Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82776.t1 | KEH24734.1 | 97.5 | 275 | 7 | 0 | 1 | 275 | 34 | 308 | 4.70E-113 | 417.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82776.t1 | P43333 | 72.3 | 235 | 64 | 1 | 1 | 235 | 1 | 234 | 7.4e-75 | 282.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82776.t1 | A0A072UG25 | 97.5 | 275 | 7 | 0 | 1 | 275 | 1 | 275 | 3.4e-113 | 417.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene82776 | 0.809775 | 1.60E-50 | -1.69E-46 |
MS.gene055513 | MS.gene82776 | 0.834962 | 2.21E-56 | -1.69E-46 |
MS.gene057102 | MS.gene82776 | 0.808817 | 2.57E-50 | -1.69E-46 |
MS.gene059570 | MS.gene82776 | 0.803588 | 3.25E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82776.t1 | MTR_6g004180 | 98.545 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 0.0 | 538 |
MS.gene82776.t1 | MTR_6g004180 | 98.545 | 275 | 4 | 0 | 1 | 275 | 34 | 308 | 0.0 | 538 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82776.t1 | AT1G09760 | 78.298 | 235 | 50 | 1 | 1 | 235 | 1 | 234 | 7.07e-130 | 369 |
Find 50 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGCAAATTATTGCTATTA+AGG | 0.211984 | 6.1:-173656 | MS.gene82776:intron |
ATCCAACTCGCGCTCTTTAA+TGG | 0.228091 | 6.1:+175031 | None:intergenic |
CGACAATGAGATTGTCAAAT+TGG | 0.231901 | 6.1:-174723 | MS.gene82776:CDS |
CAAATCATACCTCCAATATT+AGG | 0.247606 | 6.1:+174632 | None:intergenic |
GCTGAAATCCCTCCGAGTTT+TGG | 0.276825 | 6.1:-174360 | MS.gene82776:CDS |
ACTAGAATTAATCCTAATAT+TGG | 0.297232 | 6.1:-174644 | MS.gene82776:CDS |
ATATCTGTAATCGAAAATTT+AGG | 0.313621 | 6.1:-174993 | MS.gene82776:CDS |
TGTGTATCTTTAGATTCATC+AGG | 0.370931 | 6.1:+171525 | None:intergenic |
CACTACTCATTAACAACAAC+AGG | 0.386369 | 6.1:-174670 | MS.gene82776:CDS |
GACTCACTGCTGACCTGATC+TGG | 0.386465 | 6.1:-175076 | MS.gene82776:CDS |
GTACCCAATCGGTTAAGATT+TGG | 0.397742 | 6.1:+174692 | None:intergenic |
AGACTAAGGAACTGCAGCTT+TGG | 0.400575 | 6.1:+174437 | None:intergenic |
CAATTTGACAATCTCATTGT+CGG | 0.414263 | 6.1:+174724 | None:intergenic |
ATAAATCTACTGTGTCAAAT+TGG | 0.424527 | 6.1:+174747 | None:intergenic |
GAAACATCTGGAGTTTCAAC+AGG | 0.431038 | 6.1:+173727 | None:intergenic |
TTAATAGCAATAATTTGCTC+TGG | 0.437146 | 6.1:+173658 | None:intergenic |
TCCGTAGCTTCTGAAACATC+TGG | 0.448794 | 6.1:+173715 | None:intergenic |
TTACCAAATCTTAACCGATT+GGG | 0.454175 | 6.1:-174695 | MS.gene82776:CDS |
TGATTCTACTGCAATGGAAC+AGG | 0.456679 | 6.1:-171487 | MS.gene82776:intron |
TGTTAACAGGCACTGAAGTC+TGG | 0.458610 | 6.1:-171624 | MS.gene82776:intron |
AGAACTAGTGTGTGTAAATT+CGG | 0.472213 | 6.1:+174512 | None:intergenic |
CTTACCAAATCTTAACCGAT+TGG | 0.476759 | 6.1:-174696 | MS.gene82776:CDS |
CACTAGTTCTCACAAACAAC+AGG | 0.490673 | 6.1:-174499 | MS.gene82776:CDS |
GGAGTAGGAGGAATCACTTT+GGG | 0.492669 | 6.1:+173679 | None:intergenic |
AGATGTCGCTAGACTTGAAA+AGG | 0.495048 | 6.1:-172233 | MS.gene82776:intron |
TTAATGGTATTGAAGAAATG+AGG | 0.495834 | 6.1:+175047 | None:intergenic |
CTTTCTTGAAGTCCAAAACT+CGG | 0.500459 | 6.1:+174348 | None:intergenic |
GCAATAATTTGCTCTGGAGT+AGG | 0.520654 | 6.1:+173664 | None:intergenic |
AGAATTAATCCTAATATTGG+AGG | 0.520985 | 6.1:-174641 | MS.gene82776:intron |
TAAGGAACTGCAGCTTTGGA+AGG | 0.529538 | 6.1:+174441 | None:intergenic |
TCCAGATGTTTCAGAAGCTA+CGG | 0.537922 | 6.1:-173716 | MS.gene82776:CDS |
CTTGAAGTCCAAAACTCGGA+GGG | 0.545316 | 6.1:+174352 | None:intergenic |
TAATGAGTAGTGTACCCAAT+CGG | 0.554266 | 6.1:+174681 | None:intergenic |
TGGAGTAGGAGGAATCACTT+TGG | 0.558536 | 6.1:+173678 | None:intergenic |
ATAATTTGCTCTGGAGTAGG+AGG | 0.562316 | 6.1:+173667 | None:intergenic |
CTTCAAGAAAGTGAAAGATA+AGG | 0.562596 | 6.1:-174336 | MS.gene82776:intron |
TAATACTGATTCTACTGCAA+TGG | 0.563664 | 6.1:-171493 | MS.gene82776:CDS |
TATTGTTGTCAAGAAGACTA+AGG | 0.567496 | 6.1:+174423 | None:intergenic |
TACCATTAAAGAGCGCGAGT+TGG | 0.572232 | 6.1:-175033 | MS.gene82776:CDS |
CTCGGAGGGATTTCAGCTTG+TGG | 0.583753 | 6.1:+174366 | None:intergenic |
TCTGGAGTTTCAACAGGCGC+TGG | 0.587258 | 6.1:+173733 | None:intergenic |
CTAGTGTGTGTAAATTCGGT+AGG | 0.599258 | 6.1:+174516 | None:intergenic |
AAGAGTCTGTGAACTAACAA+TGG | 0.608620 | 6.1:+172258 | None:intergenic |
AAGGAACTGCAGCTTTGGAA+GGG | 0.618926 | 6.1:+174442 | None:intergenic |
AGCTTTGGAAGGGATGTCAA+AGG | 0.641417 | 6.1:+174452 | None:intergenic |
CGAAAATTTAGGTGCCACAG+AGG | 0.647646 | 6.1:-174982 | MS.gene82776:intron |
TCTTGAAGTCCAAAACTCGG+AGG | 0.658139 | 6.1:+174351 | None:intergenic |
AGATGTTTCAGAAGCTACGG+AGG | 0.681835 | 6.1:-173713 | MS.gene82776:CDS |
GATAATATTACATACCTCTG+TGG | 0.697109 | 6.1:+174968 | None:intergenic |
GAGCGCGAGTTGGATCTGAG+AGG | 0.748692 | 6.1:-175023 | MS.gene82776:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAAATAGTTACA+AGG | + | chr6.1:171198-171217 | None:intergenic | 10.0% |
!! | AAAGAATAGTAATAAAATAA+TGG | + | chr6.1:174847-174866 | None:intergenic | 10.0% |
!! | AGAATTAAAAATAGAATAAT+AGG | + | chr6.1:172986-173005 | None:intergenic | 10.0% |
!!! | GTAACTATTTTTTTTTTTTA+AGG | - | chr6.1:171199-171218 | MS.gene82776:intron | 10.0% |
!!! | TTTTCTTAAAATTATATTTG+TGG | - | chr6.1:172182-172201 | MS.gene82776:intron | 10.0% |
!! | AAACAAAAATGCATAAAAAA+AGG | + | chr6.1:172563-172582 | None:intergenic | 15.0% |
!! | AATAGTAATAAAATAATGGT+TGG | + | chr6.1:174843-174862 | None:intergenic | 15.0% |
!! | ATAGTAATAAAATAATGGTT+GGG | + | chr6.1:174842-174861 | None:intergenic | 15.0% |
!! | ATATATAAGAAATCTATACT+AGG | + | chr6.1:174446-174465 | None:intergenic | 15.0% |
!! | CAATAAAGAATTAATCAAAT+GGG | + | chr6.1:173378-173397 | None:intergenic | 15.0% |
!! | TAAATTCATTATCAGTTTAA+TGG | + | chr6.1:173129-173148 | None:intergenic | 15.0% |
!! | TTACAAAAAAAGTGAATTAT+AGG | - | chr6.1:171730-171749 | MS.gene82776:intron | 15.0% |
!! | TTACAATGCAAAAAAAAAAA+CGG | - | chr6.1:172241-172260 | MS.gene82776:CDS | 15.0% |
!!! | TTAAGTATTGTTTTTGTTTT+AGG | - | chr6.1:173962-173981 | MS.gene82776:intron | 15.0% |
!!! | TTTGATATTTTCTTTAACTA+AGG | - | chr6.1:173714-173733 | MS.gene82776:CDS | 15.0% |
!! | AACCAAAGAAAAGATAAATA+TGG | + | chr6.1:171841-171860 | None:intergenic | 20.0% |
!! | ACAAGTATAATTACATATCA+TGG | + | chr6.1:174739-174758 | None:intergenic | 20.0% |
!! | ACATAGTTATATACTATGTA+TGG | + | chr6.1:173658-173677 | None:intergenic | 20.0% |
!! | ACCAAAGAAAAGATAAATAT+GGG | + | chr6.1:171840-171859 | None:intergenic | 20.0% |
!! | ACTAGAATTAATCCTAATAT+TGG | - | chr6.1:171486-171505 | MS.gene82776:intron | 20.0% |
!! | AGTTAAAGAAAATATCAAAC+AGG | + | chr6.1:173713-173732 | None:intergenic | 20.0% |
!! | ATAGCATAATTTCAACTTAT+AGG | + | chr6.1:173328-173347 | None:intergenic | 20.0% |
!! | ATATCTGTAATCGAAAATTT+AGG | - | chr6.1:171137-171156 | MS.gene82776:intron | 20.0% |
!! | ATTAGATAATCATTCATTTC+TGG | - | chr6.1:173935-173954 | MS.gene82776:intron | 20.0% |
!! | CCAATAAAGAATTAATCAAA+TGG | + | chr6.1:173379-173398 | None:intergenic | 20.0% |
!! | CCATTTGATTAATTCTTTAT+TGG | - | chr6.1:173376-173395 | MS.gene82776:intron | 20.0% |
!! | GCTTAATTAACTGTAATTAT+AGG | + | chr6.1:174873-174892 | None:intergenic | 20.0% |
!! | TTATAATTATCTGCATTTGA+GGG | - | chr6.1:173252-173271 | MS.gene82776:intron | 20.0% |
!! | TTGATTAATTCTTTATTGGT+TGG | - | chr6.1:173380-173399 | MS.gene82776:intron | 20.0% |
!! | TTGTAAAATGAATTTAACTG+TGG | - | chr6.1:173023-173042 | MS.gene82776:intron | 20.0% |
!! | TTTATAATTATCTGCATTTG+AGG | - | chr6.1:173251-173270 | MS.gene82776:intron | 20.0% |
!!! | TCAGTTAAATAATTTTGACA+GGG | - | chr6.1:171287-171306 | MS.gene82776:intron | 20.0% |
!!! | TTCAGTTAAATAATTTTGAC+AGG | - | chr6.1:171286-171305 | MS.gene82776:intron | 20.0% |
! | AAAAAAAAAAACGGAAATGG+TGG | - | chr6.1:172250-172269 | MS.gene82776:CDS | 25.0% |
! | AATAGAATAATAGGTACTTC+AGG | + | chr6.1:172977-172996 | None:intergenic | 25.0% |
! | AATTCATGAACATATCAAGT+AGG | + | chr6.1:171332-171351 | None:intergenic | 25.0% |
! | AGAATTAATCCTAATATTGG+AGG | - | chr6.1:171489-171508 | MS.gene82776:CDS | 25.0% |
! | AGTATAATTACATATCATGG+AGG | + | chr6.1:174736-174755 | None:intergenic | 25.0% |
! | AGTTGAAATTATGCTATAAG+TGG | - | chr6.1:173331-173350 | MS.gene82776:intron | 25.0% |
! | ATAAATCTACTGTGTCAAAT+TGG | + | chr6.1:171386-171405 | None:intergenic | 25.0% |
! | CAATTGTGTATGAATTGTTT+AGG | - | chr6.1:174990-175009 | MS.gene82776:CDS | 25.0% |
! | GATACATTATTACTAACATG+AGG | + | chr6.1:175053-175072 | None:intergenic | 25.0% |
! | GTTGAAATTATGCTATAAGT+GGG | - | chr6.1:173332-173351 | MS.gene82776:intron | 25.0% |
! | TATACTTGTTCAGAACTAAT+TGG | - | chr6.1:174750-174769 | MS.gene82776:CDS | 25.0% |
! | TATGTATGGCTTACTATAAT+AGG | + | chr6.1:173644-173663 | None:intergenic | 25.0% |
! | TATTCTGGATTATAGCAAAA+TGG | - | chr6.1:173745-173764 | MS.gene82776:CDS | 25.0% |
! | TGCAAAAAAAAAAACGGAAA+TGG | - | chr6.1:172247-172266 | MS.gene82776:CDS | 25.0% |
! | TGCAACAAAAAGTAAACTTA+GGG | + | chr6.1:174065-174084 | None:intergenic | 25.0% |
! | TGCAACATAAAGTAAACTTA+GGG | - | chr6.1:174195-174214 | MS.gene82776:intron | 25.0% |
! | TTCATTCTAAATTGAACACA+AGG | + | chr6.1:172521-172540 | None:intergenic | 25.0% |
! | TTGCAACAAAAAGTAAACTT+AGG | + | chr6.1:174066-174085 | None:intergenic | 25.0% |
! | TTGCAACATAAAGTAAACTT+AGG | - | chr6.1:174194-174213 | MS.gene82776:intron | 25.0% |
!! | AACTGATAATGAATTTAGTC+AGG | - | chr6.1:173132-173151 | MS.gene82776:intron | 25.0% |
!! | ACCCATATTTATCTTTTCTT+TGG | - | chr6.1:171836-171855 | MS.gene82776:intron | 25.0% |
!! | AGAGCAAATTATTGCTATTA+AGG | - | chr6.1:172474-172493 | MS.gene82776:intron | 25.0% |
!! | GAAAAACTTGTTTGAATCAA+AGG | - | chr6.1:172348-172367 | MS.gene82776:intron | 25.0% |
!! | GTTTTCCAAAATTGTGATTT+TGG | + | chr6.1:174251-174270 | None:intergenic | 25.0% |
!! | TGACATATCATCAGTTATTT+TGG | + | chr6.1:174471-174490 | None:intergenic | 25.0% |
!! | TTAATGGTATTGAAGAAATG+AGG | + | chr6.1:171086-171105 | None:intergenic | 25.0% |
!! | TTTAGGCTTAATTACACTTT+TGG | - | chr6.1:173979-173998 | MS.gene82776:intron | 25.0% |
!! | TTTCATTACATTCTTTTTGC+AGG | - | chr6.1:175078-175097 | MS.gene82776:CDS | 25.0% |
!!! | AAAGAGTTGTTTTTTTTAGG+GGG | - | chr6.1:174225-174244 | MS.gene82776:intron | 25.0% |
!!! | GAAAGAGTTGTTTTTTTAGA+GGG | + | chr6.1:174036-174055 | None:intergenic | 25.0% |
!!! | GAAAGAGTTGTTTTTTTTAG+GGG | - | chr6.1:174224-174243 | MS.gene82776:intron | 25.0% |
!!! | GGAAAGAGTTGTTTTTTTTA+GGG | - | chr6.1:174223-174242 | MS.gene82776:intron | 25.0% |
!!! | TACTTTTTGACTCGAAATTA+GGG | + | chr6.1:174138-174157 | None:intergenic | 25.0% |
!!! | TGGAAAGAGTTGTTTTTTTT+AGG | - | chr6.1:174222-174241 | MS.gene82776:intron | 25.0% |
!!! | TTAATAGCAATAATTTGCTC+TGG | + | chr6.1:172475-172494 | None:intergenic | 25.0% |
!!! | TTACTTTTTGACTCGAAATT+AGG | + | chr6.1:174139-174158 | None:intergenic | 25.0% |
!!! | TTTTGCTATAATCCAGAATA+AGG | + | chr6.1:173745-173764 | None:intergenic | 25.0% |
AACTATAAAACACATCGCAA+GGG | - | chr6.1:173159-173178 | MS.gene82776:intron | 30.0% | |
ACTATATCTTGTGATAGTAC+AGG | - | chr6.1:172887-172906 | MS.gene82776:intron | 30.0% | |
AGAAAGTGAAAGATAAGGTA+AGG | - | chr6.1:171799-171818 | MS.gene82776:intron | 30.0% | |
AGAACTAGTGTGTGTAAATT+CGG | + | chr6.1:171621-171640 | None:intergenic | 30.0% | |
ATCAAAGCTGAGTAAAACAA+GGG | + | chr6.1:172011-172030 | None:intergenic | 30.0% | |
CAAATCATACCTCCAATATT+AGG | + | chr6.1:171501-171520 | None:intergenic | 30.0% | |
CAACAAAAAGTAAACTTAGG+GGG | + | chr6.1:174063-174082 | None:intergenic | 30.0% | |
CAACATAAAGTAAACTTAGG+GGG | - | chr6.1:174197-174216 | MS.gene82776:intron | 30.0% | |
CAATTTGACAATCTCATTGT+CGG | + | chr6.1:171409-171428 | None:intergenic | 30.0% | |
CACCATAAGCAATTTGTAAA+CGG | - | chr6.1:172775-172794 | MS.gene82776:intron | 30.0% | |
CATTATAGGTTATCTAACTG+AGG | - | chr6.1:174938-174957 | MS.gene82776:intron | 30.0% | |
CTCAGTTAGATAACCTATAA+TGG | + | chr6.1:174940-174959 | None:intergenic | 30.0% | |
CTGATGATATGTCATCTAAT+CGG | - | chr6.1:174477-174496 | MS.gene82776:CDS | 30.0% | |
CTTCAAGAAAGTGAAAGATA+AGG | - | chr6.1:171794-171813 | MS.gene82776:intron | 30.0% | |
GAAAAGATAAATATGGGTAG+TGG | + | chr6.1:171834-171853 | None:intergenic | 30.0% | |
GAAAATGCAAATCAGATCTT+GGG | - | chr6.1:172147-172166 | MS.gene82776:intron | 30.0% | |
GATAATATTACATACCTCTG+TGG | + | chr6.1:171165-171184 | None:intergenic | 30.0% | |
GCAACAAAAAGTAAACTTAG+GGG | + | chr6.1:174064-174083 | None:intergenic | 30.0% | |
GCAACATAAAGTAAACTTAG+GGG | - | chr6.1:174196-174215 | MS.gene82776:intron | 30.0% | |
GTCAAACCTATCAAATATCA+GGG | - | chr6.1:172933-172952 | MS.gene82776:intron | 30.0% | |
GTTAGCTATAGCTTTCATAT+TGG | + | chr6.1:173597-173616 | None:intergenic | 30.0% | |
GTTATGCATGAGTAAAACAA+AGG | + | chr6.1:174299-174318 | None:intergenic | 30.0% | |
TAAATTGAACACAAGGTGTA+TGG | + | chr6.1:172514-172533 | None:intergenic | 30.0% | |
TATCAAAGCTGAGTAAAACA+AGG | + | chr6.1:172012-172031 | None:intergenic | 30.0% | |
TATCCATTGCATTTACAGAA+AGG | + | chr6.1:173105-173124 | None:intergenic | 30.0% | |
TATGGCTTACTATAATAGGA+AGG | + | chr6.1:173640-173659 | None:intergenic | 30.0% | |
TATTGTTGTCAAGAAGACTA+AGG | + | chr6.1:171710-171729 | None:intergenic | 30.0% | |
TGAAAATGCAAATCAGATCT+TGG | - | chr6.1:172146-172165 | MS.gene82776:intron | 30.0% | |
TGATGATATGTCATCTAATC+GGG | - | chr6.1:174478-174497 | MS.gene82776:CDS | 30.0% | |
TGTCAAACCTATCAAATATC+AGG | - | chr6.1:172932-172951 | MS.gene82776:intron | 30.0% | |
TGTCAATGAAAAACAAGATG+TGG | - | chr6.1:174580-174599 | MS.gene82776:intron | 30.0% | |
TGTGTATCTTTAGATTCATC+AGG | + | chr6.1:174608-174627 | None:intergenic | 30.0% | |
TTACCAAATCTTAACCGATT+GGG | - | chr6.1:171435-171454 | MS.gene82776:intron | 30.0% | |
TTACTATAATAGGAAGGTTC+CGG | + | chr6.1:173634-173653 | None:intergenic | 30.0% | |
! | AGCTTTCATATTGGTTAGAT+TGG | + | chr6.1:173588-173607 | None:intergenic | 30.0% |
! | ATCACAACTTTGGAAAACTT+AGG | + | chr6.1:174008-174027 | None:intergenic | 30.0% |
! | CAAAGGCTTAATTACACTTT+TGG | + | chr6.1:174282-174301 | None:intergenic | 30.0% |
! | GAATTTGAGTTCCTTTGTAA+TGG | - | chr6.1:171347-171366 | MS.gene82776:intron | 30.0% |
! | GTTTTCCAAAGTTGTGATTT+TGG | - | chr6.1:174010-174029 | MS.gene82776:intron | 30.0% |
! | TCAAAAAAGAAGTGTGATGA+AGG | + | chr6.1:174792-174811 | None:intergenic | 30.0% |
! | TCACAACTTTGGAAAACTTA+GGG | + | chr6.1:174007-174026 | None:intergenic | 30.0% |
!! | ACTTTTTGACTCGAAATTAG+GGG | + | chr6.1:174137-174156 | None:intergenic | 30.0% |
!! | ATCACAATTTTGGAAAACCT+AGG | - | chr6.1:174253-174272 | MS.gene82776:intron | 30.0% |
!! | TAATACTGATTCTACTGCAA+TGG | - | chr6.1:174637-174656 | MS.gene82776:intron | 30.0% |
!! | TAGTCACTAGTGTTGTTTAA+TGG | - | chr6.1:172703-172722 | MS.gene82776:intron | 30.0% |
!! | TCACAATTTTGGAAAACCTA+GGG | - | chr6.1:174254-174273 | MS.gene82776:intron | 30.0% |
!!! | GGAAAGAGTTGTTTTTTTAG+AGG | + | chr6.1:174037-174056 | None:intergenic | 30.0% |
AAAATAATGGTTGGGTGTGT+TGG | + | chr6.1:174834-174853 | None:intergenic | 35.0% | |
AAATAATGGTTGGGTGTGTT+GGG | + | chr6.1:174833-174852 | None:intergenic | 35.0% | |
AACGTACCATTGTCTCTTAA+TGG | - | chr6.1:171912-171931 | MS.gene82776:intron | 35.0% | |
AAGAGTCTGTGAACTAACAA+TGG | + | chr6.1:173875-173894 | None:intergenic | 35.0% | |
ACTAAGGAATCACCTTATTC+TGG | - | chr6.1:173730-173749 | MS.gene82776:CDS | 35.0% | |
ACTACCAATGTTATCAATGG+TGG | + | chr6.1:172837-172856 | None:intergenic | 35.0% | |
AGTCAAAAAGTAAACTCAGG+GGG | - | chr6.1:174146-174165 | MS.gene82776:intron | 35.0% | |
CAACTATAAAACACATCGCA+AGG | - | chr6.1:173158-173177 | MS.gene82776:intron | 35.0% | |
CACTACTCATTAACAACAAC+AGG | - | chr6.1:171460-171479 | MS.gene82776:intron | 35.0% | |
CAGCACATATACGATGATAT+AGG | - | chr6.1:172661-172680 | MS.gene82776:intron | 35.0% | |
CATAAGCAATTTGTAAACGG+AGG | - | chr6.1:172778-172797 | MS.gene82776:intron | 35.0% | |
CCACGTAAAACAAAGACTAA+GGG | + | chr6.1:172106-172125 | None:intergenic | 35.0% | |
CGACAATGAGATTGTCAAAT+TGG | - | chr6.1:171407-171426 | MS.gene82776:intron | 35.0% | |
CGAGTCAAAAAGTAAACTCA+GGG | - | chr6.1:174144-174163 | MS.gene82776:intron | 35.0% | |
CGTTTACAAATTGCTTATGG+TGG | + | chr6.1:172777-172796 | None:intergenic | 35.0% | |
CTCCGTTTACAAATTGCTTA+TGG | + | chr6.1:172780-172799 | None:intergenic | 35.0% | |
CTTACCAAATCTTAACCGAT+TGG | - | chr6.1:171434-171453 | MS.gene82776:intron | 35.0% | |
CTTTCTTGAAGTCCAAAACT+CGG | + | chr6.1:171785-171804 | None:intergenic | 35.0% | |
GAAGAAACATGTAAAACCAC+AGG | + | chr6.1:173839-173858 | None:intergenic | 35.0% | |
GAGTCAAAAAGTAAACTCAG+GGG | - | chr6.1:174145-174164 | MS.gene82776:intron | 35.0% | |
GCAATACAAACACCATAGTA+AGG | + | chr6.1:171588-171607 | None:intergenic | 35.0% | |
GGTTTGACACAAATGAGATA+TGG | + | chr6.1:172921-172940 | None:intergenic | 35.0% | |
GTGACTACCAATGTTATCAA+TGG | + | chr6.1:172840-172859 | None:intergenic | 35.0% | |
GTTCCTTTCTGTAAATGCAA+TGG | - | chr6.1:173099-173118 | MS.gene82776:intron | 35.0% | |
TAATCGGGTTTGATGTTAAC+AGG | - | chr6.1:174493-174512 | MS.gene82776:CDS | 35.0% | |
TAATGAGTAGTGTACCCAAT+CGG | + | chr6.1:171452-171471 | None:intergenic | 35.0% | |
TAATTATCTGCATTTGAGGG+TGG | - | chr6.1:173255-173274 | MS.gene82776:intron | 35.0% | |
TACAAATTGCTTATGGTGGT+TGG | + | chr6.1:172773-172792 | None:intergenic | 35.0% | |
TACATATCATGGAGGAATGA+TGG | + | chr6.1:174728-174747 | None:intergenic | 35.0% | |
TAGCTTAAAAGTTGTAGACG+AGG | - | chr6.1:172584-172603 | MS.gene82776:intron | 35.0% | |
TATTGATCTGAGAAAGTCAG+TGG | - | chr6.1:173491-173510 | MS.gene82776:intron | 35.0% | |
TCATCGTATATGTGCTGTAT+TGG | + | chr6.1:172658-172677 | None:intergenic | 35.0% | |
TCGAGTCAAAAAGTAAACTC+AGG | - | chr6.1:174143-174162 | MS.gene82776:intron | 35.0% | |
TGACCTCTTACTAGACTAAT+GGG | - | chr6.1:174357-174376 | MS.gene82776:CDS | 35.0% | |
TGTGTAACTCTACCTTACTA+TGG | - | chr6.1:171573-171592 | MS.gene82776:CDS | 35.0% | |
TTGACCTCTTACTAGACTAA+TGG | - | chr6.1:174356-174375 | MS.gene82776:CDS | 35.0% | |
! | ACAACTTTGGAAAACTTAGG+GGG | + | chr6.1:174005-174024 | None:intergenic | 35.0% |
! | ATGCTGAAGTTATGGGTTAA+AGG | + | chr6.1:172631-172650 | None:intergenic | 35.0% |
! | CACAACTTTGGAAAACTTAG+GGG | + | chr6.1:174006-174025 | None:intergenic | 35.0% |
! | TAACATTGGTAGTCACCTTA+AGG | - | chr6.1:172844-172863 | MS.gene82776:intron | 35.0% |
! | TGTGATGAAGGCACAATTAT+AGG | + | chr6.1:174780-174799 | None:intergenic | 35.0% |
!! | ACAATTTTGGAAAACCTAGG+GGG | - | chr6.1:174256-174275 | MS.gene82776:intron | 35.0% |
!! | CACAATTTTGGAAAACCTAG+GGG | - | chr6.1:174255-174274 | MS.gene82776:intron | 35.0% |
!! | CTTTTTGACTCGAAATTAGG+GGG | + | chr6.1:174136-174155 | None:intergenic | 35.0% |
!! | TCACTAGTGTTGTTTAATGG+AGG | - | chr6.1:172706-172725 | MS.gene82776:intron | 35.0% |
!!! | TTTTAAGATCTGCAGGAAGT+TGG | + | chr6.1:174532-174551 | None:intergenic | 35.0% |
AAAAGTAAACTTAGGGGGCT+TGG | + | chr6.1:174058-174077 | None:intergenic | 40.0% | |
AAGCTATAGCTAACAGCAGT+AGG | - | chr6.1:173603-173622 | MS.gene82776:intron | 40.0% | |
AATATCAGGGTCCGAACAAA+AGG | - | chr6.1:172946-172965 | MS.gene82776:intron | 40.0% | |
ACAACAGCTAGAAGCAAGAT+GGG | + | chr6.1:171542-171561 | None:intergenic | 40.0% | |
ACACATCAAGACTAACTGGA+CGG | + | chr6.1:173081-173100 | None:intergenic | 40.0% | |
AGAAAAGCTTGAGCAACACA+AGG | + | chr6.1:174684-174703 | None:intergenic | 40.0% | |
AGATGTCGCTAGACTTGAAA+AGG | - | chr6.1:173897-173916 | MS.gene82776:intron | 40.0% | |
AGCTATAGCTAACAGCAGTA+GGG | - | chr6.1:173604-173623 | MS.gene82776:intron | 40.0% | |
AGGAACACATCAAGACTAAC+TGG | + | chr6.1:173085-173104 | None:intergenic | 40.0% | |
AGTTATATGCACGCAAGATC+TGG | + | chr6.1:172058-172077 | None:intergenic | 40.0% | |
ATCCTACCTATTCTCATCCT+TGG | - | chr6.1:174897-174916 | MS.gene82776:intron | 40.0% | |
CTAGTGTGTGTAAATTCGGT+AGG | + | chr6.1:171617-171636 | None:intergenic | 40.0% | |
CTGCAAGGAATCCATTACAA+AGG | + | chr6.1:171361-171380 | None:intergenic | 40.0% | |
CTGCATATAATCGTAGACGA+TGG | - | chr6.1:171959-171978 | MS.gene82776:intron | 40.0% | |
GAATTAATCAAATGGGCCAG+TGG | + | chr6.1:173371-173390 | None:intergenic | 40.0% | |
GAGGGAATGAGATCCATTAT+AGG | - | chr6.1:174924-174943 | MS.gene82776:intron | 40.0% | |
GCAGTAAAATATCCACAACC+TGG | + | chr6.1:171943-171962 | None:intergenic | 40.0% | |
GCCACGTAAAACAAAGACTA+AGG | + | chr6.1:172107-172126 | None:intergenic | 40.0% | |
GGTGGCTTATTTGCATTTGA+GGG | - | chr6.1:173273-173292 | MS.gene82776:intron | 40.0% | |
GTACCCAATCGGTTAAGATT+TGG | + | chr6.1:171441-171460 | None:intergenic | 40.0% | |
GTCTTGCCATTAAGAGACAA+TGG | + | chr6.1:171921-171940 | None:intergenic | 40.0% | |
GTGCATATAACTGTAGACGA+CGG | - | chr6.1:172066-172085 | MS.gene82776:intron | 40.0% | |
TAAAGTAAACTTAGGGGGCT+TGG | - | chr6.1:174202-174221 | MS.gene82776:intron | 40.0% | |
TACAACAGCTAGAAGCAAGA+TGG | + | chr6.1:171543-171562 | None:intergenic | 40.0% | |
TATTGCTGCCATCTCTTAGA+GGG | - | chr6.1:173782-173801 | MS.gene82776:CDS | 40.0% | |
TCCAGATGTTTCAGAAGCTA+CGG | - | chr6.1:172414-172433 | MS.gene82776:intron | 40.0% | |
TCTTCATCTGTACTTCCTGT+AGG | - | chr6.1:172312-172331 | MS.gene82776:intron | 40.0% | |
TGATTCTACTGCAATGGAAC+AGG | - | chr6.1:174643-174662 | MS.gene82776:CDS | 40.0% | |
TGGACACATGCTGAAGTTAT+GGG | + | chr6.1:172638-172657 | None:intergenic | 40.0% | |
TTCGGACCCTGATATTTGAT+AGG | + | chr6.1:172942-172961 | None:intergenic | 40.0% | |
TTGGACACATGCTGAAGTTA+TGG | + | chr6.1:172639-172658 | None:intergenic | 40.0% | |
! | AATGAGGACTTTTCCAGATC+AGG | + | chr6.1:171070-171089 | None:intergenic | 40.0% |
! | CACTAGTTCTCACAAACAAC+AGG | - | chr6.1:171631-171650 | MS.gene82776:intron | 40.0% |
! | CCAATGTTATCAATGGTGGA+TGG | + | chr6.1:172833-172852 | None:intergenic | 40.0% |
! | CCATCCACCATTGATAACAT+TGG | - | chr6.1:172830-172849 | MS.gene82776:intron | 40.0% |
! | GAAACATCTGGAGTTTCAAC+AGG | + | chr6.1:172406-172425 | None:intergenic | 40.0% |
! | TAATGGATCTCATTCCCTCA+AGG | + | chr6.1:174923-174942 | None:intergenic | 40.0% |
! | TACAGGAAGTACAGATGAAG+AGG | + | chr6.1:172313-172332 | None:intergenic | 40.0% |
! | TATTTGTGTGAGTTAGCCTG+TGG | - | chr6.1:173820-173839 | MS.gene82776:intron | 40.0% |
! | TCTCCCATTAGTCTAGTAAG+AGG | + | chr6.1:174363-174382 | None:intergenic | 40.0% |
! | TGTTGCTCAAGCTTTTCTTG+TGG | - | chr6.1:174686-174705 | MS.gene82776:CDS | 40.0% |
!! | ATAATTTGCTCTGGAGTAGG+AGG | + | chr6.1:172466-172485 | None:intergenic | 40.0% |
!! | CTTTGTAATGGATTCCTTGC+AGG | - | chr6.1:171359-171378 | MS.gene82776:intron | 40.0% |
!! | GCAATAATTTGCTCTGGAGT+AGG | + | chr6.1:172469-172488 | None:intergenic | 40.0% |
!!! | CCCTTAGTCTTTGTTTTACG+TGG | - | chr6.1:172103-172122 | MS.gene82776:intron | 40.0% |
!!! | GTCAAGCTTTTAAGATCTGC+AGG | + | chr6.1:174539-174558 | None:intergenic | 40.0% |
AAACAAGGGCTAAGACAGAC+TGG | + | chr6.1:171997-172016 | None:intergenic | 45.0% | |
AGACTAAGGAACTGCAGCTT+TGG | + | chr6.1:171696-171715 | None:intergenic | 45.0% | |
AGATGTTTCAGAAGCTACGG+AGG | - | chr6.1:172417-172436 | MS.gene82776:intron | 45.0% | |
AGGTAGAGTTACACAGCTTG+TGG | + | chr6.1:171568-171587 | None:intergenic | 45.0% | |
ATCCAACTCGCGCTCTTTAA+TGG | + | chr6.1:171102-171121 | None:intergenic | 45.0% | |
ATTGCTGCCATCTCTTAGAG+GGG | - | chr6.1:173783-173802 | MS.gene82776:CDS | 45.0% | |
CAACAGCTAGAAGCAAGATG+GGG | + | chr6.1:171541-171560 | None:intergenic | 45.0% | |
CTATTGCTGCCATCTCTTAG+AGG | - | chr6.1:173781-173800 | MS.gene82776:CDS | 45.0% | |
CTTGAAGTCCAAAACTCGGA+GGG | + | chr6.1:171781-171800 | None:intergenic | 45.0% | |
GAGAAAATTCCGCCATGCTA+AGG | + | chr6.1:172751-172770 | None:intergenic | 45.0% | |
GAGGGCCAAAATCACAACTT+TGG | + | chr6.1:174018-174037 | None:intergenic | 45.0% | |
GCCTGGAAAGTAAACTTAGG+GGG | + | chr6.1:174114-174133 | None:intergenic | 45.0% | |
GGAGTAGGAGGAATCACTTT+GGG | + | chr6.1:172454-172473 | None:intergenic | 45.0% | |
GGCCTGGAAAGTAAACTTAG+GGG | + | chr6.1:174115-174134 | None:intergenic | 45.0% | |
GGCTTATTTGCATTTGAGGG+TGG | - | chr6.1:173276-173295 | MS.gene82776:intron | 45.0% | |
GGGCCTGGAAAGTAAACTTA+GGG | + | chr6.1:174116-174135 | None:intergenic | 45.0% | |
GGGTGGCTTATTTGCATTTG+AGG | - | chr6.1:173272-173291 | MS.gene82776:intron | 45.0% | |
TACATGTTTCTTCTGCGTGC+AGG | - | chr6.1:173846-173865 | MS.gene82776:intron | 45.0% | |
TCAAGGCCAAGGATGAGAAT+AGG | + | chr6.1:174906-174925 | None:intergenic | 45.0% | |
TCGCTTCTAAACGTTCCTAC+AGG | + | chr6.1:172330-172349 | None:intergenic | 45.0% | |
TCTTGAAGTCCAAAACTCGG+AGG | + | chr6.1:171782-171801 | None:intergenic | 45.0% | |
TGGAGTAGGAGGAATCACTT+TGG | + | chr6.1:172455-172474 | None:intergenic | 45.0% | |
TGTCTCTTAATGGCAAGACC+AGG | - | chr6.1:171922-171941 | MS.gene82776:intron | 45.0% | |
TGTGTCAAATTGGTCCTGCA+AGG | + | chr6.1:171376-171395 | None:intergenic | 45.0% | |
TTAATGGCAAGACCAGGTTG+TGG | - | chr6.1:171928-171947 | MS.gene82776:intron | 45.0% | |
! | AATTACACTTTTGGCCCCCT+AGG | + | chr6.1:174007-173988 | None:intergenic | 45.0% |
! | CGAAAATTTAGGTGCCACAG+AGG | - | chr6.1:171148-171167 | MS.gene82776:intron | 45.0% |
! | GGGGGCCAAAATCACAATTT+TGG | - | chr6.1:174243-174262 | MS.gene82776:intron | 45.0% |
! | TACCATTAAAGAGCGCGAGT+TGG | - | chr6.1:171097-171116 | MS.gene82776:intron | 45.0% |
! | TTCAGGCCAAGCCTTTTGTT+CGG | + | chr6.1:172960-172979 | None:intergenic | 45.0% |
!! | AAGGAACTGCAGCTTTGGAA+GGG | + | chr6.1:171691-171710 | None:intergenic | 45.0% |
!! | AGCTTTGGAAGGGATGTCAA+AGG | + | chr6.1:171681-171700 | None:intergenic | 45.0% |
!! | ATTCTCATCCTTGGCCTTGA+GGG | - | chr6.1:174906-174925 | MS.gene82776:intron | 45.0% |
!! | GTGTTGTTTAATGGAGGCCA+TGG | - | chr6.1:172712-172731 | MS.gene82776:intron | 45.0% |
!! | GTTGCAATTTTAGCCCCTCA+TGG | - | chr6.1:174079-174098 | MS.gene82776:intron | 45.0% |
!! | GTTGCAATTTTAGTCCCTCG+TGG | + | chr6.1:174181-174200 | None:intergenic | 45.0% |
!! | TAAGGAACTGCAGCTTTGGA+AGG | + | chr6.1:171692-171711 | None:intergenic | 45.0% |
!! | TATTCTCATCCTTGGCCTTG+AGG | - | chr6.1:174905-174924 | MS.gene82776:intron | 45.0% |
!! | TCCGTAGCTTCTGAAACATC+TGG | + | chr6.1:172418-172437 | None:intergenic | 45.0% |
!! | TGTTAACAGGCACTGAAGTC+TGG | - | chr6.1:174506-174525 | MS.gene82776:CDS | 45.0% |
AGGGGGCTAAAATTGCCATG+AGG | + | chr6.1:174097-174116 | None:intergenic | 50.0% | |
ATCTCATTCCCTCAAGGCCA+AGG | + | chr6.1:174917-174936 | None:intergenic | 50.0% | |
CACCTTAAGGTGCAACAGCA+AGG | - | chr6.1:172857-172876 | MS.gene82776:intron | 50.0% | |
GCCCCCTAAGTTTACTTTCC+AGG | - | chr6.1:174110-174129 | MS.gene82776:intron | 50.0% | |
GCTTCCATTCTGCCTTAGCA+TGG | - | chr6.1:172736-172755 | MS.gene82776:intron | 50.0% | |
GGCCAAGGATGAGAATAGGT+AGG | + | chr6.1:174902-174921 | None:intergenic | 50.0% | |
GGGGCCTGGAAAGTAAACTT+AGG | + | chr6.1:174117-174136 | None:intergenic | 50.0% | |
GGGGCTAAAATTGCCATGAG+GGG | + | chr6.1:174095-174114 | None:intergenic | 50.0% | |
GGGGGCTAAAATTGCCATGA+GGG | + | chr6.1:174096-174115 | None:intergenic | 50.0% | |
TAATGGTTGGGTGTGTTGGG+CGG | + | chr6.1:174830-174849 | None:intergenic | 50.0% | |
TCCATTCTGCCTTAGCATGG+CGG | - | chr6.1:172739-172758 | MS.gene82776:intron | 50.0% | |
TTGCTGCCATCTCTTAGAGG+GGG | - | chr6.1:173784-173803 | MS.gene82776:CDS | 50.0% | |
! | CATGTACCCCCTCTAAGAGA+TGG | + | chr6.1:173793-173812 | None:intergenic | 50.0% |
! | GCTGAAATCCCTCCGAGTTT+TGG | - | chr6.1:171770-171789 | MS.gene82776:intron | 50.0% |
!! | AAGGCAGAATGGAAGCACCA+TGG | + | chr6.1:172732-172751 | None:intergenic | 50.0% |
!! | CTCCTTGCTGTTGCACCTTA+AGG | + | chr6.1:172862-172881 | None:intergenic | 50.0% |
AACATGCCATTGCACCGCCA+TGG | + | chr6.1:172808-172827 | None:intergenic | 55.0% | |
AGGGGGCTAAAATTGCCACG+AGG | - | chr6.1:174163-174182 | MS.gene82776:intron | 55.0% | |
CAGGGTCCGAACAAAAGGCT+TGG | - | chr6.1:172951-172970 | MS.gene82776:intron | 55.0% | |
CTAACAGCAGTAGGGCGTAC+CGG | - | chr6.1:173612-173631 | MS.gene82776:intron | 55.0% | |
CTCGGAGGGATTTCAGCTTG+TGG | + | chr6.1:171767-171786 | None:intergenic | 55.0% | |
GACTCACTGCTGACCTGATC+TGG | - | chr6.1:171054-171073 | MS.gene82776:intron | 55.0% | |
GGGGGCTAAAATTGCCACGA+GGG | - | chr6.1:174164-174183 | MS.gene82776:intron | 55.0% | |
GGGTATGCTTTCTGCTCCAC+TGG | - | chr6.1:173352-173371 | MS.gene82776:intron | 55.0% | |
TCCGCCATGCTAAGGCAGAA+TGG | + | chr6.1:172743-172762 | None:intergenic | 55.0% | |
TGACTCGAAATTAGGGGGCC+TGG | + | chr6.1:174131-174150 | None:intergenic | 55.0% | |
TTGTAAACGGAGGCCTGCCA+TGG | - | chr6.1:172788-172807 | MS.gene82776:intron | 55.0% | |
! | TCTGGAGTTTCAACAGGCGC+TGG | + | chr6.1:172400-172419 | None:intergenic | 55.0% |
TAAACGGAGGCCTGCCATGG+CGG | - | chr6.1:172791-172810 | MS.gene82776:intron | 60.0% | |
! | GAGCGCGAGTTGGATCTGAG+AGG | - | chr6.1:171107-171126 | MS.gene82776:intron | 60.0% |
TGCCATTGCACCGCCATGGC+AGG | + | chr6.1:172804-172823 | None:intergenic | 65.0% | |
GGCCTGCCATGGCGGTGCAA+TGG | - | chr6.1:172799-172818 | MS.gene82776:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 171047 | 175105 | 171047 | ID=MS.gene82776 |
chr6.1 | mRNA | 171047 | 175105 | 171047 | ID=MS.gene82776.t1;Parent=MS.gene82776 |
chr6.1 | exon | 174983 | 175105 | 174983 | ID=MS.gene82776.t1.exon1;Parent=MS.gene82776.t1 |
chr6.1 | CDS | 174983 | 175105 | 174983 | ID=cds.MS.gene82776.t1;Parent=MS.gene82776.t1 |
chr6.1 | exon | 174642 | 174771 | 174642 | ID=MS.gene82776.t1.exon2;Parent=MS.gene82776.t1 |
chr6.1 | CDS | 174642 | 174771 | 174642 | ID=cds.MS.gene82776.t1;Parent=MS.gene82776.t1 |
chr6.1 | exon | 174337 | 174542 | 174337 | ID=MS.gene82776.t1.exon3;Parent=MS.gene82776.t1 |
chr6.1 | CDS | 174337 | 174542 | 174337 | ID=cds.MS.gene82776.t1;Parent=MS.gene82776.t1 |
chr6.1 | exon | 173657 | 173818 | 173657 | ID=MS.gene82776.t1.exon4;Parent=MS.gene82776.t1 |
chr6.1 | CDS | 173657 | 173818 | 173657 | ID=cds.MS.gene82776.t1;Parent=MS.gene82776.t1 |
chr6.1 | exon | 172234 | 172284 | 172234 | ID=MS.gene82776.t1.exon5;Parent=MS.gene82776.t1 |
chr6.1 | CDS | 172234 | 172284 | 172234 | ID=cds.MS.gene82776.t1;Parent=MS.gene82776.t1 |
chr6.1 | exon | 171488 | 171637 | 171488 | ID=MS.gene82776.t1.exon6;Parent=MS.gene82776.t1 |
chr6.1 | CDS | 171488 | 171637 | 171488 | ID=cds.MS.gene82776.t1;Parent=MS.gene82776.t1 |
chr6.1 | exon | 171047 | 171052 | 171047 | ID=MS.gene82776.t1.exon7;Parent=MS.gene82776.t1 |
chr6.1 | CDS | 171047 | 171052 | 171047 | ID=cds.MS.gene82776.t1;Parent=MS.gene82776.t1 |
Gene Sequence |
Protein sequence |