS.gene75088.t1.exon4;Parent=MS.gene75088.t1 |
| chr6.3 | CDS | 84036800 | 84036931 | 84036800 | ID=cds.MS.gene75088.t1;Parent=MS.gene75088.t1 |
| Gene Sequence |
| Protein sequence |
