Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75645.t1 | XP_024635450.1 | 91.2 | 373 | 17 | 3 | 1 | 371 | 53 | 411 | 2.20E-190 | 674.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75645.t1 | G7JBC2 | 91.2 | 373 | 17 | 3 | 1 | 371 | 1 | 359 | 1.6e-190 | 674.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene75645.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene75645 | 0.812904 | 3.35E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene75645 | 0.816153 | 6.41E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene75645 | 0.808479 | 3.03E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene75645 | 0.824057 | 9.92E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene75645 | 0.808946 | 2.41E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene75645 | 0.817789 | 2.75E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene75645 | 0.804123 | 2.51E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene75645 | 0.821073 | 4.90E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene75645 | 0.806917 | 6.52E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene75645 | -0.809607 | 1.74E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene75645 | 0.801263 | 9.78E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene75645 | -0.819197 | 1.32E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75645.t1 | MTR_3g084750 | 90.885 | 373 | 18 | 3 | 1 | 371 | 53 | 411 | 0.0 | 664 |
| MS.gene75645.t1 | MTR_3g084750 | 90.617 | 373 | 19 | 3 | 1 | 371 | 1 | 359 | 0.0 | 662 |
| MS.gene75645.t1 | MTR_1g015930 | 46.185 | 249 | 130 | 3 | 44 | 292 | 50 | 294 | 3.41e-63 | 206 |
| MS.gene75645.t1 | MTR_1g019050 | 33.203 | 256 | 138 | 8 | 37 | 284 | 43 | 273 | 1.84e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75645.t1 | AT4G12240 | 56.977 | 344 | 126 | 5 | 38 | 371 | 30 | 361 | 3.38e-135 | 390 |
| MS.gene75645.t1 | AT5G52010 | 46.400 | 250 | 128 | 4 | 42 | 291 | 71 | 314 | 6.33e-63 | 206 |
Find 91 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTATTCTGAGCTTAT+TGG | 0.177466 | 3.3:+70914036 | None:intergenic |
| AGCTGAAACGGGCAGGGTTT+TGG | 0.228799 | 3.3:-70913640 | MS.gene75645:CDS |
| TATGTAGAGTAGGGCTGTTC+TGG | 0.246065 | 3.3:-70914105 | MS.gene75645:CDS |
| AGAATAGCTGCAGCTTCTTT+TGG | 0.246225 | 3.3:-70914025 | MS.gene75645:CDS |
| TGTCTCAAGACTGTTGTTAT+TGG | 0.251511 | 3.3:-70913467 | MS.gene75645:CDS |
| GTCTCAAGACTGTTGTTATT+GGG | 0.278322 | 3.3:-70913466 | MS.gene75645:CDS |
| AGGGAGTAGAAAGGTGAAAT+TGG | 0.313386 | 3.3:-70913750 | MS.gene75645:CDS |
| TGAGACGACACTGTCATTCT+TGG | 0.314624 | 3.3:-70914168 | MS.gene75645:CDS |
| GAGACGACACTGTCATTCTT+GGG | 0.319372 | 3.3:-70914167 | MS.gene75645:CDS |
| GGGTAAGTATGCTATGAAAA+TGG | 0.326589 | 3.3:-70913726 | MS.gene75645:CDS |
| TTCATAAGGTGGGATTGAAT+TGG | 0.333130 | 3.3:+70914063 | None:intergenic |
| TTGGGGTCACGGAAGGATTT+CGG | 0.339709 | 3.3:-70914149 | MS.gene75645:CDS |
| TCATAGGCGGGTTGAGTGTT+TGG | 0.351038 | 3.3:-70913546 | MS.gene75645:CDS |
| AGCTTATTGGCAACTTCATA+AGG | 0.365446 | 3.3:+70914049 | None:intergenic |
| ACAGGAACTGTTGTATCGTT+TGG | 0.373770 | 3.3:-70913921 | MS.gene75645:CDS |
| CTGTATCGGTTGTGGAAAAC+TGG | 0.377175 | 3.3:-70913355 | MS.gene75645:CDS |
| GTTGTATCGTTTGGAGGATA+AGG | 0.381598 | 3.3:-70913912 | MS.gene75645:CDS |
| CTCATGTTTGTCGTGTTTGT+GGG | 0.391232 | 3.3:-70913868 | MS.gene75645:CDS |
| GGGTTCAAACTGTGTTAGAT+AGG | 0.398462 | 3.3:-70913619 | MS.gene75645:CDS |
| CCTCATGTTTGTCGTGTTTG+TGG | 0.413883 | 3.3:-70913869 | MS.gene75645:CDS |
| GCCAAACCATACCCAACTTT+AGG | 0.418960 | 3.3:+70913668 | None:intergenic |
| TCCTAAAGTTGGGTATGGTT+TGG | 0.425982 | 3.3:-70913669 | MS.gene75645:CDS |
| TTGACTCCTAAAGTTGGGTA+TGG | 0.429889 | 3.3:-70913674 | MS.gene75645:CDS |
| TCATAAGGTGGGATTGAATT+GGG | 0.443856 | 3.3:+70914064 | None:intergenic |
| TTTGATGGGGAAGGCGAAGA+AGG | 0.453176 | 3.3:-70913381 | MS.gene75645:CDS |
| GATGCAGTTCCTAAAACATC+TGG | 0.457052 | 3.3:-70913257 | MS.gene75645:CDS |
| AAATTAGACTCCGATGATAA+TGG | 0.457209 | 3.3:-70913164 | MS.gene75645:CDS |
| TTGTATCGTTTGGAGGATAA+GGG | 0.462961 | 3.3:-70913911 | MS.gene75645:CDS |
| GCTGATGAGCTGAAACGGGC+AGG | 0.464292 | 3.3:-70913647 | MS.gene75645:CDS |
| TGGTGGATATGATGGATCAT+AGG | 0.472905 | 3.3:-70913562 | MS.gene75645:CDS |
| TCGTGATATATTGAAAAGAT+TGG | 0.474466 | 3.3:-70913327 | MS.gene75645:CDS |
| ATTGCTAAAAGTGTGGCTAT+TGG | 0.475645 | 3.3:+70913976 | None:intergenic |
| TGAGTGTTTGGTTCTTGTAT+CGG | 0.489683 | 3.3:-70913534 | MS.gene75645:CDS |
| TCTCAAGACTGTTGTTATTG+GGG | 0.494985 | 3.3:-70913465 | MS.gene75645:CDS |
| TATTGCATTGCAAAAGCATA+TGG | 0.499781 | 3.3:-70913582 | MS.gene75645:CDS |
| CACTGTCATTCTTGGGGTCA+CGG | 0.505218 | 3.3:-70914160 | MS.gene75645:CDS |
| ACTCTACATAGCTTCTCATT+CGG | 0.506498 | 3.3:+70914118 | None:intergenic |
| GAAGGAGGCTGTATCGGTTG+TGG | 0.514904 | 3.3:-70913363 | MS.gene75645:CDS |
| GCAGTGATGGAGTCTTGAAA+AGG | 0.516098 | 3.3:-70913436 | MS.gene75645:CDS |
| ATGTAGAGTAGGGCTGTTCT+GGG | 0.518539 | 3.3:-70914104 | MS.gene75645:CDS |
| GTTTGGCTGATGAGCTGAAA+CGG | 0.521781 | 3.3:-70913652 | MS.gene75645:CDS |
| GGCGAAGAAGGAGGCTGTAT+CGG | 0.522314 | 3.3:-70913369 | MS.gene75645:CDS |
| AAAGCATATGGTGGATATGA+TGG | 0.523680 | 3.3:-70913570 | MS.gene75645:CDS |
| GTCATTCTTGGGGTCACGGA+AGG | 0.525218 | 3.3:-70914156 | MS.gene75645:CDS |
| GGAACTGTTGTATCGTTTGG+AGG | 0.537669 | 3.3:-70913918 | MS.gene75645:CDS |
| GAAAATGGAAAAGTATAAGA+AGG | 0.542297 | 3.3:-70913711 | MS.gene75645:CDS |
| TCGTGAGAGGAGGAAAGAAC+AGG | 0.542932 | 3.3:-70913939 | MS.gene75645:CDS |
| CTCCTCTCACGAACAACGTG+GGG | 0.546733 | 3.3:+70913950 | None:intergenic |
| AATGAGAAGCTATGTAGAGT+AGG | 0.549536 | 3.3:-70914115 | MS.gene75645:CDS |
| AAGGCGGAATCAGATAGAAT+CGG | 0.553848 | 3.3:-70913777 | MS.gene75645:CDS |
| TATTGGCAACTTCATAAGGT+GGG | 0.553988 | 3.3:+70914053 | None:intergenic |
| CTATTGTGTAGAATATTCTA+CGG | 0.555084 | 3.3:+70914221 | None:intergenic |
| TTTGGCTGATGAGCTGAAAC+GGG | 0.555204 | 3.3:-70913651 | MS.gene75645:CDS |
| ACAAGGATGACAGAGGTCCT+TGG | 0.556458 | 3.3:-70913190 | MS.gene75645:CDS |
| TGGAGTTGTTCGACATATGG+TGG | 0.559762 | 3.3:-70914005 | MS.gene75645:CDS |
| ATGAGAAGCTATGTAGAGTA+GGG | 0.561703 | 3.3:-70914114 | MS.gene75645:CDS |
| CTGATGAGCTGAAACGGGCA+GGG | 0.566688 | 3.3:-70913646 | MS.gene75645:CDS |
| ATCGGCTAGAGGGAGTAGAA+AGG | 0.569230 | 3.3:-70913759 | MS.gene75645:CDS |
| AGAATATTCTACGGAACTTG+AGG | 0.572133 | 3.3:+70914230 | None:intergenic |
| GGATATGATGGATCATAGGC+GGG | 0.572337 | 3.3:-70913558 | MS.gene75645:CDS |
| GAGTAGAAAGGTGAAATTGG+TGG | 0.573655 | 3.3:-70913747 | MS.gene75645:CDS |
| ATCAGATAGAATCGGCTAGA+GGG | 0.575206 | 3.3:-70913769 | MS.gene75645:CDS |
| ATTTGCAACACCATTATCAT+CGG | 0.578456 | 3.3:+70913154 | None:intergenic |
| ATGAGCGTGAGCATGCGAAA+AGG | 0.580807 | 3.3:-70913796 | MS.gene75645:CDS |
| TAAGGTGGGATTGAATTGGG+TGG | 0.598304 | 3.3:+70914067 | None:intergenic |
| TCCTCCTCTCACGAACAACG+TGG | 0.601028 | 3.3:+70913948 | None:intergenic |
| AACAAATGTTTGAATGCCAG+TGG | 0.602266 | 3.3:+70914195 | None:intergenic |
| AGAATGACAGTGTCGTCTCA+AGG | 0.604787 | 3.3:+70914171 | None:intergenic |
| CCCACGTTGTTCGTGAGAGG+AGG | 0.604916 | 3.3:-70913949 | MS.gene75645:CDS |
| AATGCAATATCCGCAGCTTG+CGG | 0.606975 | 3.3:+70913596 | None:intergenic |
| AGACGACACTGTCATTCTTG+GGG | 0.607766 | 3.3:-70914166 | MS.gene75645:CDS |
| AGTAGAAAGGTGAAATTGGT+GGG | 0.609374 | 3.3:-70913746 | MS.gene75645:CDS |
| TGCATTGCAAAAGCATATGG+TGG | 0.610349 | 3.3:-70913579 | MS.gene75645:CDS |
| TTCTACACAATAGAAGCCAC+TGG | 0.610989 | 3.3:-70914211 | MS.gene75645:CDS |
| GTGGACATATAACCCAGAAG+TGG | 0.612100 | 3.3:-70913303 | MS.gene75645:CDS |
| TTATTGGCAACTTCATAAGG+TGG | 0.612373 | 3.3:+70914052 | None:intergenic |
| CCTCCTCTCACGAACAACGT+GGG | 0.620111 | 3.3:+70913949 | None:intergenic |
| GATGGGGAAGGCGAAGAAGG+AGG | 0.621967 | 3.3:-70913378 | MS.gene75645:CDS |
| AATCAGATAGAATCGGCTAG+AGG | 0.623094 | 3.3:-70913770 | MS.gene75645:CDS |
| ATGTTTGTCGTGTTTGTGGG+AGG | 0.623967 | 3.3:-70913865 | MS.gene75645:CDS |
| AGCGTGAGCATGCGAAAAGG+CGG | 0.626856 | 3.3:-70913793 | MS.gene75645:CDS |
| AGGATGACAGAGGTCCTTGG+TGG | 0.631079 | 3.3:-70913187 | MS.gene75645:CDS |
| GTTAGATAGGCCGCAAGCTG+CGG | 0.632475 | 3.3:-70913606 | MS.gene75645:CDS |
| TCATATTGATGATGACTACA+AGG | 0.634259 | 3.3:-70913207 | MS.gene75645:CDS |
| TTATGAAGGAAGCAAAGCTA+CGG | 0.640003 | 3.3:-70913490 | MS.gene75645:CDS |
| TGGATATGATGGATCATAGG+CGG | 0.652070 | 3.3:-70913559 | MS.gene75645:CDS |
| ATATATTGAAAAGATTGGAG+TGG | 0.659405 | 3.3:-70913322 | MS.gene75645:CDS |
| CCACAAACACGACAAACATG+AGG | 0.661362 | 3.3:+70913869 | None:intergenic |
| TCCTCTCACGAACAACGTGG+GGG | 0.698129 | 3.3:+70913951 | None:intergenic |
| TCGGAGTCTAATTTCCACCA+AGG | 0.709650 | 3.3:+70913173 | None:intergenic |
| GATGACTACAAGGATGACAG+AGG | 0.730694 | 3.3:-70913197 | MS.gene75645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATATTGAAAAGATTGGAG+TGG | - | chr3.3:70914067-70914086 | MS.gene75645:CDS | 25.0% |
| ! | CTATTGTGTAGAATATTCTA+CGG | + | chr3.3:70913171-70913190 | None:intergenic | 25.0% |
| ! | TCGTGATATATTGAAAAGAT+TGG | - | chr3.3:70914062-70914081 | MS.gene75645:CDS | 25.0% |
| !! | GAAAATGGAAAAGTATAAGA+AGG | - | chr3.3:70913678-70913697 | MS.gene75645:CDS | 25.0% |
| AAATTAGACTCCGATGATAA+TGG | - | chr3.3:70914225-70914244 | MS.gene75645:CDS | 30.0% | |
| ATTTGCAACACCATTATCAT+CGG | + | chr3.3:70914238-70914257 | None:intergenic | 30.0% | |
| GGATAAAAAGAAACACAACT+TGG | - | chr3.3:70914107-70914126 | MS.gene75645:CDS | 30.0% | |
| ! | GTTTCTTTTTATCCACTTCT+GGG | + | chr3.3:70914101-70914120 | None:intergenic | 30.0% |
| ! | TATTGCATTGCAAAAGCATA+TGG | - | chr3.3:70913807-70913826 | MS.gene75645:CDS | 30.0% |
| ! | TGATTTTGTCGATGTTATGA+AGG | - | chr3.3:70913885-70913904 | MS.gene75645:CDS | 30.0% |
| ! | TGTTTCTTTTTATCCACTTC+TGG | + | chr3.3:70914102-70914121 | None:intergenic | 30.0% |
| !! | TCATATTGATGATGACTACA+AGG | - | chr3.3:70914182-70914201 | MS.gene75645:CDS | 30.0% |
| AACAAATGTTTGAATGCCAG+TGG | + | chr3.3:70913197-70913216 | None:intergenic | 35.0% | |
| AATGAGAAGCTATGTAGAGT+AGG | - | chr3.3:70913274-70913293 | MS.gene75645:CDS | 35.0% | |
| ACTCTACATAGCTTCTCATT+CGG | + | chr3.3:70913274-70913293 | None:intergenic | 35.0% | |
| AGAATATTCTACGGAACTTG+AGG | + | chr3.3:70913162-70913181 | None:intergenic | 35.0% | |
| AGCTTATTGGCAACTTCATA+AGG | + | chr3.3:70913343-70913362 | None:intergenic | 35.0% | |
| AGTAGAAAGGTGAAATTGGT+GGG | - | chr3.3:70913643-70913662 | MS.gene75645:CDS | 35.0% | |
| ATGAGAAGCTATGTAGAGTA+GGG | - | chr3.3:70913275-70913294 | MS.gene75645:CDS | 35.0% | |
| GGGTAAGTATGCTATGAAAA+TGG | - | chr3.3:70913663-70913682 | MS.gene75645:CDS | 35.0% | |
| TATTGGCAACTTCATAAGGT+GGG | + | chr3.3:70913339-70913358 | None:intergenic | 35.0% | |
| TCATAAGGTGGGATTGAATT+GGG | + | chr3.3:70913328-70913347 | None:intergenic | 35.0% | |
| TGTCTCAAGACTGTTGTTAT+TGG | - | chr3.3:70913922-70913941 | MS.gene75645:CDS | 35.0% | |
| TTATGAAGGAAGCAAAGCTA+CGG | - | chr3.3:70913899-70913918 | MS.gene75645:CDS | 35.0% | |
| TTATTGGCAACTTCATAAGG+TGG | + | chr3.3:70913340-70913359 | None:intergenic | 35.0% | |
| TTCATAAGGTGGGATTGAAT+TGG | + | chr3.3:70913329-70913348 | None:intergenic | 35.0% | |
| TTGTATCGTTTGGAGGATAA+GGG | - | chr3.3:70913478-70913497 | MS.gene75645:CDS | 35.0% | |
| ! | ATTGCTAAAAGTGTGGCTAT+TGG | + | chr3.3:70913416-70913435 | None:intergenic | 35.0% |
| ! | GTCTCAAGACTGTTGTTATT+GGG | - | chr3.3:70913923-70913942 | MS.gene75645:CDS | 35.0% |
| ! | TCATCAACTCCAGATGTTTT+AGG | + | chr3.3:70914144-70914163 | None:intergenic | 35.0% |
| ! | TCTCAAGACTGTTGTTATTG+GGG | - | chr3.3:70913924-70913943 | MS.gene75645:CDS | 35.0% |
| !! | AAAGCATATGGTGGATATGA+TGG | - | chr3.3:70913819-70913838 | MS.gene75645:CDS | 35.0% |
| !! | TGAGTGTTTGGTTCTTGTAT+CGG | - | chr3.3:70913855-70913874 | MS.gene75645:CDS | 35.0% |
| !! | TTCTTGGGAGGATATTTTGA+TGG | - | chr3.3:70913993-70914012 | MS.gene75645:CDS | 35.0% |
| !!! | CTGTTTTGACTCCTAAAGTT+GGG | - | chr3.3:70913710-70913729 | MS.gene75645:CDS | 35.0% |
| !!! | TCTTGGGAGGATATTTTGAT+GGG | - | chr3.3:70913994-70914013 | MS.gene75645:CDS | 35.0% |
| !!! | TTTTGGAGTTGTTCGACATA+TGG | - | chr3.3:70913381-70913400 | MS.gene75645:CDS | 35.0% |
| AAGGCGGAATCAGATAGAAT+CGG | - | chr3.3:70913612-70913631 | MS.gene75645:CDS | 40.0% | |
| AATCAGATAGAATCGGCTAG+AGG | - | chr3.3:70913619-70913638 | MS.gene75645:CDS | 40.0% | |
| ACAGGAACTGTTGTATCGTT+TGG | - | chr3.3:70913468-70913487 | MS.gene75645:CDS | 40.0% | |
| AGGGAGTAGAAAGGTGAAAT+TGG | - | chr3.3:70913639-70913658 | MS.gene75645:CDS | 40.0% | |
| ATCAGATAGAATCGGCTAGA+GGG | - | chr3.3:70913620-70913639 | MS.gene75645:CDS | 40.0% | |
| CTCATGTTTGTCGTGTTTGT+GGG | - | chr3.3:70913521-70913540 | MS.gene75645:CDS | 40.0% | |
| CTCCCAAGAAAAAGCAGTAT+CGG | + | chr3.3:70913983-70914002 | None:intergenic | 40.0% | |
| GAGTAGAAAGGTGAAATTGG+TGG | - | chr3.3:70913642-70913661 | MS.gene75645:CDS | 40.0% | |
| GATGCAGTTCCTAAAACATC+TGG | - | chr3.3:70914132-70914151 | MS.gene75645:CDS | 40.0% | |
| GGGTTCAAACTGTGTTAGAT+AGG | - | chr3.3:70913770-70913789 | MS.gene75645:CDS | 40.0% | |
| GTTGTATCGTTTGGAGGATA+AGG | - | chr3.3:70913477-70913496 | MS.gene75645:CDS | 40.0% | |
| TCCTAAAGTTGGGTATGGTT+TGG | - | chr3.3:70913720-70913739 | MS.gene75645:CDS | 40.0% | |
| TGCAGCTATTCTGAGCTTAT+TGG | + | chr3.3:70913356-70913375 | None:intergenic | 40.0% | |
| TTCTACACAATAGAAGCCAC+TGG | - | chr3.3:70913178-70913197 | MS.gene75645:CDS | 40.0% | |
| TTGACTCCTAAAGTTGGGTA+TGG | - | chr3.3:70913715-70913734 | MS.gene75645:CDS | 40.0% | |
| ! | AGAATAGCTGCAGCTTCTTT+TGG | - | chr3.3:70913364-70913383 | MS.gene75645:CDS | 40.0% |
| ! | TGCATTGCAAAAGCATATGG+TGG | - | chr3.3:70913810-70913829 | MS.gene75645:CDS | 40.0% |
| !! | ATTGGGGATTTTAGCAGTGA+TGG | - | chr3.3:70913940-70913959 | MS.gene75645:CDS | 40.0% |
| !! | TGGATATGATGGATCATAGG+CGG | - | chr3.3:70913830-70913849 | MS.gene75645:CDS | 40.0% |
| !! | TGGTGGATATGATGGATCAT+AGG | - | chr3.3:70913827-70913846 | MS.gene75645:CDS | 40.0% |
| !!! | CTTGGGAGGATATTTTGATG+GGG | - | chr3.3:70913995-70914014 | MS.gene75645:CDS | 40.0% |
| !!! | GCTGTTTTGACTCCTAAAGT+TGG | - | chr3.3:70913709-70913728 | MS.gene75645:CDS | 40.0% |
| !!! | TGCCGATACTGCTTTTTCTT+GGG | - | chr3.3:70913978-70913997 | MS.gene75645:CDS | 40.0% |
| AATGCAATATCCGCAGCTTG+CGG | + | chr3.3:70913796-70913815 | None:intergenic | 45.0% | |
| AGAATGACAGTGTCGTCTCA+AGG | + | chr3.3:70913221-70913240 | None:intergenic | 45.0% | |
| AGACGACACTGTCATTCTTG+GGG | - | chr3.3:70913223-70913242 | MS.gene75645:CDS | 45.0% | |
| ATGTAGAGTAGGGCTGTTCT+GGG | - | chr3.3:70913285-70913304 | MS.gene75645:CDS | 45.0% | |
| ATGTTTGTCGTGTTTGTGGG+AGG | - | chr3.3:70913524-70913543 | MS.gene75645:CDS | 45.0% | |
| CCACAAACACGACAAACATG+AGG | + | chr3.3:70913523-70913542 | None:intergenic | 45.0% | |
| CCTCATGTTTGTCGTGTTTG+TGG | - | chr3.3:70913520-70913539 | MS.gene75645:CDS | 45.0% | |
| GAGACGACACTGTCATTCTT+GGG | - | chr3.3:70913222-70913241 | MS.gene75645:CDS | 45.0% | |
| GATGACTACAAGGATGACAG+AGG | - | chr3.3:70914192-70914211 | MS.gene75645:CDS | 45.0% | |
| GCCAAACCATACCCAACTTT+AGG | + | chr3.3:70913724-70913743 | None:intergenic | 45.0% | |
| GGAACTGTTGTATCGTTTGG+AGG | - | chr3.3:70913471-70913490 | MS.gene75645:CDS | 45.0% | |
| GTGGACATATAACCCAGAAG+TGG | - | chr3.3:70914086-70914105 | MS.gene75645:CDS | 45.0% | |
| GTTTGGCTGATGAGCTGAAA+CGG | - | chr3.3:70913737-70913756 | MS.gene75645:CDS | 45.0% | |
| TAAGGTGGGATTGAATTGGG+TGG | + | chr3.3:70913325-70913344 | None:intergenic | 45.0% | |
| TATGTAGAGTAGGGCTGTTC+TGG | - | chr3.3:70913284-70913303 | MS.gene75645:CDS | 45.0% | |
| TCGGAGTCTAATTTCCACCA+AGG | + | chr3.3:70914219-70914238 | None:intergenic | 45.0% | |
| TGAGACGACACTGTCATTCT+TGG | - | chr3.3:70913221-70913240 | MS.gene75645:CDS | 45.0% | |
| TGGAGTTGTTCGACATATGG+TGG | - | chr3.3:70913384-70913403 | MS.gene75645:CDS | 45.0% | |
| TTTGGCTGATGAGCTGAAAC+GGG | - | chr3.3:70913738-70913757 | MS.gene75645:CDS | 45.0% | |
| ! | GCAGTGATGGAGTCTTGAAA+AGG | - | chr3.3:70913953-70913972 | MS.gene75645:CDS | 45.0% |
| !! | CTGTATCGGTTGTGGAAAAC+TGG | - | chr3.3:70914034-70914053 | MS.gene75645:CDS | 45.0% |
| !! | GGATATGATGGATCATAGGC+GGG | - | chr3.3:70913831-70913850 | MS.gene75645:CDS | 45.0% |
| !!! | CGATACTGCTTTTTCTTGGG+AGG | - | chr3.3:70913981-70914000 | MS.gene75645:CDS | 45.0% |
| !!! | CTGCCGATACTGCTTTTTCT+TGG | - | chr3.3:70913977-70913996 | MS.gene75645:CDS | 45.0% |
| !!! | GGAGGATATTTTGATGGGGA+AGG | - | chr3.3:70913999-70914018 | MS.gene75645:CDS | 45.0% |
| ACAAGGATGACAGAGGTCCT+TGG | - | chr3.3:70914199-70914218 | MS.gene75645:CDS | 50.0% | |
| ATCGGCTAGAGGGAGTAGAA+AGG | - | chr3.3:70913630-70913649 | MS.gene75645:CDS | 50.0% | |
| ATGAGCGTGAGCATGCGAAA+AGG | - | chr3.3:70913593-70913612 | MS.gene75645:CDS | 50.0% | |
| CACTGTCATTCTTGGGGTCA+CGG | - | chr3.3:70913229-70913248 | MS.gene75645:CDS | 50.0% | |
| GGGGGACATTGCTAAAAGTG+TGG | + | chr3.3:70913423-70913442 | None:intergenic | 50.0% | |
| TCGTGAGAGGAGGAAAGAAC+AGG | - | chr3.3:70913450-70913469 | MS.gene75645:CDS | 50.0% | |
| TTGGGGTCACGGAAGGATTT+CGG | - | chr3.3:70913240-70913259 | MS.gene75645:CDS | 50.0% | |
| TTTGATGGGGAAGGCGAAGA+AGG | - | chr3.3:70914008-70914027 | MS.gene75645:CDS | 50.0% | |
| !! | TCATAGGCGGGTTGAGTGTT+TGG | - | chr3.3:70913843-70913862 | MS.gene75645:CDS | 50.0% |
| AGCGTGAGCATGCGAAAAGG+CGG | - | chr3.3:70913596-70913615 | MS.gene75645:CDS | 55.0% | |
| AGGATGACAGAGGTCCTTGG+TGG | - | chr3.3:70914202-70914221 | MS.gene75645:CDS | 55.0% | |
| CCTCCTCTCACGAACAACGT+GGG | + | chr3.3:70913443-70913462 | None:intergenic | 55.0% | |
| CTCCTCTCACGAACAACGTG+GGG | + | chr3.3:70913442-70913461 | None:intergenic | 55.0% | |
| CTGATGAGCTGAAACGGGCA+GGG | - | chr3.3:70913743-70913762 | MS.gene75645:CDS | 55.0% | |
| GGCGAAGAAGGAGGCTGTAT+CGG | - | chr3.3:70914020-70914039 | MS.gene75645:CDS | 55.0% | |
| GTCATTCTTGGGGTCACGGA+AGG | - | chr3.3:70913233-70913252 | MS.gene75645:CDS | 55.0% | |
| GTTAGATAGGCCGCAAGCTG+CGG | - | chr3.3:70913783-70913802 | MS.gene75645:CDS | 55.0% | |
| TCCTCCTCTCACGAACAACG+TGG | + | chr3.3:70913444-70913463 | None:intergenic | 55.0% | |
| TCCTCTCACGAACAACGTGG+GGG | + | chr3.3:70913441-70913460 | None:intergenic | 55.0% | |
| ! | AGCTGAAACGGGCAGGGTTT+TGG | - | chr3.3:70913749-70913768 | MS.gene75645:CDS | 55.0% |
| ! | GCTGAAACGGGCAGGGTTTT+GGG | - | chr3.3:70913750-70913769 | MS.gene75645:CDS | 55.0% |
| !! | GAAGGAGGCTGTATCGGTTG+TGG | - | chr3.3:70914026-70914045 | MS.gene75645:CDS | 55.0% |
| CCCACGTTGTTCGTGAGAGG+AGG | - | chr3.3:70913440-70913459 | MS.gene75645:CDS | 60.0% | |
| GATGGGGAAGGCGAAGAAGG+AGG | - | chr3.3:70914011-70914030 | MS.gene75645:CDS | 60.0% | |
| GCTGATGAGCTGAAACGGGC+AGG | - | chr3.3:70913742-70913761 | MS.gene75645:CDS | 60.0% | |
| TCCCCCACGTTGTTCGTGAG+AGG | - | chr3.3:70913437-70913456 | MS.gene75645:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 70913148 | 70914263 | 70913148 | ID=MS.gene75645 |
| chr3.3 | mRNA | 70913148 | 70914263 | 70913148 | ID=MS.gene75645.t1;Parent=MS.gene75645 |
| chr3.3 | exon | 70913148 | 70914263 | 70913148 | ID=MS.gene75645.t1.exon1;Parent=MS.gene75645.t1 |
| chr3.3 | CDS | 70913148 | 70914263 | 70913148 | ID=cds.MS.gene75645.t1;Parent=MS.gene75645.t1 |
| Gene Sequence |
| Protein sequence |
