Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75473.t1 | XP_003601956.1 | 99.7 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 1.20E-135 | 492.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75473.t1 | G7J3S2 | 99.7 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 9.0e-136 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052209 | MS.gene75473 | 0.871781 | 5.26E-67 | -1.69E-46 |
| MS.gene061061 | MS.gene75473 | 0.817481 | 3.23E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75473.t1 | MTR_3g087250 | 99.666 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 0.0 | 603 |
| MS.gene75473.t1 | MTR_3g074260 | 59.344 | 305 | 96 | 7 | 3 | 299 | 4 | 288 | 1.14e-107 | 315 |
| MS.gene75473.t1 | MTR_0276s0040 | 50.321 | 312 | 115 | 6 | 5 | 296 | 4 | 295 | 3.30e-89 | 270 |
| MS.gene75473.t1 | MTR_3g074260 | 59.483 | 232 | 75 | 5 | 71 | 299 | 1 | 216 | 2.99e-79 | 239 |
| MS.gene75473.t1 | MTR_3g074260 | 60.891 | 202 | 63 | 5 | 3 | 195 | 4 | 198 | 3.56e-72 | 221 |
| MS.gene75473.t1 | MTR_3g036400 | 58.065 | 62 | 23 | 1 | 71 | 129 | 1 | 62 | 1.35e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75473.t1 | AT4G39860 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.28e-127 | 364 |
| MS.gene75473.t1 | AT4G39860 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.28e-127 | 364 |
| MS.gene75473.t1 | AT4G39860 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.28e-127 | 364 |
| MS.gene75473.t1 | AT4G39860 | 62.626 | 297 | 109 | 2 | 3 | 299 | 4 | 298 | 2.62e-124 | 357 |
| MS.gene75473.t1 | AT1G78150 | 52.508 | 299 | 112 | 5 | 3 | 299 | 4 | 274 | 1.54e-90 | 271 |
| MS.gene75473.t1 | AT1G78150 | 52.508 | 299 | 112 | 5 | 3 | 299 | 4 | 274 | 1.54e-90 | 271 |
| MS.gene75473.t1 | AT1G35780 | 50.980 | 306 | 118 | 7 | 3 | 299 | 4 | 286 | 6.71e-87 | 262 |
| MS.gene75473.t1 | AT1G78150 | 47.866 | 328 | 112 | 6 | 3 | 299 | 4 | 303 | 3.13e-84 | 255 |
| MS.gene75473.t1 | AT2G22270 | 44.615 | 325 | 140 | 11 | 10 | 299 | 9 | 328 | 1.36e-69 | 219 |
| MS.gene75473.t1 | AT2G22270 | 45.423 | 284 | 116 | 10 | 51 | 299 | 10 | 289 | 2.89e-59 | 191 |
| MS.gene75473.t1 | AT1G35780 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.05e-58 | 187 |
| MS.gene75473.t1 | AT1G35780 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.05e-58 | 187 |
| MS.gene75473.t1 | AT1G35780 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.05e-58 | 187 |
Find 82 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGATGTCCTCAAATTTC+TGG | 0.079733 | 3.3:+72759498 | None:intergenic |
| TTAACAGGGTCTTTGATTTC+TGG | 0.136628 | 3.3:+72758254 | None:intergenic |
| CAGAAGTTTGCAGAGCTTTC+AGG | 0.210481 | 3.3:-72758383 | MS.gene75473:CDS |
| GGGCAAAGTAATATCTTATT+TGG | 0.218414 | 3.3:-72758446 | MS.gene75473:CDS |
| CTCTCAGCTTTGCCCTGCTC+AGG | 0.267205 | 3.3:+72758312 | None:intergenic |
| GAAATCAAAGACCCTGTTAA+AGG | 0.278225 | 3.3:-72758251 | MS.gene75473:CDS |
| GGTATAGAGGTAGGCTTCTT+AGG | 0.279404 | 3.3:+72759724 | None:intergenic |
| CTCACTGGAAATGATATATT+TGG | 0.293153 | 3.3:-72759607 | MS.gene75473:CDS |
| GGTTTGCGGGCACCTTTAAC+AGG | 0.293722 | 3.3:+72758239 | None:intergenic |
| TTCTTTGATGTCTTCTCAAC+AGG | 0.305067 | 3.3:+72758416 | None:intergenic |
| ATGGAACGCGGTACAATTTC+AGG | 0.309840 | 3.3:+72759577 | None:intergenic |
| TCCAGTGAGCTCCTTGGTCT+TGG | 0.319341 | 3.3:+72759621 | None:intergenic |
| GCATCTCAGCAAGCAATAAA+TGG | 0.332847 | 3.3:-72759787 | MS.gene75473:intron |
| CTGAAAGCTCTGCAAACTTC+TGG | 0.342314 | 3.3:+72758384 | None:intergenic |
| CTTAGGACTAACACTTTCTT+CGG | 0.378680 | 3.3:+72759741 | None:intergenic |
| AACTAGCATACGCATATATC+AGG | 0.379428 | 3.3:-72759941 | MS.gene75473:intron |
| CATGGCAGCTGCACGAACTT+TGG | 0.379756 | 3.3:-72759557 | MS.gene75473:CDS |
| ACCGATGTCCTCAAATTTCT+GGG | 0.398231 | 3.3:+72759499 | None:intergenic |
| TTCCTGTAATTGTAGCCTGC+TGG | 0.421397 | 3.3:-72758470 | MS.gene75473:intron |
| ACTTTCAGCAAGCCATGCTC+AGG | 0.438294 | 3.3:-72760051 | MS.gene75473:intron |
| TGGGACTTTGCAAACTGACT+TGG | 0.443269 | 3.3:-72759674 | MS.gene75473:CDS |
| TCTCAGCTTTGCCCTGCTCA+GGG | 0.467139 | 3.3:+72758313 | None:intergenic |
| GAGCTTCTTCTTCAGTGAGC+TGG | 0.469415 | 3.3:+72760939 | None:intergenic |
| CTTTGCTACCTCAGGTATAG+AGG | 0.474305 | 3.3:+72759711 | None:intergenic |
| GTCCTCAAATTTCTGGGAAG+AGG | 0.478841 | 3.3:+72759505 | None:intergenic |
| TCACGCTGCTTTGCTACCTC+AGG | 0.479040 | 3.3:+72759703 | None:intergenic |
| GCAATGCTGCTGTCTCCACC+AGG | 0.480965 | 3.3:+72758215 | None:intergenic |
| ATCAGAAGGCTGACGAGAGC+GGG | 0.481733 | 3.3:+72760988 | None:intergenic |
| CTGACGAGAGCGGGTGGCGG+AGG | 0.484128 | 3.3:+72760997 | None:intergenic |
| GAATCAACAACAACGGGAGG+AGG | 0.485353 | 3.3:+72761019 | None:intergenic |
| CAAAGTTCGTGCAGCTGCCA+TGG | 0.485787 | 3.3:+72759558 | None:intergenic |
| CGCGGTACAATTTCAGGAGG+AGG | 0.490011 | 3.3:+72759583 | None:intergenic |
| GCGGAGGAATCAACAACAAC+GGG | 0.491550 | 3.3:+72761013 | None:intergenic |
| CTGTAATTGTAGCCTGCTGG+TGG | 0.494796 | 3.3:-72758467 | MS.gene75473:intron |
| TTCCATGGAGATGTTCCAGC+AGG | 0.495508 | 3.3:-72758350 | MS.gene75473:CDS |
| GCAAAGCTGAGAGAAATAAC+TGG | 0.502572 | 3.3:-72758302 | MS.gene75473:CDS |
| AATGCTGCTGTCTCCACCAG+GGG | 0.506313 | 3.3:+72758217 | None:intergenic |
| AACCTCTTCCCAGAAATTTG+AGG | 0.507551 | 3.3:-72759507 | MS.gene75473:CDS |
| TGCACGAACTTTGGAATCAA+AGG | 0.509149 | 3.3:-72759548 | MS.gene75473:CDS |
| AAGCTCAATCTCTCTCCAAA+AGG | 0.514977 | 3.3:-72760922 | MS.gene75473:intron |
| GCCAAGACCAAGGAGCTCAC+TGG | 0.521289 | 3.3:-72759622 | MS.gene75473:CDS |
| ATATTACTTTGCCCACCAGC+AGG | 0.525761 | 3.3:+72758455 | None:intergenic |
| AGGCTGACGAGAGCGGGTGG+CGG | 0.529442 | 3.3:+72760994 | None:intergenic |
| ATCATTTCCAGTGAGCTCCT+TGG | 0.534478 | 3.3:+72759615 | None:intergenic |
| TGAAATTGTACCGCGTTCCA+TGG | 0.543593 | 3.3:-72759575 | MS.gene75473:CDS |
| TCAACAACAACGGGAGGAGG+AGG | 0.546104 | 3.3:+72761022 | None:intergenic |
| ATCAAAGGAAAGCAAGGACA+TGG | 0.548897 | 3.3:-72759533 | MS.gene75473:CDS |
| GTTTGCGGGCACCTTTAACA+GGG | 0.549073 | 3.3:+72758240 | None:intergenic |
| GAAGATTCTGCATCAGAAGC+CGG | 0.549556 | 3.3:-72759979 | MS.gene75473:CDS |
| GCAAAGCAGCGTGAACTCAG+TGG | 0.573236 | 3.3:-72759694 | MS.gene75473:CDS |
| TTGGTGTGTGTCTTTCTCAC+CGG | 0.575218 | 3.3:+72761076 | None:intergenic |
| ACACTTCCGATCTCCTCACT+TGG | 0.577893 | 3.3:-72761054 | MS.gene75473:CDS |
| TTTGGAATCAAAGGAAAGCA+AGG | 0.578160 | 3.3:-72759539 | MS.gene75473:CDS |
| TCCCAGAAATTTGAGGACAT+CGG | 0.579400 | 3.3:-72759500 | MS.gene75473:CDS |
| ATCCTGCTGGAACATCTCCA+TGG | 0.579980 | 3.3:+72758348 | None:intergenic |
| GGCAGTGACATATTTGCTGA+TGG | 0.581577 | 3.3:-72758281 | MS.gene75473:CDS |
| GCTACCTCAGGTATAGAGGT+AGG | 0.582241 | 3.3:+72759715 | None:intergenic |
| AAATATCATAATTTAGAGCA+AGG | 0.582571 | 3.3:+72758193 | None:intergenic |
| ATGAAAGAGATGAGTGGACA+TGG | 0.583015 | 3.3:-72760021 | MS.gene75473:CDS |
| AGTGAGGAGATCGGAAGTGT+TGG | 0.589898 | 3.3:+72761057 | None:intergenic |
| TTCCGATCTCCTCACTTGGT+CGG | 0.594758 | 3.3:-72761050 | MS.gene75473:CDS |
| CAATGCTGCTGTCTCCACCA+GGG | 0.594808 | 3.3:+72758216 | None:intergenic |
| TTCCGACCAAGTGAGGAGAT+CGG | 0.598387 | 3.3:+72761048 | None:intergenic |
| CGTGCAGCTGCCATGGAACG+CGG | 0.599947 | 3.3:+72759565 | None:intergenic |
| AACAACAATGGGAAGCACTC+CGG | 0.604363 | 3.3:-72761095 | None:intergenic |
| TATAAAATGAAAGAGATGAG+TGG | 0.604599 | 3.3:-72760027 | MS.gene75473:CDS |
| CAAAGCAGCGTGAACTCAGT+GGG | 0.607370 | 3.3:-72759693 | MS.gene75473:CDS |
| ACCTTGCTGATTCTATCAGA+AGG | 0.610704 | 3.3:+72760974 | None:intergenic |
| AGAAGGCTGACGAGAGCGGG+TGG | 0.616356 | 3.3:+72760991 | None:intergenic |
| TATCAGAAGGCTGACGAGAG+CGG | 0.623249 | 3.3:+72760987 | None:intergenic |
| GAGGAATCAACAACAACGGG+AGG | 0.627908 | 3.3:+72761016 | None:intergenic |
| GAGGAACTTCCGACCAAGTG+AGG | 0.628730 | 3.3:+72761041 | None:intergenic |
| ATGCTGCTGTCTCCACCAGG+GGG | 0.629578 | 3.3:+72758218 | None:intergenic |
| GCGGTACAATTTCAGGAGGA+GGG | 0.631603 | 3.3:+72759584 | None:intergenic |
| GCCTTCTGATAGAATCAGCA+AGG | 0.638816 | 3.3:-72760975 | MS.gene75473:CDS |
| TGTAATTGTAGCCTGCTGGT+GGG | 0.644942 | 3.3:-72758466 | MS.gene75473:intron |
| CTTTCAGCAAGCCATGCTCA+GGG | 0.644956 | 3.3:-72760050 | MS.gene75473:intron |
| AATATCAAATGCCAAGACCA+AGG | 0.645109 | 3.3:-72759632 | MS.gene75473:CDS |
| GGCGGAGGAATCAACAACAA+CGG | 0.655351 | 3.3:+72761012 | None:intergenic |
| TCAAAGGAAAGCAAGGACAT+GGG | 0.665351 | 3.3:-72759532 | MS.gene75473:CDS |
| GAAGCCTACCTCTATACCTG+AGG | 0.688793 | 3.3:-72759719 | MS.gene75473:CDS |
| GAACGCGGTACAATTTCAGG+AGG | 0.704954 | 3.3:+72759580 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCAAATTGAAAATAAA+CGG | + | chr3.3:72758625-72758644 | None:intergenic | 15.0% |
| !!! | ACTCTTCATTTTTATTTTTT+TGG | - | chr3.3:72760086-72760105 | MS.gene75473:intron | 15.0% |
| !!! | CTCTTCATTTTTATTTTTTT+GGG | - | chr3.3:72760087-72760106 | MS.gene75473:intron | 15.0% |
| !!! | TAAAATTTAAGTCTGTTTTT+GGG | - | chr3.3:72760396-72760415 | MS.gene75473:intron | 15.0% |
| !!! | TATAATATTTTCTTATGACA+TGG | - | chr3.3:72759918-72759937 | MS.gene75473:intron | 15.0% |
| !!! | TCAAAATCTACTTTTAAATT+TGG | - | chr3.3:72758741-72758760 | MS.gene75473:intron | 15.0% |
| !!! | TCTTCATTTTTATTTTTTTG+GGG | - | chr3.3:72760088-72760107 | MS.gene75473:intron | 15.0% |
| !! | AAACACATAAAAGAAACAAA+TGG | + | chr3.3:72760633-72760652 | None:intergenic | 20.0% |
| !! | TCAATTTGATGTTTGAAAAA+TGG | + | chr3.3:72759429-72759448 | None:intergenic | 20.0% |
| !! | TCATATTTAAGTGTTTGTTT+AGG | + | chr3.3:72759116-72759135 | None:intergenic | 20.0% |
| !!! | AAAAAAATCACTTTTTTGTG+TGG | + | chr3.3:72758966-72758985 | None:intergenic | 20.0% |
| !!! | AGAAAAAAATCTGAAACAAA+CGG | - | chr3.3:72759153-72759172 | MS.gene75473:intron | 20.0% |
| !!! | ATATTTAAATTTTGCATTCC+AGG | + | chr3.3:72760060-72760079 | None:intergenic | 20.0% |
| !!! | ATCTGTTTCTTAATTTGAAA+TGG | - | chr3.3:72758512-72758531 | MS.gene75473:intron | 20.0% |
| !!! | ATTAGCTTTTTTCAAATACA+AGG | + | chr3.3:72759029-72759048 | None:intergenic | 20.0% |
| !!! | ATTCACAATTTTCATAACAA+AGG | + | chr3.3:72759181-72759200 | None:intergenic | 20.0% |
| !!! | GTAAAATTTAAGTCTGTTTT+TGG | - | chr3.3:72760395-72760414 | MS.gene75473:intron | 20.0% |
| ! | AAAAGAAACAAATGGACAAA+TGG | + | chr3.3:72760625-72760644 | None:intergenic | 25.0% |
| ! | AAAGAAACAAATGGACAAAT+GGG | + | chr3.3:72760624-72760643 | None:intergenic | 25.0% |
| ! | AACTCGTAAGTCATAAATAT+GGG | + | chr3.3:72760780-72760799 | None:intergenic | 25.0% |
| ! | AATTAAGAAACAGATCTATG+CGG | + | chr3.3:72758507-72758526 | None:intergenic | 25.0% |
| ! | ATGTTTGAAAAATGGCTATA+AGG | + | chr3.3:72759421-72759440 | None:intergenic | 25.0% |
| ! | GCATATATCAGGTTTATATT+TGG | - | chr3.3:72759363-72759382 | MS.gene75473:intron | 25.0% |
| ! | TAACTCGTAAGTCATAAATA+TGG | + | chr3.3:72760781-72760800 | None:intergenic | 25.0% |
| ! | TATAAAATGAAAGAGATGAG+TGG | - | chr3.3:72759266-72759285 | MS.gene75473:intron | 25.0% |
| ! | TTCAAACATCAAATTGAACT+CGG | - | chr3.3:72759432-72759451 | MS.gene75473:intron | 25.0% |
| ! | TTTAGTTGAATCAAGATTAG+TGG | - | chr3.3:72758669-72758688 | MS.gene75473:intron | 25.0% |
| !! | AAAAAAATCTGAAACAAACG+GGG | - | chr3.3:72759155-72759174 | MS.gene75473:intron | 25.0% |
| !! | AAAACTATTTTCTCACAAAC+TGG | + | chr3.3:72760738-72760757 | None:intergenic | 25.0% |
| !! | AGTTTTTGAATTAACAGAAC+CGG | + | chr3.3:72759336-72759355 | None:intergenic | 25.0% |
| !! | GAAAAAAATCTGAAACAAAC+GGG | - | chr3.3:72759154-72759173 | MS.gene75473:intron | 25.0% |
| !!! | ATTTTTATTTTTTTGGGGTG+GGG | - | chr3.3:72760093-72760112 | MS.gene75473:intron | 25.0% |
| !!! | CATTTTTATTTTTTTGGGGT+GGG | - | chr3.3:72760092-72760111 | MS.gene75473:intron | 25.0% |
| !!! | CTCTAAAATGAAAAGCTATA+AGG | + | chr3.3:72759052-72759071 | None:intergenic | 25.0% |
| !!! | GAATTAAAGAAAGTGTTTTC+AGG | - | chr3.3:72758594-72758613 | MS.gene75473:intron | 25.0% |
| !!! | TCATTTTTATTTTTTTGGGG+TGG | - | chr3.3:72760091-72760110 | MS.gene75473:intron | 25.0% |
| !!! | TGTCTTTGAAATTTCTATGA+TGG | - | chr3.3:72760351-72760370 | MS.gene75473:intron | 25.0% |
| AAGACAATGTAACAAACTGA+TGG | + | chr3.3:72760337-72760356 | None:intergenic | 30.0% | |
| AAGATTCAGGTAGTTGTTAA+TGG | + | chr3.3:72759986-72760005 | None:intergenic | 30.0% | |
| ACTCGTAAGTCATAAATATG+GGG | + | chr3.3:72760779-72760798 | None:intergenic | 30.0% | |
| CTCACTGGAAATGATATATT+TGG | - | chr3.3:72759686-72759705 | MS.gene75473:CDS | 30.0% | |
| GAAAATTGTGAATCTAAGCT+AGG | - | chr3.3:72759188-72759207 | MS.gene75473:intron | 30.0% | |
| GGGCAAAGTAATATCTTATT+TGG | - | chr3.3:72760847-72760866 | MS.gene75473:intron | 30.0% | |
| GTAAAAGATCTGATCTGAAA+AGG | + | chr3.3:72758423-72758442 | None:intergenic | 30.0% | |
| TAAGATGTGTGTGTTATGTT+TGG | - | chr3.3:72760465-72760484 | MS.gene75473:intron | 30.0% | |
| TTATCGATATGAATTGAGCT+AGG | - | chr3.3:72759941-72759960 | MS.gene75473:intron | 30.0% | |
| TTCTAATGTAAGTGTCTTCT+AGG | - | chr3.3:72759823-72759842 | MS.gene75473:intron | 30.0% | |
| ! | ATTTGGCAAAAGCTACATTT+TGG | + | chr3.3:72760543-72760562 | None:intergenic | 30.0% |
| ! | TCAGGCAATAATATTTTCCA+TGG | - | chr3.3:72760928-72760947 | MS.gene75473:CDS | 30.0% |
| !! | AAATGAAAGTACGTACCTTT+TGG | + | chr3.3:72758389-72758408 | None:intergenic | 30.0% |
| !! | TGGCTTCAATTTAATTTGAC+AGG | + | chr3.3:72760286-72760305 | None:intergenic | 30.0% |
| !!! | AGCTTTTTTCAAATACAAGG+AGG | + | chr3.3:72759026-72759045 | None:intergenic | 30.0% |
| !!! | TTTTTATTTTTTTGGGGTGG+GGG | - | chr3.3:72760094-72760113 | MS.gene75473:intron | 30.0% |
| AACAACTACCTGAATCTTAG+TGG | - | chr3.3:72759988-72760007 | MS.gene75473:CDS | 35.0% | |
| AACTAGCATACGCATATATC+AGG | - | chr3.3:72759352-72759371 | MS.gene75473:intron | 35.0% | |
| AATATCAAATGCCAAGACCA+AGG | - | chr3.3:72759661-72759680 | MS.gene75473:CDS | 35.0% | |
| ACACATTCACGTAGTTAACA+TGG | + | chr3.3:72758796-72758815 | None:intergenic | 35.0% | |
| ATAAGCAGTAGGTACTTTGT+AGG | + | chr3.3:72760682-72760701 | None:intergenic | 35.0% | |
| ATGCAATCTGCAATCTTATG+TGG | - | chr3.3:72758646-72758665 | MS.gene75473:intron | 35.0% | |
| CTACAATTACAGGAAAAGGA+AGG | + | chr3.3:72760818-72760837 | None:intergenic | 35.0% | |
| CTTAGGACTAACACTTTCTT+CGG | + | chr3.3:72759555-72759574 | None:intergenic | 35.0% | |
| GAAATCAAAGACCCTGTTAA+AGG | - | chr3.3:72761042-72761061 | MS.gene75473:CDS | 35.0% | |
| GAGATTGACGAAATCACAAT+TGG | + | chr3.3:72760575-72760594 | None:intergenic | 35.0% | |
| GATCGAAGAACGATCAAAAA+AGG | + | chr3.3:72758459-72758478 | None:intergenic | 35.0% | |
| GTGTGTTATGTTTGGATTGA+CGG | - | chr3.3:72760473-72760492 | MS.gene75473:intron | 35.0% | |
| TGTTGAGCTAAATAAGCAGT+AGG | + | chr3.3:72760693-72760712 | None:intergenic | 35.0% | |
| TTCTTTGATGTCTTCTCAAC+AGG | + | chr3.3:72760880-72760899 | None:intergenic | 35.0% | |
| ! | CATGGTATATTTTCGGACAA+TGG | - | chr3.3:72759290-72759309 | MS.gene75473:intron | 35.0% |
| ! | CTATTTTCTCACAAACTGGA+CGG | + | chr3.3:72760734-72760753 | None:intergenic | 35.0% |
| ! | GAGTGGACATGGTATATTTT+CGG | - | chr3.3:72759283-72759302 | MS.gene75473:intron | 35.0% |
| ! | TGTAGCTTTTGCCAAATTCT+TGG | - | chr3.3:72760546-72760565 | MS.gene75473:intron | 35.0% |
| ! | TTAACAGGGTCTTTGATTTC+TGG | + | chr3.3:72761042-72761061 | None:intergenic | 35.0% |
| ! | TTCATTTTATACCCTGAGCA+TGG | + | chr3.3:72759257-72759276 | None:intergenic | 35.0% |
| ! | TTTGGAATCAAAGGAAAGCA+AGG | - | chr3.3:72759754-72759773 | MS.gene75473:CDS | 35.0% |
| !!! | AAGATTTTAGTTTGGGGGTT+GGG | - | chr3.3:72760126-72760145 | MS.gene75473:intron | 35.0% |
| !!! | AGGGGGTAAGATTTTAGTTT+GGG | - | chr3.3:72760119-72760138 | MS.gene75473:intron | 35.0% |
| !!! | TAAGATTTTAGTTTGGGGGT+TGG | - | chr3.3:72760125-72760144 | MS.gene75473:intron | 35.0% |
| !!! | TAAGTCTGTTTTTGGGTGTT+GGG | - | chr3.3:72760403-72760422 | MS.gene75473:intron | 35.0% |
| !!! | TAGGGGGTAAGATTTTAGTT+TGG | - | chr3.3:72760118-72760137 | MS.gene75473:intron | 35.0% |
| !!! | TTAAGTCTGTTTTTGGGTGT+TGG | - | chr3.3:72760402-72760421 | MS.gene75473:intron | 35.0% |
| AACCTCTTCCCAGAAATTTG+AGG | - | chr3.3:72759786-72759805 | MS.gene75473:intron | 40.0% | |
| AAGCTCAATCTCTCTCCAAA+AGG | - | chr3.3:72758371-72758390 | MS.gene75473:CDS | 40.0% | |
| AATGGGACTGAGAACTTGAT+TGG | + | chr3.3:72760607-72760626 | None:intergenic | 40.0% | |
| ACAATTGGCCACCAAGAATT+TGG | + | chr3.3:72760560-72760579 | None:intergenic | 40.0% | |
| ACCGATGTCCTCAAATTTCT+GGG | + | chr3.3:72759797-72759816 | None:intergenic | 40.0% | |
| ATCAAAGGAAAGCAAGGACA+TGG | - | chr3.3:72759760-72759779 | MS.gene75473:CDS | 40.0% | |
| ATCGTTGGATTGAGATCAGA+CGG | + | chr3.3:72758768-72758787 | None:intergenic | 40.0% | |
| ATGAAAGAGATGAGTGGACA+TGG | - | chr3.3:72759272-72759291 | MS.gene75473:intron | 40.0% | |
| ATGGCTATAAGGTCTCAAAC+TGG | + | chr3.3:72759410-72759429 | None:intergenic | 40.0% | |
| ATTCATCGCCACTAAGATTC+AGG | + | chr3.3:72759999-72760018 | None:intergenic | 40.0% | |
| CAGGCTACAATTACAGGAAA+AGG | + | chr3.3:72760822-72760841 | None:intergenic | 40.0% | |
| CAGTTTACCTTATGCTTTCC+TGG | - | chr3.3:72760039-72760058 | MS.gene75473:CDS | 40.0% | |
| CGGTGAGTTTGGTAAAATCA+CGG | - | chr3.3:72760493-72760512 | MS.gene75473:intron | 40.0% | |
| GCAAAGCTGAGAGAAATAAC+TGG | - | chr3.3:72760991-72761010 | MS.gene75473:CDS | 40.0% | |
| GCATCTCAGCAAGCAATAAA+TGG | - | chr3.3:72759506-72759525 | MS.gene75473:CDS | 40.0% | |
| GTGTAAGATGTCCACAAGAT+TGG | + | chr3.3:72760226-72760245 | None:intergenic | 40.0% | |
| GTTAACATGGATGTGATCGT+TGG | + | chr3.3:72758783-72758802 | None:intergenic | 40.0% | |
| TAATACTGTTGCAGCACATG+AGG | - | chr3.3:72760199-72760218 | MS.gene75473:intron | 40.0% | |
| TCAAACTGGACTCAAGATCA+AGG | + | chr3.3:72759396-72759415 | None:intergenic | 40.0% | |
| TCAAAGGAAAGCAAGGACAT+GGG | - | chr3.3:72759761-72759780 | MS.gene75473:CDS | 40.0% | |
| TCCCAGAAATTTGAGGACAT+CGG | - | chr3.3:72759793-72759812 | MS.gene75473:intron | 40.0% | |
| TGTGAATCTAAGCTAGGAGA+TGG | - | chr3.3:72759194-72759213 | MS.gene75473:intron | 40.0% | |
| ! | AGCTTTTGCCAAATTCTTGG+TGG | - | chr3.3:72760549-72760568 | MS.gene75473:intron | 40.0% |
| ! | CAGGAAAGCATAAGGTAAAC+TGG | + | chr3.3:72760041-72760060 | None:intergenic | 40.0% |
| ! | GAAAGCATAAGGTAAACTGG+TGG | + | chr3.3:72760038-72760057 | None:intergenic | 40.0% |
| ! | TAACAAACTGATGGACCTTC+CGG | + | chr3.3:72760328-72760347 | None:intergenic | 40.0% |
| ! | TTGCATTCCAGGAAAGCATA+AGG | + | chr3.3:72760049-72760068 | None:intergenic | 40.0% |
| !! | ACCTTGCTGATTCTATCAGA+AGG | + | chr3.3:72758322-72758341 | None:intergenic | 40.0% |
| !! | TGCACGAACTTTGGAATCAA+AGG | - | chr3.3:72759745-72759764 | MS.gene75473:CDS | 40.0% |
| !!! | AAGTCTGTTTTTGGGTGTTG+GGG | - | chr3.3:72760404-72760423 | MS.gene75473:intron | 40.0% |
| !!! | AGATTTTAGTTTGGGGGTTG+GGG | - | chr3.3:72760127-72760146 | MS.gene75473:intron | 40.0% |
| !!! | GGGGGTAAGATTTTAGTTTG+GGG | - | chr3.3:72760120-72760139 | MS.gene75473:intron | 40.0% |
| !!! | GGGGTAAGATTTTAGTTTGG+GGG | - | chr3.3:72760121-72760140 | MS.gene75473:intron | 40.0% |
| AACTGCACATGCATTGCATC+CGG | - | chr3.3:72760306-72760325 | MS.gene75473:intron | 45.0% | |
| AGCTGAAAAATCCCTGAGCA+GGG | - | chr3.3:72760969-72760988 | MS.gene75473:CDS | 45.0% | |
| ATATTACTTTGCCCACCAGC+AGG | + | chr3.3:72760841-72760860 | None:intergenic | 45.0% | |
| ATCATTTCCAGTGAGCTCCT+TGG | + | chr3.3:72759681-72759700 | None:intergenic | 45.0% | |
| ATGGAACGCGGTACAATTTC+AGG | + | chr3.3:72759719-72759738 | None:intergenic | 45.0% | |
| CACCGATGTCCTCAAATTTC+TGG | + | chr3.3:72759798-72759817 | None:intergenic | 45.0% | |
| CAGAAGTTTGCAGAGCTTTC+AGG | - | chr3.3:72760910-72760929 | MS.gene75473:intron | 45.0% | |
| CAGGAAAAGGAAGGTTAACC+TGG | + | chr3.3:72760809-72760828 | None:intergenic | 45.0% | |
| CTCACAAACTGGACGGTTTA+AGG | + | chr3.3:72760727-72760746 | None:intergenic | 45.0% | |
| CTGAAAGCTCTGCAAACTTC+TGG | + | chr3.3:72760912-72760931 | None:intergenic | 45.0% | |
| CTTTGCTACCTCAGGTATAG+AGG | + | chr3.3:72759585-72759604 | None:intergenic | 45.0% | |
| GAAGATTCTGCATCAGAAGC+CGG | - | chr3.3:72759314-72759333 | MS.gene75473:intron | 45.0% | |
| GACAGGCACATGTTAAGAGA+AGG | + | chr3.3:72760269-72760288 | None:intergenic | 45.0% | |
| GATGCAATGCATGTGCAGTT+TGG | + | chr3.3:72760306-72760325 | None:intergenic | 45.0% | |
| GCATAAGGTAAACTGGTGGA+TGG | + | chr3.3:72760034-72760053 | None:intergenic | 45.0% | |
| GCCTTCTGATAGAATCAGCA+AGG | - | chr3.3:72758318-72758337 | MS.gene75473:CDS | 45.0% | |
| GGTATAGAGGTAGGCTTCTT+AGG | + | chr3.3:72759572-72759591 | None:intergenic | 45.0% | |
| GTTTGGATTGACGGTGAGTT+TGG | - | chr3.3:72760482-72760501 | MS.gene75473:intron | 45.0% | |
| TGAAATTGTACCGCGTTCCA+TGG | - | chr3.3:72759718-72759737 | MS.gene75473:CDS | 45.0% | |
| TGGGACTTTGCAAACTGACT+TGG | - | chr3.3:72759619-72759638 | MS.gene75473:CDS | 45.0% | |
| TGTAATTGTAGCCTGCTGGT+GGG | - | chr3.3:72760827-72760846 | MS.gene75473:intron | 45.0% | |
| TTCCTGTAATTGTAGCCTGC+TGG | - | chr3.3:72760823-72760842 | MS.gene75473:intron | 45.0% | |
| TTGGTGTGTGTCTTTCTCAC+CGG | + | chr3.3:72758220-72758239 | None:intergenic | 45.0% | |
| ! | GGCAGTGACATATTTGCTGA+TGG | - | chr3.3:72761012-72761031 | MS.gene75473:CDS | 45.0% |
| ! | GTAAACTGGTGGATGGTCAA+GGG | + | chr3.3:72760027-72760046 | None:intergenic | 45.0% |
| ! | GTCCTCAAATTTCTGGGAAG+AGG | + | chr3.3:72759791-72759810 | None:intergenic | 45.0% |
| !! | GATTTTTCAGCTGATCCTGC+TGG | + | chr3.3:72760961-72760980 | None:intergenic | 45.0% |
| !!! | AGTCTGTTTTTGGGTGTTGG+GGG | - | chr3.3:72760405-72760424 | MS.gene75473:intron | 45.0% |
| !!! | ATTTTAGTTTGGGGGTTGGG+GGG | - | chr3.3:72760129-72760148 | MS.gene75473:intron | 45.0% |
| !!! | ATTTTTTTGGGGTGGGGGTT+AGG | - | chr3.3:72760099-72760118 | MS.gene75473:intron | 45.0% |
| !!! | GATTTTAGTTTGGGGGTTGG+GGG | - | chr3.3:72760128-72760147 | MS.gene75473:intron | 45.0% |
| !!! | TTTTTTTGGGGTGGGGGTTA+GGG | - | chr3.3:72760100-72760119 | MS.gene75473:intron | 45.0% |
| ACACTTCCGATCTCCTCACT+TGG | - | chr3.3:72758239-72758258 | MS.gene75473:CDS | 50.0% | |
| ACTTTCAGCAAGCCATGCTC+AGG | - | chr3.3:72759242-72759261 | MS.gene75473:intron | 50.0% | |
| ATCCTGCTGGAACATCTCCA+TGG | + | chr3.3:72760948-72760967 | None:intergenic | 50.0% | |
| CAAAGCAGCGTGAACTCAGT+GGG | - | chr3.3:72759600-72759619 | MS.gene75473:CDS | 50.0% | |
| CACCAGCAGGCTACAATTAC+AGG | + | chr3.3:72760828-72760847 | None:intergenic | 50.0% | |
| CAGCTGAAAAATCCCTGAGC+AGG | - | chr3.3:72760968-72760987 | MS.gene75473:CDS | 50.0% | |
| CTGTAATTGTAGCCTGCTGG+TGG | - | chr3.3:72760826-72760845 | MS.gene75473:intron | 50.0% | |
| CTTTCAGCAAGCCATGCTCA+GGG | - | chr3.3:72759243-72759262 | MS.gene75473:intron | 50.0% | |
| GAACGCGGTACAATTTCAGG+AGG | + | chr3.3:72759716-72759735 | None:intergenic | 50.0% | |
| GAAGCCTACCTCTATACCTG+AGG | - | chr3.3:72759574-72759593 | MS.gene75473:CDS | 50.0% | |
| GAATCAACAACAACGGGAGG+AGG | + | chr3.3:72758277-72758296 | None:intergenic | 50.0% | |
| GACTTACGAGTTACGACTCC+AGG | - | chr3.3:72760788-72760807 | MS.gene75473:intron | 50.0% | |
| GAGCTTCTTCTTCAGTGAGC+TGG | + | chr3.3:72758357-72758376 | None:intergenic | 50.0% | |
| GAGGAATCAACAACAACGGG+AGG | + | chr3.3:72758280-72758299 | None:intergenic | 50.0% | |
| GCACATGAGGACCAATCTTG+TGG | - | chr3.3:72760212-72760231 | MS.gene75473:intron | 50.0% | |
| GCGGAGGAATCAACAACAAC+GGG | + | chr3.3:72758283-72758302 | None:intergenic | 50.0% | |
| GCGGTACAATTTCAGGAGGA+GGG | + | chr3.3:72759712-72759731 | None:intergenic | 50.0% | |
| GCTACCTCAGGTATAGAGGT+AGG | + | chr3.3:72759581-72759600 | None:intergenic | 50.0% | |
| GGCGGAGGAATCAACAACAA+CGG | + | chr3.3:72758284-72758303 | None:intergenic | 50.0% | |
| GTTTGCGGGCACCTTTAACA+GGG | + | chr3.3:72761056-72761075 | None:intergenic | 50.0% | |
| TATCAGAAGGCTGACGAGAG+CGG | + | chr3.3:72758309-72758328 | None:intergenic | 50.0% | |
| TTCCATGGAGATGTTCCAGC+AGG | - | chr3.3:72760943-72760962 | MS.gene75473:CDS | 50.0% | |
| TTCCGACCAAGTGAGGAGAT+CGG | + | chr3.3:72758248-72758267 | None:intergenic | 50.0% | |
| TTCCGATCTCCTCACTTGGT+CGG | - | chr3.3:72758243-72758262 | MS.gene75473:CDS | 50.0% | |
| ! | AGTGAGGAGATCGGAAGTGT+TGG | + | chr3.3:72758239-72758258 | None:intergenic | 50.0% |
| ! | GGTAAACTGGTGGATGGTCA+AGG | + | chr3.3:72760028-72760047 | None:intergenic | 50.0% |
| !!! | TGTTTTTGGGTGTTGGGGGT+GGG | - | chr3.3:72760409-72760428 | MS.gene75473:intron | 50.0% |
| !!! | TTTTTTGGGGTGGGGGTTAG+GGG | - | chr3.3:72760101-72760120 | MS.gene75473:intron | 50.0% |
| AATGCTGCTGTCTCCACCAG+GGG | + | chr3.3:72761079-72761098 | None:intergenic | 55.0% | |
| ATCAGAAGGCTGACGAGAGC+GGG | + | chr3.3:72758308-72758327 | None:intergenic | 55.0% | |
| CAAAGTTCGTGCAGCTGCCA+TGG | + | chr3.3:72759738-72759757 | None:intergenic | 55.0% | |
| CAATGCTGCTGTCTCCACCA+GGG | + | chr3.3:72761080-72761099 | None:intergenic | 55.0% | |
| CATGGCAGCTGCACGAACTT+TGG | - | chr3.3:72759736-72759755 | MS.gene75473:CDS | 55.0% | |
| CGCGGTACAATTTCAGGAGG+AGG | + | chr3.3:72759713-72759732 | None:intergenic | 55.0% | |
| GAGGAACTTCCGACCAAGTG+AGG | + | chr3.3:72758255-72758274 | None:intergenic | 55.0% | |
| GCAAAGCAGCGTGAACTCAG+TGG | - | chr3.3:72759599-72759618 | MS.gene75473:CDS | 55.0% | |
| GCACATGCATTGCATCCGGA+AGG | - | chr3.3:72760310-72760329 | MS.gene75473:intron | 55.0% | |
| GGTTTGCGGGCACCTTTAAC+AGG | + | chr3.3:72761057-72761076 | None:intergenic | 55.0% | |
| TCAACAACAACGGGAGGAGG+AGG | + | chr3.3:72758274-72758293 | None:intergenic | 55.0% | |
| TCCAGTGAGCTCCTTGGTCT+TGG | + | chr3.3:72759675-72759694 | None:intergenic | 55.0% | |
| TCTCAGCTTTGCCCTGCTCA+GGG | + | chr3.3:72760983-72761002 | None:intergenic | 55.0% | |
| ! | TCACGCTGCTTTGCTACCTC+AGG | + | chr3.3:72759593-72759612 | None:intergenic | 55.0% |
| !!! | CTGTTTTTGGGTGTTGGGGG+TGG | - | chr3.3:72760408-72760427 | MS.gene75473:intron | 55.0% |
| !!! | GTTTTTGGGTGTTGGGGGTG+GGG | - | chr3.3:72760410-72760429 | MS.gene75473:intron | 55.0% |
| !!! | TTTTTGGGGTGGGGGTTAGG+GGG | - | chr3.3:72760102-72760121 | MS.gene75473:intron | 55.0% |
| ATGCTGCTGTCTCCACCAGG+GGG | + | chr3.3:72761078-72761097 | None:intergenic | 60.0% | |
| CTCTCAGCTTTGCCCTGCTC+AGG | + | chr3.3:72760984-72761003 | None:intergenic | 60.0% | |
| GCAATGCTGCTGTCTCCACC+AGG | + | chr3.3:72761081-72761100 | None:intergenic | 60.0% | |
| GCCAAGACCAAGGAGCTCAC+TGG | - | chr3.3:72759671-72759690 | MS.gene75473:CDS | 60.0% | |
| TGTCTCCACCAGGGGGTTTG+CGG | + | chr3.3:72761071-72761090 | None:intergenic | 60.0% | |
| AGAAGGCTGACGAGAGCGGG+TGG | + | chr3.3:72758305-72758324 | None:intergenic | 65.0% | |
| CGTGCAGCTGCCATGGAACG+CGG | + | chr3.3:72759731-72759750 | None:intergenic | 65.0% | |
| GTCTCCACCAGGGGGTTTGC+GGG | + | chr3.3:72761070-72761089 | None:intergenic | 65.0% | |
| !! | AAAGGTGCCCGCAAACCCCC+TGG | - | chr3.3:72761060-72761079 | MS.gene75473:CDS | 65.0% |
| AGGCTGACGAGAGCGGGTGG+CGG | + | chr3.3:72758302-72758321 | None:intergenic | 70.0% | |
| GGTGCCCGCAAACCCCCTGG+TGG | - | chr3.3:72761063-72761082 | MS.gene75473:CDS | 75.0% | |
| ! | CTGACGAGAGCGGGTGGCGG+AGG | + | chr3.3:72758299-72758318 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 72758205 | 72761110 | 72758205 | ID=MS.gene75473 |
| chr3.3 | mRNA | 72758205 | 72761110 | 72758205 | ID=MS.gene75473.t1;Parent=MS.gene75473 |
| chr3.3 | exon | 72760923 | 72761110 | 72760923 | ID=MS.gene75473.t1.exon1;Parent=MS.gene75473.t1 |
| chr3.3 | CDS | 72760923 | 72761110 | 72760923 | ID=cds.MS.gene75473.t1;Parent=MS.gene75473.t1 |
| chr3.3 | exon | 72759942 | 72760065 | 72759942 | ID=MS.gene75473.t1.exon2;Parent=MS.gene75473.t1 |
| chr3.3 | CDS | 72759942 | 72760065 | 72759942 | ID=cds.MS.gene75473.t1;Parent=MS.gene75473.t1 |
| chr3.3 | exon | 72759486 | 72759800 | 72759486 | ID=MS.gene75473.t1.exon3;Parent=MS.gene75473.t1 |
| chr3.3 | CDS | 72759486 | 72759800 | 72759486 | ID=cds.MS.gene75473.t1;Parent=MS.gene75473.t1 |
| chr3.3 | exon | 72758205 | 72758477 | 72758205 | ID=MS.gene75473.t1.exon4;Parent=MS.gene75473.t1 |
| chr3.3 | CDS | 72758205 | 72758477 | 72758205 | ID=cds.MS.gene75473.t1;Parent=MS.gene75473.t1 |
| Gene Sequence |
| Protein sequence |
