AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75713


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75713.t1 MTR_3g083550 98.387 248 3 1 1 247 1 248 4.36e-166 459
MS.gene75713.t1 MTR_1g054675 67.949 156 28 4 38 187 41 180 1.00e-59 188
MS.gene75713.t1 MTR_5g079870 65.169 89 31 0 41 129 48 136 7.23e-38 133
MS.gene75713.t1 MTR_5g079870 65.169 89 31 0 41 129 48 136 1.24e-37 133
MS.gene75713.t1 MTR_4g118630 61.538 91 35 0 38 128 46 136 1.16e-34 126
MS.gene75713.t1 MTR_5g079870 62.745 51 19 0 79 129 10 60 7.83e-16 74.3
MS.gene75713.t1 MTR_4g094235 41.558 77 45 0 41 117 17 93 8.41e-13 67.0
MS.gene75713.t1 MTR_4g094235 41.558 77 45 0 41 117 17 93 8.48e-13 67.0
MS.gene75713.t1 MTR_5g070450 40.260 77 46 0 41 117 17 93 5.67e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75713.t1 AT3G13570 62.651 249 74 8 1 247 1 232 1.58e-76 232
MS.gene75713.t1 AT1G55310 62.771 231 71 5 1 231 1 216 9.87e-72 219
MS.gene75713.t1 AT1G55310 62.771 231 71 5 1 231 1 216 9.87e-72 219
MS.gene75713.t1 AT1G55310 63.677 223 66 5 1 223 1 208 1.90e-69 215
MS.gene75713.t1 AT1G55310 60.426 235 66 6 1 223 1 220 3.86e-66 207
MS.gene75713.t1 AT5G18810 57.407 108 46 0 35 142 42 149 5.04e-37 130
MS.gene75713.t1 AT5G18810 57.407 108 46 0 35 142 42 149 5.18e-37 130
MS.gene75713.t1 AT3G55460 57.895 95 40 0 42 136 49 143 3.28e-34 124
MS.gene75713.t1 AT1G55310 55.882 136 48 5 89 223 1 125 1.22e-27 105
MS.gene75713.t1 AT1G55310 55.882 136 48 5 89 223 1 125 1.22e-27 105
MS.gene75713.t1 AT1G55310 56.296 135 48 4 89 223 1 124 1.33e-21 89.4
MS.gene75713.t1 AT5G64200 39.130 92 54 1 41 130 17 108 1.76e-13 68.9
MS.gene75713.t1 AT5G64200 39.130 92 54 1 41 130 17 108 1.76e-13 68.9

Find 95 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAGACCTTTCGGTCATTT+TGG 0.233664 3.3:-70200728 MS.gene75713:CDS
GCTTCTCACATCCCCGTTCT+TGG 0.247700 3.3:+70198625 None:intergenic
CTCGTTCACCCCGCTATTCC+CGG 0.259956 3.3:-70199071 MS.gene75713:CDS
TAACCCAGTGTAATAATCTT+TGG 0.277366 3.3:+70200682 None:intergenic
TACAGGCAACCTCGTGGTTT+TGG 0.283342 3.3:-70200251 MS.gene75713:intron
CTTGAATATTCCCTTCGTTT+AGG 0.306626 3.3:+70198991 None:intergenic
AACCCAGTGTAATAATCTTT+GGG 0.338449 3.3:+70200683 None:intergenic
ATGGATGGTCAAGTTCTTCT+TGG 0.350938 3.3:-70200179 MS.gene75713:CDS
TCTCTTCCATTGTCACTGAC+TGG 0.377083 3.3:+70198514 None:intergenic
CACGCTCTCCACCCAAGAAC+GGG 0.377947 3.3:-70198637 MS.gene75713:CDS
CAAGTCCGAGCCGTGATGTC+AGG 0.383176 3.3:-70198559 MS.gene75713:CDS
AAAGGTCTACGGAGATCTTC+AGG 0.385331 3.3:+70200740 None:intergenic
CTTCTCACATCCCCGTTCTT+GGG 0.393169 3.3:+70198626 None:intergenic
GAAGATCTCCGTAGACCTTT+CGG 0.405470 3.3:-70200737 MS.gene75713:CDS
CTGTATCACCTGAGGATAGA+AGG 0.408964 3.3:-70198703 MS.gene75713:CDS
AGGTGGAGACCGGGAATAGC+GGG 0.413550 3.3:+70199062 None:intergenic
ATCTGTGACGAGGTGGAGAC+CGG 0.419316 3.3:+70199052 None:intergenic
TACAGCAGAAGAGGCGGCGG+AGG 0.422786 3.3:-70200857 MS.gene75713:CDS
AGCAGAAGAGGCGGCGGAGG+AGG 0.424350 3.3:-70200854 MS.gene75713:CDS
CTCTCGACTGAGCCTTTCAC+TGG 0.429082 3.3:+70198590 None:intergenic
GGGAGATAAATATCCTTAAG+AGG 0.431391 3.3:+70200704 None:intergenic
CTCTTCCATTGTCACTGACT+GGG 0.434177 3.3:+70198515 None:intergenic
CTGACATCACGGCTCGGACT+TGG 0.436240 3.3:+70198560 None:intergenic
CTTTCACTGGACTCTGACTA+CGG 0.452235 3.3:+70198603 None:intergenic
CTAAACGAAGGGAATATTCA+AGG 0.464257 3.3:-70198990 MS.gene75713:intron
CTCCCCAAAGATTATTACAC+TGG 0.473935 3.3:-70200686 MS.gene75713:CDS
CTGTAACGCGGTGGTGGAGA+TGG 0.491469 3.3:+70200875 None:intergenic
CTTCTGCTGTAACGCGGTGG+TGG 0.495589 3.3:+70200869 None:intergenic
GGTAGGTAGATCGCTTTGAC+GGG 0.497430 3.3:+70200799 None:intergenic
GCGTAACGCCGGCGAGGACT+TGG 0.497603 3.3:+70200824 None:intergenic
TCTCTGACCCTCATCTCAGT+TGG 0.506671 3.3:+70200113 None:intergenic
TTCCCTTCGTTTAGGAGGAG+GGG 0.509465 3.3:+70198999 None:intergenic
TGGTAGGTAGATCGCTTTGA+CGG 0.523524 3.3:+70200798 None:intergenic
ATGGTCAAGTTCTTCTTGGT+AGG 0.524497 3.3:-70200175 MS.gene75713:CDS
TATTCCCTTCGTTTAGGAGG+AGG 0.525431 3.3:+70198997 None:intergenic
TGGTCAAGTTCTTCTTGGTA+GGG 0.533607 3.3:-70200174 MS.gene75713:CDS
CGACTGTGCCTTCTATCCTC+AGG 0.535468 3.3:+70198695 None:intergenic
CTCACATCCCCGTTCTTGGG+TGG 0.544494 3.3:+70198629 None:intergenic
ATTCCCTTCGTTTAGGAGGA+GGG 0.548091 3.3:+70198998 None:intergenic
TCTGTGACGAGGTGGAGACC+GGG 0.551287 3.3:+70199053 None:intergenic
GATAGAAGGCACAGTCGAGA+AGG 0.551688 3.3:-70198689 MS.gene75713:CDS
CCACCGCGTTACAGCAGAAG+AGG 0.552873 3.3:-70200866 MS.gene75713:CDS
TTCGCATCAGCAGCATCCGC+AGG 0.554382 3.3:+70200209 None:intergenic
CAAAATGACCGAAAGGTCTA+CGG 0.557171 3.3:+70200729 None:intergenic
CATGGCGAAGGTTACGAACA+AGG 0.560608 3.3:+70200771 None:intergenic
AAGTCCGAGCCGTGATGTCA+GGG 0.561984 3.3:-70198558 MS.gene75713:CDS
GAGGTGGAGACCGGGAATAG+CGG 0.564550 3.3:+70199061 None:intergenic
GAATATTCCCTTCGTTTAGG+AGG 0.564905 3.3:+70198994 None:intergenic
GATCTTCAGGCCTACAGTCA+TGG 0.565387 3.3:+70200753 None:intergenic
CGTAGTCAGAGTCCAGTGAA+AGG 0.572092 3.3:-70198602 MS.gene75713:CDS
TCACGCTCTCCACCCAAGAA+CGG 0.579197 3.3:-70198638 MS.gene75713:CDS
TGCTGATGCGAAATATCATA+TGG 0.579685 3.3:-70200198 MS.gene75713:CDS
GAAAGAAGCCAACTGAGATG+AGG 0.582129 3.3:-70200121 MS.gene75713:CDS
GTAACCTTCGCCATGACTGT+AGG 0.586128 3.3:-70200763 MS.gene75713:CDS
GAAGAAGTCCAAGTCCTCGC+CGG 0.586465 3.3:-70200832 MS.gene75713:CDS
TCAGGGAAGCATCCCGCAGT+AGG 0.587173 3.3:-70198541 MS.gene75713:CDS
GCTTCCCTGACATCACGGCT+CGG 0.592080 3.3:+70198554 None:intergenic
TTTGACGGGGAGCGTAACGC+CGG 0.593260 3.3:+70200813 None:intergenic
TTCCCCTCCTCCTAAACGAA+GGG 0.597370 3.3:-70199001 MS.gene75713:CDS
TCCCCAAAGATTATTACACT+GGG 0.598302 3.3:-70200685 MS.gene75713:intron
AAAGAAGCCAACTGAGATGA+GGG 0.598374 3.3:-70200120 MS.gene75713:CDS
AAGGTTACGAACAAGGAGAC+TGG 0.604315 3.3:+70200778 None:intergenic
CGGGGTGAACGAGAATAACG+TGG 0.606363 3.3:+70199081 None:intergenic
TTGTAGATCTGTATCACCTG+AGG 0.616753 3.3:-70198711 MS.gene75713:intron
TATTCAATTTGTGGATCCTG+CGG 0.619040 3.3:-70200225 MS.gene75713:CDS
CCTCTTCTGCTGTAACGCGG+TGG 0.622436 3.3:+70200866 None:intergenic
AGATGAGGGTCAGAGAGAGA+AGG 0.623453 3.3:-70200106 MS.gene75713:intron
ATTCCCCTCCTCCTAAACGA+AGG 0.624660 3.3:-70199002 MS.gene75713:CDS
CGTTGTCATCTGAAGATGAG+AGG 0.624703 3.3:-70200911 None:intergenic
CGTTACAGCAGAAGAGGCGG+CGG 0.624756 3.3:-70200860 MS.gene75713:CDS
GGGATGCTTCCCTGACATCA+CGG 0.627142 3.3:+70198549 None:intergenic
CCGCCTCTTCTGCTGTAACG+CGG 0.629314 3.3:+70200863 None:intergenic
GCGGTCGTCATTCTGATCGA+AGG 0.629847 3.3:-70199113 MS.gene75713:CDS
ACCCAGTGTAATAATCTTTG+GGG 0.631656 3.3:+70200684 None:intergenic
GGTGGAGACCGGGAATAGCG+GGG 0.633611 3.3:+70199063 None:intergenic
GTCGTCATTCTGATCGAAGG+AGG 0.634775 3.3:-70199110 MS.gene75713:CDS
GAGCGAGATCTGTGACGAGG+TGG 0.637564 3.3:+70199045 None:intergenic
CAGGCCTACAGTCATGGCGA+AGG 0.637832 3.3:+70200759 None:intergenic
GATGCGAAATATCATATGGA+TGG 0.642241 3.3:-70200194 MS.gene75713:CDS
AGAGGACCAAAATGACCGAA+AGG 0.644554 3.3:+70200722 None:intergenic
CTGACTGGGAGACCTACTGC+GGG 0.645256 3.3:+70198529 None:intergenic
GATCACAACACAGCAGAGAG+AGG 0.645731 3.3:-70198667 MS.gene75713:CDS
CCGCGTTACAGCAGAAGAGG+CGG 0.649844 3.3:-70200863 MS.gene75713:CDS
CGGGGAGCGTAACGCCGGCG+AGG 0.649965 3.3:+70200818 None:intergenic
TTACGAACAAGGAGACTGGT+AGG 0.662391 3.3:+70200782 None:intergenic
ACGCTCTCCACCCAAGAACG+GGG 0.664146 3.3:-70198636 MS.gene75713:CDS
CGTCACAGATCTCGCTCTCG+CGG 0.666167 3.3:-70199039 MS.gene75713:CDS
GGGGTGAACGAGAATAACGT+GGG 0.666188 3.3:+70199082 None:intergenic
CGAGAGCGAGATCTGTGACG+AGG 0.668387 3.3:+70199042 None:intergenic
ACTGACTGGGAGACCTACTG+CGG 0.671960 3.3:+70198528 None:intergenic
GCTTTCTACAGGCAACCTCG+TGG 0.675676 3.3:-70200257 MS.gene75713:intron
GTAGGTAGATCGCTTTGACG+GGG 0.676212 3.3:+70200800 None:intergenic
GGGTGAACGAGAATAACGTG+GGG 0.732637 3.3:+70199083 None:intergenic
GGTGAACGAGAATAACGTGG+GGG 0.773739 3.3:+70199084 None:intergenic
TGAATAAAACCAAAACCACG+AGG 0.777977 3.3:+70200242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTTTAATTATA+AGG - chr3.3:70200668-70200687 MS.gene75713:intron 0.0%
!! TTTGTATTTACTTAAAATAA+TGG - chr3.3:70200500-70200519 MS.gene75713:intron 10.0%
!! GTAAATGATGATAATAAATA+AGG + chr3.3:70200167-70200186 None:intergenic 15.0%
!! TGATTTGATCTTATATTATT+GGG - chr3.3:70199029-70199048 MS.gene75713:CDS 15.0%
!! TTTAATAATTGTGAGAAATT+AGG - chr3.3:70198863-70198882 MS.gene75713:intron 15.0%
!!! AAAATTTAGGGTTATATTAT+TGG - chr3.3:70198831-70198850 MS.gene75713:intron 15.0%
!!! AAATTTAGGGTTATATTATT+GGG - chr3.3:70198832-70198851 MS.gene75713:intron 15.0%
!!! TTGATTTGATCTTATATTAT+TGG - chr3.3:70199028-70199047 MS.gene75713:CDS 15.0%
!! AACAACAATCATTTAAACTT+TGG + chr3.3:70200142-70200161 None:intergenic 20.0%
!! AACAGTATACTTATAAGTAT+TGG + chr3.3:70200189-70200208 None:intergenic 20.0%
!! ATTATTGTTGAAATTCAAAG+TGG + chr3.3:70199488-70199507 None:intergenic 20.0%
!! ATTGAATGCTTTCAAAATTT+AGG - chr3.3:70198818-70198837 MS.gene75713:intron 20.0%
!! GATTGTTTATATGCAAATAA+GGG + chr3.3:70199926-70199945 None:intergenic 20.0%
!! TTGAATGCTTTCAAAATTTA+GGG - chr3.3:70198819-70198838 MS.gene75713:intron 20.0%
!!! AATTTAGGGTTATATTATTG+GGG - chr3.3:70198833-70198852 MS.gene75713:intron 20.0%
!!! TTTTGGTTTTATTCAATTTG+TGG - chr3.3:70199188-70199207 MS.gene75713:intron 20.0%
! AAATTGAAAAAGAAACGAAG+AGG + chr3.3:70199351-70199370 None:intergenic 25.0%
! AATAGATTGGTAGATTTCAT+TGG + chr3.3:70199715-70199734 None:intergenic 25.0%
! AATTGAAAAAGAAACGAAGA+GGG + chr3.3:70199350-70199369 None:intergenic 25.0%
! AATTTACTTGCAGTAATCAA+TGG + chr3.3:70200054-70200073 None:intergenic 25.0%
! ACATTTCAAACAACAAATTC+AGG + chr3.3:70200000-70200019 None:intergenic 25.0%
! ATAGATTGGTAGATTTCATT+GGG + chr3.3:70199714-70199733 None:intergenic 25.0%
! ATCTATTTGCATATAAACAG+AGG - chr3.3:70199728-70199747 MS.gene75713:intron 25.0%
! CTAAATTTCACTGGAAAAAA+AGG + chr3.3:70200031-70200050 None:intergenic 25.0%
! CTGTTTATATGCAAATAGAT+TGG + chr3.3:70199728-70199747 None:intergenic 25.0%
! GAATTTCAACAATAATTGTG+TGG - chr3.3:70199492-70199511 MS.gene75713:intron 25.0%
! GACTTTGAATGAATCAATAT+GGG - chr3.3:70199378-70199397 MS.gene75713:intron 25.0%
! GGATTGTTTATATGCAAATA+AGG + chr3.3:70199927-70199946 None:intergenic 25.0%
! TAATGTTTATGTTTCAGTAG+CGG - chr3.3:70200290-70200309 MS.gene75713:intron 25.0%
! TATAAATGTTTAGAAAGAGC+TGG - chr3.3:70200525-70200544 MS.gene75713:intron 25.0%
! TCATCTTAATTTCACACAAA+AGG - chr3.3:70198982-70199001 MS.gene75713:intron 25.0%
! TCTATTTGCATATAAACAGA+GGG - chr3.3:70199729-70199748 MS.gene75713:intron 25.0%
! TGACTTTGAATGAATCAATA+TGG - chr3.3:70199377-70199396 MS.gene75713:intron 25.0%
!! TGTCTTTTATTGCGTTATAA+TGG - chr3.3:70199571-70199590 MS.gene75713:intron 25.0%
!! TGTTGTTTGAAATGTAATGA+AGG - chr3.3:70200005-70200024 MS.gene75713:intron 25.0%
!!! CTTCGTTTCTTTTTCAATTT+TGG - chr3.3:70199351-70199370 MS.gene75713:intron 25.0%
!!! GGATTATAAGATTAGTTTAG+TGG - chr3.3:70199444-70199463 MS.gene75713:intron 25.0%
AACCCAGTGTAATAATCTTT+GGG + chr3.3:70198742-70198761 None:intergenic 30.0%
AATCAATGGCTAAATTTCAC+TGG + chr3.3:70200040-70200059 None:intergenic 30.0%
AATTGTGTGGTATACTAGTA+AGG - chr3.3:70199505-70199524 MS.gene75713:intron 30.0%
ATGAAATCTTCTTCAAGACT+TGG + chr3.3:70198966-70198985 None:intergenic 30.0%
CTATGTGTATTTACAGGAAA+CGG + chr3.3:70199420-70199439 None:intergenic 30.0%
CTATTTGCATATAAACAGAG+GGG - chr3.3:70199730-70199749 MS.gene75713:intron 30.0%
GATTATGTATGTGTTTGTTC+CGG - chr3.3:70200617-70200636 MS.gene75713:intron 30.0%
TAACCCAGTGTAATAATCTT+TGG + chr3.3:70198743-70198762 None:intergenic 30.0%
TACTGCAAGTAAATTACACT+AGG - chr3.3:70200059-70200078 MS.gene75713:intron 30.0%
TAGATTGGTAGATTTCATTG+GGG + chr3.3:70199713-70199732 None:intergenic 30.0%
TATAATAACATCGATGAGCT+CGG - chr3.3:70199974-70199993 MS.gene75713:intron 30.0%
TTATTGCGTTATAATGGTAC+AGG - chr3.3:70199577-70199596 MS.gene75713:intron 30.0%
! AATTGTTATTAAGTGACCAC+TGG + chr3.3:70200464-70200483 None:intergenic 30.0%
! CAATTTTACTCACTGCATAT+GGG - chr3.3:70199076-70199095 MS.gene75713:CDS 30.0%
!! GTTGGGTTTTCTGTTTTATT+CGG - chr3.3:70199143-70199162 MS.gene75713:intron 30.0%
!! TAAAATTGGTGCTAAGAAGT+TGG + chr3.3:70199064-70199083 None:intergenic 30.0%
!!! GTGTTAATGCTTTTTTCGTT+GGG - chr3.3:70199126-70199145 MS.gene75713:intron 30.0%
!!! TGTGTTAATGCTTTTTTCGT+TGG - chr3.3:70199125-70199144 MS.gene75713:intron 30.0%
AATTACACTAGGCCAGTTTA+TGG - chr3.3:70200070-70200089 MS.gene75713:intron 35.0%
ACCCAGTGTAATAATCTTTG+GGG + chr3.3:70198741-70198760 None:intergenic 35.0%
ACGAGACATTAAAATGTCCT+GGG - chr3.3:70200110-70200129 MS.gene75713:CDS 35.0%
AGATTGGTAGATTTCATTGG+GGG + chr3.3:70199712-70199731 None:intergenic 35.0%
ATTACACTAGGCCAGTTTAT+GGG - chr3.3:70200071-70200090 MS.gene75713:intron 35.0%
CCATATGCAGTGAGTAAAAT+TGG + chr3.3:70199078-70199097 None:intergenic 35.0%
CCTAGACTATGTGTATTTAC+AGG + chr3.3:70199426-70199445 None:intergenic 35.0%
CCTGTAAATACACATAGTCT+AGG - chr3.3:70199423-70199442 MS.gene75713:intron 35.0%
CTAAACGAAGGGAATATTCA+AGG - chr3.3:70200432-70200451 MS.gene75713:intron 35.0%
CTTGAATATTCCCTTCGTTT+AGG + chr3.3:70200434-70200453 None:intergenic 35.0%
CTTGTGTAAAAACAGGGAAA+AGG - chr3.3:70199826-70199845 MS.gene75713:intron 35.0%
GAAGGGAATATTCAAGGTAT+TGG - chr3.3:70200438-70200457 MS.gene75713:intron 35.0%
GATGCGAAATATCATATGGA+TGG - chr3.3:70199228-70199247 MS.gene75713:intron 35.0%
GGGAGATAAATATCCTTAAG+AGG + chr3.3:70198721-70198740 None:intergenic 35.0%
GTGATACAGATCTACAAAAC+AGG + chr3.3:70200708-70200727 None:intergenic 35.0%
TATAAACAGCCTGAAATCCA+AGG + chr3.3:70199614-70199633 None:intergenic 35.0%
TATTCAATTTGTGGATCCTG+CGG - chr3.3:70199197-70199216 MS.gene75713:intron 35.0%
TCATAGATTCAAACCGAGAT+CGG + chr3.3:70199952-70199971 None:intergenic 35.0%
TCCCCAAAGATTATTACACT+GGG - chr3.3:70198737-70198756 MS.gene75713:intron 35.0%
TGAATAAAACCAAAACCACG+AGG + chr3.3:70199183-70199202 None:intergenic 35.0%
TGCTGATGCGAAATATCATA+TGG - chr3.3:70199224-70199243 MS.gene75713:intron 35.0%
TTAAACTTTGGATGAAACCC+AGG + chr3.3:70200130-70200149 None:intergenic 35.0%
TTAATAAGTTCCGTGATCGA+TGG + chr3.3:70199650-70199669 None:intergenic 35.0%
! ATACTAGTAAGGCCCTATTT+TGG - chr3.3:70199516-70199535 MS.gene75713:intron 35.0%
! CCAATTTTACTCACTGCATA+TGG - chr3.3:70199075-70199094 MS.gene75713:CDS 35.0%
!! ACATACTGTTGGTTCTAGTT+TGG - chr3.3:70200554-70200573 MS.gene75713:intron 35.0%
!! CATACTGTTGGTTCTAGTTT+GGG - chr3.3:70200555-70200574 MS.gene75713:intron 35.0%
!! TGTTTTATTCGGCTTTCTAC+AGG - chr3.3:70199154-70199173 MS.gene75713:intron 35.0%
!!! GATAACTGTTGTTTTTGCTG+AGG - chr3.3:70199272-70199291 MS.gene75713:intron 35.0%
!!! TTTCCCTGTTTTTACACAAG+AGG + chr3.3:70199826-70199845 None:intergenic 35.0%
AAAGAAGCCAACTGAGATGA+GGG - chr3.3:70199302-70199321 MS.gene75713:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr3.3:70199819-70199838 MS.gene75713:intron 40.0%
ACTTAAACCACCATCGATCA+CGG - chr3.3:70199637-70199656 MS.gene75713:intron 40.0%
ATATGCAAATAAGGGCAACC+CGG + chr3.3:70199918-70199937 None:intergenic 40.0%
ATGGATGGTCAAGTTCTTCT+TGG - chr3.3:70199243-70199262 MS.gene75713:intron 40.0%
ATGGTCAAGTTCTTCTTGGT+AGG - chr3.3:70199247-70199266 MS.gene75713:intron 40.0%
CAAAATGACCGAAAGGTCTA+CGG + chr3.3:70198696-70198715 None:intergenic 40.0%
CAATGACAAGACCCATAAAC+TGG + chr3.3:70200085-70200104 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr3.3:70199820-70199839 MS.gene75713:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr3.3:70199852-70199871 MS.gene75713:intron 40.0%
CTCCCCAAAGATTATTACAC+TGG - chr3.3:70198736-70198755 MS.gene75713:intron 40.0%
GAATATTCCCTTCGTTTAGG+AGG + chr3.3:70200431-70200450 None:intergenic 40.0%
GACGAGACATTAAAATGTCC+TGG - chr3.3:70200109-70200128 MS.gene75713:CDS 40.0%
GATTGGTAGATTTCATTGGG+GGG + chr3.3:70199711-70199730 None:intergenic 40.0%
GCGTTATAATGGTACAGGTA+GGG - chr3.3:70199582-70199601 MS.gene75713:intron 40.0%
GTTGTTGTCATGTGACTGTA+AGG - chr3.3:70199775-70199794 MS.gene75713:intron 40.0%
TATAAACAGAGGGGTAACCT+TGG - chr3.3:70199739-70199758 MS.gene75713:intron 40.0%
TGCGTTATAATGGTACAGGT+AGG - chr3.3:70199581-70199600 MS.gene75713:intron 40.0%
TGGTCAAGTTCTTCTTGGTA+GGG - chr3.3:70199248-70199267 MS.gene75713:intron 40.0%
TTCTGCTTGTTTCAGCTAAG+AGG - chr3.3:70200240-70200259 MS.gene75713:CDS 40.0%
TTGTAGATCTGTATCACCTG+AGG - chr3.3:70200711-70200730 MS.gene75713:CDS 40.0%
TTGTTCCGGTCAAAAGATGT+TGG - chr3.3:70200631-70200650 MS.gene75713:intron 40.0%
! TATGGGTCTCGTTTCGATTT+TGG - chr3.3:70199093-70199112 MS.gene75713:CDS 40.0%
!! ATATTCAAGGTATTGGCCAG+TGG - chr3.3:70200445-70200464 MS.gene75713:intron 40.0%
AAAGGTCTACGGAGATCTTC+AGG + chr3.3:70198685-70198704 None:intergenic 45.0%
AAGGTTACGAACAAGGAGAC+TGG + chr3.3:70198647-70198666 None:intergenic 45.0%
AGAGGACCAAAATGACCGAA+AGG + chr3.3:70198703-70198722 None:intergenic 45.0%
ATAAACAATCCCGCCGATCT+CGG - chr3.3:70199936-70199955 MS.gene75713:intron 45.0%
ATAAGTTCCGTGATCGATGG+TGG + chr3.3:70199647-70199666 None:intergenic 45.0%
ATTCCCTTCGTTTAGGAGGA+GGG + chr3.3:70200427-70200446 None:intergenic 45.0%
CTCTTCCGAGGACCAAAATA+GGG + chr3.3:70199531-70199550 None:intergenic 45.0%
CTGTATCACCTGAGGATAGA+AGG - chr3.3:70200719-70200738 MS.gene75713:CDS 45.0%
CTTGTTTCAGCTAAGAGGTG+AGG - chr3.3:70200245-70200264 MS.gene75713:CDS 45.0%
CTTTCACTGGACTCTGACTA+CGG + chr3.3:70200822-70200841 None:intergenic 45.0%
GAAAGAAGCCAACTGAGATG+AGG - chr3.3:70199301-70199320 MS.gene75713:intron 45.0%
GAAGATCTCCGTAGACCTTT+CGG - chr3.3:70198685-70198704 MS.gene75713:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - chr3.3:70199851-70199870 MS.gene75713:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr3.3:70199848-70199867 MS.gene75713:intron 45.0%
GGGTTCAAACCTTGGATTTC+AGG - chr3.3:70199602-70199621 MS.gene75713:intron 45.0%
GTCATGTGACTGTAAGGTCA+CGG - chr3.3:70199781-70199800 MS.gene75713:intron 45.0%
TACAGGTAGGGTTCAAACCT+TGG - chr3.3:70199594-70199613 MS.gene75713:intron 45.0%
TAGATTCAAACCGAGATCGG+CGG + chr3.3:70199949-70199968 None:intergenic 45.0%
TATTCCCTTCGTTTAGGAGG+AGG + chr3.3:70200428-70200447 None:intergenic 45.0%
TCATGTGACTGTAAGGTCAC+GGG - chr3.3:70199782-70199801 MS.gene75713:intron 45.0%
TCTCTTCCGAGGACCAAAAT+AGG + chr3.3:70199532-70199551 None:intergenic 45.0%
TGGTAGGTAGATCGCTTTGA+CGG + chr3.3:70198627-70198646 None:intergenic 45.0%
TTACGAACAAGGAGACTGGT+AGG + chr3.3:70198643-70198662 None:intergenic 45.0%
TTCCGGTCAAAAGATGTTGG+TGG - chr3.3:70200634-70200653 MS.gene75713:intron 45.0%
! CGTAGACCTTTCGGTCATTT+TGG - chr3.3:70198694-70198713 MS.gene75713:CDS 45.0%
! CTCCACCAACATCTTTTGAC+CGG + chr3.3:70200639-70200658 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr3.3:70199815-70199834 None:intergenic 45.0%
! TTTTGGTCCTCGGAAGAGAT+GGG - chr3.3:70199533-70199552 MS.gene75713:intron 45.0%
!! ATTTTGGTCCTCGGAAGAGA+TGG - chr3.3:70199532-70199551 MS.gene75713:intron 45.0%
!! CGGTCATTTTGGTCCTCTTA+AGG - chr3.3:70198705-70198724 MS.gene75713:CDS 45.0%
!!! TAAGGCCCTATTTTGGTCCT+CGG - chr3.3:70199523-70199542 MS.gene75713:intron 45.0%
AGATGAGGGTCAGAGAGAGA+AGG - chr3.3:70199316-70199335 MS.gene75713:intron 50.0%
AGATTCAAACCGAGATCGGC+GGG + chr3.3:70199948-70199967 None:intergenic 50.0%
AGTCAATCCCATCTCTTCCG+AGG + chr3.3:70199543-70199562 None:intergenic 50.0%
ATTCCCCTCCTCCTAAACGA+AGG - chr3.3:70200420-70200439 MS.gene75713:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr3.3:70199759-70199778 None:intergenic 50.0%
CATGGCGAAGGTTACGAACA+AGG + chr3.3:70198654-70198673 None:intergenic 50.0%
CGTAGTCAGAGTCCAGTGAA+AGG - chr3.3:70200820-70200839 MS.gene75713:CDS 50.0%
CTTCTCACATCCCCGTTCTT+GGG + chr3.3:70200799-70200818 None:intergenic 50.0%
GATCACAACACAGCAGAGAG+AGG - chr3.3:70200755-70200774 MS.gene75713:CDS 50.0%
GATCTTCAGGCCTACAGTCA+TGG + chr3.3:70198672-70198691 None:intergenic 50.0%
GGGGTGAACGAGAATAACGT+GGG + chr3.3:70200343-70200362 None:intergenic 50.0%
GGGTGAACGAGAATAACGTG+GGG + chr3.3:70200342-70200361 None:intergenic 50.0%
GGTAGGTAGATCGCTTTGAC+GGG + chr3.3:70198626-70198645 None:intergenic 50.0%
GGTGAACGAGAATAACGTGG+GGG + chr3.3:70200341-70200360 None:intergenic 50.0%
GTAACCTTCGCCATGACTGT+AGG - chr3.3:70198659-70198678 MS.gene75713:CDS 50.0%
GTAGGTAGATCGCTTTGACG+GGG + chr3.3:70198625-70198644 None:intergenic 50.0%
GTCGTCATTCTGATCGAAGG+AGG - chr3.3:70200312-70200331 MS.gene75713:intron 50.0%
TCTCTGACCCTCATCTCAGT+TGG + chr3.3:70199312-70199331 None:intergenic 50.0%
TTCCCCTCCTCCTAAACGAA+GGG - chr3.3:70200421-70200440 MS.gene75713:intron 50.0%
TTCCCTTCGTTTAGGAGGAG+GGG + chr3.3:70200426-70200445 None:intergenic 50.0%
! GATAGAAGGCACAGTCGAGA+AGG - chr3.3:70200733-70200752 MS.gene75713:CDS 50.0%
! TACAGGCAACCTCGTGGTTT+TGG - chr3.3:70199171-70199190 MS.gene75713:intron 50.0%
!! GCTGGACTAGCACATACTGT+TGG - chr3.3:70200543-70200562 MS.gene75713:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr3.3:70199794-70199813 MS.gene75713:intron 55.0%
AAGTCCGAGCCGTGATGTCA+GGG - chr3.3:70200864-70200883 MS.gene75713:CDS 55.0%
ACTGACTGGGAGACCTACTG+CGG + chr3.3:70200897-70200916 None:intergenic 55.0%
ATCTGTGACGAGGTGGAGAC+CGG + chr3.3:70200373-70200392 None:intergenic 55.0%
CGACTGTGCCTTCTATCCTC+AGG + chr3.3:70200730-70200749 None:intergenic 55.0%
CGGGGTGAACGAGAATAACG+TGG + chr3.3:70200344-70200363 None:intergenic 55.0%
CTCTCGACTGAGCCTTTCAC+TGG + chr3.3:70200835-70200854 None:intergenic 55.0%
GAAGAAGTCCAAGTCCTCGC+CGG - chr3.3:70198590-70198609 MS.gene75713:CDS 55.0%
GCGGTCGTCATTCTGATCGA+AGG - chr3.3:70200309-70200328 MS.gene75713:intron 55.0%
GCTTCTCACATCCCCGTTCT+TGG + chr3.3:70200800-70200819 None:intergenic 55.0%
GCTTTCTACAGGCAACCTCG+TGG - chr3.3:70199165-70199184 MS.gene75713:intron 55.0%
GGGATGCTTCCCTGACATCA+CGG + chr3.3:70200876-70200895 None:intergenic 55.0%
TCACGCTCTCCACCCAAGAA+CGG - chr3.3:70200784-70200803 MS.gene75713:CDS 55.0%
ACGCTCTCCACCCAAGAACG+GGG - chr3.3:70200786-70200805 MS.gene75713:CDS 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr3.3:70199892-70199911 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr3.3:70199748-70199767 MS.gene75713:intron 60.0%
AGGTGGAGACCGGGAATAGC+GGG + chr3.3:70200363-70200382 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr3.3:70199896-70199915 MS.gene75713:intron 60.0%
CAAGTCCGAGCCGTGATGTC+AGG - chr3.3:70200863-70200882 MS.gene75713:CDS 60.0%
CACGCTCTCCACCCAAGAAC+GGG - chr3.3:70200785-70200804 MS.gene75713:CDS 60.0%
CAGGCCTACAGTCATGGCGA+AGG + chr3.3:70198666-70198685 None:intergenic 60.0%
CCACCGCGTTACAGCAGAAG+AGG - chr3.3:70198556-70198575 MS.gene75713:CDS 60.0%
CCGCCTCTTCTGCTGTAACG+CGG + chr3.3:70198562-70198581 None:intergenic 60.0%
CCGCGTTACAGCAGAAGAGG+CGG - chr3.3:70198559-70198578 MS.gene75713:CDS 60.0%
CCTCTTCTGCTGTAACGCGG+TGG + chr3.3:70198559-70198578 None:intergenic 60.0%
CGAGAGCGAGATCTGTGACG+AGG + chr3.3:70200383-70200402 None:intergenic 60.0%
CGTCACAGATCTCGCTCTCG+CGG - chr3.3:70200383-70200402 MS.gene75713:intron 60.0%
CGTTACAGCAGAAGAGGCGG+CGG - chr3.3:70198562-70198581 MS.gene75713:CDS 60.0%
CTCACATCCCCGTTCTTGGG+TGG + chr3.3:70200796-70200815 None:intergenic 60.0%
CTCGTTCACCCCGCTATTCC+CGG - chr3.3:70200351-70200370 MS.gene75713:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr3.3:70199891-70199910 None:intergenic 60.0%
CTGACTGGGAGACCTACTGC+GGG + chr3.3:70200896-70200915 None:intergenic 60.0%
CTTCTGCTGTAACGCGGTGG+TGG + chr3.3:70198556-70198575 None:intergenic 60.0%
GAGCGAGATCTGTGACGAGG+TGG + chr3.3:70200380-70200399 None:intergenic 60.0%
GAGGTGGAGACCGGGAATAG+CGG + chr3.3:70200364-70200383 None:intergenic 60.0%
GCTTCCCTGACATCACGGCT+CGG + chr3.3:70200871-70200890 None:intergenic 60.0%
TCTGTGACGAGGTGGAGACC+GGG + chr3.3:70200372-70200391 None:intergenic 60.0%
TTCGCATCAGCAGCATCCGC+AGG + chr3.3:70199216-70199235 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr3.3:70199864-70199883 MS.gene75713:intron 60.0%
! CTGACATCACGGCTCGGACT+TGG + chr3.3:70200865-70200884 None:intergenic 60.0%
! TTTGACGGGGAGCGTAACGC+CGG + chr3.3:70198612-70198631 None:intergenic 60.0%
!! CTGTAACGCGGTGGTGGAGA+TGG + chr3.3:70198550-70198569 None:intergenic 60.0%
!! TCAGGGAAGCATCCCGCAGT+AGG - chr3.3:70200881-70200900 MS.gene75713:CDS 60.0%
CATACGCAGGGTCCGGGAAG+GGG + chr3.3:70199879-70199898 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr3.3:70199866-70199885 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr3.3:70199879-70199898 MS.gene75713:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr3.3:70199880-70199899 None:intergenic 65.0%
GGTGGAGACCGGGAATAGCG+GGG + chr3.3:70200362-70200381 None:intergenic 65.0%
TACAGCAGAAGAGGCGGCGG+AGG - chr3.3:70198565-70198584 MS.gene75713:CDS 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr3.3:70199897-70199916 MS.gene75713:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr3.3:70199880-70199899 MS.gene75713:intron 65.0%
AGCAGAAGAGGCGGCGGAGG+AGG - chr3.3:70198568-70198587 MS.gene75713:CDS 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr3.3:70199881-70199900 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr3.3:70199885-70199904 None:intergenic 70.0%
GCGTAACGCCGGCGAGGACT+TGG + chr3.3:70198601-70198620 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr3.3:70199886-70199905 None:intergenic 70.0%
!! CGGGGAGCGTAACGCCGGCG+AGG + chr3.3:70198607-70198626 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 70198526 70200918 70198526 ID=MS.gene75713
chr3.3 mRNA 70198526 70200918 70198526 ID=MS.gene75713.t1;Parent=MS.gene75713
chr3.3 exon 70200686 70200918 70200686 ID=MS.gene75713.t1.exon1;Parent=MS.gene75713.t1
chr3.3 CDS 70200686 70200918 70200686 ID=cds.MS.gene75713.t1;Parent=MS.gene75713.t1
chr3.3 exon 70200107 70200268 70200107 ID=MS.gene75713.t1.exon2;Parent=MS.gene75713.t1
chr3.3 CDS 70200107 70200268 70200107 ID=cds.MS.gene75713.t1;Parent=MS.gene75713.t1
chr3.3 exon 70198991 70199137 70198991 ID=MS.gene75713.t1.exon3;Parent=MS.gene75713.t1
chr3.3 CDS 70198991 70199137 70198991 ID=cds.MS.gene75713.t1;Parent=MS.gene75713.t1
chr3.3 exon 70198526 70198727 70198526 ID=MS.gene75713.t1.exon4;Parent=MS.gene75713.t1
chr3.3 CDS 70198526 70198727 70198526 ID=cds.MS.gene75713.t1;Parent=MS.gene75713.t1
Gene Sequence

>MS.gene75713

ATGAGAGGAAGAAGCTACAGTCCATCTCCACCACCGCGTTACAGCAGAAGAGGCGGCGGAGGAGGAAGAAGTCCAAGTCCTCGCCGGCGTTACGCTCCCCGTCAAAGCGATCTACCTACCAGTCTCCTTGTTCGTAACCTTCGCCATGACTGTAGGCCTGAAGATCTCCGTAGACCTTTCGGTCATTTTGGTCCTCTTAAGGATATTTATCTCCCCAAAGATTATTACACTGGGTTAGTACTAATCAATCTTCAATTTCACTCAATTATGTTTTCGTCTGCTCTGAATTTTCATTGAATGCTTTCAAAATTTAGGGTTATATTATTGGGGCTTTTTTTTTAATAATTGTGAGAAATTAGGTTTATCAGTGATTTAGAGTTTTGAAGACATGTATGAAGTAAGTAGAAGATGTTATTGATAATGAAGATGAAGATCTTCCAAGTCTTGAAGAAGATTTCATCTTAATTTCACACAAAAGGTCAGCAGCATAGTGCTTGCTTGCTTGATTTGATCTTATATTATTGGGACTGTTTCACCAACTTCTTAGCACCAATTTTACTCACTGCATATGGGTCTCGTTTCGATTTTGGTCTATTTCATGTGTTAATGCTTTTTTCGTTGGGTTTTCTGTTTTATTCGGCTTTCTACAGGCAACCTCGTGGTTTTGGTTTTATTCAATTTGTGGATCCTGCGGATGCTGCTGATGCGAAATATCATATGGATGGTCAAGTTCTTCTTGGTAGGGAGATAACTGTTGTTTTTGCTGAGGAAAATAGAAAGAAGCCAACTGAGATGAGGGTCAGAGAGAGAAGGTAAGATTTCCCTCTTCGTTTCTTTTTCAATTTTGGATTTGACTTTGAATGAATCAATATGGGATACTTGCATTTCGAACCGTTTCCTGTAAATACACATAGTCTAGGATTATAAGATTAGTTTAGTGGTTATTTATGCTATTGTTTCCACTTTGAATTTCAACAATAATTGTGTGGTATACTAGTAAGGCCCTATTTTGGTCCTCGGAAGAGATGGGATTGACTTTTGTAGCTGTCTTTTATTGCGTTATAATGGTACAGGTAGGGTTCAAACCTTGGATTTCAGGCTGTTTATAATCACTTAAACCACCATCGATCACGGAACTTATTAAATATTTGATAGATAAAATACATAGTCTAAAATAATTTACCCCCCAATGAAATCTACCAATCTATTTGCATATAAACAGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGTAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGAAAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCGTATGCGGGAGCTTCAGTGCACCGGGTTGCCCTTATTTGCATATAAACAATCCCGCCGATCTCGGTTTGAATCTATGATTTATAATAACATCGATGAGCTCGGCCTGAATTTGTTGTTTGAAATGTAATGAAGGCCTTTTTTTCCAGTGAAATTTAGCCATTGATTACTGCAAGTAAATTACACTAGGCCAGTTTATGGGTCTTGTCATTGTTTTGACGAGACATTAAAATGTCCTGGGTTTCATCCAAAGTTTAAATGATTGTTGTTTTCCTTATTTATTATCATCATTTACCAATACTTATAAGTATACTGTTTTAAGCTTCTTCATTGCAATGTTGCATAAATTTCTGCTTGTTTCAGCTAAGAGGTGAGGTGAAATTCTGATTATCTATTTTTAATGTTTATGTTTCAGTAGCGGTCGTCATTCTGATCGAAGGAGGTCTCCCCCACGTTATTCTCGTTCACCCCGCTATTCCCGGTCTCCACCTCGTCACAGATCTCGCTCTCGCGGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGGTATTGGCCAGTGGTCACTTAATAACAATTCATTTTATTGCATATATTTGTATTTACTTAAAATAATGGTATATAAATGTTTAGAAAGAGCTGGACTAGCACATACTGTTGGTTCTAGTTTGGGTCGAAACAATCTGATGTGCAGTGTGATTAGTTGAACTTTGATTATGTATGTGTTTGTTCCGGTCAAAAGATGTTGGTGGAGTCTTTGCTAATTTATTTTTTTTAATTATAAGGCTTTTCATACATTGCCTGTTTTGTAGATCTGTATCACCTGAGGATAGAAGGCACAGTCGAGAAGGATCACAACACAGCAGAGAGAGGTCATACTCACGCTCTCCACCCAAGAACGGGGATGTGAGAAGCCGTAGTCAGAGTCCAGTGAAAGGCTCAGTCGAGAGCAGAAGTCCAAGTCCGAGCCGTGATGTCAGGGAAGCATCCCGCAGTAGGTCTCCCAGTCAGTGA

Protein sequence

>MS.gene75713.t1

MRGRSYSPSPPPRYSRRGGGGGRSPSPRRRYAPRQSDLPTSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGREITVVFAEENRKKPTEMRVRERSSGRHSDRRRSPPRYSRSPRYSRSPPRHRSRSRGSRDYYSPPPKRREYSRSVSPEDRRHSREGSQHSRERSYSRSPPKNGDVRSRSQSPVKGSVESRSPSPSRDVREASRSRSPSQ